data_3VOR # _entry.id 3VOR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VOR RCSB RCSB095311 WWPDB D_1000095311 # _pdbx_database_status.entry_id 3VOR _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-02-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fukakusa, S.' 1 'Kawahara, K.' 2 'Nakamura, S.' 3 'Iwasita, T.' 4 'Baba, S.' 5 'Nishimura, M.' 6 'Kobayashi, Y.' 7 'Honda, T.' 8 'Iida, T.' 9 'Taniguchi, T.' 10 'Ohkubo, T.' 11 # _citation.id primary _citation.title ;Structure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 A resolution by sulfur-SAD phasing ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 68 _citation.page_first 1418 _citation.page_last 1429 _citation.year 2012 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22993096 _citation.pdbx_database_id_DOI 10.1107/S0907444912034464 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fukakusa, S.' 1 primary 'Kawahara, K.' 2 primary 'Nakamura, S.' 3 primary 'Iwashita, T.' 4 primary 'Baba, S.' 5 primary 'Nishimura, M.' 6 primary 'Kobayashi, Y.' 7 primary 'Honda, T.' 8 primary 'Iida, T.' 9 primary 'Taniguchi, T.' 10 primary 'Ohkubo, T.' 11 # _cell.entry_id 3VOR _cell.length_a 33.820 _cell.length_b 47.710 _cell.length_c 42.450 _cell.angle_alpha 90.00 _cell.angle_beta 107.52 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VOR _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CFA/III pilin' 18899.984 1 ? ? ? ? 2 water nat water 18.015 237 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CofA, Major pilin subunit' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSDSRTVSELVTNTNTIRVAMKDAYQRDGKYPDYQAPLSLTADSIKTDSTGIAVAQLVQLGKLTPDEARNGISGDYIGIG GAITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEYVAVGTSPSGSYDALSAGAVNMLAATDNTTILRSLAANGQVS LTAEKILKTCTATVNSITLASR ; _entity_poly.pdbx_seq_one_letter_code_can ;GSDSRTVSELVTNTNTIRVAMKDAYQRDGKYPDYQAPLSLTADSIKTDSTGIAVAQLVQLGKLTPDEARNGISGDYIGIG GAITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEYVAVGTSPSGSYDALSAGAVNMLAATDNTTILRSLAANGQVS LTAEKILKTCTATVNSITLASR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 SER n 1 5 ARG n 1 6 THR n 1 7 VAL n 1 8 SER n 1 9 GLU n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ASN n 1 14 THR n 1 15 ASN n 1 16 THR n 1 17 ILE n 1 18 ARG n 1 19 VAL n 1 20 ALA n 1 21 MET n 1 22 LYS n 1 23 ASP n 1 24 ALA n 1 25 TYR n 1 26 GLN n 1 27 ARG n 1 28 ASP n 1 29 GLY n 1 30 LYS n 1 31 TYR n 1 32 PRO n 1 33 ASP n 1 34 TYR n 1 35 GLN n 1 36 ALA n 1 37 PRO n 1 38 LEU n 1 39 SER n 1 40 LEU n 1 41 THR n 1 42 ALA n 1 43 ASP n 1 44 SER n 1 45 ILE n 1 46 LYS n 1 47 THR n 1 48 ASP n 1 49 SER n 1 50 THR n 1 51 GLY n 1 52 ILE n 1 53 ALA n 1 54 VAL n 1 55 ALA n 1 56 GLN n 1 57 LEU n 1 58 VAL n 1 59 GLN n 1 60 LEU n 1 61 GLY n 1 62 LYS n 1 63 LEU n 1 64 THR n 1 65 PRO n 1 66 ASP n 1 67 GLU n 1 68 ALA n 1 69 ARG n 1 70 ASN n 1 71 GLY n 1 72 ILE n 1 73 SER n 1 74 GLY n 1 75 ASP n 1 76 TYR n 1 77 ILE n 1 78 GLY n 1 79 ILE n 1 80 GLY n 1 81 GLY n 1 82 ALA n 1 83 ILE n 1 84 THR n 1 85 SER n 1 86 SER n 1 87 GLY n 1 88 SER n 1 89 THR n 1 90 ILE n 1 91 ASN n 1 92 LYS n 1 93 GLY n 1 94 PHE n 1 95 ALA n 1 96 MET n 1 97 GLU n 1 98 LEU n 1 99 ASN n 1 100 GLY n 1 101 LEU n 1 102 SER n 1 103 GLN n 1 104 GLU n 1 105 GLN n 1 106 CYS n 1 107 ARG n 1 108 SER n 1 109 ILE n 1 110 LEU n 1 111 GLY n 1 112 GLN n 1 113 VAL n 1 114 GLY n 1 115 ASP n 1 116 ASN n 1 117 TRP n 1 118 GLU n 1 119 TYR n 1 120 VAL n 1 121 ALA n 1 122 VAL n 1 123 GLY n 1 124 THR n 1 125 SER n 1 126 PRO n 1 127 SER n 1 128 GLY n 1 129 SER n 1 130 TYR n 1 131 ASP n 1 132 ALA n 1 133 LEU n 1 134 SER n 1 135 ALA n 1 136 GLY n 1 137 ALA n 1 138 VAL n 1 139 ASN n 1 140 MET n 1 141 LEU n 1 142 ALA n 1 143 ALA n 1 144 THR n 1 145 ASP n 1 146 ASN n 1 147 THR n 1 148 THR n 1 149 ILE n 1 150 LEU n 1 151 ARG n 1 152 SER n 1 153 LEU n 1 154 ALA n 1 155 ALA n 1 156 ASN n 1 157 GLY n 1 158 GLN n 1 159 VAL n 1 160 SER n 1 161 LEU n 1 162 THR n 1 163 ALA n 1 164 GLU n 1 165 LYS n 1 166 ILE n 1 167 LEU n 1 168 LYS n 1 169 THR n 1 170 CYS n 1 171 THR n 1 172 ALA n 1 173 THR n 1 174 VAL n 1 175 ASN n 1 176 SER n 1 177 ILE n 1 178 THR n 1 179 LEU n 1 180 ALA n 1 181 SER n 1 182 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene cofA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 260-1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'OrigamiB(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET32b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q59393_ECOLX _struct_ref.pdbx_db_accession Q59393 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DSRTVSELVTNTNTIRVAMKDAYQRDGKYPDYQAPLSLTADSIKTDSTGIAVAQLVQLGKLTPDEARNGISGDYIGIGGA ITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEYVAVGTSPSGSYDALSAGAVNMLAATDNTTILRSLAANGQVSLT AEKILKTCTATVNSITLASR ; _struct_ref.pdbx_align_begin 59 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VOR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q59393 _struct_ref_seq.db_align_beg 59 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 182 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VOR GLY A 1 ? UNP Q59393 ? ? 'EXPRESSION TAG' 1 1 1 3VOR SER A 2 ? UNP Q59393 ? ? 'EXPRESSION TAG' 2 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VOR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.73 _exptl_crystal.density_percent_sol 28.8 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 3.8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '26% PEG 4000, pH 3.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-10-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (111) DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength 0.9 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3VOR _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.860 _reflns.d_resolution_high 0.900 _reflns.number_obs 91809 _reflns.number_all ? _reflns.percent_possible_obs 96.4 _reflns.pdbx_Rmerge_I_obs 0.05000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.6000 _reflns.B_iso_Wilson_estimate 3.2 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.90 _reflns_shell.d_res_low 0.95 _reflns_shell.percent_possible_all 94.9 _reflns_shell.Rmerge_I_obs 0.17000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.110 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3VOR _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 91733 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.86 _refine.ls_d_res_high 0.90 _refine.ls_percent_reflns_obs 96.4 _refine.ls_R_factor_obs 0.121 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.120 _refine.ls_R_factor_R_free 0.130 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 4590 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.220 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 4.5 _refine.aniso_B[1][1] -1.1894 _refine.aniso_B[2][2] 0.7523 _refine.aniso_B[3][3] 0.4371 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0028 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.558 _refine.solvent_model_param_bsol 36.895 _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.47 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.08 _refine.pdbx_overall_phase_error 9.05 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1322 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 1559 _refine_hist.d_res_high 0.90 _refine_hist.d_res_low 30.86 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 1611 'X-RAY DIFFRACTION' ? f_angle_d 1.541 ? ? 2216 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.484 ? ? 636 'X-RAY DIFFRACTION' ? f_chiral_restr 0.086 ? ? 263 'X-RAY DIFFRACTION' ? f_plane_restr 0.009 ? ? 299 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 0.9000 0.9102 2850 0.1458 95.00 0.1582 . . 150 . . . . 'X-RAY DIFFRACTION' . 0.9102 0.9209 2831 0.1394 95.00 0.1592 . . 148 . . . . 'X-RAY DIFFRACTION' . 0.9209 0.9322 2843 0.1324 95.00 0.1341 . . 150 . . . . 'X-RAY DIFFRACTION' . 0.9322 0.9440 2899 0.1283 95.00 0.1342 . . 153 . . . . 'X-RAY DIFFRACTION' . 0.9440 0.9564 2825 0.1209 95.00 0.1278 . . 148 . . . . 'X-RAY DIFFRACTION' . 0.9564 0.9695 2884 0.1197 95.00 0.1254 . . 152 . . . . 'X-RAY DIFFRACTION' . 0.9695 0.9834 2841 0.1148 96.00 0.1163 . . 150 . . . . 'X-RAY DIFFRACTION' . 0.9834 0.9980 2868 0.1073 95.00 0.1111 . . 151 . . . . 'X-RAY DIFFRACTION' . 0.9980 1.0136 2903 0.1066 96.00 0.1084 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.0136 1.0303 2875 0.0997 96.00 0.1017 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.0303 1.0480 2883 0.1017 96.00 0.1196 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.0480 1.0671 2895 0.1000 96.00 0.1144 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.0671 1.0876 2897 0.0930 96.00 0.1095 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.0876 1.1098 2874 0.0895 96.00 0.0902 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.1098 1.1339 2894 0.0857 96.00 0.0815 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.1339 1.1603 2898 0.0837 96.00 0.0968 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.1603 1.1893 2876 0.0882 96.00 0.1166 . . 151 . . . . 'X-RAY DIFFRACTION' . 1.1893 1.2215 2933 0.0880 97.00 0.0974 . . 154 . . . . 'X-RAY DIFFRACTION' . 1.2215 1.2574 2917 0.0932 97.00 0.1022 . . 154 . . . . 'X-RAY DIFFRACTION' . 1.2574 1.2980 2916 0.0988 97.00 0.1096 . . 154 . . . . 'X-RAY DIFFRACTION' . 1.2980 1.3444 2911 0.0975 97.00 0.1009 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.3444 1.3982 2924 0.1038 97.00 0.1255 . . 154 . . . . 'X-RAY DIFFRACTION' . 1.3982 1.4619 2957 0.1016 97.00 0.1204 . . 155 . . . . 'X-RAY DIFFRACTION' . 1.4619 1.5389 2942 0.1084 97.00 0.1376 . . 155 . . . . 'X-RAY DIFFRACTION' . 1.5389 1.6354 2941 0.1120 97.00 0.1171 . . 155 . . . . 'X-RAY DIFFRACTION' . 1.6354 1.7616 2960 0.1221 98.00 0.1401 . . 156 . . . . 'X-RAY DIFFRACTION' . 1.7616 1.9389 2944 0.1289 98.00 0.1325 . . 155 . . . . 'X-RAY DIFFRACTION' . 1.9389 2.2194 2967 0.1302 98.00 0.1519 . . 156 . . . . 'X-RAY DIFFRACTION' . 2.2194 2.7959 2994 0.1422 98.00 0.1540 . . 158 . . . . 'X-RAY DIFFRACTION' . 2.7959 30.8832 3041 0.1804 98.00 0.1768 . . 161 . . . . # _struct.entry_id 3VOR _struct.title 'Crystal Structure Analysis of the CofA' _struct.pdbx_descriptor 'CFA/III pilin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VOR _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'Type IV pilin, colonization, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? GLN A 26 ? SER A 4 GLN A 26 1 ? 23 HELX_P HELX_P2 2 ARG A 27 ? GLY A 29 ? ARG A 27 GLY A 29 5 ? 3 HELX_P HELX_P3 3 ASP A 43 ? THR A 47 ? ASP A 43 THR A 47 5 ? 5 HELX_P HELX_P4 4 ILE A 52 ? LEU A 60 ? ILE A 52 LEU A 60 1 ? 9 HELX_P HELX_P5 5 THR A 64 ? GLU A 67 ? THR A 64 GLU A 67 5 ? 4 HELX_P HELX_P6 6 SER A 102 ? GLY A 114 ? SER A 102 GLY A 114 1 ? 13 HELX_P HELX_P7 7 ASP A 115 ? TRP A 117 ? ASP A 115 TRP A 117 5 ? 3 HELX_P HELX_P8 8 TYR A 130 ? ALA A 135 ? TYR A 130 ALA A 135 1 ? 6 HELX_P HELX_P9 9 THR A 162 ? LEU A 167 ? THR A 162 LEU A 167 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 170 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 106 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 170 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.059 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 69 ? ASN A 70 ? ARG A 69 ASN A 70 A 2 ASP A 75 ? TYR A 76 ? ASP A 75 TYR A 76 B 1 VAL A 138 ? ASN A 139 ? VAL A 138 ASN A 139 B 2 GLY A 78 ? ILE A 83 ? GLY A 78 ILE A 83 B 3 GLY A 93 ? LEU A 101 ? GLY A 93 LEU A 101 B 4 ASN A 175 ? SER A 181 ? ASN A 175 SER A 181 B 5 TYR A 119 ? GLY A 123 ? TYR A 119 GLY A 123 B 6 ILE A 149 ? ARG A 151 ? ILE A 149 ARG A 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 70 ? N ASN A 70 O ASP A 75 ? O ASP A 75 B 1 2 O VAL A 138 ? O VAL A 138 N ILE A 83 ? N ILE A 83 B 2 3 N GLY A 80 ? N GLY A 80 O ALA A 95 ? O ALA A 95 B 3 4 N LEU A 98 ? N LEU A 98 O ILE A 177 ? O ILE A 177 B 4 5 O THR A 178 ? O THR A 178 N ALA A 121 ? N ALA A 121 B 5 6 N VAL A 120 ? N VAL A 120 O ARG A 151 ? O ARG A 151 # _atom_sites.entry_id 3VOR _atom_sites.fract_transf_matrix[1][1] 0.029568 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009334 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020960 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024703 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 MET 21 21 21 MET MET A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 MET 96 96 96 MET MET A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 CYS 106 106 106 CYS CYS A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 TRP 117 117 117 TRP TRP A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 TYR 119 119 119 TYR TYR A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 TYR 130 130 130 TYR TYR A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 MET 140 140 140 MET MET A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 ASN 146 146 146 ASN ASN A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 SER 160 160 160 SER SER A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 LYS 168 168 168 LYS LYS A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 CYS 170 170 170 CYS CYS A . n A 1 171 THR 171 171 171 THR THR A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 ASN 175 175 175 ASN ASN A . n A 1 176 SER 176 176 176 SER SER A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 ARG 182 182 182 ARG ARG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-26 2 'Structure model' 1 1 2013-07-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 0.900 _diffrn_reflns.pdbx_d_res_low 30.860 _diffrn_reflns.pdbx_number_obs 26512 _diffrn_reflns.pdbx_Rmerge_I_obs 0.051 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 2.10 _diffrn_reflns.av_sigmaI_over_netI 0.000 _diffrn_reflns.pdbx_redundancy 13.20 _diffrn_reflns.pdbx_percent_possible_obs 96.4 _diffrn_reflns.number 351095 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.75 50.00 1101 ? 0.036 ? 2.145 13.40 96.20 1 2.97 3.75 1966 ? 0.037 ? 2.280 14.50 99.60 1 2.60 2.97 2541 ? 0.041 ? 2.388 14.80 100.00 1 2.36 2.60 2971 ? 0.046 ? 2.411 13.20 100.00 1 2.19 2.36 3372 ? 0.049 ? 2.540 13.50 99.90 1 2.06 2.19 3702 ? 0.055 ? 2.884 13.60 99.80 1 1.96 2.06 3971 ? 0.061 ? 2.984 13.50 99.80 1 1.87 1.96 4202 ? 0.066 ? 2.878 13.50 99.90 1 1.80 1.87 4437 ? 0.068 ? 2.565 13.60 99.90 1 1.74 1.80 4586 ? 0.072 ? 2.157 13.60 100.00 1 1.68 1.74 4764 ? 0.077 ? 2.012 13.60 100.00 1 1.64 1.68 4983 ? 0.082 ? 1.903 13.60 100.00 1 1.59 1.64 5224 ? 0.090 ? 1.775 13.40 100.00 1 1.55 1.59 5440 ? 0.094 ? 1.740 13.40 100.00 1 1.52 1.55 5612 ? 0.107 ? 1.628 13.40 100.00 1 1.49 1.52 5838 ? 0.119 ? 1.507 13.10 100.00 1 1.46 1.49 5984 ? 0.139 ? 1.379 13.10 100.00 1 1.43 1.46 6238 ? 0.159 ? 1.366 12.90 100.00 1 1.40 1.43 6386 ? 0.196 ? 1.463 12.40 99.80 1 1.38 1.40 6562 ? 0.248 ? 1.562 8.60 97.10 # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 PHENIX 1.7.3_928 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 428 ? ? O A HOH 429 ? ? 1.87 2 1 O A HOH 367 ? ? O A HOH 429 ? ? 1.90 3 1 O A HOH 281 ? ? O A HOH 340 ? ? 1.93 4 1 O A HOH 341 ? ? O A HOH 347 ? ? 1.94 5 1 OE2 A GLU 118 ? B O A HOH 436 ? ? 1.95 6 1 O A HOH 308 ? ? O A HOH 335 ? ? 1.97 7 1 OD1 A ASP 23 ? B O A HOH 437 ? ? 1.97 8 1 O A HOH 411 ? ? O A HOH 423 ? ? 2.03 9 1 OD2 A ASP 23 ? B O A HOH 348 ? ? 2.06 10 1 OD2 A ASP 66 ? B O A HOH 422 ? ? 2.09 11 1 NE2 A GLN 56 ? B O A HOH 423 ? ? 2.12 12 1 O A HOH 290 ? ? O A HOH 340 ? ? 2.13 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 289 ? ? 1_555 O A HOH 411 ? ? 1_556 1.36 2 1 O A HOH 381 ? ? 1_555 O A HOH 393 ? ? 1_455 1.77 3 1 OD2 A ASP 23 ? B 1_555 O A HOH 425 ? ? 2_747 1.93 4 1 O A HOH 346 ? ? 1_555 O A HOH 399 ? ? 2_848 2.00 5 1 O A HOH 313 ? ? 1_555 O A HOH 376 ? ? 2_758 2.05 6 1 O A HOH 288 ? ? 1_555 O A HOH 354 ? ? 1_656 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -77.11 -161.84 2 1 THR A 6 ? B 78.03 -28.96 3 1 ASN A 146 ? B 79.38 -19.66 4 1 THR A 148 ? ? -123.48 -61.10 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . B 2 HOH 21 221 21 HOH HOH A . B 2 HOH 22 222 22 HOH HOH A . B 2 HOH 23 223 23 HOH HOH A . B 2 HOH 24 224 24 HOH HOH A . B 2 HOH 25 225 25 HOH HOH A . B 2 HOH 26 226 26 HOH HOH A . B 2 HOH 27 227 27 HOH HOH A . B 2 HOH 28 228 28 HOH HOH A . B 2 HOH 29 229 29 HOH HOH A . B 2 HOH 30 230 30 HOH HOH A . B 2 HOH 31 231 31 HOH HOH A . B 2 HOH 32 232 32 HOH HOH A . B 2 HOH 33 233 33 HOH HOH A . B 2 HOH 34 234 34 HOH HOH A . B 2 HOH 35 235 35 HOH HOH A . B 2 HOH 36 236 36 HOH HOH A . B 2 HOH 37 237 37 HOH HOH A . B 2 HOH 38 238 38 HOH HOH A . B 2 HOH 39 239 39 HOH HOH A . B 2 HOH 40 240 40 HOH HOH A . B 2 HOH 41 241 41 HOH HOH A . B 2 HOH 42 242 42 HOH HOH A . B 2 HOH 43 243 43 HOH HOH A . B 2 HOH 44 244 44 HOH HOH A . B 2 HOH 45 245 45 HOH HOH A . B 2 HOH 46 246 46 HOH HOH A . B 2 HOH 47 247 47 HOH HOH A . B 2 HOH 48 248 48 HOH HOH A . B 2 HOH 49 249 49 HOH HOH A . B 2 HOH 50 250 50 HOH HOH A . B 2 HOH 51 251 51 HOH HOH A . B 2 HOH 52 252 52 HOH HOH A . B 2 HOH 53 253 53 HOH HOH A . B 2 HOH 54 254 54 HOH HOH A . B 2 HOH 55 255 55 HOH HOH A . B 2 HOH 56 256 56 HOH HOH A . B 2 HOH 57 257 57 HOH HOH A . B 2 HOH 58 258 58 HOH HOH A . B 2 HOH 59 259 59 HOH HOH A . B 2 HOH 60 260 60 HOH HOH A . B 2 HOH 61 261 61 HOH HOH A . B 2 HOH 62 262 62 HOH HOH A . B 2 HOH 63 263 63 HOH HOH A . B 2 HOH 64 264 64 HOH HOH A . B 2 HOH 65 265 65 HOH HOH A . B 2 HOH 66 266 66 HOH HOH A . B 2 HOH 67 267 67 HOH HOH A . B 2 HOH 68 268 68 HOH HOH A . B 2 HOH 69 269 69 HOH HOH A . B 2 HOH 70 270 70 HOH HOH A . B 2 HOH 71 271 71 HOH HOH A . B 2 HOH 72 272 72 HOH HOH A . B 2 HOH 73 273 73 HOH HOH A . B 2 HOH 74 274 74 HOH HOH A . B 2 HOH 75 275 75 HOH HOH A . B 2 HOH 76 276 76 HOH HOH A . B 2 HOH 77 277 77 HOH HOH A . B 2 HOH 78 278 78 HOH HOH A . B 2 HOH 79 279 79 HOH HOH A . B 2 HOH 80 280 80 HOH HOH A . B 2 HOH 81 281 81 HOH HOH A . B 2 HOH 82 282 82 HOH HOH A . B 2 HOH 83 283 83 HOH HOH A . B 2 HOH 84 284 84 HOH HOH A . B 2 HOH 85 285 85 HOH HOH A . B 2 HOH 86 286 86 HOH HOH A . B 2 HOH 87 287 87 HOH HOH A . B 2 HOH 88 288 88 HOH HOH A . B 2 HOH 89 289 89 HOH HOH A . B 2 HOH 90 290 90 HOH HOH A . B 2 HOH 91 291 91 HOH HOH A . B 2 HOH 92 292 92 HOH HOH A . B 2 HOH 93 293 93 HOH HOH A . B 2 HOH 94 294 94 HOH HOH A . B 2 HOH 95 295 95 HOH HOH A . B 2 HOH 96 296 96 HOH HOH A . B 2 HOH 97 297 97 HOH HOH A . B 2 HOH 98 298 98 HOH HOH A . B 2 HOH 99 299 99 HOH HOH A . B 2 HOH 100 300 100 HOH HOH A . B 2 HOH 101 301 101 HOH HOH A . B 2 HOH 102 302 102 HOH HOH A . B 2 HOH 103 303 103 HOH HOH A . B 2 HOH 104 304 104 HOH HOH A . B 2 HOH 105 305 105 HOH HOH A . B 2 HOH 106 306 106 HOH HOH A . B 2 HOH 107 307 107 HOH HOH A . B 2 HOH 108 308 108 HOH HOH A . B 2 HOH 109 309 109 HOH HOH A . B 2 HOH 110 310 110 HOH HOH A . B 2 HOH 111 311 111 HOH HOH A . B 2 HOH 112 312 112 HOH HOH A . B 2 HOH 113 313 113 HOH HOH A . B 2 HOH 114 314 114 HOH HOH A . B 2 HOH 115 315 115 HOH HOH A . B 2 HOH 116 316 116 HOH HOH A . B 2 HOH 117 317 117 HOH HOH A . B 2 HOH 118 318 118 HOH HOH A . B 2 HOH 119 319 119 HOH HOH A . B 2 HOH 120 320 120 HOH HOH A . B 2 HOH 121 321 121 HOH HOH A . B 2 HOH 122 322 122 HOH HOH A . B 2 HOH 123 323 123 HOH HOH A . B 2 HOH 124 324 124 HOH HOH A . B 2 HOH 125 325 125 HOH HOH A . B 2 HOH 126 326 126 HOH HOH A . B 2 HOH 127 327 127 HOH HOH A . B 2 HOH 128 328 128 HOH HOH A . B 2 HOH 129 329 129 HOH HOH A . B 2 HOH 130 330 130 HOH HOH A . B 2 HOH 131 331 131 HOH HOH A . B 2 HOH 132 332 132 HOH HOH A . B 2 HOH 133 333 133 HOH HOH A . B 2 HOH 134 334 134 HOH HOH A . B 2 HOH 135 335 135 HOH HOH A . B 2 HOH 136 336 136 HOH HOH A . B 2 HOH 137 337 137 HOH HOH A . B 2 HOH 138 338 138 HOH HOH A . B 2 HOH 139 339 139 HOH HOH A . B 2 HOH 140 340 140 HOH HOH A . B 2 HOH 141 341 141 HOH HOH A . B 2 HOH 142 342 142 HOH HOH A . B 2 HOH 143 343 143 HOH HOH A . B 2 HOH 144 344 144 HOH HOH A . B 2 HOH 145 345 145 HOH HOH A . B 2 HOH 146 346 146 HOH HOH A . B 2 HOH 147 347 147 HOH HOH A . B 2 HOH 148 348 148 HOH HOH A . B 2 HOH 149 349 149 HOH HOH A . B 2 HOH 150 350 150 HOH HOH A . B 2 HOH 151 351 151 HOH HOH A . B 2 HOH 152 352 152 HOH HOH A . B 2 HOH 153 353 153 HOH HOH A . B 2 HOH 154 354 154 HOH HOH A . B 2 HOH 155 355 155 HOH HOH A . B 2 HOH 156 356 156 HOH HOH A . B 2 HOH 157 357 157 HOH HOH A . B 2 HOH 158 358 158 HOH HOH A . B 2 HOH 159 359 159 HOH HOH A . B 2 HOH 160 360 160 HOH HOH A . B 2 HOH 161 361 161 HOH HOH A . B 2 HOH 162 362 162 HOH HOH A . B 2 HOH 163 363 163 HOH HOH A . B 2 HOH 164 364 164 HOH HOH A . B 2 HOH 165 365 165 HOH HOH A . B 2 HOH 166 366 166 HOH HOH A . B 2 HOH 167 367 167 HOH HOH A . B 2 HOH 168 368 168 HOH HOH A . B 2 HOH 169 369 169 HOH HOH A . B 2 HOH 170 370 170 HOH HOH A . B 2 HOH 171 371 171 HOH HOH A . B 2 HOH 172 372 172 HOH HOH A . B 2 HOH 173 373 173 HOH HOH A . B 2 HOH 174 374 174 HOH HOH A . B 2 HOH 175 375 175 HOH HOH A . B 2 HOH 176 376 176 HOH HOH A . B 2 HOH 177 377 177 HOH HOH A . B 2 HOH 178 378 178 HOH HOH A . B 2 HOH 179 379 179 HOH HOH A . B 2 HOH 180 380 180 HOH HOH A . B 2 HOH 181 381 181 HOH HOH A . B 2 HOH 182 382 182 HOH HOH A . B 2 HOH 183 383 183 HOH HOH A . B 2 HOH 184 384 184 HOH HOH A . B 2 HOH 185 385 185 HOH HOH A . B 2 HOH 186 386 186 HOH HOH A . B 2 HOH 187 387 187 HOH HOH A . B 2 HOH 188 388 188 HOH HOH A . B 2 HOH 189 389 189 HOH HOH A . B 2 HOH 190 390 190 HOH HOH A . B 2 HOH 191 391 191 HOH HOH A . B 2 HOH 192 392 192 HOH HOH A . B 2 HOH 193 393 193 HOH HOH A . B 2 HOH 194 394 194 HOH HOH A . B 2 HOH 195 395 195 HOH HOH A . B 2 HOH 196 396 196 HOH HOH A . B 2 HOH 197 397 197 HOH HOH A . B 2 HOH 198 398 198 HOH HOH A . B 2 HOH 199 399 199 HOH HOH A . B 2 HOH 200 400 200 HOH HOH A . B 2 HOH 201 401 201 HOH HOH A . B 2 HOH 202 402 202 HOH HOH A . B 2 HOH 203 403 203 HOH HOH A . B 2 HOH 204 404 204 HOH HOH A . B 2 HOH 205 405 205 HOH HOH A . B 2 HOH 206 406 206 HOH HOH A . B 2 HOH 207 407 207 HOH HOH A . B 2 HOH 208 408 208 HOH HOH A . B 2 HOH 209 409 209 HOH HOH A . B 2 HOH 210 410 210 HOH HOH A . B 2 HOH 211 411 211 HOH HOH A . B 2 HOH 212 412 212 HOH HOH A . B 2 HOH 213 413 213 HOH HOH A . B 2 HOH 214 414 214 HOH HOH A . B 2 HOH 215 415 215 HOH HOH A . B 2 HOH 216 416 216 HOH HOH A . B 2 HOH 217 417 217 HOH HOH A . B 2 HOH 218 418 218 HOH HOH A . B 2 HOH 219 419 219 HOH HOH A . B 2 HOH 220 420 220 HOH HOH A . B 2 HOH 221 421 221 HOH HOH A . B 2 HOH 222 422 222 HOH HOH A . B 2 HOH 223 423 223 HOH HOH A . B 2 HOH 224 424 224 HOH HOH A . B 2 HOH 225 425 225 HOH HOH A . B 2 HOH 226 426 226 HOH HOH A . B 2 HOH 227 427 227 HOH HOH A . B 2 HOH 228 428 228 HOH HOH A . B 2 HOH 229 429 229 HOH HOH A . B 2 HOH 230 430 230 HOH HOH A . B 2 HOH 231 431 231 HOH HOH A . B 2 HOH 232 432 232 HOH HOH A . B 2 HOH 233 433 233 HOH HOH A . B 2 HOH 234 434 234 HOH HOH A . B 2 HOH 235 435 235 HOH HOH A . B 2 HOH 236 436 236 HOH HOH A . B 2 HOH 237 437 237 HOH HOH A . #