data_3VTM # _entry.id 3VTM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3VTM pdb_00003vtm 10.2210/pdb3vtm/pdb RCSB RCSB095484 ? ? WWPDB D_1000095484 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QUG 'Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Gallium-porphyrin' unspecified PDB 3QUH 'Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Manganese(III)-porphyrin' unspecified PDB 2E7D 'Crystal structure of a NEAT domain from Staphylococcus aureus' unspecified PDB 2Z6F 'Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme' unspecified # _pdbx_database_status.entry_id 3VTM _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2012-05-31 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vu, N.T.' 1 'Caaveiro, J.M.M.' 2 'Moriwaki, Y.' 3 'Tsumoto, K.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Selective binding of antimicrobial porphyrins to the heme-receptor IsdH-NEAT3 of Staphylococcus aureus' 'Protein Sci.' 22 942 953 2013 PRCIEI US 0961-8368 0795 ? 23649633 10.1002/pro.2276 1 'Molecular basis of recognition of antibacterial porphyrins by heme-transporter IsdH-NEAT3 of Staphylococcus aureus.' Biochemistry 50 7311 7320 2011 BICHAW US 0006-2960 0033 ? 21797259 10.1021/bi200493h 2 ;Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus. ; J.Biol.Chem. 283 28649 28659 2008 JBCHA3 US 0021-9258 0071 ? 18667422 10.1074/jbc.M803383200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vu, N.T.' 1 ? primary 'Moriwaki, Y.' 2 ? primary 'Caaveiro, J.M.M.' 3 ? primary 'Terada, T.' 4 ? primary 'Tsutsumi, H.' 5 ? primary 'Hamachi, I.' 6 ? primary 'Shimizu, K.' 7 ? primary 'Tsumoto, K.' 8 ? 1 'Moriwaki, Y.' 9 ? 1 'Caaveiro, J.M.' 10 ? 1 'Tanaka, Y.' 11 ? 1 'Tsutsumi, H.' 12 ? 1 'Hamachi, I.' 13 ? 1 'Tsumoto, K.' 14 ? 2 'Watanabe, M.' 15 ? 2 'Tanaka, Y.' 16 ? 2 'Suenaga, A.' 17 ? 2 'Kuroda, M.' 18 ? 2 'Yao, M.' 19 ? 2 'Watanabe, N.' 20 ? 2 'Arisaka, F.' 21 ? 2 'Ohta, T.' 22 ? 2 'Tanaka, I.' 23 ? 2 'Tsumoto, K.' 24 ? # _cell.length_a 49.460 _cell.length_b 71.010 _cell.length_c 75.800 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3VTM _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.entry_id 3VTM _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Iron-regulated surface determinant protein H' 13003.636 2 ? ? 'NEAT domain, UNP RESIDUES 543-655' ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING INDIUM' 675.460 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Haptoglobin receptor A, Staphylococcus aureus surface protein I' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QLTDLQEAHFVVFESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKNNSRTLIFPY IPDKAVYNAIVKVVVANIGYEGQYHVRIINQDI ; _entity_poly.pdbx_seq_one_letter_code_can ;QLTDLQEAHFVVFESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKNNSRTLIFPY IPDKAVYNAIVKVVVANIGYEGQYHVRIINQDI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 LEU n 1 3 THR n 1 4 ASP n 1 5 LEU n 1 6 GLN n 1 7 GLU n 1 8 ALA n 1 9 HIS n 1 10 PHE n 1 11 VAL n 1 12 VAL n 1 13 PHE n 1 14 GLU n 1 15 SER n 1 16 GLU n 1 17 GLU n 1 18 ASN n 1 19 SER n 1 20 GLU n 1 21 SER n 1 22 VAL n 1 23 MET n 1 24 ASP n 1 25 GLY n 1 26 PHE n 1 27 VAL n 1 28 GLU n 1 29 HIS n 1 30 PRO n 1 31 PHE n 1 32 TYR n 1 33 THR n 1 34 ALA n 1 35 THR n 1 36 LEU n 1 37 ASN n 1 38 GLY n 1 39 GLN n 1 40 LYS n 1 41 TYR n 1 42 VAL n 1 43 VAL n 1 44 MET n 1 45 LYS n 1 46 THR n 1 47 LYS n 1 48 ASP n 1 49 ASP n 1 50 SER n 1 51 TYR n 1 52 TRP n 1 53 LYS n 1 54 ASP n 1 55 LEU n 1 56 ILE n 1 57 VAL n 1 58 GLU n 1 59 GLY n 1 60 LYS n 1 61 ARG n 1 62 VAL n 1 63 THR n 1 64 THR n 1 65 VAL n 1 66 SER n 1 67 LYS n 1 68 ASP n 1 69 PRO n 1 70 LYS n 1 71 ASN n 1 72 ASN n 1 73 SER n 1 74 ARG n 1 75 THR n 1 76 LEU n 1 77 ILE n 1 78 PHE n 1 79 PRO n 1 80 TYR n 1 81 ILE n 1 82 PRO n 1 83 ASP n 1 84 LYS n 1 85 ALA n 1 86 VAL n 1 87 TYR n 1 88 ASN n 1 89 ALA n 1 90 ILE n 1 91 VAL n 1 92 LYS n 1 93 VAL n 1 94 VAL n 1 95 VAL n 1 96 ALA n 1 97 ASN n 1 98 ILE n 1 99 GLY n 1 100 TYR n 1 101 GLU n 1 102 GLY n 1 103 GLN n 1 104 TYR n 1 105 HIS n 1 106 VAL n 1 107 ARG n 1 108 ILE n 1 109 ILE n 1 110 ASN n 1 111 GLN n 1 112 ASP n 1 113 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'harA, isdH, IsdH-NEAT3, sasI, SAV1731' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'strain Mu50 / ATCC 700699' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 158878 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ISDH_STAAM _struct_ref.pdbx_db_accession Q931P4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QLTDLQEAHFVVFESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKNNSRTLIFPY IPDKAVYNAIVKVVVANIGYEGQYHVRIINQDI ; _struct_ref.pdbx_align_begin 543 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3VTM A 1 ? 113 ? Q931P4 543 ? 655 ? 543 655 2 1 3VTM B 1 ? 113 ? Q931P4 543 ? 655 ? 543 655 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3ZZ non-polymer . 'PROTOPORPHYRIN IX CONTAINING INDIUM' ? 'C34 H32 In N4 O4' 675.460 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3VTM _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 1.020 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 51.94 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details 'PEG-MME 3500, Sodium Iodide 0.2M, Potassium iodide 0.2M, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2011-10-23 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Numerical link type Si(111) double crystal monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NE3A' _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NE3A # _reflns.entry_id 3VTM _reflns.d_resolution_high 2.800 _reflns.d_resolution_low 51.822 _reflns.number_all 6932 _reflns.number_obs 6932 _reflns.pdbx_netI_over_sigmaI 8.100 _reflns.pdbx_Rsym_value 0.146 _reflns.pdbx_redundancy 4.700 _reflns.percent_possible_obs 99.500 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.800 2.950 ? 4810 ? ? 0.416 1.700 0.416 ? 4.800 ? 3.800 ? 1000 ? ? 0.467 ? 99.800 0.467 0.208 1 1 2.950 3.130 ? 4527 ? ? 0.321 2.200 0.321 ? 4.800 ? 4.600 ? 935 ? ? 0.361 ? 99.800 0.361 0.161 2 1 3.130 3.350 ? 4284 ? ? 0.236 3.000 0.236 ? 4.800 ? 6.100 ? 884 ? ? 0.265 ? 99.800 0.265 0.117 3 1 3.350 3.620 ? 3953 ? ? 0.175 4.000 0.175 ? 4.800 ? 7.700 ? 824 ? ? 0.196 ? 99.700 0.196 0.087 4 1 3.620 3.960 ? 3673 ? ? 0.138 5.000 0.138 ? 4.800 ? 9.000 ? 768 ? ? 0.155 ? 99.700 0.155 0.069 5 1 3.960 4.430 ? 3349 ? ? 0.105 6.400 0.105 ? 4.800 ? 10.600 ? 702 ? ? 0.118 ? 99.700 0.118 0.051 6 1 4.430 5.110 ? 2935 ? ? 0.080 7.700 0.080 ? 4.800 ? 12.000 ? 615 ? ? 0.089 ? 99.200 0.089 0.038 7 1 5.110 6.260 ? 2473 ? ? 0.081 7.800 0.081 ? 4.600 ? 11.600 ? 536 ? ? 0.091 ? 99.500 0.091 0.039 8 1 6.260 8.850 ? 1894 ? ? 0.059 9.600 0.059 ? 4.500 ? 12.100 ? 422 ? ? 0.067 ? 98.700 0.067 0.029 9 1 8.850 41.422 ? 1009 ? ? 0.042 8.400 0.042 ? 4.100 ? 15.000 ? 246 ? ? 0.049 ? 96.200 0.049 0.024 10 1 # _refine.entry_id 3VTM _refine.ls_d_res_high 2.8000 _refine.ls_d_res_low 51.8200 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.1400 _refine.ls_number_reflns_obs 6917 _refine.ls_number_reflns_all 6917 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all 0.2298 _refine.ls_R_factor_obs 0.2298 _refine.ls_R_factor_R_work 0.2267 _refine.ls_wR_factor_R_work 0.2039 _refine.ls_R_factor_R_free 0.2923 _refine.ls_wR_factor_R_free 0.2688 _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_number_reflns_R_free 328 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 31.5934 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.8600 _refine.aniso_B[2][2] 5.9600 _refine.aniso_B[3][3] -4.1000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9350 _refine.correlation_coeff_Fo_to_Fc_free 0.8910 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free 0.4540 _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.4540 _refine.overall_SU_ML 0.4030 _refine.overall_SU_B 20.1590 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3QUG _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7031 _refine.B_iso_max 86.730 _refine.B_iso_min 9.340 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1835 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 98 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1951 _refine_hist.d_res_high 2.8000 _refine_hist.d_res_low 51.8200 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1985 0.012 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2720 1.777 2.080 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 224 7.338 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 94 38.201 25.319 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 324 19.853 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 23.801 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 288 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1512 0.006 0.021 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.8000 _refine_ls_shell.d_res_low 2.8730 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.7700 _refine_ls_shell.number_reflns_R_work 422 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3030 _refine_ls_shell.R_factor_R_free 0.4940 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 443 _refine_ls_shell.number_reflns_obs 422 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3VTM _struct.title 'Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3VTM _struct_keywords.text ;Indium, metalloporphyrin, metal selectivity, NEAT domain, Heme binding, Heme transport, Hemin, PPIX, cell wall, HEME-BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'HEME-BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 22 ? VAL A 27 ? VAL A 564 VAL A 569 5 ? 6 HELX_P HELX_P2 2 ASP A 48 ? SER A 50 ? ASP A 590 SER A 592 5 ? 3 HELX_P HELX_P3 3 PRO A 69 ? ASN A 72 ? PRO A 611 ASN A 614 5 ? 4 HELX_P HELX_P4 4 ALA A 96 ? GLY A 99 ? ALA A 638 GLY A 641 5 ? 4 HELX_P HELX_P5 5 SER B 21 ? VAL B 27 ? SER B 563 VAL B 569 5 ? 7 HELX_P HELX_P6 6 ALA B 96 ? GLY B 99 ? ALA B 638 GLY B 641 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A TYR 100 OH ? ? ? 1_555 C 3ZZ . IN ? ? A TYR 642 A 3ZZ 701 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc2 metalc ? ? B TYR 100 OH ? ? ? 1_555 E 3ZZ . IN ? ? B TYR 642 B 3ZZ 701 1_555 ? ? ? ? ? ? ? 2.076 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 HIS 29 A . ? HIS 571 A PRO 30 A ? PRO 572 A 1 2.22 2 HIS 29 B . ? HIS 571 B PRO 30 B ? PRO 572 B 1 0.55 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 3 ? ALA A 8 ? THR A 545 ALA A 550 A 2 PHE A 31 ? LEU A 36 ? PHE A 573 LEU A 578 A 3 GLN A 39 ? LYS A 45 ? GLN A 581 LYS A 587 A 4 SER A 73 ? PRO A 79 ? SER A 615 PRO A 621 A 5 THR A 63 ? ASP A 68 ? THR A 605 ASP A 610 B 1 PHE A 10 ? GLU A 14 ? PHE A 552 GLU A 556 B 2 TYR A 100 ? ASN A 110 ? TYR A 642 ASN A 652 B 3 VAL A 86 ? VAL A 95 ? VAL A 628 VAL A 637 B 4 TRP A 52 ? VAL A 57 ? TRP A 594 VAL A 599 B 5 LYS A 60 ? ARG A 61 ? LYS A 602 ARG A 603 C 1 THR B 3 ? ALA B 8 ? THR B 545 ALA B 550 C 2 PHE B 31 ? LEU B 36 ? PHE B 573 LEU B 578 C 3 GLN B 39 ? LYS B 45 ? GLN B 581 LYS B 587 C 4 SER B 73 ? PRO B 79 ? SER B 615 PRO B 621 C 5 THR B 63 ? ASP B 68 ? THR B 605 ASP B 610 D 1 PHE B 10 ? PHE B 13 ? PHE B 552 PHE B 555 D 2 TYR B 100 ? ASN B 110 ? TYR B 642 ASN B 652 D 3 VAL B 86 ? VAL B 95 ? VAL B 628 VAL B 637 D 4 TRP B 52 ? VAL B 57 ? TRP B 594 VAL B 599 D 5 LYS B 60 ? ARG B 61 ? LYS B 602 ARG B 603 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 3 ? N THR A 545 O THR A 35 ? O THR A 577 A 2 3 N TYR A 32 ? N TYR A 574 O VAL A 43 ? O VAL A 585 A 3 4 N MET A 44 ? N MET A 586 O LEU A 76 ? O LEU A 618 A 4 5 O THR A 75 ? O THR A 617 N VAL A 65 ? N VAL A 607 B 1 2 N PHE A 13 ? N PHE A 555 O ARG A 107 ? O ARG A 649 B 2 3 O ILE A 108 ? O ILE A 650 N TYR A 87 ? N TYR A 629 B 3 4 O LYS A 92 ? O LYS A 634 N LYS A 53 ? N LYS A 595 B 4 5 N VAL A 57 ? N VAL A 599 O LYS A 60 ? O LYS A 602 C 1 2 N THR B 3 ? N THR B 545 O THR B 35 ? O THR B 577 C 2 3 N TYR B 32 ? N TYR B 574 O VAL B 43 ? O VAL B 585 C 3 4 N VAL B 42 ? N VAL B 584 O PHE B 78 ? O PHE B 620 C 4 5 O THR B 75 ? O THR B 617 N SER B 66 ? N SER B 608 D 1 2 N PHE B 13 ? N PHE B 555 O ARG B 107 ? O ARG B 649 D 2 3 O ILE B 108 ? O ILE B 650 N TYR B 87 ? N TYR B 629 D 3 4 O LYS B 92 ? O LYS B 634 N LYS B 53 ? N LYS B 595 D 4 5 N VAL B 57 ? N VAL B 599 O LYS B 60 ? O LYS B 602 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3ZZ 701 ? 11 'BINDING SITE FOR RESIDUE 3ZZ A 701' AC2 Software A GOL 702 ? 6 'BINDING SITE FOR RESIDUE GOL A 702' AC3 Software B 3ZZ 701 ? 12 'BINDING SITE FOR RESIDUE 3ZZ B 701' AC4 Software B GOL 702 ? 7 'BINDING SITE FOR RESIDUE GOL B 702' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 GLU A 14 ? GLU A 556 . ? 1_555 ? 2 AC1 11 SER A 21 ? SER A 563 . ? 1_555 ? 3 AC1 11 VAL A 22 ? VAL A 564 . ? 1_555 ? 4 AC1 11 PHE A 26 ? PHE A 568 . ? 1_555 ? 5 AC1 11 TRP A 52 ? TRP A 594 . ? 1_555 ? 6 AC1 11 VAL A 93 ? VAL A 635 . ? 1_555 ? 7 AC1 11 TYR A 100 ? TYR A 642 . ? 1_555 ? 8 AC1 11 TYR A 104 ? TYR A 646 . ? 1_555 ? 9 AC1 11 VAL A 106 ? VAL A 648 . ? 1_555 ? 10 AC1 11 VAL B 22 ? VAL B 564 . ? 1_555 ? 11 AC1 11 3ZZ E . ? 3ZZ B 701 . ? 1_555 ? 12 AC2 6 TRP A 52 ? TRP A 594 . ? 1_555 ? 13 AC2 6 ASP A 54 ? ASP A 596 . ? 1_555 ? 14 AC2 6 LEU A 55 ? LEU A 597 . ? 1_555 ? 15 AC2 6 THR A 64 ? THR A 606 . ? 1_555 ? 16 AC2 6 ARG A 74 ? ARG A 616 . ? 1_555 ? 17 AC2 6 HOH G . ? HOH A 805 . ? 1_555 ? 18 AC3 12 VAL A 22 ? VAL A 564 . ? 1_555 ? 19 AC3 12 3ZZ C . ? 3ZZ A 701 . ? 1_555 ? 20 AC3 12 SER B 21 ? SER B 563 . ? 1_555 ? 21 AC3 12 VAL B 22 ? VAL B 564 . ? 1_555 ? 22 AC3 12 PHE B 26 ? PHE B 568 . ? 1_555 ? 23 AC3 12 TYR B 51 ? TYR B 593 . ? 1_555 ? 24 AC3 12 TRP B 52 ? TRP B 594 . ? 1_555 ? 25 AC3 12 VAL B 93 ? VAL B 635 . ? 1_555 ? 26 AC3 12 ILE B 98 ? ILE B 640 . ? 1_555 ? 27 AC3 12 TYR B 100 ? TYR B 642 . ? 1_555 ? 28 AC3 12 TYR B 104 ? TYR B 646 . ? 1_555 ? 29 AC3 12 VAL B 106 ? VAL B 648 . ? 1_555 ? 30 AC4 7 ASP B 49 ? ASP B 591 . ? 1_555 ? 31 AC4 7 TRP B 52 ? TRP B 594 . ? 1_555 ? 32 AC4 7 LYS B 53 ? LYS B 595 . ? 1_555 ? 33 AC4 7 ASP B 54 ? ASP B 596 . ? 1_555 ? 34 AC4 7 LEU B 55 ? LEU B 597 . ? 1_555 ? 35 AC4 7 ARG B 74 ? ARG B 616 . ? 1_555 ? 36 AC4 7 LEU B 76 ? LEU B 618 . ? 1_555 ? # _atom_sites.entry_id 3VTM _atom_sites.fract_transf_matrix[1][1] 0.020218 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014083 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013193 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C IN N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 543 543 GLN GLN A . n A 1 2 LEU 2 544 544 LEU LEU A . n A 1 3 THR 3 545 545 THR THR A . n A 1 4 ASP 4 546 546 ASP ASP A . n A 1 5 LEU 5 547 547 LEU LEU A . n A 1 6 GLN 6 548 548 GLN GLN A . n A 1 7 GLU 7 549 549 GLU GLU A . n A 1 8 ALA 8 550 550 ALA ALA A . n A 1 9 HIS 9 551 551 HIS HIS A . n A 1 10 PHE 10 552 552 PHE PHE A . n A 1 11 VAL 11 553 553 VAL VAL A . n A 1 12 VAL 12 554 554 VAL VAL A . n A 1 13 PHE 13 555 555 PHE PHE A . n A 1 14 GLU 14 556 556 GLU GLU A . n A 1 15 SER 15 557 557 SER SER A . n A 1 16 GLU 16 558 558 GLU GLU A . n A 1 17 GLU 17 559 559 GLU GLU A . n A 1 18 ASN 18 560 560 ASN ASN A . n A 1 19 SER 19 561 561 SER SER A . n A 1 20 GLU 20 562 562 GLU GLU A . n A 1 21 SER 21 563 563 SER SER A . n A 1 22 VAL 22 564 564 VAL VAL A . n A 1 23 MET 23 565 565 MET MET A . n A 1 24 ASP 24 566 566 ASP ASP A . n A 1 25 GLY 25 567 567 GLY GLY A . n A 1 26 PHE 26 568 568 PHE PHE A . n A 1 27 VAL 27 569 569 VAL VAL A . n A 1 28 GLU 28 570 570 GLU GLU A . n A 1 29 HIS 29 571 571 HIS HIS A . n A 1 30 PRO 30 572 572 PRO PRO A . n A 1 31 PHE 31 573 573 PHE PHE A . n A 1 32 TYR 32 574 574 TYR TYR A . n A 1 33 THR 33 575 575 THR THR A . n A 1 34 ALA 34 576 576 ALA ALA A . n A 1 35 THR 35 577 577 THR THR A . n A 1 36 LEU 36 578 578 LEU LEU A . n A 1 37 ASN 37 579 579 ASN ASN A . n A 1 38 GLY 38 580 580 GLY GLY A . n A 1 39 GLN 39 581 581 GLN GLN A . n A 1 40 LYS 40 582 582 LYS LYS A . n A 1 41 TYR 41 583 583 TYR TYR A . n A 1 42 VAL 42 584 584 VAL VAL A . n A 1 43 VAL 43 585 585 VAL VAL A . n A 1 44 MET 44 586 586 MET MET A . n A 1 45 LYS 45 587 587 LYS LYS A . n A 1 46 THR 46 588 588 THR THR A . n A 1 47 LYS 47 589 589 LYS LYS A . n A 1 48 ASP 48 590 590 ASP ASP A . n A 1 49 ASP 49 591 591 ASP ASP A . n A 1 50 SER 50 592 592 SER SER A . n A 1 51 TYR 51 593 593 TYR TYR A . n A 1 52 TRP 52 594 594 TRP TRP A . n A 1 53 LYS 53 595 595 LYS LYS A . n A 1 54 ASP 54 596 596 ASP ASP A . n A 1 55 LEU 55 597 597 LEU LEU A . n A 1 56 ILE 56 598 598 ILE ILE A . n A 1 57 VAL 57 599 599 VAL VAL A . n A 1 58 GLU 58 600 600 GLU GLU A . n A 1 59 GLY 59 601 601 GLY GLY A . n A 1 60 LYS 60 602 602 LYS LYS A . n A 1 61 ARG 61 603 603 ARG ARG A . n A 1 62 VAL 62 604 604 VAL VAL A . n A 1 63 THR 63 605 605 THR THR A . n A 1 64 THR 64 606 606 THR THR A . n A 1 65 VAL 65 607 607 VAL VAL A . n A 1 66 SER 66 608 608 SER SER A . n A 1 67 LYS 67 609 609 LYS LYS A . n A 1 68 ASP 68 610 610 ASP ASP A . n A 1 69 PRO 69 611 611 PRO PRO A . n A 1 70 LYS 70 612 612 LYS LYS A . n A 1 71 ASN 71 613 613 ASN ASN A . n A 1 72 ASN 72 614 614 ASN ASN A . n A 1 73 SER 73 615 615 SER SER A . n A 1 74 ARG 74 616 616 ARG ARG A . n A 1 75 THR 75 617 617 THR THR A . n A 1 76 LEU 76 618 618 LEU LEU A . n A 1 77 ILE 77 619 619 ILE ILE A . n A 1 78 PHE 78 620 620 PHE PHE A . n A 1 79 PRO 79 621 621 PRO PRO A . n A 1 80 TYR 80 622 622 TYR TYR A . n A 1 81 ILE 81 623 623 ILE ILE A . n A 1 82 PRO 82 624 624 PRO PRO A . n A 1 83 ASP 83 625 625 ASP ASP A . n A 1 84 LYS 84 626 626 LYS LYS A . n A 1 85 ALA 85 627 627 ALA ALA A . n A 1 86 VAL 86 628 628 VAL VAL A . n A 1 87 TYR 87 629 629 TYR TYR A . n A 1 88 ASN 88 630 630 ASN ASN A . n A 1 89 ALA 89 631 631 ALA ALA A . n A 1 90 ILE 90 632 632 ILE ILE A . n A 1 91 VAL 91 633 633 VAL VAL A . n A 1 92 LYS 92 634 634 LYS LYS A . n A 1 93 VAL 93 635 635 VAL VAL A . n A 1 94 VAL 94 636 636 VAL VAL A . n A 1 95 VAL 95 637 637 VAL VAL A . n A 1 96 ALA 96 638 638 ALA ALA A . n A 1 97 ASN 97 639 639 ASN ASN A . n A 1 98 ILE 98 640 640 ILE ILE A . n A 1 99 GLY 99 641 641 GLY GLY A . n A 1 100 TYR 100 642 642 TYR TYR A . n A 1 101 GLU 101 643 643 GLU GLU A . n A 1 102 GLY 102 644 644 GLY GLY A . n A 1 103 GLN 103 645 645 GLN GLN A . n A 1 104 TYR 104 646 646 TYR TYR A . n A 1 105 HIS 105 647 647 HIS HIS A . n A 1 106 VAL 106 648 648 VAL VAL A . n A 1 107 ARG 107 649 649 ARG ARG A . n A 1 108 ILE 108 650 650 ILE ILE A . n A 1 109 ILE 109 651 651 ILE ILE A . n A 1 110 ASN 110 652 652 ASN ASN A . n A 1 111 GLN 111 653 653 GLN GLN A . n A 1 112 ASP 112 654 654 ASP ASP A . n A 1 113 ILE 113 655 655 ILE ILE A . n B 1 1 GLN 1 543 543 GLN GLN B . n B 1 2 LEU 2 544 544 LEU LEU B . n B 1 3 THR 3 545 545 THR THR B . n B 1 4 ASP 4 546 546 ASP ASP B . n B 1 5 LEU 5 547 547 LEU LEU B . n B 1 6 GLN 6 548 548 GLN GLN B . n B 1 7 GLU 7 549 549 GLU GLU B . n B 1 8 ALA 8 550 550 ALA ALA B . n B 1 9 HIS 9 551 551 HIS HIS B . n B 1 10 PHE 10 552 552 PHE PHE B . n B 1 11 VAL 11 553 553 VAL VAL B . n B 1 12 VAL 12 554 554 VAL VAL B . n B 1 13 PHE 13 555 555 PHE PHE B . n B 1 14 GLU 14 556 556 GLU GLU B . n B 1 15 SER 15 557 557 SER SER B . n B 1 16 GLU 16 558 558 GLU GLU B . n B 1 17 GLU 17 559 559 GLU GLU B . n B 1 18 ASN 18 560 560 ASN ASN B . n B 1 19 SER 19 561 561 SER SER B . n B 1 20 GLU 20 562 562 GLU GLU B . n B 1 21 SER 21 563 563 SER SER B . n B 1 22 VAL 22 564 564 VAL VAL B . n B 1 23 MET 23 565 565 MET MET B . n B 1 24 ASP 24 566 566 ASP ASP B . n B 1 25 GLY 25 567 567 GLY GLY B . n B 1 26 PHE 26 568 568 PHE PHE B . n B 1 27 VAL 27 569 569 VAL VAL B . n B 1 28 GLU 28 570 570 GLU GLU B . n B 1 29 HIS 29 571 571 HIS HIS B . n B 1 30 PRO 30 572 572 PRO PRO B . n B 1 31 PHE 31 573 573 PHE PHE B . n B 1 32 TYR 32 574 574 TYR TYR B . n B 1 33 THR 33 575 575 THR THR B . n B 1 34 ALA 34 576 576 ALA ALA B . n B 1 35 THR 35 577 577 THR THR B . n B 1 36 LEU 36 578 578 LEU LEU B . n B 1 37 ASN 37 579 579 ASN ASN B . n B 1 38 GLY 38 580 580 GLY GLY B . n B 1 39 GLN 39 581 581 GLN GLN B . n B 1 40 LYS 40 582 582 LYS LYS B . n B 1 41 TYR 41 583 583 TYR TYR B . n B 1 42 VAL 42 584 584 VAL VAL B . n B 1 43 VAL 43 585 585 VAL VAL B . n B 1 44 MET 44 586 586 MET MET B . n B 1 45 LYS 45 587 587 LYS LYS B . n B 1 46 THR 46 588 588 THR THR B . n B 1 47 LYS 47 589 589 LYS LYS B . n B 1 48 ASP 48 590 590 ASP ASP B . n B 1 49 ASP 49 591 591 ASP ASP B . n B 1 50 SER 50 592 592 SER SER B . n B 1 51 TYR 51 593 593 TYR TYR B . n B 1 52 TRP 52 594 594 TRP TRP B . n B 1 53 LYS 53 595 595 LYS LYS B . n B 1 54 ASP 54 596 596 ASP ASP B . n B 1 55 LEU 55 597 597 LEU LEU B . n B 1 56 ILE 56 598 598 ILE ILE B . n B 1 57 VAL 57 599 599 VAL VAL B . n B 1 58 GLU 58 600 600 GLU GLU B . n B 1 59 GLY 59 601 601 GLY GLY B . n B 1 60 LYS 60 602 602 LYS LYS B . n B 1 61 ARG 61 603 603 ARG ARG B . n B 1 62 VAL 62 604 604 VAL VAL B . n B 1 63 THR 63 605 605 THR THR B . n B 1 64 THR 64 606 606 THR THR B . n B 1 65 VAL 65 607 607 VAL VAL B . n B 1 66 SER 66 608 608 SER SER B . n B 1 67 LYS 67 609 609 LYS LYS B . n B 1 68 ASP 68 610 610 ASP ASP B . n B 1 69 PRO 69 611 611 PRO PRO B . n B 1 70 LYS 70 612 612 LYS LYS B . n B 1 71 ASN 71 613 613 ASN ASN B . n B 1 72 ASN 72 614 614 ASN ASN B . n B 1 73 SER 73 615 615 SER SER B . n B 1 74 ARG 74 616 616 ARG ARG B . n B 1 75 THR 75 617 617 THR THR B . n B 1 76 LEU 76 618 618 LEU LEU B . n B 1 77 ILE 77 619 619 ILE ILE B . n B 1 78 PHE 78 620 620 PHE PHE B . n B 1 79 PRO 79 621 621 PRO PRO B . n B 1 80 TYR 80 622 622 TYR TYR B . n B 1 81 ILE 81 623 623 ILE ILE B . n B 1 82 PRO 82 624 624 PRO PRO B . n B 1 83 ASP 83 625 625 ASP ASP B . n B 1 84 LYS 84 626 626 LYS LYS B . n B 1 85 ALA 85 627 627 ALA ALA B . n B 1 86 VAL 86 628 628 VAL VAL B . n B 1 87 TYR 87 629 629 TYR TYR B . n B 1 88 ASN 88 630 630 ASN ASN B . n B 1 89 ALA 89 631 631 ALA ALA B . n B 1 90 ILE 90 632 632 ILE ILE B . n B 1 91 VAL 91 633 633 VAL VAL B . n B 1 92 LYS 92 634 634 LYS LYS B . n B 1 93 VAL 93 635 635 VAL VAL B . n B 1 94 VAL 94 636 636 VAL VAL B . n B 1 95 VAL 95 637 637 VAL VAL B . n B 1 96 ALA 96 638 638 ALA ALA B . n B 1 97 ASN 97 639 639 ASN ASN B . n B 1 98 ILE 98 640 640 ILE ILE B . n B 1 99 GLY 99 641 641 GLY GLY B . n B 1 100 TYR 100 642 642 TYR TYR B . n B 1 101 GLU 101 643 643 GLU GLU B . n B 1 102 GLY 102 644 644 GLY GLY B . n B 1 103 GLN 103 645 645 GLN GLN B . n B 1 104 TYR 104 646 646 TYR TYR B . n B 1 105 HIS 105 647 647 HIS HIS B . n B 1 106 VAL 106 648 648 VAL VAL B . n B 1 107 ARG 107 649 649 ARG ARG B . n B 1 108 ILE 108 650 650 ILE ILE B . n B 1 109 ILE 109 651 651 ILE ILE B . n B 1 110 ASN 110 652 652 ASN ASN B . n B 1 111 GLN 111 653 653 GLN GLN B . n B 1 112 ASP 112 654 654 ASP ASP B . n B 1 113 ILE 113 655 655 ILE ILE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3ZZ 1 701 700 3ZZ ZZZ A . D 3 GOL 1 702 11 GOL GOL A . E 2 3ZZ 1 701 700 3ZZ ZZZ B . F 3 GOL 1 702 12 GOL GOL B . G 4 HOH 1 801 1 HOH HOH A . G 4 HOH 2 802 2 HOH HOH A . G 4 HOH 3 803 4 HOH HOH A . G 4 HOH 4 804 5 HOH HOH A . G 4 HOH 5 805 10 HOH HOH A . G 4 HOH 6 806 11 HOH HOH A . G 4 HOH 7 807 12 HOH HOH A . G 4 HOH 8 808 13 HOH HOH A . G 4 HOH 9 809 15 HOH HOH A . H 4 HOH 1 801 3 HOH HOH B . H 4 HOH 2 802 6 HOH HOH B . H 4 HOH 3 803 7 HOH HOH B . H 4 HOH 4 804 8 HOH HOH B . H 4 HOH 5 805 9 HOH HOH B . H 4 HOH 6 806 14 HOH HOH B . H 4 HOH 7 807 16 HOH HOH B . H 4 HOH 8 808 17 HOH HOH B . H 4 HOH 9 809 18 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G 2 1 B,E,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OH ? A TYR 100 ? A TYR 642 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 NB ? C 3ZZ . ? A 3ZZ 701 ? 1_555 86.0 ? 2 OH ? A TYR 100 ? A TYR 642 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 NA ? C 3ZZ . ? A 3ZZ 701 ? 1_555 93.7 ? 3 NB ? C 3ZZ . ? A 3ZZ 701 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 NA ? C 3ZZ . ? A 3ZZ 701 ? 1_555 90.9 ? 4 OH ? A TYR 100 ? A TYR 642 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 ND ? C 3ZZ . ? A 3ZZ 701 ? 1_555 96.9 ? 5 NB ? C 3ZZ . ? A 3ZZ 701 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 ND ? C 3ZZ . ? A 3ZZ 701 ? 1_555 175.9 ? 6 NA ? C 3ZZ . ? A 3ZZ 701 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 ND ? C 3ZZ . ? A 3ZZ 701 ? 1_555 91.8 ? 7 OH ? A TYR 100 ? A TYR 642 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 NC ? C 3ZZ . ? A 3ZZ 701 ? 1_555 89.8 ? 8 NB ? C 3ZZ . ? A 3ZZ 701 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 NC ? C 3ZZ . ? A 3ZZ 701 ? 1_555 89.5 ? 9 NA ? C 3ZZ . ? A 3ZZ 701 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 NC ? C 3ZZ . ? A 3ZZ 701 ? 1_555 176.6 ? 10 ND ? C 3ZZ . ? A 3ZZ 701 ? 1_555 IN ? C 3ZZ . ? A 3ZZ 701 ? 1_555 NC ? C 3ZZ . ? A 3ZZ 701 ? 1_555 87.6 ? 11 OH ? B TYR 100 ? B TYR 642 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 NB ? E 3ZZ . ? B 3ZZ 701 ? 1_555 92.0 ? 12 OH ? B TYR 100 ? B TYR 642 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 NA ? E 3ZZ . ? B 3ZZ 701 ? 1_555 93.5 ? 13 NB ? E 3ZZ . ? B 3ZZ 701 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 NA ? E 3ZZ . ? B 3ZZ 701 ? 1_555 95.1 ? 14 OH ? B TYR 100 ? B TYR 642 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 ND ? E 3ZZ . ? B 3ZZ 701 ? 1_555 91.0 ? 15 NB ? E 3ZZ . ? B 3ZZ 701 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 ND ? E 3ZZ . ? B 3ZZ 701 ? 1_555 177.1 ? 16 NA ? E 3ZZ . ? B 3ZZ 701 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 ND ? E 3ZZ . ? B 3ZZ 701 ? 1_555 84.8 ? 17 OH ? B TYR 100 ? B TYR 642 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 NC ? E 3ZZ . ? B 3ZZ 701 ? 1_555 88.8 ? 18 NB ? E 3ZZ . ? B 3ZZ 701 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 NC ? E 3ZZ . ? B 3ZZ 701 ? 1_555 85.6 ? 19 NA ? E 3ZZ . ? B 3ZZ 701 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 NC ? E 3ZZ . ? B 3ZZ 701 ? 1_555 177.5 ? 20 ND ? E 3ZZ . ? B 3ZZ 701 ? 1_555 IN ? E 3ZZ . ? B 3ZZ 701 ? 1_555 NC ? E 3ZZ . ? B 3ZZ 701 ? 1_555 94.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-15 2 'Structure model' 1 1 2013-08-21 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3VTM _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.800 _pdbx_phasing_MR.d_res_low_rotation 41.420 _pdbx_phasing_MR.d_res_high_translation 2.800 _pdbx_phasing_MR.d_res_low_translation 41.420 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER 2.3.0 'Mon Jun 27 09:33:44 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 SERGUI . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 546 ? ? 65.31 60.64 2 1 GLU A 558 ? ? -103.97 -69.42 3 1 ASN A 560 ? ? -72.82 49.11 4 1 GLU A 600 ? ? 31.48 58.48 5 1 ASP A 625 ? ? 73.81 -12.15 6 1 GLU B 558 ? ? -109.44 -69.24 7 1 GLU B 600 ? ? 44.19 19.37 8 1 ASP B 610 ? ? -155.41 87.57 9 1 ASP B 625 ? ? 63.79 -2.03 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3ZZ CHA C N N 1 3ZZ C1A C N N 2 3ZZ C2A C N N 3 3ZZ CAA C N N 4 3ZZ CBA C N N 5 3ZZ CGA C N N 6 3ZZ O1A O N N 7 3ZZ O2A O N N 8 3ZZ C3A C N N 9 3ZZ CMA C N N 10 3ZZ C4A C N N 11 3ZZ NA N N N 12 3ZZ CHB C N N 13 3ZZ C1B C Y N 14 3ZZ C2B C Y N 15 3ZZ CMB C N N 16 3ZZ C3B C Y N 17 3ZZ CAB C N N 18 3ZZ CBB C N N 19 3ZZ C4B C Y N 20 3ZZ NB N Y N 21 3ZZ CHC C N N 22 3ZZ C1C C N N 23 3ZZ C2C C N N 24 3ZZ CMC C N N 25 3ZZ C3C C N N 26 3ZZ CAC C N N 27 3ZZ CBC C N N 28 3ZZ C4C C N N 29 3ZZ NC N N N 30 3ZZ CHD C N N 31 3ZZ C1D C Y N 32 3ZZ C2D C Y N 33 3ZZ CMD C N N 34 3ZZ C3D C Y N 35 3ZZ CAD C N N 36 3ZZ CBD C N N 37 3ZZ CGD C N N 38 3ZZ O1D O N N 39 3ZZ O2D O N N 40 3ZZ C4D C Y N 41 3ZZ ND N Y N 42 3ZZ IN IN N N 43 3ZZ H1 H N N 44 3ZZ H2 H N N 45 3ZZ H3 H N N 46 3ZZ H4 H N N 47 3ZZ H5 H N N 48 3ZZ H6 H N N 49 3ZZ H7 H N N 50 3ZZ H8 H N N 51 3ZZ H9 H N N 52 3ZZ H10 H N N 53 3ZZ H11 H N N 54 3ZZ H12 H N N 55 3ZZ H13 H N N 56 3ZZ H14 H N N 57 3ZZ H15 H N N 58 3ZZ H16 H N N 59 3ZZ H17 H N N 60 3ZZ H18 H N N 61 3ZZ H19 H N N 62 3ZZ H20 H N N 63 3ZZ H21 H N N 64 3ZZ H22 H N N 65 3ZZ H23 H N N 66 3ZZ H24 H N N 67 3ZZ H25 H N N 68 3ZZ H26 H N N 69 3ZZ H27 H N N 70 3ZZ H28 H N N 71 3ZZ H29 H N N 72 3ZZ H30 H N N 73 3ZZ H31 H N N 74 3ZZ H32 H N N 75 ALA N N N N 76 ALA CA C N S 77 ALA C C N N 78 ALA O O N N 79 ALA CB C N N 80 ALA OXT O N N 81 ALA H H N N 82 ALA H2 H N N 83 ALA HA H N N 84 ALA HB1 H N N 85 ALA HB2 H N N 86 ALA HB3 H N N 87 ALA HXT H N N 88 ARG N N N N 89 ARG CA C N S 90 ARG C C N N 91 ARG O O N N 92 ARG CB C N N 93 ARG CG C N N 94 ARG CD C N N 95 ARG NE N N N 96 ARG CZ C N N 97 ARG NH1 N N N 98 ARG NH2 N N N 99 ARG OXT O N N 100 ARG H H N N 101 ARG H2 H N N 102 ARG HA H N N 103 ARG HB2 H N N 104 ARG HB3 H N N 105 ARG HG2 H N N 106 ARG HG3 H N N 107 ARG HD2 H N N 108 ARG HD3 H N N 109 ARG HE H N N 110 ARG HH11 H N N 111 ARG HH12 H N N 112 ARG HH21 H N N 113 ARG HH22 H N N 114 ARG HXT H N N 115 ASN N N N N 116 ASN CA C N S 117 ASN C C N N 118 ASN O O N N 119 ASN CB C N N 120 ASN CG C N N 121 ASN OD1 O N N 122 ASN ND2 N N N 123 ASN OXT O N N 124 ASN H H N N 125 ASN H2 H N N 126 ASN HA H N N 127 ASN HB2 H N N 128 ASN HB3 H N N 129 ASN HD21 H N N 130 ASN HD22 H N N 131 ASN HXT H N N 132 ASP N N N N 133 ASP CA C N S 134 ASP C C N N 135 ASP O O N N 136 ASP CB C N N 137 ASP CG C N N 138 ASP OD1 O N N 139 ASP OD2 O N N 140 ASP OXT O N N 141 ASP H H N N 142 ASP H2 H N N 143 ASP HA H N N 144 ASP HB2 H N N 145 ASP HB3 H N N 146 ASP HD2 H N N 147 ASP HXT H N N 148 GLN N N N N 149 GLN CA C N S 150 GLN C C N N 151 GLN O O N N 152 GLN CB C N N 153 GLN CG C N N 154 GLN CD C N N 155 GLN OE1 O N N 156 GLN NE2 N N N 157 GLN OXT O N N 158 GLN H H N N 159 GLN H2 H N N 160 GLN HA H N N 161 GLN HB2 H N N 162 GLN HB3 H N N 163 GLN HG2 H N N 164 GLN HG3 H N N 165 GLN HE21 H N N 166 GLN HE22 H N N 167 GLN HXT H N N 168 GLU N N N N 169 GLU CA C N S 170 GLU C C N N 171 GLU O O N N 172 GLU CB C N N 173 GLU CG C N N 174 GLU CD C N N 175 GLU OE1 O N N 176 GLU OE2 O N N 177 GLU OXT O N N 178 GLU H H N N 179 GLU H2 H N N 180 GLU HA H N N 181 GLU HB2 H N N 182 GLU HB3 H N N 183 GLU HG2 H N N 184 GLU HG3 H N N 185 GLU HE2 H N N 186 GLU HXT H N N 187 GLY N N N N 188 GLY CA C N N 189 GLY C C N N 190 GLY O O N N 191 GLY OXT O N N 192 GLY H H N N 193 GLY H2 H N N 194 GLY HA2 H N N 195 GLY HA3 H N N 196 GLY HXT H N N 197 GOL C1 C N N 198 GOL O1 O N N 199 GOL C2 C N N 200 GOL O2 O N N 201 GOL C3 C N N 202 GOL O3 O N N 203 GOL H11 H N N 204 GOL H12 H N N 205 GOL HO1 H N N 206 GOL H2 H N N 207 GOL HO2 H N N 208 GOL H31 H N N 209 GOL H32 H N N 210 GOL HO3 H N N 211 HIS N N N N 212 HIS CA C N S 213 HIS C C N N 214 HIS O O N N 215 HIS CB C N N 216 HIS CG C Y N 217 HIS ND1 N Y N 218 HIS CD2 C Y N 219 HIS CE1 C Y N 220 HIS NE2 N Y N 221 HIS OXT O N N 222 HIS H H N N 223 HIS H2 H N N 224 HIS HA H N N 225 HIS HB2 H N N 226 HIS HB3 H N N 227 HIS HD1 H N N 228 HIS HD2 H N N 229 HIS HE1 H N N 230 HIS HE2 H N N 231 HIS HXT H N N 232 HOH O O N N 233 HOH H1 H N N 234 HOH H2 H N N 235 ILE N N N N 236 ILE CA C N S 237 ILE C C N N 238 ILE O O N N 239 ILE CB C N S 240 ILE CG1 C N N 241 ILE CG2 C N N 242 ILE CD1 C N N 243 ILE OXT O N N 244 ILE H H N N 245 ILE H2 H N N 246 ILE HA H N N 247 ILE HB H N N 248 ILE HG12 H N N 249 ILE HG13 H N N 250 ILE HG21 H N N 251 ILE HG22 H N N 252 ILE HG23 H N N 253 ILE HD11 H N N 254 ILE HD12 H N N 255 ILE HD13 H N N 256 ILE HXT H N N 257 LEU N N N N 258 LEU CA C N S 259 LEU C C N N 260 LEU O O N N 261 LEU CB C N N 262 LEU CG C N N 263 LEU CD1 C N N 264 LEU CD2 C N N 265 LEU OXT O N N 266 LEU H H N N 267 LEU H2 H N N 268 LEU HA H N N 269 LEU HB2 H N N 270 LEU HB3 H N N 271 LEU HG H N N 272 LEU HD11 H N N 273 LEU HD12 H N N 274 LEU HD13 H N N 275 LEU HD21 H N N 276 LEU HD22 H N N 277 LEU HD23 H N N 278 LEU HXT H N N 279 LYS N N N N 280 LYS CA C N S 281 LYS C C N N 282 LYS O O N N 283 LYS CB C N N 284 LYS CG C N N 285 LYS CD C N N 286 LYS CE C N N 287 LYS NZ N N N 288 LYS OXT O N N 289 LYS H H N N 290 LYS H2 H N N 291 LYS HA H N N 292 LYS HB2 H N N 293 LYS HB3 H N N 294 LYS HG2 H N N 295 LYS HG3 H N N 296 LYS HD2 H N N 297 LYS HD3 H N N 298 LYS HE2 H N N 299 LYS HE3 H N N 300 LYS HZ1 H N N 301 LYS HZ2 H N N 302 LYS HZ3 H N N 303 LYS HXT H N N 304 MET N N N N 305 MET CA C N S 306 MET C C N N 307 MET O O N N 308 MET CB C N N 309 MET CG C N N 310 MET SD S N N 311 MET CE C N N 312 MET OXT O N N 313 MET H H N N 314 MET H2 H N N 315 MET HA H N N 316 MET HB2 H N N 317 MET HB3 H N N 318 MET HG2 H N N 319 MET HG3 H N N 320 MET HE1 H N N 321 MET HE2 H N N 322 MET HE3 H N N 323 MET HXT H N N 324 PHE N N N N 325 PHE CA C N S 326 PHE C C N N 327 PHE O O N N 328 PHE CB C N N 329 PHE CG C Y N 330 PHE CD1 C Y N 331 PHE CD2 C Y N 332 PHE CE1 C Y N 333 PHE CE2 C Y N 334 PHE CZ C Y N 335 PHE OXT O N N 336 PHE H H N N 337 PHE H2 H N N 338 PHE HA H N N 339 PHE HB2 H N N 340 PHE HB3 H N N 341 PHE HD1 H N N 342 PHE HD2 H N N 343 PHE HE1 H N N 344 PHE HE2 H N N 345 PHE HZ H N N 346 PHE HXT H N N 347 PRO N N N N 348 PRO CA C N S 349 PRO C C N N 350 PRO O O N N 351 PRO CB C N N 352 PRO CG C N N 353 PRO CD C N N 354 PRO OXT O N N 355 PRO H H N N 356 PRO HA H N N 357 PRO HB2 H N N 358 PRO HB3 H N N 359 PRO HG2 H N N 360 PRO HG3 H N N 361 PRO HD2 H N N 362 PRO HD3 H N N 363 PRO HXT H N N 364 SER N N N N 365 SER CA C N S 366 SER C C N N 367 SER O O N N 368 SER CB C N N 369 SER OG O N N 370 SER OXT O N N 371 SER H H N N 372 SER H2 H N N 373 SER HA H N N 374 SER HB2 H N N 375 SER HB3 H N N 376 SER HG H N N 377 SER HXT H N N 378 THR N N N N 379 THR CA C N S 380 THR C C N N 381 THR O O N N 382 THR CB C N R 383 THR OG1 O N N 384 THR CG2 C N N 385 THR OXT O N N 386 THR H H N N 387 THR H2 H N N 388 THR HA H N N 389 THR HB H N N 390 THR HG1 H N N 391 THR HG21 H N N 392 THR HG22 H N N 393 THR HG23 H N N 394 THR HXT H N N 395 TRP N N N N 396 TRP CA C N S 397 TRP C C N N 398 TRP O O N N 399 TRP CB C N N 400 TRP CG C Y N 401 TRP CD1 C Y N 402 TRP CD2 C Y N 403 TRP NE1 N Y N 404 TRP CE2 C Y N 405 TRP CE3 C Y N 406 TRP CZ2 C Y N 407 TRP CZ3 C Y N 408 TRP CH2 C Y N 409 TRP OXT O N N 410 TRP H H N N 411 TRP H2 H N N 412 TRP HA H N N 413 TRP HB2 H N N 414 TRP HB3 H N N 415 TRP HD1 H N N 416 TRP HE1 H N N 417 TRP HE3 H N N 418 TRP HZ2 H N N 419 TRP HZ3 H N N 420 TRP HH2 H N N 421 TRP HXT H N N 422 TYR N N N N 423 TYR CA C N S 424 TYR C C N N 425 TYR O O N N 426 TYR CB C N N 427 TYR CG C Y N 428 TYR CD1 C Y N 429 TYR CD2 C Y N 430 TYR CE1 C Y N 431 TYR CE2 C Y N 432 TYR CZ C Y N 433 TYR OH O N N 434 TYR OXT O N N 435 TYR H H N N 436 TYR H2 H N N 437 TYR HA H N N 438 TYR HB2 H N N 439 TYR HB3 H N N 440 TYR HD1 H N N 441 TYR HD2 H N N 442 TYR HE1 H N N 443 TYR HE2 H N N 444 TYR HH H N N 445 TYR HXT H N N 446 VAL N N N N 447 VAL CA C N S 448 VAL C C N N 449 VAL O O N N 450 VAL CB C N N 451 VAL CG1 C N N 452 VAL CG2 C N N 453 VAL OXT O N N 454 VAL H H N N 455 VAL H2 H N N 456 VAL HA H N N 457 VAL HB H N N 458 VAL HG11 H N N 459 VAL HG12 H N N 460 VAL HG13 H N N 461 VAL HG21 H N N 462 VAL HG22 H N N 463 VAL HG23 H N N 464 VAL HXT H N N 465 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3ZZ CMB C2B sing N N 1 3ZZ CMA C3A sing N N 2 3ZZ O1A CGA doub N N 3 3ZZ CBB CAB doub N N 4 3ZZ C2B C1B doub Y N 5 3ZZ C2B C3B sing Y N 6 3ZZ CHB C1B sing N N 7 3ZZ CHB C4A doub N N 8 3ZZ C3A C4A sing N N 9 3ZZ C3A C2A doub N N 10 3ZZ CGA O2A sing N N 11 3ZZ CGA CBA sing N N 12 3ZZ C1B NB sing Y N 13 3ZZ C4A NA sing N N 14 3ZZ C3B CAB sing N N 15 3ZZ C3B C4B doub Y N 16 3ZZ CAA C2A sing N N 17 3ZZ CAA CBA sing N N 18 3ZZ C2A C1A sing N N 19 3ZZ NB C4B sing Y N 20 3ZZ NB IN sing N N 21 3ZZ C4B CHC sing N N 22 3ZZ NA C1A doub N N 23 3ZZ NA IN sing N N 24 3ZZ C1A CHA sing N N 25 3ZZ CHC C1C doub N Z 26 3ZZ IN ND sing N N 27 3ZZ CHA C4D doub N N 28 3ZZ C1C NC sing N N 29 3ZZ C1C C2C sing N N 30 3ZZ NC C4C sing N N 31 3ZZ C4D ND sing Y N 32 3ZZ C4D C3D sing Y N 33 3ZZ ND C1D sing Y N 34 3ZZ C2C CMC sing N N 35 3ZZ C2C C3C doub N N 36 3ZZ C4C C3C sing N N 37 3ZZ C4C CHD sing N N 38 3ZZ C3D CAD sing N N 39 3ZZ C3D C2D doub Y N 40 3ZZ C1D CHD doub N Z 41 3ZZ C1D C2D sing Y N 42 3ZZ CAD CBD sing N N 43 3ZZ C3C CAC sing N N 44 3ZZ CBD CGD sing N N 45 3ZZ C2D CMD sing N N 46 3ZZ O2D CGD doub N N 47 3ZZ CGD O1D sing N N 48 3ZZ CAC CBC doub N N 49 3ZZ CHA H1 sing N N 50 3ZZ CAA H2 sing N N 51 3ZZ CAA H3 sing N N 52 3ZZ CBA H4 sing N N 53 3ZZ CBA H5 sing N N 54 3ZZ O2A H6 sing N N 55 3ZZ CMA H7 sing N N 56 3ZZ CMA H8 sing N N 57 3ZZ CMA H9 sing N N 58 3ZZ CHB H10 sing N N 59 3ZZ CMB H11 sing N N 60 3ZZ CMB H12 sing N N 61 3ZZ CMB H13 sing N N 62 3ZZ CAB H14 sing N N 63 3ZZ CBB H15 sing N N 64 3ZZ CBB H16 sing N N 65 3ZZ CHC H17 sing N N 66 3ZZ CMC H18 sing N N 67 3ZZ CMC H19 sing N N 68 3ZZ CMC H20 sing N N 69 3ZZ CAC H21 sing N N 70 3ZZ CBC H22 sing N N 71 3ZZ CBC H23 sing N N 72 3ZZ CHD H24 sing N N 73 3ZZ CMD H25 sing N N 74 3ZZ CMD H26 sing N N 75 3ZZ CMD H27 sing N N 76 3ZZ CAD H28 sing N N 77 3ZZ CAD H29 sing N N 78 3ZZ CBD H30 sing N N 79 3ZZ CBD H31 sing N N 80 3ZZ O1D H32 sing N N 81 3ZZ IN NC sing N N 82 ALA N CA sing N N 83 ALA N H sing N N 84 ALA N H2 sing N N 85 ALA CA C sing N N 86 ALA CA CB sing N N 87 ALA CA HA sing N N 88 ALA C O doub N N 89 ALA C OXT sing N N 90 ALA CB HB1 sing N N 91 ALA CB HB2 sing N N 92 ALA CB HB3 sing N N 93 ALA OXT HXT sing N N 94 ARG N CA sing N N 95 ARG N H sing N N 96 ARG N H2 sing N N 97 ARG CA C sing N N 98 ARG CA CB sing N N 99 ARG CA HA sing N N 100 ARG C O doub N N 101 ARG C OXT sing N N 102 ARG CB CG sing N N 103 ARG CB HB2 sing N N 104 ARG CB HB3 sing N N 105 ARG CG CD sing N N 106 ARG CG HG2 sing N N 107 ARG CG HG3 sing N N 108 ARG CD NE sing N N 109 ARG CD HD2 sing N N 110 ARG CD HD3 sing N N 111 ARG NE CZ sing N N 112 ARG NE HE sing N N 113 ARG CZ NH1 sing N N 114 ARG CZ NH2 doub N N 115 ARG NH1 HH11 sing N N 116 ARG NH1 HH12 sing N N 117 ARG NH2 HH21 sing N N 118 ARG NH2 HH22 sing N N 119 ARG OXT HXT sing N N 120 ASN N CA sing N N 121 ASN N H sing N N 122 ASN N H2 sing N N 123 ASN CA C sing N N 124 ASN CA CB sing N N 125 ASN CA HA sing N N 126 ASN C O doub N N 127 ASN C OXT sing N N 128 ASN CB CG sing N N 129 ASN CB HB2 sing N N 130 ASN CB HB3 sing N N 131 ASN CG OD1 doub N N 132 ASN CG ND2 sing N N 133 ASN ND2 HD21 sing N N 134 ASN ND2 HD22 sing N N 135 ASN OXT HXT sing N N 136 ASP N CA sing N N 137 ASP N H sing N N 138 ASP N H2 sing N N 139 ASP CA C sing N N 140 ASP CA CB sing N N 141 ASP CA HA sing N N 142 ASP C O doub N N 143 ASP C OXT sing N N 144 ASP CB CG sing N N 145 ASP CB HB2 sing N N 146 ASP CB HB3 sing N N 147 ASP CG OD1 doub N N 148 ASP CG OD2 sing N N 149 ASP OD2 HD2 sing N N 150 ASP OXT HXT sing N N 151 GLN N CA sing N N 152 GLN N H sing N N 153 GLN N H2 sing N N 154 GLN CA C sing N N 155 GLN CA CB sing N N 156 GLN CA HA sing N N 157 GLN C O doub N N 158 GLN C OXT sing N N 159 GLN CB CG sing N N 160 GLN CB HB2 sing N N 161 GLN CB HB3 sing N N 162 GLN CG CD sing N N 163 GLN CG HG2 sing N N 164 GLN CG HG3 sing N N 165 GLN CD OE1 doub N N 166 GLN CD NE2 sing N N 167 GLN NE2 HE21 sing N N 168 GLN NE2 HE22 sing N N 169 GLN OXT HXT sing N N 170 GLU N CA sing N N 171 GLU N H sing N N 172 GLU N H2 sing N N 173 GLU CA C sing N N 174 GLU CA CB sing N N 175 GLU CA HA sing N N 176 GLU C O doub N N 177 GLU C OXT sing N N 178 GLU CB CG sing N N 179 GLU CB HB2 sing N N 180 GLU CB HB3 sing N N 181 GLU CG CD sing N N 182 GLU CG HG2 sing N N 183 GLU CG HG3 sing N N 184 GLU CD OE1 doub N N 185 GLU CD OE2 sing N N 186 GLU OE2 HE2 sing N N 187 GLU OXT HXT sing N N 188 GLY N CA sing N N 189 GLY N H sing N N 190 GLY N H2 sing N N 191 GLY CA C sing N N 192 GLY CA HA2 sing N N 193 GLY CA HA3 sing N N 194 GLY C O doub N N 195 GLY C OXT sing N N 196 GLY OXT HXT sing N N 197 GOL C1 O1 sing N N 198 GOL C1 C2 sing N N 199 GOL C1 H11 sing N N 200 GOL C1 H12 sing N N 201 GOL O1 HO1 sing N N 202 GOL C2 O2 sing N N 203 GOL C2 C3 sing N N 204 GOL C2 H2 sing N N 205 GOL O2 HO2 sing N N 206 GOL C3 O3 sing N N 207 GOL C3 H31 sing N N 208 GOL C3 H32 sing N N 209 GOL O3 HO3 sing N N 210 HIS N CA sing N N 211 HIS N H sing N N 212 HIS N H2 sing N N 213 HIS CA C sing N N 214 HIS CA CB sing N N 215 HIS CA HA sing N N 216 HIS C O doub N N 217 HIS C OXT sing N N 218 HIS CB CG sing N N 219 HIS CB HB2 sing N N 220 HIS CB HB3 sing N N 221 HIS CG ND1 sing Y N 222 HIS CG CD2 doub Y N 223 HIS ND1 CE1 doub Y N 224 HIS ND1 HD1 sing N N 225 HIS CD2 NE2 sing Y N 226 HIS CD2 HD2 sing N N 227 HIS CE1 NE2 sing Y N 228 HIS CE1 HE1 sing N N 229 HIS NE2 HE2 sing N N 230 HIS OXT HXT sing N N 231 HOH O H1 sing N N 232 HOH O H2 sing N N 233 ILE N CA sing N N 234 ILE N H sing N N 235 ILE N H2 sing N N 236 ILE CA C sing N N 237 ILE CA CB sing N N 238 ILE CA HA sing N N 239 ILE C O doub N N 240 ILE C OXT sing N N 241 ILE CB CG1 sing N N 242 ILE CB CG2 sing N N 243 ILE CB HB sing N N 244 ILE CG1 CD1 sing N N 245 ILE CG1 HG12 sing N N 246 ILE CG1 HG13 sing N N 247 ILE CG2 HG21 sing N N 248 ILE CG2 HG22 sing N N 249 ILE CG2 HG23 sing N N 250 ILE CD1 HD11 sing N N 251 ILE CD1 HD12 sing N N 252 ILE CD1 HD13 sing N N 253 ILE OXT HXT sing N N 254 LEU N CA sing N N 255 LEU N H sing N N 256 LEU N H2 sing N N 257 LEU CA C sing N N 258 LEU CA CB sing N N 259 LEU CA HA sing N N 260 LEU C O doub N N 261 LEU C OXT sing N N 262 LEU CB CG sing N N 263 LEU CB HB2 sing N N 264 LEU CB HB3 sing N N 265 LEU CG CD1 sing N N 266 LEU CG CD2 sing N N 267 LEU CG HG sing N N 268 LEU CD1 HD11 sing N N 269 LEU CD1 HD12 sing N N 270 LEU CD1 HD13 sing N N 271 LEU CD2 HD21 sing N N 272 LEU CD2 HD22 sing N N 273 LEU CD2 HD23 sing N N 274 LEU OXT HXT sing N N 275 LYS N CA sing N N 276 LYS N H sing N N 277 LYS N H2 sing N N 278 LYS CA C sing N N 279 LYS CA CB sing N N 280 LYS CA HA sing N N 281 LYS C O doub N N 282 LYS C OXT sing N N 283 LYS CB CG sing N N 284 LYS CB HB2 sing N N 285 LYS CB HB3 sing N N 286 LYS CG CD sing N N 287 LYS CG HG2 sing N N 288 LYS CG HG3 sing N N 289 LYS CD CE sing N N 290 LYS CD HD2 sing N N 291 LYS CD HD3 sing N N 292 LYS CE NZ sing N N 293 LYS CE HE2 sing N N 294 LYS CE HE3 sing N N 295 LYS NZ HZ1 sing N N 296 LYS NZ HZ2 sing N N 297 LYS NZ HZ3 sing N N 298 LYS OXT HXT sing N N 299 MET N CA sing N N 300 MET N H sing N N 301 MET N H2 sing N N 302 MET CA C sing N N 303 MET CA CB sing N N 304 MET CA HA sing N N 305 MET C O doub N N 306 MET C OXT sing N N 307 MET CB CG sing N N 308 MET CB HB2 sing N N 309 MET CB HB3 sing N N 310 MET CG SD sing N N 311 MET CG HG2 sing N N 312 MET CG HG3 sing N N 313 MET SD CE sing N N 314 MET CE HE1 sing N N 315 MET CE HE2 sing N N 316 MET CE HE3 sing N N 317 MET OXT HXT sing N N 318 PHE N CA sing N N 319 PHE N H sing N N 320 PHE N H2 sing N N 321 PHE CA C sing N N 322 PHE CA CB sing N N 323 PHE CA HA sing N N 324 PHE C O doub N N 325 PHE C OXT sing N N 326 PHE CB CG sing N N 327 PHE CB HB2 sing N N 328 PHE CB HB3 sing N N 329 PHE CG CD1 doub Y N 330 PHE CG CD2 sing Y N 331 PHE CD1 CE1 sing Y N 332 PHE CD1 HD1 sing N N 333 PHE CD2 CE2 doub Y N 334 PHE CD2 HD2 sing N N 335 PHE CE1 CZ doub Y N 336 PHE CE1 HE1 sing N N 337 PHE CE2 CZ sing Y N 338 PHE CE2 HE2 sing N N 339 PHE CZ HZ sing N N 340 PHE OXT HXT sing N N 341 PRO N CA sing N N 342 PRO N CD sing N N 343 PRO N H sing N N 344 PRO CA C sing N N 345 PRO CA CB sing N N 346 PRO CA HA sing N N 347 PRO C O doub N N 348 PRO C OXT sing N N 349 PRO CB CG sing N N 350 PRO CB HB2 sing N N 351 PRO CB HB3 sing N N 352 PRO CG CD sing N N 353 PRO CG HG2 sing N N 354 PRO CG HG3 sing N N 355 PRO CD HD2 sing N N 356 PRO CD HD3 sing N N 357 PRO OXT HXT sing N N 358 SER N CA sing N N 359 SER N H sing N N 360 SER N H2 sing N N 361 SER CA C sing N N 362 SER CA CB sing N N 363 SER CA HA sing N N 364 SER C O doub N N 365 SER C OXT sing N N 366 SER CB OG sing N N 367 SER CB HB2 sing N N 368 SER CB HB3 sing N N 369 SER OG HG sing N N 370 SER OXT HXT sing N N 371 THR N CA sing N N 372 THR N H sing N N 373 THR N H2 sing N N 374 THR CA C sing N N 375 THR CA CB sing N N 376 THR CA HA sing N N 377 THR C O doub N N 378 THR C OXT sing N N 379 THR CB OG1 sing N N 380 THR CB CG2 sing N N 381 THR CB HB sing N N 382 THR OG1 HG1 sing N N 383 THR CG2 HG21 sing N N 384 THR CG2 HG22 sing N N 385 THR CG2 HG23 sing N N 386 THR OXT HXT sing N N 387 TRP N CA sing N N 388 TRP N H sing N N 389 TRP N H2 sing N N 390 TRP CA C sing N N 391 TRP CA CB sing N N 392 TRP CA HA sing N N 393 TRP C O doub N N 394 TRP C OXT sing N N 395 TRP CB CG sing N N 396 TRP CB HB2 sing N N 397 TRP CB HB3 sing N N 398 TRP CG CD1 doub Y N 399 TRP CG CD2 sing Y N 400 TRP CD1 NE1 sing Y N 401 TRP CD1 HD1 sing N N 402 TRP CD2 CE2 doub Y N 403 TRP CD2 CE3 sing Y N 404 TRP NE1 CE2 sing Y N 405 TRP NE1 HE1 sing N N 406 TRP CE2 CZ2 sing Y N 407 TRP CE3 CZ3 doub Y N 408 TRP CE3 HE3 sing N N 409 TRP CZ2 CH2 doub Y N 410 TRP CZ2 HZ2 sing N N 411 TRP CZ3 CH2 sing Y N 412 TRP CZ3 HZ3 sing N N 413 TRP CH2 HH2 sing N N 414 TRP OXT HXT sing N N 415 TYR N CA sing N N 416 TYR N H sing N N 417 TYR N H2 sing N N 418 TYR CA C sing N N 419 TYR CA CB sing N N 420 TYR CA HA sing N N 421 TYR C O doub N N 422 TYR C OXT sing N N 423 TYR CB CG sing N N 424 TYR CB HB2 sing N N 425 TYR CB HB3 sing N N 426 TYR CG CD1 doub Y N 427 TYR CG CD2 sing Y N 428 TYR CD1 CE1 sing Y N 429 TYR CD1 HD1 sing N N 430 TYR CD2 CE2 doub Y N 431 TYR CD2 HD2 sing N N 432 TYR CE1 CZ doub Y N 433 TYR CE1 HE1 sing N N 434 TYR CE2 CZ sing Y N 435 TYR CE2 HE2 sing N N 436 TYR CZ OH sing N N 437 TYR OH HH sing N N 438 TYR OXT HXT sing N N 439 VAL N CA sing N N 440 VAL N H sing N N 441 VAL N H2 sing N N 442 VAL CA C sing N N 443 VAL CA CB sing N N 444 VAL CA HA sing N N 445 VAL C O doub N N 446 VAL C OXT sing N N 447 VAL CB CG1 sing N N 448 VAL CB CG2 sing N N 449 VAL CB HB sing N N 450 VAL CG1 HG11 sing N N 451 VAL CG1 HG12 sing N N 452 VAL CG1 HG13 sing N N 453 VAL CG2 HG21 sing N N 454 VAL CG2 HG22 sing N N 455 VAL CG2 HG23 sing N N 456 VAL OXT HXT sing N N 457 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING INDIUM' 3ZZ 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3QUG _pdbx_initial_refinement_model.details ? #