data_3VP4 # _entry.id 3VP4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VP4 RCSB RCSB095324 WWPDB D_1000095324 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3VOY . unspecified PDB 3VPZ . unspecified PDB 3VP0 . unspecified PDB 3VP1 . unspecified PDB 3VP2 . unspecified PDB 3VP3 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VP4 _pdbx_database_status.recvd_initial_deposition_date 2012-02-23 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thangavelu, K.' 1 'Sivaraman, J.' 2 # _citation.id primary _citation.title ;Structural basis for the allosteric inhibitory mechanism of human kidney-type glutaminase (KGA) and its regulation by Raf-Mek-Erk signaling in cancer cell metabolism. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 7705 _citation.page_last 7710 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22538822 _citation.pdbx_database_id_DOI 10.1073/pnas.1116573109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Thangavelu, K.' 1 primary 'Pan, C.Q.' 2 primary 'Karlberg, T.' 3 primary 'Balaji, G.' 4 primary 'Uttamchandani, M.' 5 primary 'Suresh, V.' 6 primary 'Schuler, H.' 7 primary 'Low, B.C.' 8 primary 'Sivaraman, J.' 9 # _cell.entry_id 3VP4 _cell.length_a 139.555 _cell.length_b 139.555 _cell.length_c 156.866 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VP4 _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glutaminase kidney isoform, mitochondrial' 34816.742 1 3.5.1.2 ? 'UNP Residues 221-533' ? 2 non-polymer syn "5,5'-butane-1,4-diylbis(1,3,4-thiadiazol-2-amine)" 256.351 1 ? ? ? ? 3 water nat water 18.015 87 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GLS, K-glutaminase, L-glutamine amidohydrolase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QSMIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAV NDLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNAT FQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTL SLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNL ; _entity_poly.pdbx_seq_one_letter_code_can ;QSMIPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAV NDLGTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNAT FQSERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTL SLMHSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 SER n 1 3 MET n 1 4 ILE n 1 5 PRO n 1 6 ASP n 1 7 PHE n 1 8 MET n 1 9 SER n 1 10 PHE n 1 11 THR n 1 12 SER n 1 13 HIS n 1 14 ILE n 1 15 ASP n 1 16 GLU n 1 17 LEU n 1 18 TYR n 1 19 GLU n 1 20 SER n 1 21 ALA n 1 22 LYS n 1 23 LYS n 1 24 GLN n 1 25 SER n 1 26 GLY n 1 27 GLY n 1 28 LYS n 1 29 VAL n 1 30 ALA n 1 31 ASP n 1 32 TYR n 1 33 ILE n 1 34 PRO n 1 35 GLN n 1 36 LEU n 1 37 ALA n 1 38 LYS n 1 39 PHE n 1 40 SER n 1 41 PRO n 1 42 ASP n 1 43 LEU n 1 44 TRP n 1 45 GLY n 1 46 VAL n 1 47 SER n 1 48 VAL n 1 49 CYS n 1 50 THR n 1 51 VAL n 1 52 ASP n 1 53 GLY n 1 54 GLN n 1 55 ARG n 1 56 HIS n 1 57 SER n 1 58 THR n 1 59 GLY n 1 60 ASP n 1 61 THR n 1 62 LYS n 1 63 VAL n 1 64 PRO n 1 65 PHE n 1 66 CYS n 1 67 LEU n 1 68 GLN n 1 69 SER n 1 70 CYS n 1 71 VAL n 1 72 LYS n 1 73 PRO n 1 74 LEU n 1 75 LYS n 1 76 TYR n 1 77 ALA n 1 78 ILE n 1 79 ALA n 1 80 VAL n 1 81 ASN n 1 82 ASP n 1 83 LEU n 1 84 GLY n 1 85 THR n 1 86 GLU n 1 87 TYR n 1 88 VAL n 1 89 HIS n 1 90 ARG n 1 91 TYR n 1 92 VAL n 1 93 GLY n 1 94 LYS n 1 95 GLU n 1 96 PRO n 1 97 SER n 1 98 GLY n 1 99 LEU n 1 100 ARG n 1 101 PHE n 1 102 ASN n 1 103 LYS n 1 104 LEU n 1 105 PHE n 1 106 LEU n 1 107 ASN n 1 108 GLU n 1 109 ASP n 1 110 ASP n 1 111 LYS n 1 112 PRO n 1 113 HIS n 1 114 ASN n 1 115 PRO n 1 116 MET n 1 117 VAL n 1 118 ASN n 1 119 ALA n 1 120 GLY n 1 121 ALA n 1 122 ILE n 1 123 VAL n 1 124 VAL n 1 125 THR n 1 126 SER n 1 127 LEU n 1 128 ILE n 1 129 LYS n 1 130 GLN n 1 131 GLY n 1 132 VAL n 1 133 ASN n 1 134 ASN n 1 135 ALA n 1 136 GLU n 1 137 LYS n 1 138 PHE n 1 139 ASP n 1 140 TYR n 1 141 VAL n 1 142 MET n 1 143 GLN n 1 144 PHE n 1 145 LEU n 1 146 ASN n 1 147 LYS n 1 148 MET n 1 149 ALA n 1 150 GLY n 1 151 ASN n 1 152 GLU n 1 153 TYR n 1 154 VAL n 1 155 GLY n 1 156 PHE n 1 157 SER n 1 158 ASN n 1 159 ALA n 1 160 THR n 1 161 PHE n 1 162 GLN n 1 163 SER n 1 164 GLU n 1 165 ARG n 1 166 GLU n 1 167 SER n 1 168 GLY n 1 169 ASP n 1 170 ARG n 1 171 ASN n 1 172 PHE n 1 173 ALA n 1 174 ILE n 1 175 GLY n 1 176 TYR n 1 177 TYR n 1 178 LEU n 1 179 LYS n 1 180 GLU n 1 181 LYS n 1 182 LYS n 1 183 CYS n 1 184 PHE n 1 185 PRO n 1 186 GLU n 1 187 GLY n 1 188 THR n 1 189 ASP n 1 190 MET n 1 191 VAL n 1 192 GLY n 1 193 ILE n 1 194 LEU n 1 195 ASP n 1 196 PHE n 1 197 TYR n 1 198 PHE n 1 199 GLN n 1 200 LEU n 1 201 CYS n 1 202 SER n 1 203 ILE n 1 204 GLU n 1 205 VAL n 1 206 THR n 1 207 CYS n 1 208 GLU n 1 209 SER n 1 210 ALA n 1 211 SER n 1 212 VAL n 1 213 MET n 1 214 ALA n 1 215 ALA n 1 216 THR n 1 217 LEU n 1 218 ALA n 1 219 ASN n 1 220 GLY n 1 221 GLY n 1 222 PHE n 1 223 CYS n 1 224 PRO n 1 225 ILE n 1 226 THR n 1 227 GLY n 1 228 GLU n 1 229 ARG n 1 230 VAL n 1 231 LEU n 1 232 SER n 1 233 PRO n 1 234 GLU n 1 235 ALA n 1 236 VAL n 1 237 ARG n 1 238 ASN n 1 239 THR n 1 240 LEU n 1 241 SER n 1 242 LEU n 1 243 MET n 1 244 HIS n 1 245 SER n 1 246 CYS n 1 247 GLY n 1 248 MET n 1 249 TYR n 1 250 ASP n 1 251 PHE n 1 252 SER n 1 253 GLY n 1 254 GLN n 1 255 PHE n 1 256 ALA n 1 257 PHE n 1 258 HIS n 1 259 VAL n 1 260 GLY n 1 261 LEU n 1 262 PRO n 1 263 ALA n 1 264 LYS n 1 265 SER n 1 266 GLY n 1 267 VAL n 1 268 ALA n 1 269 GLY n 1 270 GLY n 1 271 ILE n 1 272 LEU n 1 273 LEU n 1 274 VAL n 1 275 VAL n 1 276 PRO n 1 277 ASN n 1 278 VAL n 1 279 MET n 1 280 GLY n 1 281 MET n 1 282 MET n 1 283 CYS n 1 284 TRP n 1 285 SER n 1 286 PRO n 1 287 PRO n 1 288 LEU n 1 289 ASP n 1 290 LYS n 1 291 MET n 1 292 GLY n 1 293 ASN n 1 294 SER n 1 295 VAL n 1 296 LYS n 1 297 GLY n 1 298 ILE n 1 299 HIS n 1 300 PHE n 1 301 CYS n 1 302 HIS n 1 303 ASP n 1 304 LEU n 1 305 VAL n 1 306 SER n 1 307 LEU n 1 308 CYS n 1 309 ASN n 1 310 PHE n 1 311 HIS n 1 312 ASN n 1 313 TYR n 1 314 ASP n 1 315 ASN n 1 316 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GLS, GLS1, KIAA0838' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLSK_HUMAN _struct_ref.pdbx_db_accession O94925 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IPDFMSFTSHIDELYESAKKQSGGKVADYIPQLAKFSPDLWGVSVCTVDGQRHSTGDTKVPFCLQSCVKPLKYAIAVNDL GTEYVHRYVGKEPSGLRFNKLFLNEDDKPHNPMVNAGAIVVTSLIKQGVNNAEKFDYVMQFLNKMAGNEYVGFSNATFQS ERESGDRNFAIGYYLKEKKCFPEGTDMVGILDFYFQLCSIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLM HSCGMYDFSGQFAFHVGLPAKSGVAGGILLVVPNVMGMMCWSPPLDKMGNSVKGIHFCHDLVSLCNFHNYDNL ; _struct_ref.pdbx_align_begin 221 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VP4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 316 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O94925 _struct_ref_seq.db_align_beg 221 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 533 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 221 _struct_ref_seq.pdbx_auth_seq_align_end 533 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VP4 GLN A 1 ? UNP O94925 ? ? 'EXPRESSION TAG' 218 1 1 3VP4 SER A 2 ? UNP O94925 ? ? 'EXPRESSION TAG' 219 2 1 3VP4 MET A 3 ? UNP O94925 ? ? 'EXPRESSION TAG' 220 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BP9 non-polymer . "5,5'-butane-1,4-diylbis(1,3,4-thiadiazol-2-amine)" ? 'C8 H12 N6 S2' 256.351 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VP4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '1.65M Lithium sulfate, 100mM Bis-tris-propane pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-12-20 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3VP4 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.45 _reflns.number_obs 28767 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3VP4 _refine.ls_number_reflns_obs 22751 _refine.ls_number_reflns_all 24730 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 2.45 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1975 _refine.ls_R_factor_R_free 0.2162 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1979 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 3CZD _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2395 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 87 _refine_hist.number_atoms_total 2490 _refine_hist.d_res_high 2.45 _refine_hist.d_res_low 30 # _struct.entry_id 3VP4 _struct.title 'Crystal structure of human glutaminase in complex with inhibitor 4' _struct.pdbx_descriptor 'Glutaminase kidney isoform, mitochondrial (E.C.3.5.1.2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VP4 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? LYS A 23 ? ASP A 223 LYS A 240 1 ? 18 HELX_P HELX_P2 2 ILE A 33 ? LYS A 38 ? ILE A 250 LYS A 255 1 ? 6 HELX_P HELX_P3 3 CYS A 70 ? HIS A 89 ? CYS A 287 HIS A 306 1 ? 20 HELX_P HELX_P4 4 VAL A 117 ? SER A 126 ? VAL A 334 SER A 343 1 ? 10 HELX_P HELX_P5 5 ASN A 133 ? ALA A 149 ? ASN A 350 ALA A 366 1 ? 17 HELX_P HELX_P6 6 SER A 157 ? GLU A 166 ? SER A 374 GLU A 383 1 ? 10 HELX_P HELX_P7 7 GLY A 168 ? LYS A 181 ? GLY A 385 LYS A 398 1 ? 14 HELX_P HELX_P8 8 ASP A 189 ? SER A 202 ? ASP A 406 SER A 419 1 ? 14 HELX_P HELX_P9 9 THR A 206 ? ASN A 219 ? THR A 423 ASN A 436 1 ? 14 HELX_P HELX_P10 10 SER A 232 ? GLY A 247 ? SER A 449 GLY A 464 1 ? 16 HELX_P HELX_P11 11 MET A 248 ? ASP A 250 ? MET A 465 ASP A 467 5 ? 3 HELX_P HELX_P12 12 PHE A 251 ? VAL A 259 ? PHE A 468 VAL A 476 1 ? 9 HELX_P HELX_P13 13 SER A 294 ? ASN A 309 ? SER A 511 ASN A 526 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 28 ? VAL A 29 ? LYS A 245 VAL A 246 A 2 PRO A 287 ? LEU A 288 ? PRO A 504 LEU A 505 B 1 ARG A 55 ? GLY A 59 ? ARG A 272 GLY A 276 B 2 GLY A 45 ? THR A 50 ? GLY A 262 THR A 267 B 3 MET A 279 ? TRP A 284 ? MET A 496 TRP A 501 B 4 GLY A 270 ? VAL A 275 ? GLY A 487 VAL A 492 B 5 ALA A 263 ? SER A 265 ? ALA A 480 SER A 482 C 1 PHE A 65 ? CYS A 66 ? PHE A 282 CYS A 283 C 2 ILE A 203 ? VAL A 205 ? ILE A 420 VAL A 422 C 3 GLY A 155 ? PHE A 156 ? GLY A 372 PHE A 373 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 28 ? N LYS A 245 O LEU A 288 ? O LEU A 505 B 1 2 O HIS A 56 ? O HIS A 273 N VAL A 48 ? N VAL A 265 B 2 3 N CYS A 49 ? N CYS A 266 O GLY A 280 ? O GLY A 497 B 3 4 O MET A 279 ? O MET A 496 N VAL A 275 ? N VAL A 492 B 4 5 O LEU A 272 ? O LEU A 489 N LYS A 264 ? N LYS A 481 C 1 2 N PHE A 65 ? N PHE A 282 O VAL A 205 ? O VAL A 422 C 2 3 O GLU A 204 ? O GLU A 421 N GLY A 155 ? N GLY A 372 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE BP9 A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 102 ? ASN A 319 . ? 8_555 ? 2 AC1 5 LEU A 104 ? LEU A 321 . ? 1_555 ? 3 AC1 5 PHE A 105 ? PHE A 322 . ? 1_555 ? 4 AC1 5 LEU A 106 ? LEU A 323 . ? 1_555 ? 5 AC1 5 TYR A 177 ? TYR A 394 . ? 1_555 ? # _database_PDB_matrix.entry_id 3VP4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VP4 _atom_sites.fract_transf_matrix[1][1] 0.007166 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007166 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006375 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 218 218 GLN GLN A . n A 1 2 SER 2 219 219 SER SER A . n A 1 3 MET 3 220 220 MET MET A . n A 1 4 ILE 4 221 221 ILE ALA A . n A 1 5 PRO 5 222 222 PRO PRO A . n A 1 6 ASP 6 223 223 ASP ASP A . n A 1 7 PHE 7 224 224 PHE PHE A . n A 1 8 MET 8 225 225 MET MET A . n A 1 9 SER 9 226 226 SER SER A . n A 1 10 PHE 10 227 227 PHE PHE A . n A 1 11 THR 11 228 228 THR THR A . n A 1 12 SER 12 229 229 SER SER A . n A 1 13 HIS 13 230 230 HIS HIS A . n A 1 14 ILE 14 231 231 ILE ILE A . n A 1 15 ASP 15 232 232 ASP ASP A . n A 1 16 GLU 16 233 233 GLU GLU A . n A 1 17 LEU 17 234 234 LEU LEU A . n A 1 18 TYR 18 235 235 TYR TYR A . n A 1 19 GLU 19 236 236 GLU GLU A . n A 1 20 SER 20 237 237 SER SER A . n A 1 21 ALA 21 238 238 ALA ALA A . n A 1 22 LYS 22 239 239 LYS LYS A . n A 1 23 LYS 23 240 240 LYS LYS A . n A 1 24 GLN 24 241 241 GLN GLN A . n A 1 25 SER 25 242 242 SER SER A . n A 1 26 GLY 26 243 243 GLY GLY A . n A 1 27 GLY 27 244 244 GLY GLY A . n A 1 28 LYS 28 245 245 LYS LYS A . n A 1 29 VAL 29 246 246 VAL VAL A . n A 1 30 ALA 30 247 247 ALA ALA A . n A 1 31 ASP 31 248 248 ASP ASP A . n A 1 32 TYR 32 249 249 TYR TYR A . n A 1 33 ILE 33 250 250 ILE ILE A . n A 1 34 PRO 34 251 251 PRO PRO A . n A 1 35 GLN 35 252 252 GLN GLN A . n A 1 36 LEU 36 253 253 LEU LEU A . n A 1 37 ALA 37 254 254 ALA ALA A . n A 1 38 LYS 38 255 255 LYS LYS A . n A 1 39 PHE 39 256 256 PHE PHE A . n A 1 40 SER 40 257 257 SER SER A . n A 1 41 PRO 41 258 258 PRO PRO A . n A 1 42 ASP 42 259 259 ASP ASP A . n A 1 43 LEU 43 260 260 LEU LEU A . n A 1 44 TRP 44 261 261 TRP TRP A . n A 1 45 GLY 45 262 262 GLY GLY A . n A 1 46 VAL 46 263 263 VAL VAL A . n A 1 47 SER 47 264 264 SER SER A . n A 1 48 VAL 48 265 265 VAL VAL A . n A 1 49 CYS 49 266 266 CYS CYS A . n A 1 50 THR 50 267 267 THR THR A . n A 1 51 VAL 51 268 268 VAL VAL A . n A 1 52 ASP 52 269 269 ASP ASP A . n A 1 53 GLY 53 270 270 GLY GLY A . n A 1 54 GLN 54 271 271 GLN GLN A . n A 1 55 ARG 55 272 272 ARG ARG A . n A 1 56 HIS 56 273 273 HIS HIS A . n A 1 57 SER 57 274 274 SER SER A . n A 1 58 THR 58 275 275 THR THR A . n A 1 59 GLY 59 276 276 GLY GLY A . n A 1 60 ASP 60 277 277 ASP ASP A . n A 1 61 THR 61 278 278 THR THR A . n A 1 62 LYS 62 279 279 LYS LYS A . n A 1 63 VAL 63 280 280 VAL VAL A . n A 1 64 PRO 64 281 281 PRO PRO A . n A 1 65 PHE 65 282 282 PHE PHE A . n A 1 66 CYS 66 283 283 CYS CYS A . n A 1 67 LEU 67 284 284 LEU LEU A . n A 1 68 GLN 68 285 285 GLN GLN A . n A 1 69 SER 69 286 286 SER SER A . n A 1 70 CYS 70 287 287 CYS CYS A . n A 1 71 VAL 71 288 288 VAL VAL A . n A 1 72 LYS 72 289 289 LYS LYS A . n A 1 73 PRO 73 290 290 PRO PRO A . n A 1 74 LEU 74 291 291 LEU LEU A . n A 1 75 LYS 75 292 292 LYS LYS A . n A 1 76 TYR 76 293 293 TYR TYR A . n A 1 77 ALA 77 294 294 ALA ALA A . n A 1 78 ILE 78 295 295 ILE ILE A . n A 1 79 ALA 79 296 296 ALA ALA A . n A 1 80 VAL 80 297 297 VAL VAL A . n A 1 81 ASN 81 298 298 ASN ASN A . n A 1 82 ASP 82 299 299 ASP ASP A . n A 1 83 LEU 83 300 300 LEU LEU A . n A 1 84 GLY 84 301 301 GLY GLY A . n A 1 85 THR 85 302 302 THR THR A . n A 1 86 GLU 86 303 303 GLU GLU A . n A 1 87 TYR 87 304 304 TYR TYR A . n A 1 88 VAL 88 305 305 VAL VAL A . n A 1 89 HIS 89 306 306 HIS HIS A . n A 1 90 ARG 90 307 307 ARG ARG A . n A 1 91 TYR 91 308 308 TYR TYR A . n A 1 92 VAL 92 309 309 VAL VAL A . n A 1 93 GLY 93 310 310 GLY GLY A . n A 1 94 LYS 94 311 311 LYS LYS A . n A 1 95 GLU 95 312 312 GLU GLU A . n A 1 96 PRO 96 313 313 PRO PRO A . n A 1 97 SER 97 314 314 SER SER A . n A 1 98 GLY 98 315 315 GLY GLY A . n A 1 99 LEU 99 316 316 LEU LEU A . n A 1 100 ARG 100 317 ? ? ? A . n A 1 101 PHE 101 318 ? ? ? A . n A 1 102 ASN 102 319 319 ASN ASN A . n A 1 103 LYS 103 320 320 LYS LYS A . n A 1 104 LEU 104 321 321 LEU LEU A . n A 1 105 PHE 105 322 322 PHE PHE A . n A 1 106 LEU 106 323 323 LEU LEU A . n A 1 107 ASN 107 324 324 ASN ASN A . n A 1 108 GLU 108 325 325 GLU GLU A . n A 1 109 ASP 109 326 326 ASP ASP A . n A 1 110 ASP 110 327 327 ASP ASP A . n A 1 111 LYS 111 328 328 LYS LYS A . n A 1 112 PRO 112 329 329 PRO PRO A . n A 1 113 HIS 113 330 330 HIS HIS A . n A 1 114 ASN 114 331 331 ASN ASN A . n A 1 115 PRO 115 332 332 PRO PRO A . n A 1 116 MET 116 333 333 MET MET A . n A 1 117 VAL 117 334 334 VAL VAL A . n A 1 118 ASN 118 335 335 ASN ASN A . n A 1 119 ALA 119 336 336 ALA ALA A . n A 1 120 GLY 120 337 337 GLY GLY A . n A 1 121 ALA 121 338 338 ALA ALA A . n A 1 122 ILE 122 339 339 ILE ILE A . n A 1 123 VAL 123 340 340 VAL VAL A . n A 1 124 VAL 124 341 341 VAL VAL A . n A 1 125 THR 125 342 342 THR THR A . n A 1 126 SER 126 343 343 SER SER A . n A 1 127 LEU 127 344 344 LEU LEU A . n A 1 128 ILE 128 345 345 ILE ILE A . n A 1 129 LYS 129 346 346 LYS LYS A . n A 1 130 GLN 130 347 347 GLN GLN A . n A 1 131 GLY 131 348 348 GLY GLY A . n A 1 132 VAL 132 349 349 VAL VAL A . n A 1 133 ASN 133 350 350 ASN ASN A . n A 1 134 ASN 134 351 351 ASN ASN A . n A 1 135 ALA 135 352 352 ALA ALA A . n A 1 136 GLU 136 353 353 GLU GLU A . n A 1 137 LYS 137 354 354 LYS LYS A . n A 1 138 PHE 138 355 355 PHE PHE A . n A 1 139 ASP 139 356 356 ASP ASP A . n A 1 140 TYR 140 357 357 TYR TYR A . n A 1 141 VAL 141 358 358 VAL VAL A . n A 1 142 MET 142 359 359 MET MET A . n A 1 143 GLN 143 360 360 GLN GLN A . n A 1 144 PHE 144 361 361 PHE PHE A . n A 1 145 LEU 145 362 362 LEU LEU A . n A 1 146 ASN 146 363 363 ASN ASN A . n A 1 147 LYS 147 364 364 LYS LYS A . n A 1 148 MET 148 365 365 MET MET A . n A 1 149 ALA 149 366 366 ALA ALA A . n A 1 150 GLY 150 367 367 GLY GLY A . n A 1 151 ASN 151 368 368 ASN ASN A . n A 1 152 GLU 152 369 369 GLU GLU A . n A 1 153 TYR 153 370 370 TYR TYR A . n A 1 154 VAL 154 371 371 VAL VAL A . n A 1 155 GLY 155 372 372 GLY GLY A . n A 1 156 PHE 156 373 373 PHE PHE A . n A 1 157 SER 157 374 374 SER SER A . n A 1 158 ASN 158 375 375 ASN ASN A . n A 1 159 ALA 159 376 376 ALA ALA A . n A 1 160 THR 160 377 377 THR THR A . n A 1 161 PHE 161 378 378 PHE PHE A . n A 1 162 GLN 162 379 379 GLN GLN A . n A 1 163 SER 163 380 380 SER SER A . n A 1 164 GLU 164 381 381 GLU GLU A . n A 1 165 ARG 165 382 382 ARG ARG A . n A 1 166 GLU 166 383 383 GLU GLU A . n A 1 167 SER 167 384 384 SER SER A . n A 1 168 GLY 168 385 385 GLY GLY A . n A 1 169 ASP 169 386 386 ASP ASP A . n A 1 170 ARG 170 387 387 ARG ARG A . n A 1 171 ASN 171 388 388 ASN ASN A . n A 1 172 PHE 172 389 389 PHE PHE A . n A 1 173 ALA 173 390 390 ALA ALA A . n A 1 174 ILE 174 391 391 ILE ILE A . n A 1 175 GLY 175 392 392 GLY GLY A . n A 1 176 TYR 176 393 393 TYR TYR A . n A 1 177 TYR 177 394 394 TYR TYR A . n A 1 178 LEU 178 395 395 LEU LEU A . n A 1 179 LYS 179 396 396 LYS LYS A . n A 1 180 GLU 180 397 397 GLU GLU A . n A 1 181 LYS 181 398 398 LYS LYS A . n A 1 182 LYS 182 399 399 LYS LYS A . n A 1 183 CYS 183 400 400 CYS CYS A . n A 1 184 PHE 184 401 401 PHE PHE A . n A 1 185 PRO 185 402 402 PRO PRO A . n A 1 186 GLU 186 403 403 GLU GLU A . n A 1 187 GLY 187 404 404 GLY GLY A . n A 1 188 THR 188 405 405 THR THR A . n A 1 189 ASP 189 406 406 ASP ASP A . n A 1 190 MET 190 407 407 MET MET A . n A 1 191 VAL 191 408 408 VAL VAL A . n A 1 192 GLY 192 409 409 GLY GLY A . n A 1 193 ILE 193 410 410 ILE ILE A . n A 1 194 LEU 194 411 411 LEU LEU A . n A 1 195 ASP 195 412 412 ASP ASP A . n A 1 196 PHE 196 413 413 PHE PHE A . n A 1 197 TYR 197 414 414 TYR TYR A . n A 1 198 PHE 198 415 415 PHE PHE A . n A 1 199 GLN 199 416 416 GLN GLN A . n A 1 200 LEU 200 417 417 LEU LEU A . n A 1 201 CYS 201 418 418 CYS CYS A . n A 1 202 SER 202 419 419 SER SER A . n A 1 203 ILE 203 420 420 ILE ILE A . n A 1 204 GLU 204 421 421 GLU GLU A . n A 1 205 VAL 205 422 422 VAL VAL A . n A 1 206 THR 206 423 423 THR THR A . n A 1 207 CYS 207 424 424 CYS CYS A . n A 1 208 GLU 208 425 425 GLU GLU A . n A 1 209 SER 209 426 426 SER SER A . n A 1 210 ALA 210 427 427 ALA ALA A . n A 1 211 SER 211 428 428 SER SER A . n A 1 212 VAL 212 429 429 VAL VAL A . n A 1 213 MET 213 430 430 MET MET A . n A 1 214 ALA 214 431 431 ALA ALA A . n A 1 215 ALA 215 432 432 ALA ALA A . n A 1 216 THR 216 433 433 THR THR A . n A 1 217 LEU 217 434 434 LEU LEU A . n A 1 218 ALA 218 435 435 ALA ALA A . n A 1 219 ASN 219 436 436 ASN ASN A . n A 1 220 GLY 220 437 437 GLY GLY A . n A 1 221 GLY 221 438 438 GLY GLY A . n A 1 222 PHE 222 439 439 PHE PHE A . n A 1 223 CYS 223 440 440 CYS CYS A . n A 1 224 PRO 224 441 441 PRO PRO A . n A 1 225 ILE 225 442 442 ILE ILE A . n A 1 226 THR 226 443 443 THR THR A . n A 1 227 GLY 227 444 444 GLY GLY A . n A 1 228 GLU 228 445 445 GLU GLU A . n A 1 229 ARG 229 446 446 ARG ARG A . n A 1 230 VAL 230 447 447 VAL VAL A . n A 1 231 LEU 231 448 448 LEU LEU A . n A 1 232 SER 232 449 449 SER SER A . n A 1 233 PRO 233 450 450 PRO PRO A . n A 1 234 GLU 234 451 451 GLU GLU A . n A 1 235 ALA 235 452 452 ALA ALA A . n A 1 236 VAL 236 453 453 VAL VAL A . n A 1 237 ARG 237 454 454 ARG ARG A . n A 1 238 ASN 238 455 455 ASN ASN A . n A 1 239 THR 239 456 456 THR THR A . n A 1 240 LEU 240 457 457 LEU LEU A . n A 1 241 SER 241 458 458 SER SER A . n A 1 242 LEU 242 459 459 LEU LEU A . n A 1 243 MET 243 460 460 MET MET A . n A 1 244 HIS 244 461 461 HIS HIS A . n A 1 245 SER 245 462 462 SER SER A . n A 1 246 CYS 246 463 463 CYS CYS A . n A 1 247 GLY 247 464 464 GLY GLY A . n A 1 248 MET 248 465 465 MET MET A . n A 1 249 TYR 249 466 466 TYR TYR A . n A 1 250 ASP 250 467 467 ASP ASP A . n A 1 251 PHE 251 468 468 PHE PHE A . n A 1 252 SER 252 469 469 SER SER A . n A 1 253 GLY 253 470 470 GLY GLY A . n A 1 254 GLN 254 471 471 GLN GLN A . n A 1 255 PHE 255 472 472 PHE PHE A . n A 1 256 ALA 256 473 473 ALA ALA A . n A 1 257 PHE 257 474 474 PHE PHE A . n A 1 258 HIS 258 475 475 HIS HIS A . n A 1 259 VAL 259 476 476 VAL VAL A . n A 1 260 GLY 260 477 477 GLY GLY A . n A 1 261 LEU 261 478 478 LEU LEU A . n A 1 262 PRO 262 479 479 PRO PRO A . n A 1 263 ALA 263 480 480 ALA ALA A . n A 1 264 LYS 264 481 481 LYS LYS A . n A 1 265 SER 265 482 482 SER SER A . n A 1 266 GLY 266 483 483 GLY GLY A . n A 1 267 VAL 267 484 484 VAL VAL A . n A 1 268 ALA 268 485 485 ALA ALA A . n A 1 269 GLY 269 486 486 GLY GLY A . n A 1 270 GLY 270 487 487 GLY GLY A . n A 1 271 ILE 271 488 488 ILE ILE A . n A 1 272 LEU 272 489 489 LEU LEU A . n A 1 273 LEU 273 490 490 LEU LEU A . n A 1 274 VAL 274 491 491 VAL VAL A . n A 1 275 VAL 275 492 492 VAL VAL A . n A 1 276 PRO 276 493 493 PRO PRO A . n A 1 277 ASN 277 494 494 ASN ASN A . n A 1 278 VAL 278 495 495 VAL VAL A . n A 1 279 MET 279 496 496 MET MET A . n A 1 280 GLY 280 497 497 GLY GLY A . n A 1 281 MET 281 498 498 MET MET A . n A 1 282 MET 282 499 499 MET MET A . n A 1 283 CYS 283 500 500 CYS CYS A . n A 1 284 TRP 284 501 501 TRP TRP A . n A 1 285 SER 285 502 502 SER SER A . n A 1 286 PRO 286 503 503 PRO PRO A . n A 1 287 PRO 287 504 504 PRO PRO A . n A 1 288 LEU 288 505 505 LEU LEU A . n A 1 289 ASP 289 506 506 ASP ASP A . n A 1 290 LYS 290 507 507 LYS LYS A . n A 1 291 MET 291 508 508 MET MET A . n A 1 292 GLY 292 509 509 GLY GLY A . n A 1 293 ASN 293 510 510 ASN ASN A . n A 1 294 SER 294 511 511 SER SER A . n A 1 295 VAL 295 512 512 VAL VAL A . n A 1 296 LYS 296 513 513 LYS LYS A . n A 1 297 GLY 297 514 514 GLY GLY A . n A 1 298 ILE 298 515 515 ILE ILE A . n A 1 299 HIS 299 516 516 HIS HIS A . n A 1 300 PHE 300 517 517 PHE PHE A . n A 1 301 CYS 301 518 518 CYS CYS A . n A 1 302 HIS 302 519 519 HIS HIS A . n A 1 303 ASP 303 520 520 ASP ASP A . n A 1 304 LEU 304 521 521 LEU LEU A . n A 1 305 VAL 305 522 522 VAL VAL A . n A 1 306 SER 306 523 523 SER SER A . n A 1 307 LEU 307 524 524 LEU LEU A . n A 1 308 CYS 308 525 525 CYS CYS A . n A 1 309 ASN 309 526 526 ASN ASN A . n A 1 310 PHE 310 527 527 PHE PHE A . n A 1 311 HIS 311 528 528 HIS HIS A . n A 1 312 ASN 312 529 529 ASN ASN A . n A 1 313 TYR 313 530 530 TYR TYR A . n A 1 314 ASP 314 531 531 ASP ASP A . n A 1 315 ASN 315 532 ? ? ? A . n A 1 316 LEU 316 533 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6770 ? 1 MORE -44 ? 1 'SSA (A^2)' 44750 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 10_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 15_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-13 2 'Structure model' 1 1 2012-06-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Structure summary' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 C32 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 BP9 _pdbx_validate_symm_contact.auth_seq_id_1 601 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 C32 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 BP9 _pdbx_validate_symm_contact.auth_seq_id_2 601 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_555 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 219 ? ? -59.96 84.96 2 1 MET A 220 ? ? -49.67 -109.15 3 1 PRO A 222 ? ? -50.92 -70.13 4 1 ASP A 248 ? ? -147.37 24.80 5 1 HIS A 273 ? ? -174.74 127.94 6 1 GLN A 285 ? ? 55.92 -128.24 7 1 LYS A 320 ? ? 78.53 76.44 8 1 GLU A 383 ? ? -75.40 40.37 9 1 SER A 384 ? ? -164.70 -11.47 10 1 ASN A 436 ? ? -99.44 34.70 11 1 THR A 443 ? ? -142.27 -13.94 12 1 TYR A 466 ? ? 51.35 -140.42 13 1 VAL A 495 ? ? -131.52 -58.06 14 1 SER A 502 ? ? -168.85 106.08 15 1 PRO A 503 ? ? -38.46 -38.45 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 221 ? CG1 ? A ILE 4 CG1 2 1 Y 1 A ILE 221 ? CG2 ? A ILE 4 CG2 3 1 Y 1 A ILE 221 ? CD1 ? A ILE 4 CD1 4 1 N 1 A BP9 601 ? C1 ? B BP9 1 C1 5 1 N 1 A BP9 601 ? C2 ? B BP9 1 C2 6 1 N 1 A BP9 601 ? C3 ? B BP9 1 C3 7 1 N 1 A BP9 601 ? N1 ? B BP9 1 N1 8 1 N 1 A BP9 601 ? N2 ? B BP9 1 N2 9 1 N 1 A BP9 601 ? C6 ? B BP9 1 C6 10 1 N 1 A BP9 601 ? S1 ? B BP9 1 S1 11 1 N 1 A BP9 601 ? N3 ? B BP9 1 N3 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 317 ? A ARG 100 2 1 Y 1 A PHE 318 ? A PHE 101 3 1 Y 1 A ASN 532 ? A ASN 315 4 1 Y 1 A LEU 533 ? A LEU 316 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5,5'-butane-1,4-diylbis(1,3,4-thiadiazol-2-amine)" BP9 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BP9 1 601 1 BP9 BP A . C 3 HOH 1 701 532 HOH HOH A . C 3 HOH 2 702 533 HOH HOH A . C 3 HOH 3 703 534 HOH HOH A . C 3 HOH 4 704 535 HOH HOH A . C 3 HOH 5 705 536 HOH HOH A . C 3 HOH 6 706 537 HOH HOH A . C 3 HOH 7 707 538 HOH HOH A . C 3 HOH 8 708 539 HOH HOH A . C 3 HOH 9 709 540 HOH HOH A . C 3 HOH 10 710 541 HOH HOH A . C 3 HOH 11 711 542 HOH HOH A . C 3 HOH 12 712 543 HOH HOH A . C 3 HOH 13 713 544 HOH HOH A . C 3 HOH 14 714 545 HOH HOH A . C 3 HOH 15 715 546 HOH HOH A . C 3 HOH 16 716 547 HOH HOH A . C 3 HOH 17 717 548 HOH HOH A . C 3 HOH 18 718 549 HOH HOH A . C 3 HOH 19 719 550 HOH HOH A . C 3 HOH 20 720 551 HOH HOH A . C 3 HOH 21 721 552 HOH HOH A . C 3 HOH 22 722 553 HOH HOH A . C 3 HOH 23 723 554 HOH HOH A . C 3 HOH 24 724 555 HOH HOH A . C 3 HOH 25 725 556 HOH HOH A . C 3 HOH 26 726 557 HOH HOH A . C 3 HOH 27 727 558 HOH HOH A . C 3 HOH 28 728 559 HOH HOH A . C 3 HOH 29 729 560 HOH HOH A . C 3 HOH 30 730 561 HOH HOH A . C 3 HOH 31 731 562 HOH HOH A . C 3 HOH 32 732 563 HOH HOH A . C 3 HOH 33 733 564 HOH HOH A . C 3 HOH 34 734 565 HOH HOH A . C 3 HOH 35 735 566 HOH HOH A . C 3 HOH 36 736 567 HOH HOH A . C 3 HOH 37 737 568 HOH HOH A . C 3 HOH 38 738 569 HOH HOH A . C 3 HOH 39 739 570 HOH HOH A . C 3 HOH 40 740 571 HOH HOH A . C 3 HOH 41 741 572 HOH HOH A . C 3 HOH 42 742 573 HOH HOH A . C 3 HOH 43 743 574 HOH HOH A . C 3 HOH 44 744 575 HOH HOH A . C 3 HOH 45 745 576 HOH HOH A . C 3 HOH 46 746 577 HOH HOH A . C 3 HOH 47 747 578 HOH HOH A . C 3 HOH 48 748 579 HOH HOH A . C 3 HOH 49 749 580 HOH HOH A . C 3 HOH 50 750 581 HOH HOH A . C 3 HOH 51 751 582 HOH HOH A . C 3 HOH 52 752 583 HOH HOH A . C 3 HOH 53 753 584 HOH HOH A . C 3 HOH 54 754 585 HOH HOH A . C 3 HOH 55 755 586 HOH HOH A . C 3 HOH 56 756 587 HOH HOH A . C 3 HOH 57 757 588 HOH HOH A . C 3 HOH 58 758 589 HOH HOH A . C 3 HOH 59 759 590 HOH HOH A . C 3 HOH 60 760 591 HOH HOH A . C 3 HOH 61 761 592 HOH HOH A . C 3 HOH 62 762 593 HOH HOH A . C 3 HOH 63 763 594 HOH HOH A . C 3 HOH 64 764 595 HOH HOH A . C 3 HOH 65 765 596 HOH HOH A . C 3 HOH 66 766 597 HOH HOH A . C 3 HOH 67 767 598 HOH HOH A . C 3 HOH 68 768 599 HOH HOH A . C 3 HOH 69 769 600 HOH HOH A . C 3 HOH 70 770 601 HOH HOH A . C 3 HOH 71 771 602 HOH HOH A . C 3 HOH 72 772 603 HOH HOH A . C 3 HOH 73 773 604 HOH HOH A . C 3 HOH 74 774 605 HOH HOH A . C 3 HOH 75 775 606 HOH HOH A . C 3 HOH 76 776 607 HOH HOH A . C 3 HOH 77 777 608 HOH HOH A . C 3 HOH 78 778 609 HOH HOH A . C 3 HOH 79 779 610 HOH HOH A . C 3 HOH 80 780 611 HOH HOH A . C 3 HOH 81 781 612 HOH HOH A . C 3 HOH 82 782 613 HOH HOH A . C 3 HOH 83 783 614 HOH HOH A . C 3 HOH 84 784 615 HOH HOH A . C 3 HOH 85 785 616 HOH HOH A . C 3 HOH 86 786 617 HOH HOH A . C 3 HOH 87 787 618 HOH HOH A . #