data_3VRS # _entry.id 3VRS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VRS pdb_00003vrs 10.2210/pdb3vrs/pdb NDB NA1734 ? ? RCSB RCSB095420 ? ? WWPDB D_1000095420 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4EN5 . unspecified PDB 4ENA . unspecified PDB 4ENB . unspecified PDB 4ENC . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3VRS _pdbx_database_status.recvd_initial_deposition_date 2012-04-13 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, A.M.' 1 'Rajashankar, K.R.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch.' _citation.journal_abbrev Nature _citation.journal_volume 486 _citation.page_first 85 _citation.page_last 89 _citation.year 2012 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22678284 _citation.pdbx_database_id_DOI 10.1038/nature11152 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ren, A.' 1 ? primary 'Rajashankar, K.R.' 2 ? primary 'Patel, D.J.' 3 ? # _cell.entry_id 3VRS _cell.length_a 57.846 _cell.length_b 77.203 _cell.length_c 42.094 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3VRS _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Fluoride riboswitch' 16777.037 1 ? ? ? ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 9 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 non-polymer syn 'FLUORIDE ION' 18.998 1 ? ? ? ? 5 water nat water 18.015 19 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG _entity_poly.pdbx_seq_one_letter_code_can GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 G n 1 6 A n 1 7 U n 1 8 G n 1 9 A n 1 10 G n 1 11 G n 1 12 C n 1 13 C n 1 14 C n 1 15 G n 1 16 C n 1 17 C n 1 18 C n 1 19 A n 1 20 A n 1 21 A n 1 22 C n 1 23 U n 1 24 G n 1 25 C n 1 26 C n 1 27 C n 1 28 U n 1 29 G n 1 30 A n 1 31 A n 1 32 A n 1 33 A n 1 34 G n 1 35 G n 1 36 G n 1 37 C n 1 38 U n 1 39 G n 1 40 A n 1 41 U n 1 42 G n 1 43 G n 1 44 C n 1 45 C n 1 46 U n 1 47 C n 1 48 U n 1 49 A n 1 50 C n 1 51 U n 1 52 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Thermotoga petrophila' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 93929 _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription with T7 RNA polymerase.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3VRS _struct_ref.pdbx_db_accession 3VRS _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3VRS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3VRS _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 52 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 F non-polymer . 'FLUORIDE ION' ? 'F -1' 18.998 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3VRS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_percent_sol 56.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;0.1 M sodium cacodylate, pH 7.0, 20 mM spermine, 160 mM potassium chloride, 50 mM manganese chloride, 20% MPD, VAPOR DIFFUSION, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.7712 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.7712 # _reflns.entry_id 3VRS _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.6 _reflns.number_obs 6020 _reflns.number_all 6168 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value 0.074 _reflns.pdbx_netI_over_sigmaI 11.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3VRS _refine.ls_number_reflns_obs 6020 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.779 _refine.ls_d_res_high 2.603 _refine.ls_percent_reflns_obs 92.85 _refine.ls_R_factor_obs 0.2238 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2195 _refine.ls_R_factor_R_free 0.2617 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.15 _refine.ls_number_reflns_R_free 275 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 4.9229 _refine.aniso_B[2][2] -9.6741 _refine.aniso_B[3][3] 4.7512 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.350 _refine.solvent_model_param_bsol 44.111 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 4ENB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.60 _refine.pdbx_overall_phase_error 29.48 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1109 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 1139 _refine_hist.d_res_high 2.603 _refine_hist.d_res_low 19.779 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.028 ? ? 1272 ? 'X-RAY DIFFRACTION' f_angle_d 0.884 ? ? 1994 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 13.398 ? ? 619 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.062 ? ? 259 ? 'X-RAY DIFFRACTION' f_plane_restr 0.009 ? ? 52 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.603 2.7207 1152 0.5081 92.0 0.5446 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.7207 2.8637 1152 0.4632 91.0 0.5095 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.8637 3.0426 1171 0.3497 93.0 0.4146 . . 126 . . . . 'X-RAY DIFFRACTION' . 3.0426 3.2765 1168 0.2383 93.0 0.2856 . . 133 . . . . 'X-RAY DIFFRACTION' . 3.2765 3.6044 1146 0.2381 92.0 0.2493 . . 131 . . . . 'X-RAY DIFFRACTION' . 3.6044 4.1219 1170 0.2157 94.0 0.2876 . . 142 . . . . 'X-RAY DIFFRACTION' . 4.1219 5.1777 1177 0.1645 94.0 0.1893 . . 136 . . . . 'X-RAY DIFFRACTION' . 5.1777 19.7791 1173 0.1676 93.0 0.2144 . . 125 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3VRS _struct.title 'Crystal structure of fluoride riboswitch, soaked in Mn2+' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VRS _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'pseudoknot, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 4 ? M N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 2 N7 ? ? ? 1_555 E MN . MN ? ? A G 2 A MN 104 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc2 metalc ? ? A G 5 OP1 ? ? ? 1_555 K K . K ? ? A G 5 A K 110 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc3 metalc ? ? A A 6 OP2 ? ? ? 1_555 B MN . MN ? ? A A 6 A MN 101 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc4 metalc ? ? A A 6 OP1 ? ? ? 1_555 C MN . MN ? ? A A 6 A MN 102 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc5 metalc ? ? A A 6 OP1 ? ? ? 1_555 K K . K ? ? A A 6 A K 110 1_555 ? ? ? ? ? ? ? 3.106 ? ? metalc6 metalc ? ? A A 6 "O3'" ? ? ? 1_555 K K . K ? ? A A 6 A K 110 1_555 ? ? ? ? ? ? ? 3.227 ? ? metalc7 metalc ? ? A U 7 OP2 ? ? ? 1_555 B MN . MN ? ? A U 7 A MN 101 1_555 ? ? ? ? ? ? ? 1.936 ? ? metalc8 metalc ? ? A U 7 OP1 ? ? ? 1_555 D MN . MN ? ? A U 7 A MN 103 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc9 metalc ? ? A U 7 OP1 ? ? ? 1_555 K K . K ? ? A U 7 A K 110 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc10 metalc ? ? A G 8 OP2 ? ? ? 1_555 D MN . MN ? ? A G 8 A MN 103 1_555 ? ? ? ? ? ? ? 1.947 ? ? metalc11 metalc ? ? A G 24 N7 ? ? ? 1_555 G MN . MN ? ? A G 24 A MN 106 1_555 ? ? ? ? ? ? ? 2.658 ? ? metalc12 metalc ? ? A G 29 OP2 ? ? ? 1_555 J MN . MN ? ? A G 29 A MN 109 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc13 metalc ? ? A G 35 N7 ? ? ? 1_555 H MN . MN ? ? A G 35 A MN 107 1_555 ? ? ? ? ? ? ? 2.582 ? ? metalc14 metalc ? ? A A 40 OP2 ? ? ? 1_555 F MN . MN ? ? A A 40 A MN 105 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc15 metalc ? ? A U 41 OP1 ? ? ? 1_555 B MN . MN ? ? A U 41 A MN 101 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc16 metalc ? ? A G 42 OP2 ? ? ? 1_555 B MN . MN ? ? A G 42 A MN 101 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc17 metalc ? ? A G 42 OP1 ? ? ? 1_555 C MN . MN ? ? A G 42 A MN 102 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc18 metalc ? ? B MN . MN ? ? ? 1_555 L F . F ? ? A MN 101 A F 111 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc19 metalc ? ? B MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 101 A HOH 204 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc20 metalc ? ? C MN . MN ? ? ? 1_555 L F . F ? ? A MN 102 A F 111 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc21 metalc ? ? C MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 102 A HOH 202 1_555 ? ? ? ? ? ? ? 2.172 ? ? metalc22 metalc ? ? C MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 102 A HOH 211 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc23 metalc ? ? C MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 102 A HOH 213 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc24 metalc ? ? D MN . MN ? ? ? 1_555 L F . F ? ? A MN 103 A F 111 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc25 metalc ? ? D MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 103 A HOH 201 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc26 metalc ? ? D MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 103 A HOH 203 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc27 metalc ? ? D MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc28 metalc ? ? E MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 104 A HOH 215 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc29 metalc ? ? E MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 104 A HOH 218 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc30 metalc ? ? F MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 105 A HOH 205 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc31 metalc ? ? F MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 105 A HOH 206 1_555 ? ? ? ? ? ? ? 2.266 ? ? metalc32 metalc ? ? F MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 105 A HOH 209 1_555 ? ? ? ? ? ? ? 2.239 ? ? metalc33 metalc ? ? F MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 105 A HOH 210 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc34 metalc ? ? K K . K ? ? ? 1_555 M HOH . O ? ? A K 110 A HOH 211 1_555 ? ? ? ? ? ? ? 2.774 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 2 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 2 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 2 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 3 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 3 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 3 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A A 21 N3 ? ? A G 3 A A 21 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog8 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 4 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 4 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 4 A G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 5 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 5 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 5 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 38 N3 ? ? A A 6 A U 38 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 38 O2 ? ? A A 6 A U 38 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog16 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 8 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 8 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 8 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 46 N3 ? ? A A 9 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 46 O4 ? ? A A 9 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 10 A C 45 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 11 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 11 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 11 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 12 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 12 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 12 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 13 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 13 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 13 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 24 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 24 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 24 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 25 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 25 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 25 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 26 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 26 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 26 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 27 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 27 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 27 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 28 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 28 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 32 N7 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog46 hydrog ? ? A A 40 N6 ? ? ? 1_555 A U 48 O2 ? ? A A 40 A U 48 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A A 40 N7 ? ? ? 1_555 A U 48 N3 ? ? A A 40 A U 48 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 101 ? 7 'BINDING SITE FOR RESIDUE MN A 101' AC2 Software A MN 102 ? 8 'BINDING SITE FOR RESIDUE MN A 102' AC3 Software A MN 103 ? 7 'BINDING SITE FOR RESIDUE MN A 103' AC4 Software A MN 104 ? 3 'BINDING SITE FOR RESIDUE MN A 104' AC5 Software A MN 105 ? 5 'BINDING SITE FOR RESIDUE MN A 105' AC6 Software A MN 106 ? 1 'BINDING SITE FOR RESIDUE MN A 106' AC7 Software A MN 107 ? 1 'BINDING SITE FOR RESIDUE MN A 107' AC8 Software A MN 108 ? 1 'BINDING SITE FOR RESIDUE MN A 108' AC9 Software A MN 109 ? 2 'BINDING SITE FOR RESIDUE MN A 109' BC1 Software A K 110 ? 4 'BINDING SITE FOR RESIDUE K A 110' BC2 Software A F 111 ? 11 'BINDING SITE FOR RESIDUE F A 111' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 A A 6 ? A A 6 . ? 1_555 ? 2 AC1 7 U A 7 ? U A 7 . ? 1_555 ? 3 AC1 7 U A 41 ? U A 41 . ? 1_555 ? 4 AC1 7 G A 42 ? G A 42 . ? 1_555 ? 5 AC1 7 MN C . ? MN A 102 . ? 1_555 ? 6 AC1 7 F L . ? F A 111 . ? 1_555 ? 7 AC1 7 HOH M . ? HOH A 204 . ? 1_555 ? 8 AC2 8 A A 6 ? A A 6 . ? 1_555 ? 9 AC2 8 G A 42 ? G A 42 . ? 1_555 ? 10 AC2 8 MN B . ? MN A 101 . ? 1_555 ? 11 AC2 8 MN D . ? MN A 103 . ? 1_555 ? 12 AC2 8 F L . ? F A 111 . ? 1_555 ? 13 AC2 8 HOH M . ? HOH A 202 . ? 1_555 ? 14 AC2 8 HOH M . ? HOH A 211 . ? 1_555 ? 15 AC2 8 HOH M . ? HOH A 213 . ? 1_555 ? 16 AC3 7 U A 7 ? U A 7 . ? 1_555 ? 17 AC3 7 G A 8 ? G A 8 . ? 1_555 ? 18 AC3 7 MN C . ? MN A 102 . ? 1_555 ? 19 AC3 7 F L . ? F A 111 . ? 1_555 ? 20 AC3 7 HOH M . ? HOH A 201 . ? 1_555 ? 21 AC3 7 HOH M . ? HOH A 203 . ? 1_555 ? 22 AC3 7 HOH M . ? HOH A 211 . ? 1_555 ? 23 AC4 3 G A 2 ? G A 2 . ? 1_555 ? 24 AC4 3 HOH M . ? HOH A 215 . ? 1_555 ? 25 AC4 3 HOH M . ? HOH A 218 . ? 1_555 ? 26 AC5 5 A A 40 ? A A 40 . ? 1_555 ? 27 AC5 5 HOH M . ? HOH A 205 . ? 1_555 ? 28 AC5 5 HOH M . ? HOH A 206 . ? 1_555 ? 29 AC5 5 HOH M . ? HOH A 209 . ? 1_555 ? 30 AC5 5 HOH M . ? HOH A 210 . ? 1_555 ? 31 AC6 1 G A 24 ? G A 24 . ? 1_555 ? 32 AC7 1 G A 35 ? G A 35 . ? 1_555 ? 33 AC8 1 G A 29 ? G A 29 . ? 1_555 ? 34 AC9 2 G A 29 ? G A 29 . ? 1_555 ? 35 AC9 2 A A 30 ? A A 30 . ? 1_555 ? 36 BC1 4 G A 5 ? G A 5 . ? 1_555 ? 37 BC1 4 A A 6 ? A A 6 . ? 1_555 ? 38 BC1 4 U A 7 ? U A 7 . ? 1_555 ? 39 BC1 4 HOH M . ? HOH A 211 . ? 1_555 ? 40 BC2 11 A A 6 ? A A 6 . ? 1_555 ? 41 BC2 11 U A 7 ? U A 7 . ? 1_555 ? 42 BC2 11 U A 41 ? U A 41 . ? 1_555 ? 43 BC2 11 G A 42 ? G A 42 . ? 1_555 ? 44 BC2 11 MN B . ? MN A 101 . ? 1_555 ? 45 BC2 11 MN C . ? MN A 102 . ? 1_555 ? 46 BC2 11 MN D . ? MN A 103 . ? 1_555 ? 47 BC2 11 HOH M . ? HOH A 201 . ? 1_555 ? 48 BC2 11 HOH M . ? HOH A 203 . ? 1_555 ? 49 BC2 11 HOH M . ? HOH A 211 . ? 1_555 ? 50 BC2 11 HOH M . ? HOH A 213 . ? 1_555 ? # _database_PDB_matrix.entry_id 3VRS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3VRS _atom_sites.fract_transf_matrix[1][1] 0.017287 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] -0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012953 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023756 _atom_sites.fract_transf_vector[1] -0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] -0.00000 # loop_ _atom_type.symbol C F K MN N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 U 23 23 23 U U A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 A 31 31 31 A A A . n A 1 32 A 32 32 32 A A A . n A 1 33 A 33 33 33 A A A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 C 37 37 37 C C A . n A 1 38 U 38 38 38 U U A . n A 1 39 G 39 39 39 G G A . n A 1 40 A 40 40 40 A A A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 C 44 44 44 C C A . n A 1 45 C 45 45 45 C C A . n A 1 46 U 46 46 46 U U A . n A 1 47 C 47 47 47 C C A . n A 1 48 U 48 48 48 U U A . n A 1 49 A 49 49 49 A A A . n A 1 50 C 50 50 50 C C A . n A 1 51 U 51 51 51 U U A . n A 1 52 G 52 52 52 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 101 1 MN MN A . C 2 MN 1 102 2 MN MN A . D 2 MN 1 103 3 MN MN A . E 2 MN 1 104 4 MN MN A . F 2 MN 1 105 5 MN MN A . G 2 MN 1 106 6 MN MN A . H 2 MN 1 107 7 MN MN A . I 2 MN 1 108 8 MN MN A . J 2 MN 1 109 9 MN MN A . K 3 K 1 110 1 K K A . L 4 F 1 111 1 F F A . M 5 HOH 1 201 1 HOH HOH A . M 5 HOH 2 202 2 HOH HOH A . M 5 HOH 3 203 4 HOH HOH A . M 5 HOH 4 204 5 HOH HOH A . M 5 HOH 5 205 6 HOH HOH A . M 5 HOH 6 206 7 HOH HOH A . M 5 HOH 7 207 8 HOH HOH A . M 5 HOH 8 208 9 HOH HOH A . M 5 HOH 9 209 12 HOH HOH A . M 5 HOH 10 210 13 HOH HOH A . M 5 HOH 11 211 20 HOH HOH A . M 5 HOH 12 212 21 HOH HOH A . M 5 HOH 13 213 25 HOH HOH A . M 5 HOH 14 214 26 HOH HOH A . M 5 HOH 15 215 27 HOH HOH A . M 5 HOH 16 216 29 HOH HOH A . M 5 HOH 17 217 31 HOH HOH A . M 5 HOH 18 218 32 HOH HOH A . M 5 HOH 19 219 33 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A G 2 ? A G 2 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? M HOH . ? A HOH 215 ? 1_555 67.4 ? 2 N7 ? A G 2 ? A G 2 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? M HOH . ? A HOH 218 ? 1_555 125.1 ? 3 O ? M HOH . ? A HOH 215 ? 1_555 MN ? E MN . ? A MN 104 ? 1_555 O ? M HOH . ? A HOH 218 ? 1_555 131.5 ? 4 OP1 ? A G 5 ? A G 5 ? 1_555 K ? K K . ? A K 110 ? 1_555 OP1 ? A A 6 ? A A 6 ? 1_555 76.7 ? 5 OP1 ? A G 5 ? A G 5 ? 1_555 K ? K K . ? A K 110 ? 1_555 "O3'" ? A A 6 ? A A 6 ? 1_555 133.0 ? 6 OP1 ? A A 6 ? A A 6 ? 1_555 K ? K K . ? A K 110 ? 1_555 "O3'" ? A A 6 ? A A 6 ? 1_555 75.0 ? 7 OP1 ? A G 5 ? A G 5 ? 1_555 K ? K K . ? A K 110 ? 1_555 OP1 ? A U 7 ? A U 7 ? 1_555 154.0 ? 8 OP1 ? A A 6 ? A A 6 ? 1_555 K ? K K . ? A K 110 ? 1_555 OP1 ? A U 7 ? A U 7 ? 1_555 80.1 ? 9 "O3'" ? A A 6 ? A A 6 ? 1_555 K ? K K . ? A K 110 ? 1_555 OP1 ? A U 7 ? A U 7 ? 1_555 48.7 ? 10 OP1 ? A G 5 ? A G 5 ? 1_555 K ? K K . ? A K 110 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 95.2 ? 11 OP1 ? A A 6 ? A A 6 ? 1_555 K ? K K . ? A K 110 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 65.3 ? 12 "O3'" ? A A 6 ? A A 6 ? 1_555 K ? K K . ? A K 110 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 105.9 ? 13 OP1 ? A U 7 ? A U 7 ? 1_555 K ? K K . ? A K 110 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 64.2 ? 14 OP2 ? A A 6 ? A A 6 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 OP2 ? A U 7 ? A U 7 ? 1_555 90.6 ? 15 OP2 ? A A 6 ? A A 6 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 OP1 ? A U 41 ? A U 41 ? 1_555 164.5 ? 16 OP2 ? A U 7 ? A U 7 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 OP1 ? A U 41 ? A U 41 ? 1_555 85.4 ? 17 OP2 ? A A 6 ? A A 6 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 OP2 ? A G 42 ? A G 42 ? 1_555 89.8 ? 18 OP2 ? A U 7 ? A U 7 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 OP2 ? A G 42 ? A G 42 ? 1_555 175.5 ? 19 OP1 ? A U 41 ? A U 41 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 OP2 ? A G 42 ? A G 42 ? 1_555 93.1 ? 20 OP2 ? A A 6 ? A A 6 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 F ? L F . ? A F 111 ? 1_555 99.9 ? 21 OP2 ? A U 7 ? A U 7 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 F ? L F . ? A F 111 ? 1_555 98.0 ? 22 OP1 ? A U 41 ? A U 41 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 F ? L F . ? A F 111 ? 1_555 95.5 ? 23 OP2 ? A G 42 ? A G 42 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 F ? L F . ? A F 111 ? 1_555 86.3 ? 24 OP2 ? A A 6 ? A A 6 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 74.6 ? 25 OP2 ? A U 7 ? A U 7 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 85.8 ? 26 OP1 ? A U 41 ? A U 41 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 90.1 ? 27 OP2 ? A G 42 ? A G 42 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 90.0 ? 28 F ? L F . ? A F 111 ? 1_555 MN ? B MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 173.4 ? 29 OP1 ? A A 6 ? A A 6 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 OP1 ? A G 42 ? A G 42 ? 1_555 86.5 ? 30 OP1 ? A A 6 ? A A 6 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 F ? L F . ? A F 111 ? 1_555 101.2 ? 31 OP1 ? A G 42 ? A G 42 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 F ? L F . ? A F 111 ? 1_555 84.4 ? 32 OP1 ? A A 6 ? A A 6 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 202 ? 1_555 88.1 ? 33 OP1 ? A G 42 ? A G 42 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 202 ? 1_555 93.1 ? 34 F ? L F . ? A F 111 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 202 ? 1_555 170.1 ? 35 OP1 ? A A 6 ? A A 6 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 92.1 ? 36 OP1 ? A G 42 ? A G 42 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 170.0 ? 37 F ? L F . ? A F 111 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 86.2 ? 38 O ? M HOH . ? A HOH 202 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 96.7 ? 39 OP1 ? A A 6 ? A A 6 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 166.1 ? 40 OP1 ? A G 42 ? A G 42 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 104.3 ? 41 F ? L F . ? A F 111 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 88.8 ? 42 O ? M HOH . ? A HOH 202 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 82.6 ? 43 O ? M HOH . ? A HOH 211 ? 1_555 MN ? C MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 78.7 ? 44 OP1 ? A U 7 ? A U 7 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 OP2 ? A G 8 ? A G 8 ? 1_555 100.0 ? 45 OP1 ? A U 7 ? A U 7 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 F ? L F . ? A F 111 ? 1_555 96.1 ? 46 OP2 ? A G 8 ? A G 8 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 F ? L F . ? A F 111 ? 1_555 160.5 ? 47 OP1 ? A U 7 ? A U 7 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 201 ? 1_555 88.9 ? 48 OP2 ? A G 8 ? A G 8 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 201 ? 1_555 84.3 ? 49 F ? L F . ? A F 111 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 201 ? 1_555 85.1 ? 50 OP1 ? A U 7 ? A U 7 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 173.2 ? 51 OP2 ? A G 8 ? A G 8 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 82.3 ? 52 F ? L F . ? A F 111 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 82.9 ? 53 O ? M HOH . ? A HOH 201 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 97.8 ? 54 OP1 ? A U 7 ? A U 7 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 84.5 ? 55 OP2 ? A G 8 ? A G 8 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 107.9 ? 56 F ? L F . ? A F 111 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 84.4 ? 57 O ? M HOH . ? A HOH 201 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 166.9 ? 58 O ? M HOH . ? A HOH 203 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 88.7 ? 59 OP2 ? A A 40 ? A A 40 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 169.3 ? 60 OP2 ? A A 40 ? A A 40 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 206 ? 1_555 84.7 ? 61 O ? M HOH . ? A HOH 205 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 206 ? 1_555 87.4 ? 62 OP2 ? A A 40 ? A A 40 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 209 ? 1_555 86.0 ? 63 O ? M HOH . ? A HOH 205 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 209 ? 1_555 84.9 ? 64 O ? M HOH . ? A HOH 206 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 209 ? 1_555 73.7 ? 65 OP2 ? A A 40 ? A A 40 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 95.0 ? 66 O ? M HOH . ? A HOH 205 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 90.8 ? 67 O ? M HOH . ? A HOH 206 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 80.4 ? 68 O ? M HOH . ? A HOH 209 ? 1_555 MN ? F MN . ? A MN 105 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 153.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-09 2 'Structure model' 1 1 2012-06-20 3 'Structure model' 1 2 2013-02-13 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 34 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 35 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 211 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 217 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id G _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id "O5'" _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id G _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id "O5'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 F F F N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 K K K N N 115 MN MN MN N N 116 U OP3 O N N 117 U P P N N 118 U OP1 O N N 119 U OP2 O N N 120 U "O5'" O N N 121 U "C5'" C N N 122 U "C4'" C N R 123 U "O4'" O N N 124 U "C3'" C N S 125 U "O3'" O N N 126 U "C2'" C N R 127 U "O2'" O N N 128 U "C1'" C N R 129 U N1 N N N 130 U C2 C N N 131 U O2 O N N 132 U N3 N N N 133 U C4 C N N 134 U O4 O N N 135 U C5 C N N 136 U C6 C N N 137 U HOP3 H N N 138 U HOP2 H N N 139 U "H5'" H N N 140 U "H5''" H N N 141 U "H4'" H N N 142 U "H3'" H N N 143 U "HO3'" H N N 144 U "H2'" H N N 145 U "HO2'" H N N 146 U "H1'" H N N 147 U H3 H N N 148 U H5 H N N 149 U H6 H N N 150 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3VRS 'double helix' 3VRS 'a-form double helix' 3VRS tetraloop 3VRS 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 17 1_555 0.045 -0.200 0.791 12.785 -1.271 -2.614 1 A_G2:C17_A A 2 ? A 17 ? 19 1 1 A G 3 1_555 A C 16 1_555 -0.674 -0.121 0.286 3.065 -14.897 2.779 2 A_G3:C16_A A 3 ? A 16 ? 19 1 1 A C 4 1_555 A G 15 1_555 0.405 -0.205 0.522 0.755 -9.723 -0.710 3 A_C4:G15_A A 4 ? A 15 ? 19 1 1 A G 5 1_555 A C 14 1_555 -0.198 -0.046 0.170 -3.191 3.229 3.709 4 A_G5:C14_A A 5 ? A 14 ? 19 1 1 A G 42 1_555 A C 13 1_555 -0.374 0.025 -0.271 -5.144 -8.699 5.701 5 A_G42:C13_A A 42 ? A 13 ? 19 1 1 A G 43 1_555 A C 12 1_555 -0.087 -0.045 0.284 14.478 3.956 3.095 6 A_G43:C12_A A 43 ? A 12 ? 19 1 1 A C 44 1_555 A G 11 1_555 0.020 -0.065 -0.221 9.446 1.544 1.106 7 A_C44:G11_A A 44 ? A 11 ? 19 1 1 A C 45 1_555 A G 10 1_555 0.343 0.272 1.190 -15.354 11.504 10.134 8 A_C45:G10_A A 45 ? A 10 ? ? 1 1 A U 46 1_555 A A 9 1_555 0.380 -0.229 -0.526 15.001 -15.497 3.294 9 A_U46:A9_A A 46 ? A 9 ? 20 1 1 A C 47 1_555 A G 8 1_555 0.396 -0.108 0.532 -4.387 -3.400 6.361 10 A_C47:G8_A A 47 ? A 8 ? 19 1 1 A U 48 1_555 A A 40 1_555 4.372 -2.305 -0.592 -16.470 -4.478 -91.089 11 A_U48:A40_A A 48 ? A 40 ? 24 4 1 A A 6 1_555 A U 38 1_555 0.116 1.378 0.357 -8.234 -2.093 164.368 12 A_A6:U38_A A 6 ? A 38 ? 21 2 1 A G 24 1_555 A C 37 1_555 -0.235 -0.014 0.310 9.918 -0.657 6.283 13 A_G24:C37_A A 24 ? A 37 ? 19 1 1 A C 25 1_555 A G 36 1_555 0.089 -0.053 -0.125 11.149 -8.882 6.868 14 A_C25:G36_A A 25 ? A 36 ? 19 1 1 A C 26 1_555 A G 35 1_555 0.781 -0.197 0.012 8.042 -12.290 7.870 15 A_C26:G35_A A 26 ? A 35 ? 19 1 1 A C 27 1_555 A G 34 1_555 -0.313 -0.073 -0.060 2.201 -12.817 2.467 16 A_C27:G34_A A 27 ? A 34 ? 19 1 1 A U 28 1_555 A A 33 1_555 -0.036 -0.155 -0.187 3.121 3.592 3.183 17 A_U28:A33_A A 28 ? A 33 ? 20 1 1 A G 29 1_555 A A 32 1_555 6.920 -5.038 0.892 11.954 8.026 -13.535 18 A_G29:A32_A A 29 ? A 32 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 17 1_555 A G 3 1_555 A C 16 1_555 0.716 -1.956 3.264 5.499 4.494 32.062 -4.215 -0.345 3.047 8.013 -9.806 32.818 1 AA_G2G3:C16C17_AA A 2 ? A 17 ? A 3 ? A 16 ? 1 A G 3 1_555 A C 16 1_555 A C 4 1_555 A G 15 1_555 0.066 -1.788 3.203 -0.827 1.556 38.864 -2.868 -0.196 3.130 2.337 1.243 38.902 2 AA_G3C4:G15C16_AA A 3 ? A 16 ? A 4 ? A 15 ? 1 A C 4 1_555 A G 15 1_555 A G 5 1_555 A C 14 1_555 -0.148 -1.765 3.090 4.421 8.827 30.470 -4.588 0.963 2.451 16.267 -8.147 31.993 3 AA_C4G5:C14G15_AA A 4 ? A 15 ? A 5 ? A 14 ? 1 A G 5 1_555 A C 14 1_555 A G 42 1_555 A C 13 1_555 0.192 -1.918 3.194 6.202 3.308 30.562 -4.144 0.758 2.956 6.174 -11.574 31.341 4 AA_G5G42:C13C14_AA A 5 ? A 14 ? A 42 ? A 13 ? 1 A G 42 1_555 A C 13 1_555 A G 43 1_555 A C 12 1_555 -0.530 -1.329 2.570 -5.181 0.533 33.430 -2.352 0.246 2.600 0.920 8.939 33.822 5 AA_G42G43:C12C13_AA A 42 ? A 13 ? A 43 ? A 12 ? 1 A G 43 1_555 A C 12 1_555 A C 44 1_555 A G 11 1_555 -0.094 -1.520 3.276 2.374 13.102 33.857 -4.123 0.456 2.523 21.494 -3.895 36.309 6 AA_G43C44:G11C12_AA A 43 ? A 12 ? A 44 ? A 11 ? 1 A C 44 1_555 A G 11 1_555 A C 45 1_555 A G 10 1_555 0.415 -1.878 3.681 -7.395 25.522 38.346 -4.473 -1.132 2.013 34.305 9.940 46.366 7 AA_C44C45:G10G11_AA A 44 ? A 11 ? A 45 ? A 10 ? 1 A C 45 1_555 A G 10 1_555 A U 46 1_555 A A 9 1_555 -0.015 -1.966 2.378 13.062 -4.232 29.405 -2.951 1.799 2.409 -7.822 -24.143 32.388 8 AA_C45U46:A9G10_AA A 45 ? A 10 ? A 46 ? A 9 ? 1 A U 46 1_555 A A 9 1_555 A C 47 1_555 A G 8 1_555 -0.243 -2.180 3.644 -11.859 10.195 29.357 -5.575 -1.619 2.664 18.551 21.578 33.182 9 AA_U46C47:G8A9_AA A 46 ? A 9 ? A 47 ? A 8 ? 1 A C 47 1_555 A G 8 1_555 A U 48 1_555 A A 40 1_555 -2.815 -2.021 3.262 11.268 5.507 81.815 -1.658 2.392 2.809 4.183 -8.559 82.604 10 AA_C47U48:A40G8_AA A 47 ? A 8 ? A 48 ? A 40 ? 1 A A 6 1_555 A U 38 1_555 A G 24 1_555 A C 37 1_555 -0.486 -4.007 -0.895 109.980 -132.831 -32.448 0.904 -1.157 -2.916 68.509 56.724 -172.753 11 AA_A6G24:C37U38_AA A 6 ? A 38 ? A 24 ? A 37 ? 1 A G 24 1_555 A C 37 1_555 A C 25 1_555 A G 36 1_555 -0.032 -1.892 3.212 1.519 1.350 30.531 -3.844 0.351 3.122 2.560 -2.881 30.596 12 AA_G24C25:G36C37_AA A 24 ? A 37 ? A 25 ? A 36 ? 1 A C 25 1_555 A G 36 1_555 A C 26 1_555 A G 35 1_555 -0.078 -1.880 3.273 -2.655 6.400 31.819 -4.412 -0.299 2.848 11.503 4.771 32.545 13 AA_C25C26:G35G36_AA A 25 ? A 36 ? A 26 ? A 35 ? 1 A C 26 1_555 A G 35 1_555 A C 27 1_555 A G 34 1_555 -0.750 -2.116 3.247 -0.767 7.194 28.676 -5.549 1.320 2.667 14.241 1.519 29.556 14 AA_C26C27:G34G35_AA A 26 ? A 35 ? A 27 ? A 34 ? 1 A C 27 1_555 A G 34 1_555 A U 28 1_555 A A 33 1_555 0.003 -2.053 3.338 -2.272 4.728 28.632 -5.091 -0.489 2.959 9.460 4.546 29.099 15 AA_C27U28:A33G34_AA A 27 ? A 34 ? A 28 ? A 33 ? 1 A U 28 1_555 A A 33 1_555 A G 29 1_555 A A 32 1_555 -1.937 -1.180 3.002 -1.860 11.528 52.364 -1.957 2.045 2.767 12.882 2.079 53.560 16 AA_U28G29:A32A33_AA A 28 ? A 33 ? A 29 ? A 32 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 'POTASSIUM ION' K 4 'FLUORIDE ION' F 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4ENB _pdbx_initial_refinement_model.details 'PDB ENTRY 4ENB' #