HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-MAR-12 3VQE TITLE HIV-1 IN CORE DOMAIN IN COMPLEX WITH [1-(4-FLUOROPHENYL)-5-METHYL-1H- TITLE 2 PYRAZOL-4-YL]METHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: POL POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: INTEGRASE CORE DOMAIN, UNP RESIDUES 771-927; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL43; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23B+ KEYWDS RNASEH, DNA BINDING, DNA CLEAVAGE, DNA INTEGRATION, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.WIELENS,D.K.CHALMERS,M.W.PARKER,M.J.SCANLON REVDAT 2 08-NOV-23 3VQE 1 REMARK SEQADV LINK REVDAT 1 30-JAN-13 3VQE 0 JRNL AUTH J.WIELENS,S.J.HEADEY,D.I.RHODES,R.J.MULDER,O.DOLEZAL, JRNL AUTH 2 J.J.DEADMAN,J.NEWMAN,D.K.CHALMERS,M.W.PARKER,T.S.PEAT, JRNL AUTH 3 M.J.SCANLON JRNL TITL PARALLEL SCREENING OF LOW MOLECULAR WEIGHT FRAGMENT JRNL TITL 2 LIBRARIES: DO DIFFERENCES IN METHODOLOGY AFFECT HIT JRNL TITL 3 IDENTIFICATION? JRNL REF J BIOMOL SCREEN V. 18 147 2013 JRNL REFN ISSN 1087-0571 JRNL PMID 23139382 JRNL DOI 10.1177/1087057112465979 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_986) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8292 - 3.7778 0.98 2629 137 0.2029 0.2143 REMARK 3 2 3.7778 - 2.9998 1.00 2701 142 0.1903 0.2204 REMARK 3 3 2.9998 - 2.6210 1.00 2661 140 0.1898 0.2009 REMARK 3 4 2.6210 - 2.3815 1.00 2664 140 0.1817 0.1845 REMARK 3 5 2.3815 - 2.2109 1.00 2696 142 0.1969 0.2571 REMARK 3 6 2.2109 - 2.0806 1.00 2656 140 0.1912 0.2126 REMARK 3 7 2.0806 - 1.9764 1.00 2640 139 0.1892 0.2358 REMARK 3 8 1.9764 - 1.8904 0.99 2710 143 0.2130 0.2496 REMARK 3 9 1.8904 - 1.8177 1.00 2648 139 0.2170 0.2537 REMARK 3 10 1.8177 - 1.7550 0.99 2670 141 0.2376 0.2532 REMARK 3 11 1.7550 - 1.7001 1.00 2672 140 0.2648 0.2988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 41.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37380 REMARK 3 B22 (A**2) : 0.37380 REMARK 3 B33 (A**2) : -0.74760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2185 REMARK 3 ANGLE : 1.495 2963 REMARK 3 CHIRALITY : 0.083 334 REMARK 3 PLANARITY : 0.006 371 REMARK 3 DIHEDRAL : 14.581 768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3VQE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000095370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9567 REMARK 200 MONOCHROMATOR : DOUBLE MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 31.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : 0.30800 REMARK 200 FOR SHELL : 6.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3L3U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMSO4, 0.1M NA CITRATE PH 4.6, REMARK 280 50MM CDCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.82000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.41000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 56 REMARK 465 ASP A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 141 REMARK 465 PRO A 142 REMARK 465 TYR A 143 REMARK 465 ASN A 144 REMARK 465 PRO A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 GLY A 149 REMARK 465 VAL A 150 REMARK 465 ILE A 151 REMARK 465 GLU A 152 REMARK 465 GLY A 190 REMARK 465 ILE A 191 REMARK 465 GLY A 192 REMARK 465 THR A 210 REMARK 465 LYS A 211 REMARK 465 GLU A 212 REMARK 465 SER B 56 REMARK 465 ASP B 139 REMARK 465 GLY B 140 REMARK 465 ILE B 141 REMARK 465 PRO B 142 REMARK 465 TYR B 143 REMARK 465 ASN B 144 REMARK 465 PRO B 145 REMARK 465 GLN B 146 REMARK 465 SER B 147 REMARK 465 GLN B 148 REMARK 465 GLY B 149 REMARK 465 VAL B 150 REMARK 465 ILE B 151 REMARK 465 GLU B 152 REMARK 465 LYS B 188 REMARK 465 GLY B 189 REMARK 465 GLY B 190 REMARK 465 ILE B 191 REMARK 465 GLY B 192 REMARK 465 GLN B 209 REMARK 465 THR B 210 REMARK 465 LYS B 211 REMARK 465 GLU B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 187 OE1 GLU B 198 2.01 REMARK 500 OE1 GLU B 69 O HOH B 432 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 187 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 HIS A 67 NE2 116.0 REMARK 620 3 GLU A 92 OE1 103.4 94.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1002 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 GLU A 92 OE2 90.5 REMARK 620 3 ASP A 116 OD2 104.1 161.3 REMARK 620 4 HOH A1106 O 165.9 81.3 82.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 HIS B 67 NE2 116.5 REMARK 620 3 GLU B 92 OE1 105.3 92.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 GLU B 92 OE2 89.4 REMARK 620 3 ASP B 116 OD2 104.2 159.0 REMARK 620 4 HOH B 403 O 166.5 82.2 81.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMQ A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMQ B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L3U RELATED DB: PDB REMARK 900 RELATED ID: 3L3V RELATED DB: PDB REMARK 900 RELATED ID: 3OVN RELATED DB: PDB REMARK 900 RELATED ID: 3VQ4 RELATED DB: PDB REMARK 900 RELATED ID: 3VQ5 RELATED DB: PDB REMARK 900 RELATED ID: 3VQ6 RELATED DB: PDB REMARK 900 RELATED ID: 3VQ7 RELATED DB: PDB REMARK 900 RELATED ID: 3VQ8 RELATED DB: PDB REMARK 900 RELATED ID: 3VQ9 RELATED DB: PDB REMARK 900 RELATED ID: 3VQA RELATED DB: PDB REMARK 900 RELATED ID: 3VQB RELATED DB: PDB REMARK 900 RELATED ID: 3VQC RELATED DB: PDB REMARK 900 RELATED ID: 3VQD RELATED DB: PDB REMARK 900 RELATED ID: 3VQP RELATED DB: PDB REMARK 900 RELATED ID: 3VQQ RELATED DB: PDB DBREF 3VQE A 56 212 UNP Q72498 Q72498_9HIV1 771 927 DBREF 3VQE B 56 212 UNP Q72498 Q72498_9HIV1 771 927 SEQADV 3VQE SER A 56 UNP Q72498 CYS 771 ENGINEERED MUTATION SEQADV 3VQE GLY A 123 UNP Q72498 SER 838 ENGINEERED MUTATION SEQADV 3VQE ALA A 124 UNP Q72498 THR 839 ENGINEERED MUTATION SEQADV 3VQE ARG A 127 UNP Q72498 LYS 842 ENGINEERED MUTATION SEQADV 3VQE ASP A 131 UNP Q72498 TRP 846 ENGINEERED MUTATION SEQADV 3VQE ASP A 139 UNP Q72498 PHE 854 ENGINEERED MUTATION SEQADV 3VQE HIS A 185 UNP Q72498 PHE 900 ENGINEERED MUTATION SEQADV 3VQE SER B 56 UNP Q72498 CYS 771 ENGINEERED MUTATION SEQADV 3VQE GLY B 123 UNP Q72498 SER 838 ENGINEERED MUTATION SEQADV 3VQE ALA B 124 UNP Q72498 THR 839 ENGINEERED MUTATION SEQADV 3VQE ARG B 127 UNP Q72498 LYS 842 ENGINEERED MUTATION SEQADV 3VQE ASP B 131 UNP Q72498 TRP 846 ENGINEERED MUTATION SEQADV 3VQE ASP B 139 UNP Q72498 PHE 854 ENGINEERED MUTATION SEQADV 3VQE HIS B 185 UNP Q72498 PHE 900 ENGINEERED MUTATION SEQRES 1 A 157 SER SER PRO GLY ILE TRP GLN LEU ASP CYS THR HIS LEU SEQRES 2 A 157 GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS VAL ALA SER SEQRES 3 A 157 GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA GLU THR GLY SEQRES 4 A 157 GLN GLU THR ALA TYR PHE LEU LEU LYS LEU ALA GLY ARG SEQRES 5 A 157 TRP PRO VAL LYS THR VAL HIS THR ASP ASN GLY SER ASN SEQRES 6 A 157 PHE THR GLY ALA THR VAL ARG ALA ALA CYS ASP TRP ALA SEQRES 7 A 157 GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR ASN PRO GLN SEQRES 8 A 157 SER GLN GLY VAL ILE GLU SER MET ASN LYS GLU LEU LYS SEQRES 9 A 157 LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA GLU HIS LEU SEQRES 10 A 157 LYS THR ALA VAL GLN MET ALA VAL PHE ILE HIS ASN HIS SEQRES 11 A 157 LYS ARG LYS GLY GLY ILE GLY GLY TYR SER ALA GLY GLU SEQRES 12 A 157 ARG ILE VAL ASP ILE ILE ALA THR ASP ILE GLN THR LYS SEQRES 13 A 157 GLU SEQRES 1 B 157 SER SER PRO GLY ILE TRP GLN LEU ASP CYS THR HIS LEU SEQRES 2 B 157 GLU GLY LYS VAL ILE LEU VAL ALA VAL HIS VAL ALA SER SEQRES 3 B 157 GLY TYR ILE GLU ALA GLU VAL ILE PRO ALA GLU THR GLY SEQRES 4 B 157 GLN GLU THR ALA TYR PHE LEU LEU LYS LEU ALA GLY ARG SEQRES 5 B 157 TRP PRO VAL LYS THR VAL HIS THR ASP ASN GLY SER ASN SEQRES 6 B 157 PHE THR GLY ALA THR VAL ARG ALA ALA CYS ASP TRP ALA SEQRES 7 B 157 GLY ILE LYS GLN GLU ASP GLY ILE PRO TYR ASN PRO GLN SEQRES 8 B 157 SER GLN GLY VAL ILE GLU SER MET ASN LYS GLU LEU LYS SEQRES 9 B 157 LYS ILE ILE GLY GLN VAL ARG ASP GLN ALA GLU HIS LEU SEQRES 10 B 157 LYS THR ALA VAL GLN MET ALA VAL PHE ILE HIS ASN HIS SEQRES 11 B 157 LYS ARG LYS GLY GLY ILE GLY GLY TYR SER ALA GLY GLU SEQRES 12 B 157 ARG ILE VAL ASP ILE ILE ALA THR ASP ILE GLN THR LYS SEQRES 13 B 157 GLU HET CD A1001 1 HET CD A1002 1 HET CL A1003 1 HET SO4 A1004 5 HET SO4 A1005 5 HET FMQ A1006 15 HET CD B 301 1 HET CD B 302 1 HET CL B 303 1 HET SO4 B 304 5 HET SO4 B 305 5 HET FMQ B 306 15 HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM FMQ [1-(4-FLUOROPHENYL)-5-METHYL-1H-PYRAZOL-4-YL]METHANOL FORMUL 3 CD 4(CD 2+) FORMUL 5 CL 2(CL 1-) FORMUL 6 SO4 4(O4 S 2-) FORMUL 8 FMQ 2(C11 H11 F N2 O) FORMUL 15 HOH *77(H2 O) HELIX 1 1 THR A 93 TRP A 108 1 16 HELIX 2 2 GLY A 118 THR A 122 5 5 HELIX 3 3 GLY A 123 GLY A 134 1 12 HELIX 4 4 MET A 154 ARG A 166 1 13 HELIX 5 5 ASP A 167 ALA A 169 5 3 HELIX 6 6 HIS A 171 LYS A 186 1 16 HELIX 7 7 SER A 195 GLN A 209 1 15 HELIX 8 8 THR B 93 GLY B 106 1 14 HELIX 9 9 GLY B 118 THR B 122 5 5 HELIX 10 10 GLY B 123 GLY B 134 1 12 HELIX 11 11 MET B 154 ARG B 166 1 13 HELIX 12 12 ASP B 167 ALA B 169 5 3 HELIX 13 13 HIS B 171 LYS B 186 1 16 HELIX 14 14 SER B 195 ILE B 208 1 14 SHEET 1 A 5 ILE A 84 ILE A 89 0 SHEET 2 A 5 LYS A 71 HIS A 78 -1 N ALA A 76 O GLU A 85 SHEET 3 A 5 ILE A 60 LEU A 68 -1 N GLN A 62 O VAL A 77 SHEET 4 A 5 THR A 112 HIS A 114 1 O HIS A 114 N LEU A 63 SHEET 5 A 5 LYS A 136 GLN A 137 1 O LYS A 136 N VAL A 113 SHEET 1 B 5 ILE B 84 ILE B 89 0 SHEET 2 B 5 LYS B 71 HIS B 78 -1 N ALA B 76 O GLU B 85 SHEET 3 B 5 ILE B 60 LEU B 68 -1 N GLN B 62 O VAL B 77 SHEET 4 B 5 THR B 112 HIS B 114 1 O HIS B 114 N LEU B 63 SHEET 5 B 5 LYS B 136 GLN B 137 1 O LYS B 136 N VAL B 113 LINK SG CYS A 65 CD CD A1001 1555 1555 2.53 LINK SG CYS A 65 CD CD A1002 1555 1555 2.57 LINK NE2 HIS A 67 CD CD A1001 1555 1555 2.23 LINK OE1 GLU A 92 CD CD A1001 1555 1555 2.16 LINK OE2 GLU A 92 CD CD A1002 1555 1555 2.57 LINK OD2 ASP A 116 CD CD A1002 1555 1555 2.37 LINK CD CD A1002 O HOH A1106 1555 1555 2.32 LINK SG CYS B 65 CD CD B 301 1555 1555 2.52 LINK SG CYS B 65 CD CD B 302 1555 1555 2.56 LINK NE2 HIS B 67 CD CD B 301 1555 1555 2.22 LINK OE1 GLU B 92 CD CD B 301 1555 1555 2.21 LINK OE2 GLU B 92 CD CD B 302 1555 1555 2.61 LINK OD2 ASP B 116 CD CD B 302 1555 1555 2.35 LINK CD CD B 302 O HOH B 403 1555 1555 2.36 SITE 1 AC1 4 CYS A 65 HIS A 67 GLU A 92 ASP B 131 SITE 1 AC2 6 CYS A 65 GLU A 92 ASP A 116 CL A1003 SITE 2 AC2 6 HOH A1106 HOH B 402 SITE 1 AC3 4 CYS A 65 ASP A 116 ASN A 120 CD A1002 SITE 1 AC4 6 LYS A 71 ARG A 166 GLU A 170 HIS A 171 SITE 2 AC4 6 LEU A 172 HOH A1126 SITE 1 AC5 4 THR A 66 HIS A 67 LYS A 159 ARG B 127 SITE 1 AC6 8 HIS A 185 ARG A 187 SER A 195 GLY A 197 SITE 2 AC6 8 GLU A 198 VAL A 201 PRO B 109 ILE B 204 SITE 1 AC7 4 ASP A 131 CYS B 65 HIS B 67 GLU B 92 SITE 1 AC8 6 HOH A1105 CYS B 65 GLU B 92 ASP B 116 SITE 2 AC8 6 CL B 303 HOH B 403 SITE 1 AC9 4 CYS B 65 ASP B 116 ASN B 120 CD B 302 SITE 1 BC1 7 LYS B 71 ARG B 166 GLU B 170 HIS B 171 SITE 2 BC1 7 LEU B 172 HOH B 419 HOH B 432 SITE 1 BC2 4 ARG A 127 THR B 66 HIS B 67 LYS B 159 SITE 1 BC3 10 PRO A 109 LYS A 111 ILE A 204 HIS B 185 SITE 2 BC3 10 ARG B 187 SER B 195 GLY B 197 GLU B 198 SITE 3 BC3 10 VAL B 201 HOH B 405 CRYST1 49.460 49.460 103.230 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020218 0.011673 0.000000 0.00000 SCALE2 0.000000 0.023346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009687 0.00000