data_3VP8 # _entry.id 3VP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VP8 pdb_00003vp8 10.2210/pdb3vp8/pdb RCSB RCSB095328 ? ? WWPDB D_1000095328 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-13 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VP8 _pdbx_database_status.recvd_initial_deposition_date 2012-02-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3VP9 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matsumura, H.' 1 'Kusaka, N.' 2 'Nakamura, T.' 3 'Tanaka, N.' 4 'Sagegami, K.' 5 'Uegaki, K.' 6 'Inoue, T.' 7 'Mukai, Y.' 8 # _citation.id primary _citation.title 'Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 26528 _citation.page_last 26538 _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22707714 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.369652 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matsumura, H.' 1 ? primary 'Kusaka, N.' 2 ? primary 'Nakamura, T.' 3 ? primary 'Tanaka, N.' 4 ? primary 'Sagegami, K.' 5 ? primary 'Uegaki, K.' 6 ? primary 'Inoue, T.' 7 ? primary 'Mukai, Y.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'General transcriptional corepressor TUP1' 11042.381 4 ? ? 'N-terminal domain' ? 2 water nat water 18.015 212 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Flocculation suppressor protein, Glucose repression regulatory protein TUP1, Repressor AER2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTASVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYELELTHRKMKDAYEEEIKHL KLGLEQRDHQIA ; _entity_poly.pdbx_seq_one_letter_code_can ;MTASVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYELELTHRKMKDAYEEEIKHL KLGLEQRDHQIA ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ALA n 1 4 SER n 1 5 VAL n 1 6 SER n 1 7 ASN n 1 8 THR n 1 9 GLN n 1 10 ASN n 1 11 LYS n 1 12 LEU n 1 13 ASN n 1 14 GLU n 1 15 LEU n 1 16 LEU n 1 17 ASP n 1 18 ALA n 1 19 ILE n 1 20 ARG n 1 21 GLN n 1 22 GLU n 1 23 PHE n 1 24 LEU n 1 25 GLN n 1 26 VAL n 1 27 SER n 1 28 GLN n 1 29 GLU n 1 30 ALA n 1 31 ASN n 1 32 THR n 1 33 TYR n 1 34 ARG n 1 35 LEU n 1 36 GLN n 1 37 ASN n 1 38 GLN n 1 39 LYS n 1 40 ASP n 1 41 TYR n 1 42 ASP n 1 43 PHE n 1 44 LYS n 1 45 MET n 1 46 ASN n 1 47 GLN n 1 48 GLN n 1 49 LEU n 1 50 ALA n 1 51 GLU n 1 52 MET n 1 53 GLN n 1 54 GLN n 1 55 ILE n 1 56 ARG n 1 57 ASN n 1 58 THR n 1 59 VAL n 1 60 TYR n 1 61 GLU n 1 62 LEU n 1 63 GLU n 1 64 LEU n 1 65 THR n 1 66 HIS n 1 67 ARG n 1 68 LYS n 1 69 MET n 1 70 LYS n 1 71 ASP n 1 72 ALA n 1 73 TYR n 1 74 GLU n 1 75 GLU n 1 76 GLU n 1 77 ILE n 1 78 LYS n 1 79 HIS n 1 80 LEU n 1 81 LYS n 1 82 LEU n 1 83 GLY n 1 84 LEU n 1 85 GLU n 1 86 GLN n 1 87 ARG n 1 88 ASP n 1 89 HIS n 1 90 GLN n 1 91 ILE n 1 92 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TUP1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain S288c _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 HIS 79 79 ? ? ? A . n A 1 80 LEU 80 80 ? ? ? A . n A 1 81 LYS 81 81 ? ? ? A . n A 1 82 LEU 82 82 ? ? ? A . n A 1 83 GLY 83 83 ? ? ? A . n A 1 84 LEU 84 84 ? ? ? A . n A 1 85 GLU 85 85 ? ? ? A . n A 1 86 GLN 86 86 ? ? ? A . n A 1 87 ARG 87 87 ? ? ? A . n A 1 88 ASP 88 88 ? ? ? A . n A 1 89 HIS 89 89 ? ? ? A . n A 1 90 GLN 90 90 ? ? ? A . n A 1 91 ILE 91 91 ? ? ? A . n A 1 92 ALA 92 92 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 THR 2 2 2 THR THR B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 SER 4 4 4 SER SER B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 ASN 7 7 7 ASN ASN B . n B 1 8 THR 8 8 8 THR THR B . n B 1 9 GLN 9 9 9 GLN GLN B . n B 1 10 ASN 10 10 10 ASN ASN B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ASN 13 13 13 ASN ASN B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 GLN 21 21 21 GLN GLN B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 GLU 29 29 29 GLU GLU B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 ASN 31 31 31 ASN ASN B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 TYR 33 33 33 TYR TYR B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 GLN 36 36 36 GLN GLN B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 GLN 38 38 38 GLN GLN B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 ASP 40 40 40 ASP ASP B . n B 1 41 TYR 41 41 41 TYR TYR B . n B 1 42 ASP 42 42 42 ASP ASP B . n B 1 43 PHE 43 43 43 PHE PHE B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 MET 45 45 45 MET MET B . n B 1 46 ASN 46 46 46 ASN ASN B . n B 1 47 GLN 47 47 47 GLN GLN B . n B 1 48 GLN 48 48 48 GLN GLN B . n B 1 49 LEU 49 49 49 LEU LEU B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 MET 52 52 52 MET MET B . n B 1 53 GLN 53 53 53 GLN GLN B . n B 1 54 GLN 54 54 54 GLN GLN B . n B 1 55 ILE 55 55 55 ILE ILE B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 ASN 57 57 57 ASN ASN B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 TYR 60 60 60 TYR TYR B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 THR 65 65 65 THR THR B . n B 1 66 HIS 66 66 66 HIS HIS B . n B 1 67 ARG 67 67 67 ARG ARG B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 MET 69 69 69 MET MET B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ASP 71 71 71 ASP ASP B . n B 1 72 ALA 72 72 72 ALA ALA B . n B 1 73 TYR 73 73 73 TYR TYR B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 GLU 75 75 75 GLU GLU B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 ILE 77 77 77 ILE ILE B . n B 1 78 LYS 78 78 78 LYS LYS B . n B 1 79 HIS 79 79 79 HIS HIS B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 LYS 81 81 81 LYS LYS B . n B 1 82 LEU 82 82 ? ? ? B . n B 1 83 GLY 83 83 ? ? ? B . n B 1 84 LEU 84 84 ? ? ? B . n B 1 85 GLU 85 85 ? ? ? B . n B 1 86 GLN 86 86 ? ? ? B . n B 1 87 ARG 87 87 ? ? ? B . n B 1 88 ASP 88 88 ? ? ? B . n B 1 89 HIS 89 89 ? ? ? B . n B 1 90 GLN 90 90 ? ? ? B . n B 1 91 ILE 91 91 ? ? ? B . n B 1 92 ALA 92 92 ? ? ? B . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 THR 2 2 ? ? ? C . n C 1 3 ALA 3 3 ? ? ? C . n C 1 4 SER 4 4 4 SER SER C . n C 1 5 VAL 5 5 5 VAL VAL C . n C 1 6 SER 6 6 6 SER SER C . n C 1 7 ASN 7 7 7 ASN ASN C . n C 1 8 THR 8 8 8 THR THR C . n C 1 9 GLN 9 9 9 GLN GLN C . n C 1 10 ASN 10 10 10 ASN ASN C . n C 1 11 LYS 11 11 11 LYS LYS C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 ASN 13 13 13 ASN ASN C . n C 1 14 GLU 14 14 14 GLU GLU C . n C 1 15 LEU 15 15 15 LEU LEU C . n C 1 16 LEU 16 16 16 LEU LEU C . n C 1 17 ASP 17 17 17 ASP ASP C . n C 1 18 ALA 18 18 18 ALA ALA C . n C 1 19 ILE 19 19 19 ILE ILE C . n C 1 20 ARG 20 20 20 ARG ARG C . n C 1 21 GLN 21 21 21 GLN GLN C . n C 1 22 GLU 22 22 22 GLU GLU C . n C 1 23 PHE 23 23 23 PHE PHE C . n C 1 24 LEU 24 24 24 LEU LEU C . n C 1 25 GLN 25 25 25 GLN GLN C . n C 1 26 VAL 26 26 26 VAL VAL C . n C 1 27 SER 27 27 27 SER SER C . n C 1 28 GLN 28 28 28 GLN GLN C . n C 1 29 GLU 29 29 29 GLU GLU C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 ASN 31 31 31 ASN ASN C . n C 1 32 THR 32 32 32 THR THR C . n C 1 33 TYR 33 33 33 TYR TYR C . n C 1 34 ARG 34 34 34 ARG ARG C . n C 1 35 LEU 35 35 35 LEU LEU C . n C 1 36 GLN 36 36 36 GLN GLN C . n C 1 37 ASN 37 37 37 ASN ASN C . n C 1 38 GLN 38 38 38 GLN GLN C . n C 1 39 LYS 39 39 39 LYS LYS C . n C 1 40 ASP 40 40 40 ASP ASP C . n C 1 41 TYR 41 41 41 TYR TYR C . n C 1 42 ASP 42 42 42 ASP ASP C . n C 1 43 PHE 43 43 43 PHE PHE C . n C 1 44 LYS 44 44 44 LYS LYS C . n C 1 45 MET 45 45 45 MET MET C . n C 1 46 ASN 46 46 46 ASN ASN C . n C 1 47 GLN 47 47 47 GLN GLN C . n C 1 48 GLN 48 48 48 GLN GLN C . n C 1 49 LEU 49 49 49 LEU LEU C . n C 1 50 ALA 50 50 50 ALA ALA C . n C 1 51 GLU 51 51 51 GLU GLU C . n C 1 52 MET 52 52 52 MET MET C . n C 1 53 GLN 53 53 53 GLN GLN C . n C 1 54 GLN 54 54 54 GLN GLN C . n C 1 55 ILE 55 55 55 ILE ILE C . n C 1 56 ARG 56 56 56 ARG ARG C . n C 1 57 ASN 57 57 57 ASN ASN C . n C 1 58 THR 58 58 58 THR THR C . n C 1 59 VAL 59 59 59 VAL VAL C . n C 1 60 TYR 60 60 60 TYR TYR C . n C 1 61 GLU 61 61 61 GLU GLU C . n C 1 62 LEU 62 62 62 LEU LEU C . n C 1 63 GLU 63 63 63 GLU GLU C . n C 1 64 LEU 64 64 64 LEU LEU C . n C 1 65 THR 65 65 65 THR THR C . n C 1 66 HIS 66 66 66 HIS HIS C . n C 1 67 ARG 67 67 67 ARG ARG C . n C 1 68 LYS 68 68 68 LYS LYS C . n C 1 69 MET 69 69 69 MET MET C . n C 1 70 LYS 70 70 70 LYS LYS C . n C 1 71 ASP 71 71 71 ASP ASP C . n C 1 72 ALA 72 72 72 ALA ALA C . n C 1 73 TYR 73 73 73 TYR TYR C . n C 1 74 GLU 74 74 74 GLU GLU C . n C 1 75 GLU 75 75 75 GLU GLU C . n C 1 76 GLU 76 76 76 GLU GLU C . n C 1 77 ILE 77 77 77 ILE ILE C . n C 1 78 LYS 78 78 78 LYS LYS C . n C 1 79 HIS 79 79 79 HIS HIS C . n C 1 80 LEU 80 80 80 LEU LEU C . n C 1 81 LYS 81 81 ? ? ? C . n C 1 82 LEU 82 82 ? ? ? C . n C 1 83 GLY 83 83 ? ? ? C . n C 1 84 LEU 84 84 ? ? ? C . n C 1 85 GLU 85 85 ? ? ? C . n C 1 86 GLN 86 86 ? ? ? C . n C 1 87 ARG 87 87 ? ? ? C . n C 1 88 ASP 88 88 ? ? ? C . n C 1 89 HIS 89 89 ? ? ? C . n C 1 90 GLN 90 90 ? ? ? C . n C 1 91 ILE 91 91 ? ? ? C . n C 1 92 ALA 92 92 ? ? ? C . n D 1 1 MET 1 1 ? ? ? D . n D 1 2 THR 2 2 2 THR THR D . n D 1 3 ALA 3 3 3 ALA ALA D . n D 1 4 SER 4 4 4 SER SER D . n D 1 5 VAL 5 5 5 VAL VAL D . n D 1 6 SER 6 6 6 SER SER D . n D 1 7 ASN 7 7 7 ASN ASN D . n D 1 8 THR 8 8 8 THR THR D . n D 1 9 GLN 9 9 9 GLN GLN D . n D 1 10 ASN 10 10 10 ASN ASN D . n D 1 11 LYS 11 11 11 LYS LYS D . n D 1 12 LEU 12 12 12 LEU LEU D . n D 1 13 ASN 13 13 13 ASN ASN D . n D 1 14 GLU 14 14 14 GLU GLU D . n D 1 15 LEU 15 15 15 LEU LEU D . n D 1 16 LEU 16 16 16 LEU LEU D . n D 1 17 ASP 17 17 17 ASP ASP D . n D 1 18 ALA 18 18 18 ALA ALA D . n D 1 19 ILE 19 19 19 ILE ILE D . n D 1 20 ARG 20 20 20 ARG ARG D . n D 1 21 GLN 21 21 21 GLN GLN D . n D 1 22 GLU 22 22 22 GLU GLU D . n D 1 23 PHE 23 23 23 PHE PHE D . n D 1 24 LEU 24 24 24 LEU LEU D . n D 1 25 GLN 25 25 25 GLN GLN D . n D 1 26 VAL 26 26 26 VAL VAL D . n D 1 27 SER 27 27 27 SER SER D . n D 1 28 GLN 28 28 28 GLN GLN D . n D 1 29 GLU 29 29 29 GLU GLU D . n D 1 30 ALA 30 30 30 ALA ALA D . n D 1 31 ASN 31 31 31 ASN ASN D . n D 1 32 THR 32 32 32 THR THR D . n D 1 33 TYR 33 33 33 TYR TYR D . n D 1 34 ARG 34 34 34 ARG ARG D . n D 1 35 LEU 35 35 35 LEU LEU D . n D 1 36 GLN 36 36 36 GLN GLN D . n D 1 37 ASN 37 37 37 ASN ASN D . n D 1 38 GLN 38 38 38 GLN GLN D . n D 1 39 LYS 39 39 39 LYS LYS D . n D 1 40 ASP 40 40 40 ASP ASP D . n D 1 41 TYR 41 41 41 TYR TYR D . n D 1 42 ASP 42 42 42 ASP ASP D . n D 1 43 PHE 43 43 43 PHE PHE D . n D 1 44 LYS 44 44 44 LYS LYS D . n D 1 45 MET 45 45 45 MET MET D . n D 1 46 ASN 46 46 46 ASN ASN D . n D 1 47 GLN 47 47 47 GLN GLN D . n D 1 48 GLN 48 48 48 GLN GLN D . n D 1 49 LEU 49 49 49 LEU LEU D . n D 1 50 ALA 50 50 50 ALA ALA D . n D 1 51 GLU 51 51 51 GLU GLU D . n D 1 52 MET 52 52 52 MET MET D . n D 1 53 GLN 53 53 53 GLN GLN D . n D 1 54 GLN 54 54 54 GLN GLN D . n D 1 55 ILE 55 55 55 ILE ILE D . n D 1 56 ARG 56 56 56 ARG ARG D . n D 1 57 ASN 57 57 57 ASN ASN D . n D 1 58 THR 58 58 58 THR THR D . n D 1 59 VAL 59 59 59 VAL VAL D . n D 1 60 TYR 60 60 60 TYR TYR D . n D 1 61 GLU 61 61 61 GLU GLU D . n D 1 62 LEU 62 62 62 LEU LEU D . n D 1 63 GLU 63 63 63 GLU GLU D . n D 1 64 LEU 64 64 64 LEU LEU D . n D 1 65 THR 65 65 65 THR THR D . n D 1 66 HIS 66 66 66 HIS HIS D . n D 1 67 ARG 67 67 67 ARG ARG D . n D 1 68 LYS 68 68 68 LYS LYS D . n D 1 69 MET 69 69 69 MET MET D . n D 1 70 LYS 70 70 70 LYS LYS D . n D 1 71 ASP 71 71 71 ASP ASP D . n D 1 72 ALA 72 72 72 ALA ALA D . n D 1 73 TYR 73 73 73 TYR TYR D . n D 1 74 GLU 74 74 74 GLU GLU D . n D 1 75 GLU 75 75 75 GLU GLU D . n D 1 76 GLU 76 76 76 GLU GLU D . n D 1 77 ILE 77 77 77 ILE ILE D . n D 1 78 LYS 78 78 78 LYS LYS D . n D 1 79 HIS 79 79 79 HIS HIS D . n D 1 80 LEU 80 80 ? ? ? D . n D 1 81 LYS 81 81 ? ? ? D . n D 1 82 LEU 82 82 ? ? ? D . n D 1 83 GLY 83 83 ? ? ? D . n D 1 84 LEU 84 84 ? ? ? D . n D 1 85 GLU 85 85 ? ? ? D . n D 1 86 GLN 86 86 ? ? ? D . n D 1 87 ARG 87 87 ? ? ? D . n D 1 88 ASP 88 88 ? ? ? D . n D 1 89 HIS 89 89 ? ? ? D . n D 1 90 GLN 90 90 ? ? ? D . n D 1 91 ILE 91 91 ? ? ? D . n D 1 92 ALA 92 92 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 101 10 HOH HOH A . E 2 HOH 2 102 20 HOH HOH A . E 2 HOH 3 103 26 HOH HOH A . E 2 HOH 4 104 33 HOH HOH A . E 2 HOH 5 105 47 HOH HOH A . E 2 HOH 6 106 48 HOH HOH A . E 2 HOH 7 107 60 HOH HOH A . E 2 HOH 8 108 61 HOH HOH A . E 2 HOH 9 109 64 HOH HOH A . E 2 HOH 10 110 70 HOH HOH A . E 2 HOH 11 111 80 HOH HOH A . E 2 HOH 12 112 87 HOH HOH A . E 2 HOH 13 113 91 HOH HOH A . E 2 HOH 14 114 99 HOH HOH A . E 2 HOH 15 115 121 HOH HOH A . E 2 HOH 16 116 123 HOH HOH A . E 2 HOH 17 117 124 HOH HOH A . E 2 HOH 18 118 126 HOH HOH A . E 2 HOH 19 119 139 HOH HOH A . E 2 HOH 20 120 141 HOH HOH A . E 2 HOH 21 121 146 HOH HOH A . E 2 HOH 22 122 152 HOH HOH A . E 2 HOH 23 123 160 HOH HOH A . E 2 HOH 24 124 162 HOH HOH A . E 2 HOH 25 125 165 HOH HOH A . E 2 HOH 26 126 166 HOH HOH A . E 2 HOH 27 127 168 HOH HOH A . E 2 HOH 28 128 170 HOH HOH A . E 2 HOH 29 129 174 HOH HOH A . E 2 HOH 30 130 177 HOH HOH A . E 2 HOH 31 131 179 HOH HOH A . E 2 HOH 32 132 181 HOH HOH A . E 2 HOH 33 133 182 HOH HOH A . E 2 HOH 34 134 186 HOH HOH A . E 2 HOH 35 135 193 HOH HOH A . E 2 HOH 36 136 194 HOH HOH A . E 2 HOH 37 137 195 HOH HOH A . E 2 HOH 38 138 199 HOH HOH A . E 2 HOH 39 139 203 HOH HOH A . E 2 HOH 40 140 208 HOH HOH A . E 2 HOH 41 141 209 HOH HOH A . E 2 HOH 42 142 211 HOH HOH A . F 2 HOH 1 101 4 HOH HOH B . F 2 HOH 2 102 6 HOH HOH B . F 2 HOH 3 103 9 HOH HOH B . F 2 HOH 4 104 15 HOH HOH B . F 2 HOH 5 105 16 HOH HOH B . F 2 HOH 6 106 18 HOH HOH B . F 2 HOH 7 107 19 HOH HOH B . F 2 HOH 8 108 25 HOH HOH B . F 2 HOH 9 109 27 HOH HOH B . F 2 HOH 10 110 32 HOH HOH B . F 2 HOH 11 111 37 HOH HOH B . F 2 HOH 12 112 41 HOH HOH B . F 2 HOH 13 113 43 HOH HOH B . F 2 HOH 14 114 44 HOH HOH B . F 2 HOH 15 115 52 HOH HOH B . F 2 HOH 16 116 55 HOH HOH B . F 2 HOH 17 117 59 HOH HOH B . F 2 HOH 18 118 66 HOH HOH B . F 2 HOH 19 119 76 HOH HOH B . F 2 HOH 20 120 77 HOH HOH B . F 2 HOH 21 121 79 HOH HOH B . F 2 HOH 22 122 85 HOH HOH B . F 2 HOH 23 123 86 HOH HOH B . F 2 HOH 24 124 90 HOH HOH B . F 2 HOH 25 125 93 HOH HOH B . F 2 HOH 26 126 96 HOH HOH B . F 2 HOH 27 127 103 HOH HOH B . F 2 HOH 28 128 106 HOH HOH B . F 2 HOH 29 129 108 HOH HOH B . F 2 HOH 30 130 111 HOH HOH B . F 2 HOH 31 131 112 HOH HOH B . F 2 HOH 32 132 128 HOH HOH B . F 2 HOH 33 133 132 HOH HOH B . F 2 HOH 34 134 133 HOH HOH B . F 2 HOH 35 135 134 HOH HOH B . F 2 HOH 36 136 140 HOH HOH B . F 2 HOH 37 137 148 HOH HOH B . F 2 HOH 38 138 149 HOH HOH B . F 2 HOH 39 139 157 HOH HOH B . F 2 HOH 40 140 159 HOH HOH B . F 2 HOH 41 141 164 HOH HOH B . F 2 HOH 42 142 167 HOH HOH B . F 2 HOH 43 143 169 HOH HOH B . F 2 HOH 44 144 172 HOH HOH B . F 2 HOH 45 145 176 HOH HOH B . F 2 HOH 46 146 196 HOH HOH B . F 2 HOH 47 147 210 HOH HOH B . F 2 HOH 48 148 173 HOH HOH B . F 2 HOH 49 149 189 HOH HOH B . F 2 HOH 50 150 191 HOH HOH B . F 2 HOH 51 151 200 HOH HOH B . G 2 HOH 1 101 7 HOH HOH C . G 2 HOH 2 102 11 HOH HOH C . G 2 HOH 3 103 14 HOH HOH C . G 2 HOH 4 104 21 HOH HOH C . G 2 HOH 5 105 28 HOH HOH C . G 2 HOH 6 106 30 HOH HOH C . G 2 HOH 7 107 34 HOH HOH C . G 2 HOH 8 108 38 HOH HOH C . G 2 HOH 9 109 40 HOH HOH C . G 2 HOH 10 110 42 HOH HOH C . G 2 HOH 11 111 45 HOH HOH C . G 2 HOH 12 112 46 HOH HOH C . G 2 HOH 13 113 49 HOH HOH C . G 2 HOH 14 114 54 HOH HOH C . G 2 HOH 15 115 56 HOH HOH C . G 2 HOH 16 116 58 HOH HOH C . G 2 HOH 17 117 62 HOH HOH C . G 2 HOH 18 118 63 HOH HOH C . G 2 HOH 19 119 65 HOH HOH C . G 2 HOH 20 120 68 HOH HOH C . G 2 HOH 21 121 69 HOH HOH C . G 2 HOH 22 122 71 HOH HOH C . G 2 HOH 23 123 72 HOH HOH C . G 2 HOH 24 124 73 HOH HOH C . G 2 HOH 25 125 74 HOH HOH C . G 2 HOH 26 126 78 HOH HOH C . G 2 HOH 27 127 81 HOH HOH C . G 2 HOH 28 128 83 HOH HOH C . G 2 HOH 29 129 84 HOH HOH C . G 2 HOH 30 130 88 HOH HOH C . G 2 HOH 31 131 109 HOH HOH C . G 2 HOH 32 132 117 HOH HOH C . G 2 HOH 33 133 119 HOH HOH C . G 2 HOH 34 134 127 HOH HOH C . G 2 HOH 35 135 129 HOH HOH C . G 2 HOH 36 136 130 HOH HOH C . G 2 HOH 37 137 131 HOH HOH C . G 2 HOH 38 138 136 HOH HOH C . G 2 HOH 39 139 138 HOH HOH C . G 2 HOH 40 140 144 HOH HOH C . G 2 HOH 41 141 145 HOH HOH C . G 2 HOH 42 142 147 HOH HOH C . G 2 HOH 43 143 151 HOH HOH C . G 2 HOH 44 144 154 HOH HOH C . G 2 HOH 45 145 155 HOH HOH C . G 2 HOH 46 146 158 HOH HOH C . G 2 HOH 47 147 161 HOH HOH C . G 2 HOH 48 148 163 HOH HOH C . G 2 HOH 49 149 171 HOH HOH C . G 2 HOH 50 150 175 HOH HOH C . G 2 HOH 51 151 178 HOH HOH C . G 2 HOH 52 152 185 HOH HOH C . G 2 HOH 53 153 187 HOH HOH C . G 2 HOH 54 154 190 HOH HOH C . G 2 HOH 55 155 202 HOH HOH C . G 2 HOH 56 156 206 HOH HOH C . H 2 HOH 1 101 1 HOH HOH D . H 2 HOH 2 102 2 HOH HOH D . H 2 HOH 3 103 3 HOH HOH D . H 2 HOH 4 104 5 HOH HOH D . H 2 HOH 5 105 8 HOH HOH D . H 2 HOH 6 106 12 HOH HOH D . H 2 HOH 7 107 13 HOH HOH D . H 2 HOH 8 108 17 HOH HOH D . H 2 HOH 9 109 22 HOH HOH D . H 2 HOH 10 110 23 HOH HOH D . H 2 HOH 11 111 24 HOH HOH D . H 2 HOH 12 112 29 HOH HOH D . H 2 HOH 13 113 31 HOH HOH D . H 2 HOH 14 114 35 HOH HOH D . H 2 HOH 15 115 36 HOH HOH D . H 2 HOH 16 116 39 HOH HOH D . H 2 HOH 17 117 50 HOH HOH D . H 2 HOH 18 118 51 HOH HOH D . H 2 HOH 19 119 53 HOH HOH D . H 2 HOH 20 120 57 HOH HOH D . H 2 HOH 21 121 67 HOH HOH D . H 2 HOH 22 122 75 HOH HOH D . H 2 HOH 23 123 82 HOH HOH D . H 2 HOH 24 124 89 HOH HOH D . H 2 HOH 25 125 92 HOH HOH D . H 2 HOH 26 126 94 HOH HOH D . H 2 HOH 27 127 95 HOH HOH D . H 2 HOH 28 128 97 HOH HOH D . H 2 HOH 29 129 98 HOH HOH D . H 2 HOH 30 130 100 HOH HOH D . H 2 HOH 31 131 101 HOH HOH D . H 2 HOH 32 132 102 HOH HOH D . H 2 HOH 33 133 104 HOH HOH D . H 2 HOH 34 134 105 HOH HOH D . H 2 HOH 35 135 107 HOH HOH D . H 2 HOH 36 136 110 HOH HOH D . H 2 HOH 37 137 113 HOH HOH D . H 2 HOH 38 138 114 HOH HOH D . H 2 HOH 39 139 115 HOH HOH D . H 2 HOH 40 140 116 HOH HOH D . H 2 HOH 41 141 118 HOH HOH D . H 2 HOH 42 142 120 HOH HOH D . H 2 HOH 43 143 122 HOH HOH D . H 2 HOH 44 144 125 HOH HOH D . H 2 HOH 45 145 135 HOH HOH D . H 2 HOH 46 146 137 HOH HOH D . H 2 HOH 47 147 142 HOH HOH D . H 2 HOH 48 148 143 HOH HOH D . H 2 HOH 49 149 150 HOH HOH D . H 2 HOH 50 150 153 HOH HOH D . H 2 HOH 51 151 156 HOH HOH D . H 2 HOH 52 152 180 HOH HOH D . H 2 HOH 53 153 183 HOH HOH D . H 2 HOH 54 154 184 HOH HOH D . H 2 HOH 55 155 188 HOH HOH D . H 2 HOH 56 156 192 HOH HOH D . H 2 HOH 57 157 197 HOH HOH D . H 2 HOH 58 158 198 HOH HOH D . H 2 HOH 59 159 201 HOH HOH D . H 2 HOH 60 160 204 HOH HOH D . H 2 HOH 61 161 205 HOH HOH D . H 2 HOH 62 162 207 HOH HOH D . H 2 HOH 63 163 212 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXS phasing . ? 1 PHENIX refinement '(phenix.refine: 1.7_650)' ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _cell.entry_id 3VP8 _cell.length_a 57.170 _cell.length_b 43.582 _cell.length_c 70.525 _cell.angle_alpha 90.00 _cell.angle_beta 96.19 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VP8 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3VP8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pdbx_details '10%(v/v) 2-propanol, 0.1M phosphate-citrate, 0.2M Li2SO4, pH 4.2, VAPOR DIFFUSION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-06-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3VP8 _reflns.observed_criterion_sigma_I 4.8 _reflns.observed_criterion_sigma_F 4.8 _reflns.d_resolution_low 34.6 _reflns.d_resolution_high 1.9 _reflns.number_obs 25047 _reflns.number_all 25047 _reflns.percent_possible_obs 92.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 92.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VP8 _refine.ls_number_reflns_obs 24979 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.585 _refine.ls_d_res_high 1.910 _refine.ls_percent_reflns_obs 92.15 _refine.ls_R_factor_obs 0.2471 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2442 _refine.ls_R_factor_R_free 0.2984 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.03 _refine.ls_number_reflns_R_free 1257 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.6573 _refine.aniso_B[1][1] -9.9528 _refine.aniso_B[2][2] 3.8087 _refine.aniso_B[3][3] 6.1441 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 6.2637 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.408 _refine.solvent_model_param_bsol 45.361 _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.49 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.22 _refine.overall_FOM_work_R_set 0.7258 _refine.B_iso_max 70.330 _refine.B_iso_min 10.680 _refine.pdbx_overall_phase_error 33.1100 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2623 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 2835 _refine_hist.d_res_high 1.910 _refine_hist.d_res_low 34.585 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 2651 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3554 0.852 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 386 0.056 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 474 0.003 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1051 20.269 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 1.9096 1.9860 9 89.0000 2508 . 0.3505 0.4200 . 137 . 2645 . 'X-RAY DIFFRACTION' . 1.9860 2.0764 9 98.0000 2797 . 0.2368 0.3363 . 140 . 2937 . 'X-RAY DIFFRACTION' . 2.0764 2.1859 9 99.0000 2813 . 0.2139 0.2921 . 163 . 2976 . 'X-RAY DIFFRACTION' . 2.1859 2.3228 9 63.0000 1763 . 0.2860 0.3401 . 93 . 1856 . 'X-RAY DIFFRACTION' . 2.3228 2.5021 9 99.0000 2822 . 0.2413 0.3098 . 166 . 2988 . 'X-RAY DIFFRACTION' . 2.5021 2.7538 9 99.0000 2849 . 0.2326 0.2694 . 138 . 2987 . 'X-RAY DIFFRACTION' . 2.7538 3.1521 9 100.0000 2865 . 0.2261 0.2832 . 132 . 2997 . 'X-RAY DIFFRACTION' . 3.1521 3.9703 9 84.0000 2443 . 0.2116 0.2319 . 107 . 2550 . 'X-RAY DIFFRACTION' . 3.9703 34.5904 9 98.0000 2862 . 0.2685 0.3190 . 181 . 3043 . 'X-RAY DIFFRACTION' . # _database_PDB_matrix.entry_id 3VP8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3VP8 _struct.title 'Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VP8 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Four helix bundle, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TUP1_YEAST _struct_ref.pdbx_db_accession P16649 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTASVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYELELTHRKMKDAYEEEIKHL KLGLEQRDHQIA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VP8 A 1 ? 92 ? P16649 1 ? 92 ? 1 92 2 1 3VP8 B 1 ? 92 ? P16649 1 ? 92 ? 1 92 3 1 3VP8 C 1 ? 92 ? P16649 1 ? 92 ? 1 92 4 1 3VP8 D 1 ? 92 ? P16649 1 ? 92 ? 1 92 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12690 ? 1 MORE -101 ? 1 'SSA (A^2)' 18810 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? ILE A 77 ? SER A 4 ILE A 77 1 ? 74 HELX_P HELX_P2 2 ALA B 3 ? GLU B 29 ? ALA B 3 GLU B 29 1 ? 27 HELX_P HELX_P3 3 GLU B 29 ? LYS B 81 ? GLU B 29 LYS B 81 1 ? 53 HELX_P HELX_P4 4 VAL C 5 ? LEU C 80 ? VAL C 5 LEU C 80 1 ? 76 HELX_P HELX_P5 5 ALA D 3 ? LYS D 78 ? ALA D 3 LYS D 78 1 ? 76 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O D HOH 108 ? ? O D HOH 133 ? ? 1.91 2 1 O A HOH 129 ? ? O C HOH 148 ? ? 2.01 3 1 O B HOH 144 ? ? O C HOH 149 ? ? 2.09 4 1 O A HOH 131 ? ? O A HOH 134 ? ? 2.10 5 1 O C HOH 134 ? ? O D HOH 128 ? ? 2.10 6 1 O C HOH 136 ? ? O C HOH 141 ? ? 2.11 7 1 O B HOH 143 ? ? O B HOH 145 ? ? 2.13 8 1 O A HOH 121 ? ? O B HOH 139 ? ? 2.14 9 1 NE2 C GLN 36 ? ? O C HOH 147 ? ? 2.16 10 1 O D HOH 138 ? ? O D HOH 139 ? ? 2.16 11 1 OE1 B GLU 29 ? ? O B HOH 125 ? ? 2.17 12 1 OE2 D GLU 63 ? ? O D HOH 140 ? ? 2.19 13 1 O D HOH 115 ? ? O D HOH 129 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 148 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 C _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 155 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_446 _pdbx_validate_symm_contact.dist 1.90 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id D _pdbx_validate_torsion.auth_seq_id 78 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -61.84 _pdbx_validate_torsion.psi 71.20 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ALA 3 ? A ALA 3 4 1 Y 1 A HIS 79 ? A HIS 79 5 1 Y 1 A LEU 80 ? A LEU 80 6 1 Y 1 A LYS 81 ? A LYS 81 7 1 Y 1 A LEU 82 ? A LEU 82 8 1 Y 1 A GLY 83 ? A GLY 83 9 1 Y 1 A LEU 84 ? A LEU 84 10 1 Y 1 A GLU 85 ? A GLU 85 11 1 Y 1 A GLN 86 ? A GLN 86 12 1 Y 1 A ARG 87 ? A ARG 87 13 1 Y 1 A ASP 88 ? A ASP 88 14 1 Y 1 A HIS 89 ? A HIS 89 15 1 Y 1 A GLN 90 ? A GLN 90 16 1 Y 1 A ILE 91 ? A ILE 91 17 1 Y 1 A ALA 92 ? A ALA 92 18 1 Y 1 B MET 1 ? B MET 1 19 1 Y 1 B LEU 82 ? B LEU 82 20 1 Y 1 B GLY 83 ? B GLY 83 21 1 Y 1 B LEU 84 ? B LEU 84 22 1 Y 1 B GLU 85 ? B GLU 85 23 1 Y 1 B GLN 86 ? B GLN 86 24 1 Y 1 B ARG 87 ? B ARG 87 25 1 Y 1 B ASP 88 ? B ASP 88 26 1 Y 1 B HIS 89 ? B HIS 89 27 1 Y 1 B GLN 90 ? B GLN 90 28 1 Y 1 B ILE 91 ? B ILE 91 29 1 Y 1 B ALA 92 ? B ALA 92 30 1 Y 1 C MET 1 ? C MET 1 31 1 Y 1 C THR 2 ? C THR 2 32 1 Y 1 C ALA 3 ? C ALA 3 33 1 Y 1 C LYS 81 ? C LYS 81 34 1 Y 1 C LEU 82 ? C LEU 82 35 1 Y 1 C GLY 83 ? C GLY 83 36 1 Y 1 C LEU 84 ? C LEU 84 37 1 Y 1 C GLU 85 ? C GLU 85 38 1 Y 1 C GLN 86 ? C GLN 86 39 1 Y 1 C ARG 87 ? C ARG 87 40 1 Y 1 C ASP 88 ? C ASP 88 41 1 Y 1 C HIS 89 ? C HIS 89 42 1 Y 1 C GLN 90 ? C GLN 90 43 1 Y 1 C ILE 91 ? C ILE 91 44 1 Y 1 C ALA 92 ? C ALA 92 45 1 Y 1 D MET 1 ? D MET 1 46 1 Y 1 D LEU 80 ? D LEU 80 47 1 Y 1 D LYS 81 ? D LYS 81 48 1 Y 1 D LEU 82 ? D LEU 82 49 1 Y 1 D GLY 83 ? D GLY 83 50 1 Y 1 D LEU 84 ? D LEU 84 51 1 Y 1 D GLU 85 ? D GLU 85 52 1 Y 1 D GLN 86 ? D GLN 86 53 1 Y 1 D ARG 87 ? D ARG 87 54 1 Y 1 D ASP 88 ? D ASP 88 55 1 Y 1 D HIS 89 ? D HIS 89 56 1 Y 1 D GLN 90 ? D GLN 90 57 1 Y 1 D ILE 91 ? D ILE 91 58 1 Y 1 D ALA 92 ? D ALA 92 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 SER N N N N 259 SER CA C N S 260 SER C C N N 261 SER O O N N 262 SER CB C N N 263 SER OG O N N 264 SER OXT O N N 265 SER H H N N 266 SER H2 H N N 267 SER HA H N N 268 SER HB2 H N N 269 SER HB3 H N N 270 SER HG H N N 271 SER HXT H N N 272 THR N N N N 273 THR CA C N S 274 THR C C N N 275 THR O O N N 276 THR CB C N R 277 THR OG1 O N N 278 THR CG2 C N N 279 THR OXT O N N 280 THR H H N N 281 THR H2 H N N 282 THR HA H N N 283 THR HB H N N 284 THR HG1 H N N 285 THR HG21 H N N 286 THR HG22 H N N 287 THR HG23 H N N 288 THR HXT H N N 289 TYR N N N N 290 TYR CA C N S 291 TYR C C N N 292 TYR O O N N 293 TYR CB C N N 294 TYR CG C Y N 295 TYR CD1 C Y N 296 TYR CD2 C Y N 297 TYR CE1 C Y N 298 TYR CE2 C Y N 299 TYR CZ C Y N 300 TYR OH O N N 301 TYR OXT O N N 302 TYR H H N N 303 TYR H2 H N N 304 TYR HA H N N 305 TYR HB2 H N N 306 TYR HB3 H N N 307 TYR HD1 H N N 308 TYR HD2 H N N 309 TYR HE1 H N N 310 TYR HE2 H N N 311 TYR HH H N N 312 TYR HXT H N N 313 VAL N N N N 314 VAL CA C N S 315 VAL C C N N 316 VAL O O N N 317 VAL CB C N N 318 VAL CG1 C N N 319 VAL CG2 C N N 320 VAL OXT O N N 321 VAL H H N N 322 VAL H2 H N N 323 VAL HA H N N 324 VAL HB H N N 325 VAL HG11 H N N 326 VAL HG12 H N N 327 VAL HG13 H N N 328 VAL HG21 H N N 329 VAL HG22 H N N 330 VAL HG23 H N N 331 VAL HXT H N N 332 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 SER N CA sing N N 247 SER N H sing N N 248 SER N H2 sing N N 249 SER CA C sing N N 250 SER CA CB sing N N 251 SER CA HA sing N N 252 SER C O doub N N 253 SER C OXT sing N N 254 SER CB OG sing N N 255 SER CB HB2 sing N N 256 SER CB HB3 sing N N 257 SER OG HG sing N N 258 SER OXT HXT sing N N 259 THR N CA sing N N 260 THR N H sing N N 261 THR N H2 sing N N 262 THR CA C sing N N 263 THR CA CB sing N N 264 THR CA HA sing N N 265 THR C O doub N N 266 THR C OXT sing N N 267 THR CB OG1 sing N N 268 THR CB CG2 sing N N 269 THR CB HB sing N N 270 THR OG1 HG1 sing N N 271 THR CG2 HG21 sing N N 272 THR CG2 HG22 sing N N 273 THR CG2 HG23 sing N N 274 THR OXT HXT sing N N 275 TYR N CA sing N N 276 TYR N H sing N N 277 TYR N H2 sing N N 278 TYR CA C sing N N 279 TYR CA CB sing N N 280 TYR CA HA sing N N 281 TYR C O doub N N 282 TYR C OXT sing N N 283 TYR CB CG sing N N 284 TYR CB HB2 sing N N 285 TYR CB HB3 sing N N 286 TYR CG CD1 doub Y N 287 TYR CG CD2 sing Y N 288 TYR CD1 CE1 sing Y N 289 TYR CD1 HD1 sing N N 290 TYR CD2 CE2 doub Y N 291 TYR CD2 HD2 sing N N 292 TYR CE1 CZ doub Y N 293 TYR CE1 HE1 sing N N 294 TYR CE2 CZ sing Y N 295 TYR CE2 HE2 sing N N 296 TYR CZ OH sing N N 297 TYR OH HH sing N N 298 TYR OXT HXT sing N N 299 VAL N CA sing N N 300 VAL N H sing N N 301 VAL N H2 sing N N 302 VAL CA C sing N N 303 VAL CA CB sing N N 304 VAL CA HA sing N N 305 VAL C O doub N N 306 VAL C OXT sing N N 307 VAL CB CG1 sing N N 308 VAL CB CG2 sing N N 309 VAL CB HB sing N N 310 VAL CG1 HG11 sing N N 311 VAL CG1 HG12 sing N N 312 VAL CG1 HG13 sing N N 313 VAL CG2 HG21 sing N N 314 VAL CG2 HG22 sing N N 315 VAL CG2 HG23 sing N N 316 VAL OXT HXT sing N N 317 # _atom_sites.entry_id 3VP8 _atom_sites.fract_transf_matrix[1][1] 0.017492 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001898 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022945 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014263 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_