HEADER HYDROLASE 30-OCT-12 3W0F TITLE CRYSTAL STRUCTURE OF MOUSE ENDONUCLEASE VIII-LIKE 3 (MNEIL3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE 8-LIKE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GLYCOSYLASE DOMAIN, UNP RESIDUES 2-282; COMPND 5 SYNONYM: DNA GLYCOSYLASE FPG2, DNA GLYCOSYLASE/AP LYASE NEIL3, COMPND 6 ENDONUCLEASE VIII-LIKE 3, NEI-LIKE PROTEIN 3; COMPND 7 EC: 3.2.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MOUSE, NEIL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET2-T7ECOMAP-ORF6-MMUNEIL3 324 KEYWDS HELIX TWO TURNS HELIX, ZINC FINGER, DNA BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LIU,K.IMAMURA,A.M.AVERILL,S.S.WALLACE,S.DOUBLIE REVDAT 3 20-MAR-24 3W0F 1 REMARK SEQADV LINK REVDAT 2 27-FEB-13 3W0F 1 JRNL REVDAT 1 16-JAN-13 3W0F 0 JRNL AUTH M.LIU,K.IMAMURA,A.M.AVERILL,S.S.WALLACE,S.DOUBLIE JRNL TITL STRUCTURAL CHARACTERIZATION OF A MOUSE ORTHOLOG OF HUMAN JRNL TITL 2 NEIL3 WITH A MARKED PREFERENCE FOR SINGLE-STRANDED DNA JRNL REF STRUCTURE V. 21 247 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23313161 JRNL DOI 10.1016/J.STR.2012.12.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.LIU,V.BANDARU,J.P.BOND,P.JARUGA,X.ZHAO,P.P.CHRISTOV, REMARK 1 AUTH 2 C.J.BURROWS,C.J.RIZZO,M.DIZDAROGLU,S.S.WALLACE REMARK 1 TITL THE MOUSE ORTHOLOG OF NEIL3 IS A FUNCTIONAL DNA GLYCOSYLASE REMARK 1 TITL 2 IN VITRO AND IN VIVO REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 107 4925 2010 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 20185759 REMARK 1 DOI 10.1073/PNAS.0908307107 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 627378.610 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 37958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 3669 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4781 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 373 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : 4.12000 REMARK 3 B33 (A**2) : -3.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 67.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. BULK SOLVENT MODEL USED. REMARK 3 2. THE FRIEDEL PAIRS WERE USED IN PHASING. REMARK 4 REMARK 4 3W0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000095728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-10; 15-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; APS REMARK 200 BEAMLINE : NULL; 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 1.2808 REMARK 200 MONOCHROMATOR : MAR MIRRORS; SI(111) REMARK 200 OPTICS : MIRROR; SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE; REMARK 200 MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE SF FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.15M DL-MALIC ACID, REMARK 280 0.1M HEPES-NAOH, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.79000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.91150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.79000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.91150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 37 REMARK 465 PRO A 38 REMARK 465 ALA A 39 REMARK 465 MET A 40 REMARK 465 SER A 41 REMARK 465 PRO A 42 REMARK 465 ALA A 43 REMARK 465 ALA A 44 REMARK 465 SER A 45 REMARK 465 LEU A 46 REMARK 465 ALA A 47 REMARK 465 ASP A 48 REMARK 465 VAL A 49 REMARK 465 ALA A 50 REMARK 465 THR A 51 REMARK 465 SER A 52 REMARK 465 ALA A 53 REMARK 465 ALA A 54 REMARK 465 PRO A 55 REMARK 465 MET A 56 REMARK 465 ASN A 57 REMARK 465 ALA A 58 REMARK 465 LYS A 59 REMARK 465 ARG A 113 REMARK 465 ALA A 114 REMARK 465 GLY A 115 REMARK 465 ALA A 116 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 HIS A 286 REMARK 465 HIS A 287 REMARK 465 HIS A 288 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 33 CG CD OE1 NE2 REMARK 480 ASP A 60 OD1 OD2 REMARK 480 ARG A 108 CZ NH1 NH2 REMARK 480 GLU A 137 CD OE1 OE2 REMARK 480 LYS A 160 CG CD CE NZ REMARK 480 GLU A 169 CD OE1 OE2 REMARK 480 LYS A 171 CD CE NZ REMARK 480 LYS A 172 CE NZ REMARK 480 ASP A 175 CG OD1 OD2 REMARK 480 ARG A 186 NE CZ NH1 NH2 REMARK 480 LYS A 217 CD CE NZ REMARK 480 GLN A 257 CB CG CD OE1 NE2 REMARK 480 LYS A 261 CG CD CE NZ REMARK 480 GLU A 269 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 441 O HOH A 441 2656 1.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 108 13.66 -69.87 REMARK 500 GLU A 109 25.04 -144.50 REMARK 500 VAL A 249 -36.22 -134.97 REMARK 500 ASP A 256 1.93 -64.35 REMARK 500 GLN A 257 -67.12 -109.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 255 SG REMARK 620 2 CYS A 258 SG 112.2 REMARK 620 3 CYS A 277 SG 122.1 88.1 REMARK 620 4 CYS A 280 SG 105.6 107.2 119.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 305 DBREF 3W0F A 2 282 UNP Q8K203 NEIL3_MOUSE 2 282 SEQADV 3W0F HIS A 283 UNP Q8K203 EXPRESSION TAG SEQADV 3W0F HIS A 284 UNP Q8K203 EXPRESSION TAG SEQADV 3W0F HIS A 285 UNP Q8K203 EXPRESSION TAG SEQADV 3W0F HIS A 286 UNP Q8K203 EXPRESSION TAG SEQADV 3W0F HIS A 287 UNP Q8K203 EXPRESSION TAG SEQADV 3W0F HIS A 288 UNP Q8K203 EXPRESSION TAG SEQRES 1 A 287 VAL GLU GLY PRO GLY CYS THR LEU ASN GLY GLU LYS ILE SEQRES 2 A 287 ARG ALA ARG VAL LEU PRO GLY GLN ALA VAL THR GLY VAL SEQRES 3 A 287 ARG GLY THR ALA LEU GLN SER LEU LEU GLY PRO ALA MET SEQRES 4 A 287 SER PRO ALA ALA SER LEU ALA ASP VAL ALA THR SER ALA SEQRES 5 A 287 ALA PRO MET ASN ALA LYS ASP SER GLY TRP LYS LEU LEU SEQRES 6 A 287 ARG LEU PHE ASN GLY TYR VAL TYR SER GLY VAL GLU THR SEQRES 7 A 287 LEU GLY LYS GLU LEU PHE MET TYR PHE GLY PRO ARG ALA SEQRES 8 A 287 LEU ARG ILE HIS PHE GLY MET LYS GLY SER ILE LEU ILE SEQRES 9 A 287 ASN PRO ARG GLU GLY GLU ASN ARG ALA GLY ALA SER PRO SEQRES 10 A 287 ALA LEU ALA VAL GLN LEU THR ARG ASP LEU ILE CYS PHE SEQRES 11 A 287 TYR ASP SER SER VAL GLU LEU ARG ASN SER VAL GLU SER SEQRES 12 A 287 GLN GLN ARG VAL ARG VAL MET GLU GLU LEU ASP ILE CYS SEQRES 13 A 287 SER PRO LYS PHE SER PHE SER ARG ALA GLU SER GLU VAL SEQRES 14 A 287 LYS LYS GLN GLY ASP ARG MET LEU CYS ASP VAL LEU LEU SEQRES 15 A 287 ASP GLN ARG VAL LEU PRO GLY VAL GLY ASN ILE ILE LYS SEQRES 16 A 287 ASN GLU ALA LEU PHE ASP SER GLY LEU HIS PRO ALA VAL SEQRES 17 A 287 LYS VAL CYS GLN LEU SER ASP LYS GLN ALA CYS HIS LEU SEQRES 18 A 287 VAL LYS MET THR ARG ASP PHE SER ILE LEU PHE TYR ARG SEQRES 19 A 287 CYS CYS LYS ALA GLY SER ALA ILE SER LYS HIS CYS LYS SEQRES 20 A 287 VAL TYR LYS ARG PRO ASN CYS ASP GLN CYS HIS SER LYS SEQRES 21 A 287 ILE THR VAL CYS ARG PHE GLY GLU ASN SER ARG MET THR SEQRES 22 A 287 TYR PHE CYS PRO HIS CYS GLN LYS HIS HIS HIS HIS HIS SEQRES 23 A 287 HIS HET ZN A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HETNAM ZN ZINC ION HETNAM IOD IODIDE ION FORMUL 2 ZN ZN 2+ FORMUL 3 IOD 4(I 1-) FORMUL 7 HOH *169(H2 O) HELIX 1 1 GLU A 3 VAL A 18 1 16 HELIX 2 2 GLY A 29 LEU A 35 5 7 HELIX 3 3 TRP A 63 PHE A 69 5 7 HELIX 4 4 SER A 141 GLU A 152 1 12 HELIX 5 5 GLU A 153 ASP A 155 5 3 HELIX 6 6 SER A 162 LYS A 172 1 11 HELIX 7 7 MET A 177 ASP A 184 1 8 HELIX 8 8 GLY A 192 GLY A 204 1 13 HELIX 9 9 LYS A 210 LEU A 214 5 5 HELIX 10 10 SER A 215 GLY A 240 1 26 HELIX 11 11 ALA A 242 CYS A 247 5 6 SHEET 1 A 6 VAL A 24 ARG A 28 0 SHEET 2 A 6 LEU A 120 LEU A 124 -1 O GLN A 123 N GLY A 26 SHEET 3 A 6 LEU A 128 ASN A 140 -1 O PHE A 131 N LEU A 120 SHEET 4 A 6 ARG A 91 ILE A 105 -1 N ARG A 94 O GLU A 137 SHEET 5 A 6 GLU A 83 PHE A 88 -1 N LEU A 84 O ILE A 95 SHEET 6 A 6 TYR A 74 LEU A 80 -1 N GLU A 78 O PHE A 85 SHEET 1 B 2 THR A 263 CYS A 265 0 SHEET 2 B 2 THR A 274 PHE A 276 -1 O PHE A 276 N THR A 263 LINK SG CYS A 255 ZN ZN A 301 1555 1555 2.38 LINK SG CYS A 258 ZN ZN A 301 1555 1555 2.48 LINK SG CYS A 277 ZN ZN A 301 1555 1555 2.13 LINK SG CYS A 280 ZN ZN A 301 1555 1555 2.29 SITE 1 AC1 4 CYS A 255 CYS A 258 CYS A 277 CYS A 280 SITE 1 AC2 3 ARG A 67 GLY A 76 VAL A 77 SITE 1 AC3 1 SER A 244 SITE 1 AC4 1 ARG A 17 CRYST1 115.580 43.823 77.645 90.00 128.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008652 0.000000 0.006996 0.00000 SCALE2 0.000000 0.022819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016563 0.00000