data_3VPY # _entry.id 3VPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3VPY RCSB RCSB095354 WWPDB D_1000095354 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VPY _pdbx_database_status.recvd_initial_deposition_date 2012-03-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yuan, Y.A.' 1 'Machida, S.' 2 # _citation.id primary _citation.title ;Crystal Structure of Arabidopsis thaliana Dawdle Forkhead-Associated Domain reveals a conserved phospho-threonine recognition cleft for Dicer-like1 binding. ; _citation.journal_abbrev 'Mol Plant' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1752-9867 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23313986 _citation.pdbx_database_id_DOI 10.1093/mp/sst007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Machida, S.' 1 primary 'Yuan, A.Y.' 2 # _cell.entry_id 3VPY _cell.length_a 48.564 _cell.length_b 48.709 _cell.length_c 54.688 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VPY _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'FHA domain-containing protein DDL' 17530.127 1 ? ? 'DDL FHA domain, UNP RESIDUES 181-310' ? 2 water nat water 18.015 140 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein DAWDLE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQHAVIQYRE(MSE)EKEKPD G(MSE)(MSE)GKQVKPYI(MSE)DLGSTNKTYINESPIEPQRYYELFEKDTIKFGNSSREYVLLHENSAELEHHHHHHH H ; _entity_poly.pdbx_seq_one_letter_code_can ;TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQHAVIQYREMEKEKPDGMMG KQVKPYIMDLGSTNKTYINESPIEPQRYYELFEKDTIKFGNSSREYVLLHENSAELEHHHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 LEU n 1 4 PHE n 1 5 ASN n 1 6 GLU n 1 7 PRO n 1 8 PRO n 1 9 GLU n 1 10 ALA n 1 11 ARG n 1 12 LYS n 1 13 PRO n 1 14 SER n 1 15 GLU n 1 16 ARG n 1 17 TRP n 1 18 ARG n 1 19 LEU n 1 20 TYR n 1 21 VAL n 1 22 PHE n 1 23 LYS n 1 24 ASP n 1 25 GLY n 1 26 GLU n 1 27 PRO n 1 28 LEU n 1 29 ASN n 1 30 GLU n 1 31 PRO n 1 32 LEU n 1 33 CYS n 1 34 LEU n 1 35 HIS n 1 36 ARG n 1 37 GLN n 1 38 SER n 1 39 CYS n 1 40 TYR n 1 41 LEU n 1 42 PHE n 1 43 GLY n 1 44 ARG n 1 45 GLU n 1 46 ARG n 1 47 ARG n 1 48 ILE n 1 49 ALA n 1 50 ASP n 1 51 ILE n 1 52 PRO n 1 53 THR n 1 54 ASP n 1 55 HIS n 1 56 PRO n 1 57 SER n 1 58 CYS n 1 59 SER n 1 60 LYS n 1 61 GLN n 1 62 HIS n 1 63 ALA n 1 64 VAL n 1 65 ILE n 1 66 GLN n 1 67 TYR n 1 68 ARG n 1 69 GLU n 1 70 MSE n 1 71 GLU n 1 72 LYS n 1 73 GLU n 1 74 LYS n 1 75 PRO n 1 76 ASP n 1 77 GLY n 1 78 MSE n 1 79 MSE n 1 80 GLY n 1 81 LYS n 1 82 GLN n 1 83 VAL n 1 84 LYS n 1 85 PRO n 1 86 TYR n 1 87 ILE n 1 88 MSE n 1 89 ASP n 1 90 LEU n 1 91 GLY n 1 92 SER n 1 93 THR n 1 94 ASN n 1 95 LYS n 1 96 THR n 1 97 TYR n 1 98 ILE n 1 99 ASN n 1 100 GLU n 1 101 SER n 1 102 PRO n 1 103 ILE n 1 104 GLU n 1 105 PRO n 1 106 GLN n 1 107 ARG n 1 108 TYR n 1 109 TYR n 1 110 GLU n 1 111 LEU n 1 112 PHE n 1 113 GLU n 1 114 LYS n 1 115 ASP n 1 116 THR n 1 117 ILE n 1 118 LYS n 1 119 PHE n 1 120 GLY n 1 121 ASN n 1 122 SER n 1 123 SER n 1 124 ARG n 1 125 GLU n 1 126 TYR n 1 127 VAL n 1 128 LEU n 1 129 LEU n 1 130 HIS n 1 131 GLU n 1 132 ASN n 1 133 SER n 1 134 ALA n 1 135 GLU n 1 136 LEU n 1 137 GLU n 1 138 HIS n 1 139 HIS n 1 140 HIS n 1 141 HIS n 1 142 HIS n 1 143 HIS n 1 144 HIS n 1 145 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DDL, At3g20550, K10D20.9' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DDL_ARATH _struct_ref.pdbx_db_accession Q8W4D8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQHAVIQYREMEKEKPDGMMG KQVKPYIMDLGSTNKTYINESPIEPQRYYELFEKDTIKFGNSSREYVLLHE ; _struct_ref.pdbx_align_begin 180 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VPY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 131 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8W4D8 _struct_ref_seq.db_align_beg 180 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 310 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 131 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3VPY ASN A 132 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 132 1 1 3VPY SER A 133 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 133 2 1 3VPY ALA A 134 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 134 3 1 3VPY GLU A 135 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 135 4 1 3VPY LEU A 136 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 136 5 1 3VPY GLU A 137 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 137 6 1 3VPY HIS A 138 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 138 7 1 3VPY HIS A 139 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 139 8 1 3VPY HIS A 140 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 140 9 1 3VPY HIS A 141 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 141 10 1 3VPY HIS A 142 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 142 11 1 3VPY HIS A 143 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 143 12 1 3VPY HIS A 144 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 144 13 1 3VPY HIS A 145 ? UNP Q8W4D8 ? ? 'EXPRESSION TAG' 145 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3VPY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_percent_sol 36.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'PEG, HEPES, AS, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-03-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 3VPY _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 36.37 _reflns.d_resolution_high 1.7 _reflns.number_obs 13269 _reflns.number_all 13290 _reflns.percent_possible_obs 99.84 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.73 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.521 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3VPY _refine.ls_number_reflns_obs 13269 _refine.ls_number_reflns_all 13290 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.37 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.84 _refine.ls_R_factor_obs 0.19204 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18769 _refine.ls_R_factor_R_free 0.23107 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1487 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 22.617 _refine.aniso_B[1][1] 0.32 _refine.aniso_B[2][2] -0.54 _refine.aniso_B[3][3] 0.21 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.133 _refine.pdbx_overall_ESU_R_Free 0.128 _refine.overall_SU_ML 0.072 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.100 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1162 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 1302 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 36.37 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.011 0.022 ? 1191 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.285 1.972 ? 1609 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.472 5.000 ? 144 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.727 23.559 ? 59 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.579 15.000 ? 206 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.691 15.000 ? 10 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.091 0.200 ? 165 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.020 ? 927 ? 'X-RAY DIFFRACTION' r_nbd_refined 0.205 0.200 ? 465 ? 'X-RAY DIFFRACTION' r_nbtor_refined 0.301 0.200 ? 806 ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined 0.109 0.200 ? 101 ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined 0.180 0.200 ? 49 ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined 0.155 0.200 ? 30 ? 'X-RAY DIFFRACTION' r_mcbond_it 0.850 1.500 ? 747 ? 'X-RAY DIFFRACTION' r_mcangle_it 1.369 2.000 ? 1169 ? 'X-RAY DIFFRACTION' r_scbond_it 2.562 3.000 ? 499 ? 'X-RAY DIFFRACTION' r_scangle_it 4.016 4.500 ? 440 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.701 _refine_ls_shell.d_res_low 1.745 _refine_ls_shell.number_reflns_R_work 937 _refine_ls_shell.R_factor_R_work 0.209 _refine_ls_shell.percent_reflns_obs 99.15 _refine_ls_shell.R_factor_R_free 0.283 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 118 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3VPY _struct.title 'Crystal structure of Arabidopsis DDL FHA domain' _struct.pdbx_descriptor 'FHA domain-containing protein DDL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VPY _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'FHA domain, DCL1 pT recognition, Arabidopsis DCL1, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 133 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id HIS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 145 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 133 _struct_conf.end_auth_comp_id HIS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 145 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 69 C ? ? ? 1_555 A MSE 70 N ? ? A GLU 69 A MSE 70 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A MSE 70 C ? ? ? 1_555 A GLU 71 N ? ? A MSE 70 A GLU 71 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A GLY 77 C ? ? ? 1_555 A MSE 78 N ? ? A GLY 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 78 C ? ? ? 1_555 A MSE 79 N ? ? A MSE 78 A MSE 79 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A MSE 79 C ? ? ? 1_555 A GLY 80 N ? ? A MSE 79 A GLY 80 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A ILE 87 C ? ? ? 1_555 A MSE 88 N ? ? A ILE 87 A MSE 88 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? A MSE 88 C ? ? ? 1_555 A ASP 89 N ? ? A MSE 88 A ASP 89 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 6 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 26 ? PRO A 27 ? GLU A 26 PRO A 27 A 2 ARG A 18 ? LYS A 23 ? ARG A 18 LYS A 23 A 3 LEU A 32 ? CYS A 33 ? LEU A 32 CYS A 33 B 1 GLU A 26 ? PRO A 27 ? GLU A 26 PRO A 27 B 2 ARG A 18 ? LYS A 23 ? ARG A 18 LYS A 23 B 3 ARG A 124 ? LEU A 129 ? ARG A 124 LEU A 129 B 4 THR A 116 ? PHE A 119 ? THR A 116 PHE A 119 B 5 THR A 96 ? ILE A 98 ? THR A 96 ILE A 98 B 6 SER A 101 ? PRO A 102 ? SER A 101 PRO A 102 C 1 ILE A 51 ? PRO A 52 ? ILE A 51 PRO A 52 C 2 CYS A 39 ? GLY A 43 ? CYS A 39 GLY A 43 C 3 ALA A 63 ? GLU A 73 ? ALA A 63 GLU A 73 C 4 MSE A 79 ? ASP A 89 ? MSE A 79 ASP A 89 C 5 TYR A 109 ? GLU A 110 ? TYR A 109 GLU A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 26 ? O GLU A 26 N LYS A 23 ? N LYS A 23 A 2 3 N LEU A 19 ? N LEU A 19 O LEU A 32 ? O LEU A 32 B 1 2 O GLU A 26 ? O GLU A 26 N LYS A 23 ? N LYS A 23 B 2 3 N ARG A 18 ? N ARG A 18 O LEU A 129 ? O LEU A 129 B 3 4 O TYR A 126 ? O TYR A 126 N ILE A 117 ? N ILE A 117 B 4 5 O LYS A 118 ? O LYS A 118 N TYR A 97 ? N TYR A 97 B 5 6 N ILE A 98 ? N ILE A 98 O SER A 101 ? O SER A 101 C 1 2 O ILE A 51 ? O ILE A 51 N LEU A 41 ? N LEU A 41 C 2 3 N PHE A 42 ? N PHE A 42 O ALA A 63 ? O ALA A 63 C 3 4 N GLN A 66 ? N GLN A 66 O TYR A 86 ? O TYR A 86 C 4 5 N ILE A 87 ? N ILE A 87 O TYR A 109 ? O TYR A 109 # _database_PDB_matrix.entry_id 3VPY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VPY _atom_sites.fract_transf_matrix[1][1] 0.020591 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020530 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018286 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR ALA A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 MSE 70 70 70 MSE MSE A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 MSE 78 78 78 MSE MSE A . n A 1 79 MSE 79 79 79 MSE MSE A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 MSE 88 88 88 MSE MSE A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 HIS 130 130 130 HIS HIS A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 ASN 132 132 132 ASN ALA A . n A 1 133 SER 133 133 133 SER ALA A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 GLU 135 135 135 GLU ALA A . n A 1 136 LEU 136 136 136 LEU ALA A . n A 1 137 GLU 137 137 137 GLU ALA A . n A 1 138 HIS 138 138 138 HIS ALA A . n A 1 139 HIS 139 139 139 HIS ALA A . n A 1 140 HIS 140 140 140 HIS ALA A . n A 1 141 HIS 141 141 141 HIS ALA A . n A 1 142 HIS 142 142 142 HIS ALA A . n A 1 143 HIS 143 143 143 HIS ALA A . n A 1 144 HIS 144 144 144 HIS ALA A . n A 1 145 HIS 145 145 145 HIS ALA A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 70 A MSE 70 ? MET SELENOMETHIONINE 2 A MSE 78 A MSE 78 ? MET SELENOMETHIONINE 3 A MSE 79 A MSE 79 ? MET SELENOMETHIONINE 4 A MSE 88 A MSE 88 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-02-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 46.5174 _pdbx_refine_tls.origin_y 30.7025 _pdbx_refine_tls.origin_z 0.6246 _pdbx_refine_tls.T[1][1] -0.1133 _pdbx_refine_tls.T[2][2] -0.0987 _pdbx_refine_tls.T[3][3] -0.0991 _pdbx_refine_tls.T[1][2] 0.0003 _pdbx_refine_tls.T[1][3] 0.0075 _pdbx_refine_tls.T[2][3] 0.0100 _pdbx_refine_tls.L[1][1] 0.8928 _pdbx_refine_tls.L[2][2] 1.5935 _pdbx_refine_tls.L[3][3] 1.2847 _pdbx_refine_tls.L[1][2] 0.0838 _pdbx_refine_tls.L[1][3] 0.1633 _pdbx_refine_tls.L[2][3] -0.6027 _pdbx_refine_tls.S[1][1] 0.0303 _pdbx_refine_tls.S[1][2] 0.1233 _pdbx_refine_tls.S[1][3] 0.0002 _pdbx_refine_tls.S[2][1] -0.1012 _pdbx_refine_tls.S[2][2] 0.0073 _pdbx_refine_tls.S[2][3] 0.0266 _pdbx_refine_tls.S[3][1] 0.0306 _pdbx_refine_tls.S[3][2] 0.0598 _pdbx_refine_tls.S[3][3] -0.0376 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 141 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SHARP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 35 ? ? -141.86 14.21 2 1 LEU A 90 ? ? -98.42 33.75 3 1 LYS A 95 ? ? 80.67 166.52 4 1 LYS A 114 ? ? 82.97 -2.11 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 1 ? OG1 ? A THR 1 OG1 2 1 Y 1 A THR 1 ? CG2 ? A THR 1 CG2 3 1 Y 1 A ASN 132 ? CG ? A ASN 132 CG 4 1 Y 1 A ASN 132 ? OD1 ? A ASN 132 OD1 5 1 Y 1 A ASN 132 ? ND2 ? A ASN 132 ND2 6 1 Y 1 A SER 133 ? OG ? A SER 133 OG 7 1 Y 1 A GLU 135 ? CG ? A GLU 135 CG 8 1 Y 1 A GLU 135 ? CD ? A GLU 135 CD 9 1 Y 1 A GLU 135 ? OE1 ? A GLU 135 OE1 10 1 Y 1 A GLU 135 ? OE2 ? A GLU 135 OE2 11 1 Y 1 A LEU 136 ? CG ? A LEU 136 CG 12 1 Y 1 A LEU 136 ? CD1 ? A LEU 136 CD1 13 1 Y 1 A LEU 136 ? CD2 ? A LEU 136 CD2 14 1 Y 1 A GLU 137 ? CG ? A GLU 137 CG 15 1 Y 1 A GLU 137 ? CD ? A GLU 137 CD 16 1 Y 1 A GLU 137 ? OE1 ? A GLU 137 OE1 17 1 Y 1 A GLU 137 ? OE2 ? A GLU 137 OE2 18 1 Y 1 A HIS 138 ? CG ? A HIS 138 CG 19 1 Y 1 A HIS 138 ? ND1 ? A HIS 138 ND1 20 1 Y 1 A HIS 138 ? CD2 ? A HIS 138 CD2 21 1 Y 1 A HIS 138 ? CE1 ? A HIS 138 CE1 22 1 Y 1 A HIS 138 ? NE2 ? A HIS 138 NE2 23 1 Y 1 A HIS 139 ? CG ? A HIS 139 CG 24 1 Y 1 A HIS 139 ? ND1 ? A HIS 139 ND1 25 1 Y 1 A HIS 139 ? CD2 ? A HIS 139 CD2 26 1 Y 1 A HIS 139 ? CE1 ? A HIS 139 CE1 27 1 Y 1 A HIS 139 ? NE2 ? A HIS 139 NE2 28 1 Y 1 A HIS 140 ? CG ? A HIS 140 CG 29 1 Y 1 A HIS 140 ? ND1 ? A HIS 140 ND1 30 1 Y 1 A HIS 140 ? CD2 ? A HIS 140 CD2 31 1 Y 1 A HIS 140 ? CE1 ? A HIS 140 CE1 32 1 Y 1 A HIS 140 ? NE2 ? A HIS 140 NE2 33 1 Y 1 A HIS 141 ? CG ? A HIS 141 CG 34 1 Y 1 A HIS 141 ? ND1 ? A HIS 141 ND1 35 1 Y 1 A HIS 141 ? CD2 ? A HIS 141 CD2 36 1 Y 1 A HIS 141 ? CE1 ? A HIS 141 CE1 37 1 Y 1 A HIS 141 ? NE2 ? A HIS 141 NE2 38 1 Y 1 A HIS 142 ? CG ? A HIS 142 CG 39 1 Y 1 A HIS 142 ? ND1 ? A HIS 142 ND1 40 1 Y 1 A HIS 142 ? CD2 ? A HIS 142 CD2 41 1 Y 1 A HIS 142 ? CE1 ? A HIS 142 CE1 42 1 Y 1 A HIS 142 ? NE2 ? A HIS 142 NE2 43 1 Y 1 A HIS 143 ? CG ? A HIS 143 CG 44 1 Y 1 A HIS 143 ? ND1 ? A HIS 143 ND1 45 1 Y 1 A HIS 143 ? CD2 ? A HIS 143 CD2 46 1 Y 1 A HIS 143 ? CE1 ? A HIS 143 CE1 47 1 Y 1 A HIS 143 ? NE2 ? A HIS 143 NE2 48 1 Y 1 A HIS 144 ? CG ? A HIS 144 CG 49 1 Y 1 A HIS 144 ? ND1 ? A HIS 144 ND1 50 1 Y 1 A HIS 144 ? CD2 ? A HIS 144 CD2 51 1 Y 1 A HIS 144 ? CE1 ? A HIS 144 CE1 52 1 Y 1 A HIS 144 ? NE2 ? A HIS 144 NE2 53 1 Y 1 A HIS 145 ? CG ? A HIS 145 CG 54 1 Y 1 A HIS 145 ? ND1 ? A HIS 145 ND1 55 1 Y 1 A HIS 145 ? CD2 ? A HIS 145 CD2 56 1 Y 1 A HIS 145 ? CE1 ? A HIS 145 CE1 57 1 Y 1 A HIS 145 ? NE2 ? A HIS 145 NE2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . B 2 HOH 21 221 21 HOH HOH A . B 2 HOH 22 222 22 HOH HOH A . B 2 HOH 23 223 23 HOH HOH A . B 2 HOH 24 224 24 HOH HOH A . B 2 HOH 25 225 25 HOH HOH A . B 2 HOH 26 226 26 HOH HOH A . B 2 HOH 27 227 27 HOH HOH A . B 2 HOH 28 228 28 HOH HOH A . B 2 HOH 29 229 29 HOH HOH A . B 2 HOH 30 230 30 HOH HOH A . B 2 HOH 31 231 31 HOH HOH A . B 2 HOH 32 232 32 HOH HOH A . B 2 HOH 33 233 33 HOH HOH A . B 2 HOH 34 234 34 HOH HOH A . B 2 HOH 35 235 35 HOH HOH A . B 2 HOH 36 236 36 HOH HOH A . B 2 HOH 37 237 37 HOH HOH A . B 2 HOH 38 238 38 HOH HOH A . B 2 HOH 39 239 39 HOH HOH A . B 2 HOH 40 240 40 HOH HOH A . B 2 HOH 41 241 41 HOH HOH A . B 2 HOH 42 242 42 HOH HOH A . B 2 HOH 43 243 43 HOH HOH A . B 2 HOH 44 244 44 HOH HOH A . B 2 HOH 45 245 45 HOH HOH A . B 2 HOH 46 246 46 HOH HOH A . B 2 HOH 47 247 47 HOH HOH A . B 2 HOH 48 248 48 HOH HOH A . B 2 HOH 49 249 49 HOH HOH A . B 2 HOH 50 250 50 HOH HOH A . B 2 HOH 51 251 51 HOH HOH A . B 2 HOH 52 252 52 HOH HOH A . B 2 HOH 53 253 53 HOH HOH A . B 2 HOH 54 254 54 HOH HOH A . B 2 HOH 55 255 55 HOH HOH A . B 2 HOH 56 256 56 HOH HOH A . B 2 HOH 57 257 57 HOH HOH A . B 2 HOH 58 258 58 HOH HOH A . B 2 HOH 59 259 59 HOH HOH A . B 2 HOH 60 260 60 HOH HOH A . B 2 HOH 61 261 61 HOH HOH A . B 2 HOH 62 262 62 HOH HOH A . B 2 HOH 63 263 63 HOH HOH A . B 2 HOH 64 264 64 HOH HOH A . B 2 HOH 65 265 65 HOH HOH A . B 2 HOH 66 266 66 HOH HOH A . B 2 HOH 67 267 67 HOH HOH A . B 2 HOH 68 268 68 HOH HOH A . B 2 HOH 69 269 69 HOH HOH A . B 2 HOH 70 270 70 HOH HOH A . B 2 HOH 71 271 71 HOH HOH A . B 2 HOH 72 272 72 HOH HOH A . B 2 HOH 73 273 73 HOH HOH A . B 2 HOH 74 274 74 HOH HOH A . B 2 HOH 75 275 75 HOH HOH A . B 2 HOH 76 276 76 HOH HOH A . B 2 HOH 77 277 77 HOH HOH A . B 2 HOH 78 278 78 HOH HOH A . B 2 HOH 79 279 79 HOH HOH A . B 2 HOH 80 280 80 HOH HOH A . B 2 HOH 81 281 81 HOH HOH A . B 2 HOH 82 282 82 HOH HOH A . B 2 HOH 83 283 83 HOH HOH A . B 2 HOH 84 284 84 HOH HOH A . B 2 HOH 85 285 85 HOH HOH A . B 2 HOH 86 286 86 HOH HOH A . B 2 HOH 87 287 87 HOH HOH A . B 2 HOH 88 288 88 HOH HOH A . B 2 HOH 89 289 89 HOH HOH A . B 2 HOH 90 290 90 HOH HOH A . B 2 HOH 91 291 91 HOH HOH A . B 2 HOH 92 292 92 HOH HOH A . B 2 HOH 93 293 93 HOH HOH A . B 2 HOH 94 294 94 HOH HOH A . B 2 HOH 95 295 95 HOH HOH A . B 2 HOH 96 296 96 HOH HOH A . B 2 HOH 97 297 97 HOH HOH A . B 2 HOH 98 298 98 HOH HOH A . B 2 HOH 99 299 99 HOH HOH A . B 2 HOH 100 300 100 HOH HOH A . B 2 HOH 101 301 101 HOH HOH A . B 2 HOH 102 302 102 HOH HOH A . B 2 HOH 103 303 103 HOH HOH A . B 2 HOH 104 304 104 HOH HOH A . B 2 HOH 105 305 105 HOH HOH A . B 2 HOH 106 306 106 HOH HOH A . B 2 HOH 107 307 107 HOH HOH A . B 2 HOH 108 308 108 HOH HOH A . B 2 HOH 109 309 109 HOH HOH A . B 2 HOH 110 310 110 HOH HOH A . B 2 HOH 111 311 111 HOH HOH A . B 2 HOH 112 312 112 HOH HOH A . B 2 HOH 113 313 113 HOH HOH A . B 2 HOH 114 314 114 HOH HOH A . B 2 HOH 115 315 115 HOH HOH A . B 2 HOH 116 316 116 HOH HOH A . B 2 HOH 117 317 117 HOH HOH A . B 2 HOH 118 318 118 HOH HOH A . B 2 HOH 119 319 119 HOH HOH A . B 2 HOH 120 320 120 HOH HOH A . B 2 HOH 121 321 121 HOH HOH A . B 2 HOH 122 322 122 HOH HOH A . B 2 HOH 123 323 123 HOH HOH A . B 2 HOH 124 324 124 HOH HOH A . B 2 HOH 125 325 125 HOH HOH A . B 2 HOH 126 326 126 HOH HOH A . B 2 HOH 127 327 127 HOH HOH A . B 2 HOH 128 328 128 HOH HOH A . B 2 HOH 129 329 129 HOH HOH A . B 2 HOH 130 330 130 HOH HOH A . B 2 HOH 131 331 131 HOH HOH A . B 2 HOH 132 332 132 HOH HOH A . B 2 HOH 133 333 133 HOH HOH A . B 2 HOH 134 334 134 HOH HOH A . B 2 HOH 135 335 135 HOH HOH A . B 2 HOH 136 336 136 HOH HOH A . B 2 HOH 137 337 137 HOH HOH A . B 2 HOH 138 338 138 HOH HOH A . B 2 HOH 139 339 139 HOH HOH A . B 2 HOH 140 340 140 HOH HOH A . #