data_3W5W # _entry.id 3W5W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3W5W pdb_00003w5w 10.2210/pdb3w5w/pdb RCSB RCSB095925 ? ? WWPDB D_1000095925 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3DMA _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3W5W _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-02-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Uemura, Y.' 1 'Nakagawa, N.' 2 'Wakamatsu, T.' 3 'Montelione, G.T.' 4 'Hunt, J.F.' 5 'Masui, R.' 6 'Kuramitsu, S.' 7 # _citation.id primary _citation.title ;Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins. ; _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 587 _citation.page_first 2669 _citation.page_last 2674 _citation.year 2013 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23851074 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2013.06.053 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Uemura, Y.' 1 ? primary 'Nakagawa, N.' 2 ? primary 'Wakamatsu, T.' 3 ? primary 'Kim, K.' 4 ? primary 'Montelione, G.T.' 5 ? primary 'Hunt, J.F.' 6 ? primary 'Kuramitsu, S.' 7 ? primary 'Masui, R.' 8 ? # _cell.length_a 90.828 _cell.length_b 90.828 _cell.length_c 107.878 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3W5W _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3W5W _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative exopolyphosphatase-related protein' 40280.105 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 4 water nat water 18.015 44 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDR YQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFS DISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSAL ISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEKKMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFY GTMEEAVKVFEQALEKYKPLLKELEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MLTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDR YQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFS DISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSAL ISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEKKMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFY GTMEEAVKVFEQALEKYKPLLKELEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 THR n 1 4 LYS n 1 5 VAL n 1 6 ILE n 1 7 ALA n 1 8 GLN n 1 9 ALA n 1 10 HIS n 1 11 ILE n 1 12 ASP n 1 13 HIS n 1 14 PHE n 1 15 THR n 1 16 LYS n 1 17 TRP n 1 18 PHE n 1 19 GLU n 1 20 ARG n 1 21 ALA n 1 22 ASP n 1 23 LYS n 1 24 ILE n 1 25 VAL n 1 26 ILE n 1 27 VAL n 1 28 SER n 1 29 HIS n 1 30 VAL n 1 31 SER n 1 32 PRO n 1 33 ASP n 1 34 GLY n 1 35 ASP n 1 36 ALA n 1 37 ILE n 1 38 GLY n 1 39 SER n 1 40 SER n 1 41 LEU n 1 42 GLY n 1 43 LEU n 1 44 TYR n 1 45 HIS n 1 46 PHE n 1 47 LEU n 1 48 ASP n 1 49 SER n 1 50 GLN n 1 51 ASP n 1 52 LYS n 1 53 ILE n 1 54 VAL n 1 55 ASN n 1 56 VAL n 1 57 ILE n 1 58 VAL n 1 59 PRO n 1 60 ASN n 1 61 ALA n 1 62 PHE n 1 63 PRO n 1 64 ASP n 1 65 PHE n 1 66 LEU n 1 67 LYS n 1 68 TRP n 1 69 MET n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 LYS n 1 74 ASP n 1 75 ILE n 1 76 LEU n 1 77 LEU n 1 78 TYR n 1 79 ASP n 1 80 ARG n 1 81 TYR n 1 82 GLN n 1 83 GLU n 1 84 PHE n 1 85 ALA n 1 86 ASP n 1 87 LYS n 1 88 LEU n 1 89 ILE n 1 90 MET n 1 91 GLU n 1 92 ALA n 1 93 ASP n 1 94 VAL n 1 95 ILE n 1 96 CYS n 1 97 CYS n 1 98 LEU n 1 99 ASP n 1 100 PHE n 1 101 ASN n 1 102 ALA n 1 103 LEU n 1 104 LYS n 1 105 ARG n 1 106 ILE n 1 107 ASP n 1 108 GLU n 1 109 MET n 1 110 SER n 1 111 ASP n 1 112 ILE n 1 113 VAL n 1 114 ALA n 1 115 ALA n 1 116 SER n 1 117 PRO n 1 118 GLY n 1 119 ARG n 1 120 LYS n 1 121 ILE n 1 122 MET n 1 123 ILE n 1 124 ASP n 1 125 HIS n 1 126 HIS n 1 127 LEU n 1 128 TYR n 1 129 PRO n 1 130 GLU n 1 131 ASP n 1 132 PHE n 1 133 CYS n 1 134 ARG n 1 135 ILE n 1 136 THR n 1 137 ILE n 1 138 SER n 1 139 HIS n 1 140 PRO n 1 141 GLU n 1 142 ILE n 1 143 SER n 1 144 SER n 1 145 THR n 1 146 SER n 1 147 GLU n 1 148 LEU n 1 149 VAL n 1 150 PHE n 1 151 ARG n 1 152 LEU n 1 153 ILE n 1 154 CYS n 1 155 ARG n 1 156 MET n 1 157 GLY n 1 158 TYR n 1 159 PHE n 1 160 SER n 1 161 ASP n 1 162 ILE n 1 163 SER n 1 164 LYS n 1 165 GLU n 1 166 GLY n 1 167 ALA n 1 168 GLU n 1 169 CYS n 1 170 ILE n 1 171 TYR n 1 172 THR n 1 173 GLY n 1 174 MET n 1 175 MET n 1 176 THR n 1 177 ASP n 1 178 THR n 1 179 GLY n 1 180 GLY n 1 181 PHE n 1 182 THR n 1 183 TYR n 1 184 ASN n 1 185 SER n 1 186 ASN n 1 187 ASN n 1 188 ARG n 1 189 GLU n 1 190 ILE n 1 191 TYR n 1 192 PHE n 1 193 ILE n 1 194 ILE n 1 195 SER n 1 196 GLU n 1 197 LEU n 1 198 LEU n 1 199 SER n 1 200 LYS n 1 201 GLY n 1 202 ILE n 1 203 ASP n 1 204 LYS n 1 205 ASP n 1 206 ASP n 1 207 ILE n 1 208 TYR n 1 209 ARG n 1 210 LYS n 1 211 VAL n 1 212 TYR n 1 213 ASN n 1 214 THR n 1 215 TYR n 1 216 SER n 1 217 GLU n 1 218 SER n 1 219 ARG n 1 220 LEU n 1 221 ARG n 1 222 LEU n 1 223 MET n 1 224 GLY n 1 225 TYR n 1 226 VAL n 1 227 LEU n 1 228 SER n 1 229 ASN n 1 230 MET n 1 231 LYS n 1 232 VAL n 1 233 TYR n 1 234 LYS n 1 235 ASP n 1 236 TYR n 1 237 ASN n 1 238 SER n 1 239 ALA n 1 240 LEU n 1 241 ILE n 1 242 SER n 1 243 LEU n 1 244 THR n 1 245 LYS n 1 246 GLU n 1 247 GLU n 1 248 GLN n 1 249 GLY n 1 250 LYS n 1 251 PHE n 1 252 ASP n 1 253 TYR n 1 254 ILE n 1 255 LYS n 1 256 GLY n 1 257 ASP n 1 258 SER n 1 259 GLU n 1 260 GLY n 1 261 PHE n 1 262 VAL n 1 263 ASN n 1 264 ILE n 1 265 PRO n 1 266 LEU n 1 267 SER n 1 268 ILE n 1 269 LYS n 1 270 ASN n 1 271 VAL n 1 272 CYS n 1 273 PHE n 1 274 SER n 1 275 CYS n 1 276 PHE n 1 277 LEU n 1 278 ARG n 1 279 GLU n 1 280 ASP n 1 281 THR n 1 282 GLU n 1 283 LYS n 1 284 LYS n 1 285 MET n 1 286 ILE n 1 287 LYS n 1 288 ILE n 1 289 SER n 1 290 LEU n 1 291 ARG n 1 292 SER n 1 293 VAL n 1 294 GLY n 1 295 LYS n 1 296 PHE n 1 297 PRO n 1 298 CYS n 1 299 ASN n 1 300 ARG n 1 301 LEU n 1 302 ALA n 1 303 ALA n 1 304 GLU n 1 305 PHE n 1 306 PHE n 1 307 ASN n 1 308 GLY n 1 309 GLY n 1 310 GLY n 1 311 HIS n 1 312 LEU n 1 313 ASN n 1 314 ALA n 1 315 SER n 1 316 GLY n 1 317 GLY n 1 318 GLU n 1 319 PHE n 1 320 TYR n 1 321 GLY n 1 322 THR n 1 323 MET n 1 324 GLU n 1 325 GLU n 1 326 ALA n 1 327 VAL n 1 328 LYS n 1 329 VAL n 1 330 PHE n 1 331 GLU n 1 332 GLN n 1 333 ALA n 1 334 LEU n 1 335 GLU n 1 336 LYS n 1 337 TYR n 1 338 LYS n 1 339 PRO n 1 340 LEU n 1 341 LEU n 1 342 LYS n 1 343 GLU n 1 344 LEU n 1 345 GLU n 1 346 HIS n 1 347 HIS n 1 348 HIS n 1 349 HIS n 1 350 HIS n 1 351 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BF3900 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain YCH46 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 295405 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2(DE3)pLysE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-21d _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q64PD9_BACFR _struct_ref.pdbx_db_accession Q64PD9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDR YQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFS DISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSAL ISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEKKMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFY GTMEEAVKVFEQALEKYKPLLKE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3W5W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 343 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q64PD9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 343 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 343 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3W5W LEU A 344 ? UNP Q64PD9 ? ? 'expression tag' 344 1 1 3W5W GLU A 345 ? UNP Q64PD9 ? ? 'expression tag' 345 2 1 3W5W HIS A 346 ? UNP Q64PD9 ? ? 'expression tag' 346 3 1 3W5W HIS A 347 ? UNP Q64PD9 ? ? 'expression tag' 347 4 1 3W5W HIS A 348 ? UNP Q64PD9 ? ? 'expression tag' 348 5 1 3W5W HIS A 349 ? UNP Q64PD9 ? ? 'expression tag' 349 6 1 3W5W HIS A 350 ? UNP Q64PD9 ? ? 'expression tag' 350 7 1 3W5W HIS A 351 ? UNP Q64PD9 ? ? 'expression tag' 351 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3W5W _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.989 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 3.19 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 61.43 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.1M sodium acetate trihydrate (pH 5.2), 1.6M NaCl, 5mM MgCl2, 10mM 3'-phosphoguanosine 5' phophate, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2012-11-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000000 _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 # _reflns.entry_id 3W5W _reflns.d_resolution_high 2.950 _reflns.d_resolution_low 50.000 _reflns.number_obs 11209 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_netI_over_sigmaI 9.100 _reflns.pdbx_chi_squared 1.252 _reflns.pdbx_redundancy 21.900 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.950 3.000 ? ? ? ? 0.302 ? ? 0.821 22.300 ? ? ? 556 ? ? ? ? 100.000 ? ? 1 1 3.000 3.060 ? ? ? ? 0.298 ? ? 0.876 22.200 ? ? ? 546 ? ? ? ? 100.000 ? ? 2 1 3.060 3.110 ? ? ? ? 0.254 ? ? 0.923 22.300 ? ? ? 545 ? ? ? ? 100.000 ? ? 3 1 3.110 3.180 ? ? ? ? 0.240 ? ? 0.946 22.200 ? ? ? 563 ? ? ? ? 100.000 ? ? 4 1 3.180 3.250 ? ? ? ? 0.238 ? ? 1.005 22.400 ? ? ? 551 ? ? ? ? 100.000 ? ? 5 1 3.250 3.320 ? ? ? ? 0.194 ? ? 1.103 22.200 ? ? ? 535 ? ? ? ? 100.000 ? ? 6 1 3.320 3.410 ? ? ? ? 0.200 ? ? 1.307 22.300 ? ? ? 562 ? ? ? ? 100.000 ? ? 7 1 3.410 3.500 ? ? ? ? 0.183 ? ? 1.719 22.000 ? ? ? 552 ? ? ? ? 100.000 ? ? 8 1 3.500 3.600 ? ? ? ? 0.140 ? ? 1.538 22.000 ? ? ? 568 ? ? ? ? 100.000 ? ? 9 1 3.600 3.720 ? ? ? ? 0.159 ? ? 2.084 21.600 ? ? ? 534 ? ? ? ? 100.000 ? ? 10 1 3.720 3.850 ? ? ? ? 0.126 ? ? 1.700 22.200 ? ? ? 550 ? ? ? ? 100.000 ? ? 11 1 3.850 4.000 ? ? ? ? 0.127 ? ? 2.084 21.700 ? ? ? 565 ? ? ? ? 100.000 ? ? 12 1 4.000 4.190 ? ? ? ? 0.088 ? ? 1.446 22.000 ? ? ? 554 ? ? ? ? 100.000 ? ? 13 1 4.190 4.410 ? ? ? ? 0.073 ? ? 1.300 22.200 ? ? ? 563 ? ? ? ? 100.000 ? ? 14 1 4.410 4.680 ? ? ? ? 0.060 ? ? 1.151 21.900 ? ? ? 568 ? ? ? ? 100.000 ? ? 15 1 4.680 5.040 ? ? ? ? 0.054 ? ? 1.056 22.000 ? ? ? 567 ? ? ? ? 100.000 ? ? 16 1 5.040 5.550 ? ? ? ? 0.055 ? ? 0.950 21.700 ? ? ? 560 ? ? ? ? 100.000 ? ? 17 1 5.550 6.350 ? ? ? ? 0.053 ? ? 0.907 21.500 ? ? ? 576 ? ? ? ? 100.000 ? ? 18 1 6.350 8.000 ? ? ? ? 0.041 ? ? 0.962 21.200 ? ? ? 583 ? ? ? ? 100.000 ? ? 19 1 8.000 50.000 ? ? ? ? 0.032 ? ? 1.223 19.600 ? ? ? 611 ? ? ? ? 96.800 ? ? 20 1 # _refine.entry_id 3W5W _refine.ls_d_res_high 2.9500 _refine.ls_d_res_low 50.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.0000 _refine.ls_number_reflns_obs 11123 _refine.ls_number_reflns_all 11123 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2152 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2701 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 558 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 60.7994 _refine.solvent_model_param_bsol 35.7042 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 13.3920 _refine.aniso_B[2][2] 13.3920 _refine.aniso_B[3][3] -26.7850 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3DMA _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8094 _refine.B_iso_max 125.800 _refine.B_iso_min 10.020 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2724 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 44 _refine_hist.number_atoms_total 2794 _refine_hist.d_res_high 2.9500 _refine_hist.d_res_low 50.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d ? 0.007 ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? 1.313 ? ? ? 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 dna-rna_rep.param ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' 4 ion.param ? 'X-RAY DIFFRACTION' 5 carbohydrate.param ? 'X-RAY DIFFRACTION' 6 5gp.param ? # _struct.entry_id 3W5W _struct.title 'Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3W5W _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'DHH phosphatase, DHHA1 motif, phosphatase, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details '-x, -x+y, -z+2/3' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 7 ? ALA A 21 ? ALA A 7 ALA A 21 1 ? 15 HELX_P HELX_P2 2 ASP A 33 ? GLN A 50 ? ASP A 33 GLN A 50 1 ? 18 HELX_P HELX_P3 3 PRO A 63 ? LYS A 67 ? PRO A 63 LYS A 67 5 ? 5 HELX_P HELX_P4 4 GLY A 71 ? ILE A 75 ? GLY A 71 ILE A 75 5 ? 5 HELX_P HELX_P5 5 TYR A 78 ? ALA A 92 ? TYR A 78 ALA A 92 1 ? 15 HELX_P HELX_P6 6 ALA A 102 ? ASP A 107 ? ALA A 102 ASP A 107 5 ? 6 HELX_P HELX_P7 7 MET A 109 ? SER A 116 ? MET A 109 SER A 116 1 ? 8 HELX_P HELX_P8 8 SER A 144 ? MET A 156 ? SER A 144 MET A 156 1 ? 13 HELX_P HELX_P9 9 TYR A 158 ? ILE A 162 ? TYR A 158 ILE A 162 5 ? 5 HELX_P HELX_P10 10 SER A 163 ? ASP A 177 ? SER A 163 ASP A 177 1 ? 15 HELX_P HELX_P11 11 ASN A 187 ? SER A 199 ? ASN A 187 SER A 199 1 ? 13 HELX_P HELX_P12 12 ASP A 203 ? ASN A 213 ? ASP A 203 ASN A 213 1 ? 11 HELX_P HELX_P13 13 SER A 216 ? MET A 230 ? SER A 216 MET A 230 1 ? 15 HELX_P HELX_P14 14 LYS A 234 ? TYR A 236 ? LYS A 234 TYR A 236 5 ? 3 HELX_P HELX_P15 15 THR A 244 ? PHE A 251 ? THR A 244 PHE A 251 1 ? 8 HELX_P HELX_P16 16 ASN A 263 ? ILE A 268 ? ASN A 263 ILE A 268 5 ? 6 HELX_P HELX_P17 17 PRO A 297 ? GLU A 304 ? PRO A 297 GLU A 304 1 ? 8 HELX_P HELX_P18 18 THR A 322 ? LYS A 338 ? THR A 322 LYS A 338 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 29 NE2 ? ? ? 1_555 C MN . MN ? ? A HIS 29 A MN 402 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc2 metalc ? ? A ASP 33 OD1 ? ? ? 1_555 C MN . MN ? ? A ASP 33 A MN 402 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc3 metalc ? ? A ASP 35 OD2 ? ? ? 1_555 D MN . MN ? ? A ASP 35 A MN 403 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc4 metalc ? ? A ASP 99 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 99 A MN 402 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc5 metalc ? ? A ASP 99 OD1 ? ? ? 1_555 D MN . MN ? ? A ASP 99 A MN 403 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc6 metalc ? ? A HIS 125 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 125 A MN 403 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc7 metalc ? ? A ASP 177 OD2 ? ? ? 1_555 D MN . MN ? ? A ASP 177 A MN 403 1_555 ? ? ? ? ? ? ? 2.232 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 76 ? LEU A 77 ? LEU A 76 LEU A 77 A 2 ILE A 53 ? VAL A 58 ? ILE A 53 VAL A 58 A 3 LYS A 23 ? SER A 28 ? LYS A 23 SER A 28 A 4 VAL A 94 ? LEU A 98 ? VAL A 94 LEU A 98 A 5 ARG A 119 ? ASP A 124 ? ARG A 119 ASP A 124 A 6 ILE A 135 ? SER A 138 ? ILE A 135 SER A 138 B 1 LYS A 231 ? TYR A 233 ? LYS A 231 TYR A 233 B 2 SER A 238 ? LEU A 243 ? SER A 238 LEU A 243 B 3 PHE A 273 ? GLU A 279 ? PHE A 273 GLU A 279 B 4 ILE A 286 ? SER A 292 ? ILE A 286 SER A 292 B 5 ALA A 314 ? PHE A 319 ? ALA A 314 PHE A 319 B 6 GLY A 309 ? GLY A 310 ? GLY A 309 GLY A 310 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 76 ? O LEU A 76 N VAL A 56 ? N VAL A 56 A 2 3 O ILE A 53 ? O ILE A 53 N ILE A 24 ? N ILE A 24 A 3 4 N VAL A 27 ? N VAL A 27 O CYS A 96 ? O CYS A 96 A 4 5 N CYS A 97 ? N CYS A 97 O ILE A 121 ? O ILE A 121 A 5 6 N MET A 122 ? N MET A 122 O ILE A 137 ? O ILE A 137 B 1 2 N LYS A 231 ? N LYS A 231 O LEU A 240 ? O LEU A 240 B 2 3 N ALA A 239 ? N ALA A 239 O CYS A 275 ? O CYS A 275 B 3 4 N SER A 274 ? N SER A 274 O ARG A 291 ? O ARG A 291 B 4 5 N LEU A 290 ? N LEU A 290 O SER A 315 ? O SER A 315 B 5 6 O GLY A 316 ? O GLY A 316 N GLY A 309 ? N GLY A 309 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5GP 401 ? 9 'BINDING SITE FOR RESIDUE 5GP A 401' AC2 Software A MN 402 ? 4 'BINDING SITE FOR RESIDUE MN A 402' AC3 Software A MN 403 ? 5 'BINDING SITE FOR RESIDUE MN A 403' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ARG A 105 ? ARG A 105 . ? 1_555 ? 2 AC1 9 LYS A 287 ? LYS A 287 . ? 1_555 ? 3 AC1 9 SER A 289 ? SER A 289 . ? 1_555 ? 4 AC1 9 ARG A 291 ? ARG A 291 . ? 1_555 ? 5 AC1 9 GLY A 308 ? GLY A 308 . ? 1_555 ? 6 AC1 9 GLY A 309 ? GLY A 309 . ? 1_555 ? 7 AC1 9 SER A 315 ? SER A 315 . ? 1_555 ? 8 AC1 9 GLY A 316 ? GLY A 316 . ? 1_555 ? 9 AC1 9 GLY A 317 ? GLY A 317 . ? 1_555 ? 10 AC2 4 HIS A 29 ? HIS A 29 . ? 1_555 ? 11 AC2 4 ASP A 33 ? ASP A 33 . ? 1_555 ? 12 AC2 4 ASP A 99 ? ASP A 99 . ? 1_555 ? 13 AC2 4 MN D . ? MN A 403 . ? 1_555 ? 14 AC3 5 ASP A 35 ? ASP A 35 . ? 1_555 ? 15 AC3 5 ASP A 99 ? ASP A 99 . ? 1_555 ? 16 AC3 5 HIS A 125 ? HIS A 125 . ? 1_555 ? 17 AC3 5 ASP A 177 ? ASP A 177 . ? 1_555 ? 18 AC3 5 MN C . ? MN A 402 . ? 1_555 ? # _atom_sites.entry_id 3W5W _atom_sites.fract_transf_matrix[1][1] 0.011010 _atom_sites.fract_transf_matrix[1][2] 0.006357 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012713 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009270 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 TRP 68 68 68 TRP TRP A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 MET 90 90 90 MET MET A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 CYS 96 96 96 CYS CYS A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 MET 122 122 122 MET MET A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 HIS 125 125 125 HIS HIS A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 CYS 133 133 133 CYS CYS A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 HIS 139 139 139 HIS HIS A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 CYS 154 154 154 CYS CYS A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 MET 156 156 156 MET MET A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 SER 160 160 160 SER SER A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 LYS 164 164 164 LYS LYS A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 CYS 169 169 169 CYS CYS A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 MET 174 174 174 MET MET A . n A 1 175 MET 175 175 175 MET MET A . n A 1 176 THR 176 176 176 THR THR A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 TYR 183 183 183 TYR TYR A . n A 1 184 ASN 184 184 184 ASN ASN A . n A 1 185 SER 185 185 185 SER SER A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ASN 187 187 187 ASN ASN A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 ILE 190 190 190 ILE ILE A . n A 1 191 TYR 191 191 191 TYR TYR A . n A 1 192 PHE 192 192 192 PHE PHE A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 SER 195 195 195 SER SER A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 GLY 201 201 201 GLY GLY A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 ASP 203 203 203 ASP ASP A . n A 1 204 LYS 204 204 204 LYS LYS A . n A 1 205 ASP 205 205 205 ASP ASP A . n A 1 206 ASP 206 206 206 ASP ASP A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 TYR 208 208 208 TYR TYR A . n A 1 209 ARG 209 209 209 ARG ARG A . n A 1 210 LYS 210 210 210 LYS LYS A . n A 1 211 VAL 211 211 211 VAL VAL A . n A 1 212 TYR 212 212 212 TYR TYR A . n A 1 213 ASN 213 213 213 ASN ASN A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 TYR 215 215 215 TYR TYR A . n A 1 216 SER 216 216 216 SER SER A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 SER 218 218 218 SER SER A . n A 1 219 ARG 219 219 219 ARG ARG A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 ARG 221 221 221 ARG ARG A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 MET 223 223 223 MET MET A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 TYR 225 225 225 TYR TYR A . n A 1 226 VAL 226 226 226 VAL VAL A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 ASN 229 229 229 ASN ASN A . n A 1 230 MET 230 230 230 MET MET A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 TYR 233 233 233 TYR TYR A . n A 1 234 LYS 234 234 234 LYS LYS A . n A 1 235 ASP 235 235 235 ASP ASP A . n A 1 236 TYR 236 236 236 TYR TYR A . n A 1 237 ASN 237 237 237 ASN ASN A . n A 1 238 SER 238 238 238 SER SER A . n A 1 239 ALA 239 239 239 ALA ALA A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 ILE 241 241 241 ILE ILE A . n A 1 242 SER 242 242 242 SER SER A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 THR 244 244 244 THR THR A . n A 1 245 LYS 245 245 245 LYS LYS A . n A 1 246 GLU 246 246 246 GLU GLU A . n A 1 247 GLU 247 247 247 GLU GLU A . n A 1 248 GLN 248 248 248 GLN GLN A . n A 1 249 GLY 249 249 249 GLY GLY A . n A 1 250 LYS 250 250 250 LYS LYS A . n A 1 251 PHE 251 251 251 PHE PHE A . n A 1 252 ASP 252 252 252 ASP ASP A . n A 1 253 TYR 253 253 253 TYR TYR A . n A 1 254 ILE 254 254 254 ILE ILE A . n A 1 255 LYS 255 255 255 LYS LYS A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 ASP 257 257 257 ASP ASP A . n A 1 258 SER 258 258 258 SER SER A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 GLY 260 260 260 GLY GLY A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 VAL 262 262 262 VAL VAL A . n A 1 263 ASN 263 263 263 ASN ASN A . n A 1 264 ILE 264 264 264 ILE ILE A . n A 1 265 PRO 265 265 265 PRO PRO A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 ILE 268 268 268 ILE ILE A . n A 1 269 LYS 269 269 269 LYS LYS A . n A 1 270 ASN 270 270 270 ASN ASN A . n A 1 271 VAL 271 271 271 VAL VAL A . n A 1 272 CYS 272 272 272 CYS CYS A . n A 1 273 PHE 273 273 273 PHE PHE A . n A 1 274 SER 274 274 274 SER SER A . n A 1 275 CYS 275 275 275 CYS CYS A . n A 1 276 PHE 276 276 276 PHE PHE A . n A 1 277 LEU 277 277 277 LEU LEU A . n A 1 278 ARG 278 278 278 ARG ARG A . n A 1 279 GLU 279 279 279 GLU GLU A . n A 1 280 ASP 280 280 280 ASP ASP A . n A 1 281 THR 281 281 281 THR THR A . n A 1 282 GLU 282 282 282 GLU GLU A . n A 1 283 LYS 283 283 ? ? ? A . n A 1 284 LYS 284 284 ? ? ? A . n A 1 285 MET 285 285 285 MET MET A . n A 1 286 ILE 286 286 286 ILE ILE A . n A 1 287 LYS 287 287 287 LYS LYS A . n A 1 288 ILE 288 288 288 ILE ILE A . n A 1 289 SER 289 289 289 SER SER A . n A 1 290 LEU 290 290 290 LEU LEU A . n A 1 291 ARG 291 291 291 ARG ARG A . n A 1 292 SER 292 292 292 SER SER A . n A 1 293 VAL 293 293 293 VAL VAL A . n A 1 294 GLY 294 294 294 GLY GLY A . n A 1 295 LYS 295 295 295 LYS LYS A . n A 1 296 PHE 296 296 296 PHE PHE A . n A 1 297 PRO 297 297 297 PRO PRO A . n A 1 298 CYS 298 298 298 CYS CYS A . n A 1 299 ASN 299 299 299 ASN ASN A . n A 1 300 ARG 300 300 300 ARG ARG A . n A 1 301 LEU 301 301 301 LEU LEU A . n A 1 302 ALA 302 302 302 ALA ALA A . n A 1 303 ALA 303 303 303 ALA ALA A . n A 1 304 GLU 304 304 304 GLU GLU A . n A 1 305 PHE 305 305 305 PHE PHE A . n A 1 306 PHE 306 306 306 PHE PHE A . n A 1 307 ASN 307 307 307 ASN ASN A . n A 1 308 GLY 308 308 308 GLY GLY A . n A 1 309 GLY 309 309 309 GLY GLY A . n A 1 310 GLY 310 310 310 GLY GLY A . n A 1 311 HIS 311 311 311 HIS HIS A . n A 1 312 LEU 312 312 312 LEU LEU A . n A 1 313 ASN 313 313 313 ASN ASN A . n A 1 314 ALA 314 314 314 ALA ALA A . n A 1 315 SER 315 315 315 SER SER A . n A 1 316 GLY 316 316 316 GLY GLY A . n A 1 317 GLY 317 317 317 GLY GLY A . n A 1 318 GLU 318 318 318 GLU GLU A . n A 1 319 PHE 319 319 319 PHE PHE A . n A 1 320 TYR 320 320 320 TYR TYR A . n A 1 321 GLY 321 321 321 GLY GLY A . n A 1 322 THR 322 322 322 THR THR A . n A 1 323 MET 323 323 323 MET MET A . n A 1 324 GLU 324 324 324 GLU GLU A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 ALA 326 326 326 ALA ALA A . n A 1 327 VAL 327 327 327 VAL VAL A . n A 1 328 LYS 328 328 328 LYS LYS A . n A 1 329 VAL 329 329 329 VAL VAL A . n A 1 330 PHE 330 330 330 PHE PHE A . n A 1 331 GLU 331 331 331 GLU GLU A . n A 1 332 GLN 332 332 332 GLN GLN A . n A 1 333 ALA 333 333 333 ALA ALA A . n A 1 334 LEU 334 334 334 LEU LEU A . n A 1 335 GLU 335 335 335 GLU GLU A . n A 1 336 LYS 336 336 336 LYS LYS A . n A 1 337 TYR 337 337 337 TYR TYR A . n A 1 338 LYS 338 338 338 LYS LYS A . n A 1 339 PRO 339 339 339 PRO PRO A . n A 1 340 LEU 340 340 340 LEU LEU A . n A 1 341 LEU 341 341 341 LEU LEU A . n A 1 342 LYS 342 342 342 LYS LYS A . n A 1 343 GLU 343 343 343 GLU GLU A . n A 1 344 LEU 344 344 ? ? ? A . n A 1 345 GLU 345 345 ? ? ? A . n A 1 346 HIS 346 346 ? ? ? A . n A 1 347 HIS 347 347 ? ? ? A . n A 1 348 HIS 348 348 ? ? ? A . n A 1 349 HIS 349 349 ? ? ? A . n A 1 350 HIS 350 350 ? ? ? A . n A 1 351 HIS 351 351 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP 1 401 1 5GP 5GP A . C 3 MN 1 402 1 MN MN A . D 3 MN 1 403 2 MN MN A . E 4 HOH 1 501 1 HOH HOH A . E 4 HOH 2 502 2 HOH HOH A . E 4 HOH 3 503 3 HOH HOH A . E 4 HOH 4 504 4 HOH HOH A . E 4 HOH 5 505 5 HOH HOH A . E 4 HOH 6 506 6 HOH HOH A . E 4 HOH 7 507 7 HOH HOH A . E 4 HOH 8 508 8 HOH HOH A . E 4 HOH 9 509 9 HOH HOH A . E 4 HOH 10 510 10 HOH HOH A . E 4 HOH 11 511 11 HOH HOH A . E 4 HOH 12 512 12 HOH HOH A . E 4 HOH 13 513 13 HOH HOH A . E 4 HOH 14 514 14 HOH HOH A . E 4 HOH 15 515 15 HOH HOH A . E 4 HOH 16 516 16 HOH HOH A . E 4 HOH 17 517 17 HOH HOH A . E 4 HOH 18 518 18 HOH HOH A . E 4 HOH 19 519 19 HOH HOH A . E 4 HOH 20 520 20 HOH HOH A . E 4 HOH 21 521 21 HOH HOH A . E 4 HOH 22 522 22 HOH HOH A . E 4 HOH 23 523 23 HOH HOH A . E 4 HOH 24 524 24 HOH HOH A . E 4 HOH 25 525 25 HOH HOH A . E 4 HOH 26 526 26 HOH HOH A . E 4 HOH 27 527 27 HOH HOH A . E 4 HOH 28 528 28 HOH HOH A . E 4 HOH 29 529 29 HOH HOH A . E 4 HOH 30 530 30 HOH HOH A . E 4 HOH 31 531 31 HOH HOH A . E 4 HOH 32 532 32 HOH HOH A . E 4 HOH 33 533 33 HOH HOH A . E 4 HOH 34 534 34 HOH HOH A . E 4 HOH 35 535 35 HOH HOH A . E 4 HOH 36 536 36 HOH HOH A . E 4 HOH 37 537 37 HOH HOH A . E 4 HOH 38 538 38 HOH HOH A . E 4 HOH 39 539 40 HOH HOH A . E 4 HOH 40 540 41 HOH HOH A . E 4 HOH 41 541 42 HOH HOH A . E 4 HOH 42 542 43 HOH HOH A . E 4 HOH 43 543 44 HOH HOH A . E 4 HOH 44 544 45 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5140 ? 1 MORE -44 ? 1 'SSA (A^2)' 28480 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 71.9186666667 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 29 ? A HIS 29 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 OD1 ? A ASP 33 ? A ASP 33 ? 1_555 65.2 ? 2 NE2 ? A HIS 29 ? A HIS 29 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 OD2 ? A ASP 99 ? A ASP 99 ? 1_555 76.3 ? 3 OD1 ? A ASP 33 ? A ASP 33 ? 1_555 MN ? C MN . ? A MN 402 ? 1_555 OD2 ? A ASP 99 ? A ASP 99 ? 1_555 112.4 ? 4 OD2 ? A ASP 35 ? A ASP 35 ? 1_555 MN ? D MN . ? A MN 403 ? 1_555 OD1 ? A ASP 99 ? A ASP 99 ? 1_555 77.7 ? 5 OD2 ? A ASP 35 ? A ASP 35 ? 1_555 MN ? D MN . ? A MN 403 ? 1_555 NE2 ? A HIS 125 ? A HIS 125 ? 1_555 98.9 ? 6 OD1 ? A ASP 99 ? A ASP 99 ? 1_555 MN ? D MN . ? A MN 403 ? 1_555 NE2 ? A HIS 125 ? A HIS 125 ? 1_555 96.6 ? 7 OD2 ? A ASP 35 ? A ASP 35 ? 1_555 MN ? D MN . ? A MN 403 ? 1_555 OD2 ? A ASP 177 ? A ASP 177 ? 1_555 85.2 ? 8 OD1 ? A ASP 99 ? A ASP 99 ? 1_555 MN ? D MN . ? A MN 403 ? 1_555 OD2 ? A ASP 177 ? A ASP 177 ? 1_555 162.7 ? 9 NE2 ? A HIS 125 ? A HIS 125 ? 1_555 MN ? D MN . ? A MN 403 ? 1_555 OD2 ? A ASP 177 ? A ASP 177 ? 1_555 83.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-10 2 'Structure model' 1 1 2022-08-24 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' database_2 3 2 'Structure model' pdbx_struct_conn_angle 4 2 'Structure model' struct_conn 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site 7 3 'Structure model' chem_comp_atom 8 3 'Structure model' chem_comp_bond 9 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_database_2.pdbx_DOI' 14 2 'Structure model' '_database_2.pdbx_database_accession' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 21 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 22 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 26 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 27 2 'Structure model' '_pdbx_struct_conn_angle.value' 28 2 'Structure model' '_struct_conn.pdbx_dist_value' 29 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 2 'Structure model' '_struct_ref_seq_dif.details' 37 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 50 ? ? -91.71 34.07 2 1 PRO A 63 ? ? -44.08 152.06 3 1 PHE A 65 ? ? -67.89 5.20 4 1 ARG A 80 ? ? -145.57 -7.51 5 1 TYR A 81 ? ? -144.17 27.97 6 1 ASP A 107 ? ? -13.64 112.12 7 1 GLU A 108 ? ? 105.86 -43.58 8 1 TYR A 128 ? ? 60.48 70.56 9 1 ASN A 213 ? ? -114.52 50.92 10 1 TYR A 215 ? ? 179.85 144.18 11 1 SER A 216 ? ? -42.50 155.52 12 1 LYS A 234 ? ? -28.89 -44.72 13 1 ASN A 270 ? ? 96.23 33.07 14 1 THR A 281 ? ? -41.95 88.87 15 1 PRO A 297 ? ? -69.74 95.88 16 1 PHE A 305 ? ? -155.50 -20.47 17 1 ASN A 307 ? ? 36.58 52.11 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 191 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.083 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LYS 283 ? A LYS 283 3 1 Y 1 A LYS 284 ? A LYS 284 4 1 Y 1 A LEU 344 ? A LEU 344 5 1 Y 1 A GLU 345 ? A GLU 345 6 1 Y 1 A HIS 346 ? A HIS 346 7 1 Y 1 A HIS 347 ? A HIS 347 8 1 Y 1 A HIS 348 ? A HIS 348 9 1 Y 1 A HIS 349 ? A HIS 349 10 1 Y 1 A HIS 350 ? A HIS 350 11 1 Y 1 A HIS 351 ? A HIS 351 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 GLN N N N N 126 GLN CA C N S 127 GLN C C N N 128 GLN O O N N 129 GLN CB C N N 130 GLN CG C N N 131 GLN CD C N N 132 GLN OE1 O N N 133 GLN NE2 N N N 134 GLN OXT O N N 135 GLN H H N N 136 GLN H2 H N N 137 GLN HA H N N 138 GLN HB2 H N N 139 GLN HB3 H N N 140 GLN HG2 H N N 141 GLN HG3 H N N 142 GLN HE21 H N N 143 GLN HE22 H N N 144 GLN HXT H N N 145 GLU N N N N 146 GLU CA C N S 147 GLU C C N N 148 GLU O O N N 149 GLU CB C N N 150 GLU CG C N N 151 GLU CD C N N 152 GLU OE1 O N N 153 GLU OE2 O N N 154 GLU OXT O N N 155 GLU H H N N 156 GLU H2 H N N 157 GLU HA H N N 158 GLU HB2 H N N 159 GLU HB3 H N N 160 GLU HG2 H N N 161 GLU HG3 H N N 162 GLU HE2 H N N 163 GLU HXT H N N 164 GLY N N N N 165 GLY CA C N N 166 GLY C C N N 167 GLY O O N N 168 GLY OXT O N N 169 GLY H H N N 170 GLY H2 H N N 171 GLY HA2 H N N 172 GLY HA3 H N N 173 GLY HXT H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 MET N N N N 268 MET CA C N S 269 MET C C N N 270 MET O O N N 271 MET CB C N N 272 MET CG C N N 273 MET SD S N N 274 MET CE C N N 275 MET OXT O N N 276 MET H H N N 277 MET H2 H N N 278 MET HA H N N 279 MET HB2 H N N 280 MET HB3 H N N 281 MET HG2 H N N 282 MET HG3 H N N 283 MET HE1 H N N 284 MET HE2 H N N 285 MET HE3 H N N 286 MET HXT H N N 287 MN MN MN N N 288 PHE N N N N 289 PHE CA C N S 290 PHE C C N N 291 PHE O O N N 292 PHE CB C N N 293 PHE CG C Y N 294 PHE CD1 C Y N 295 PHE CD2 C Y N 296 PHE CE1 C Y N 297 PHE CE2 C Y N 298 PHE CZ C Y N 299 PHE OXT O N N 300 PHE H H N N 301 PHE H2 H N N 302 PHE HA H N N 303 PHE HB2 H N N 304 PHE HB3 H N N 305 PHE HD1 H N N 306 PHE HD2 H N N 307 PHE HE1 H N N 308 PHE HE2 H N N 309 PHE HZ H N N 310 PHE HXT H N N 311 PRO N N N N 312 PRO CA C N S 313 PRO C C N N 314 PRO O O N N 315 PRO CB C N N 316 PRO CG C N N 317 PRO CD C N N 318 PRO OXT O N N 319 PRO H H N N 320 PRO HA H N N 321 PRO HB2 H N N 322 PRO HB3 H N N 323 PRO HG2 H N N 324 PRO HG3 H N N 325 PRO HD2 H N N 326 PRO HD3 H N N 327 PRO HXT H N N 328 SER N N N N 329 SER CA C N S 330 SER C C N N 331 SER O O N N 332 SER CB C N N 333 SER OG O N N 334 SER OXT O N N 335 SER H H N N 336 SER H2 H N N 337 SER HA H N N 338 SER HB2 H N N 339 SER HB3 H N N 340 SER HG H N N 341 SER HXT H N N 342 THR N N N N 343 THR CA C N S 344 THR C C N N 345 THR O O N N 346 THR CB C N R 347 THR OG1 O N N 348 THR CG2 C N N 349 THR OXT O N N 350 THR H H N N 351 THR H2 H N N 352 THR HA H N N 353 THR HB H N N 354 THR HG1 H N N 355 THR HG21 H N N 356 THR HG22 H N N 357 THR HG23 H N N 358 THR HXT H N N 359 TRP N N N N 360 TRP CA C N S 361 TRP C C N N 362 TRP O O N N 363 TRP CB C N N 364 TRP CG C Y N 365 TRP CD1 C Y N 366 TRP CD2 C Y N 367 TRP NE1 N Y N 368 TRP CE2 C Y N 369 TRP CE3 C Y N 370 TRP CZ2 C Y N 371 TRP CZ3 C Y N 372 TRP CH2 C Y N 373 TRP OXT O N N 374 TRP H H N N 375 TRP H2 H N N 376 TRP HA H N N 377 TRP HB2 H N N 378 TRP HB3 H N N 379 TRP HD1 H N N 380 TRP HE1 H N N 381 TRP HE3 H N N 382 TRP HZ2 H N N 383 TRP HZ3 H N N 384 TRP HH2 H N N 385 TRP HXT H N N 386 TYR N N N N 387 TYR CA C N S 388 TYR C C N N 389 TYR O O N N 390 TYR CB C N N 391 TYR CG C Y N 392 TYR CD1 C Y N 393 TYR CD2 C Y N 394 TYR CE1 C Y N 395 TYR CE2 C Y N 396 TYR CZ C Y N 397 TYR OH O N N 398 TYR OXT O N N 399 TYR H H N N 400 TYR H2 H N N 401 TYR HA H N N 402 TYR HB2 H N N 403 TYR HB3 H N N 404 TYR HD1 H N N 405 TYR HD2 H N N 406 TYR HE1 H N N 407 TYR HE2 H N N 408 TYR HH H N N 409 TYR HXT H N N 410 VAL N N N N 411 VAL CA C N S 412 VAL C C N N 413 VAL O O N N 414 VAL CB C N N 415 VAL CG1 C N N 416 VAL CG2 C N N 417 VAL OXT O N N 418 VAL H H N N 419 VAL H2 H N N 420 VAL HA H N N 421 VAL HB H N N 422 VAL HG11 H N N 423 VAL HG12 H N N 424 VAL HG13 H N N 425 VAL HG21 H N N 426 VAL HG22 H N N 427 VAL HG23 H N N 428 VAL HXT H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 GLN N CA sing N N 123 GLN N H sing N N 124 GLN N H2 sing N N 125 GLN CA C sing N N 126 GLN CA CB sing N N 127 GLN CA HA sing N N 128 GLN C O doub N N 129 GLN C OXT sing N N 130 GLN CB CG sing N N 131 GLN CB HB2 sing N N 132 GLN CB HB3 sing N N 133 GLN CG CD sing N N 134 GLN CG HG2 sing N N 135 GLN CG HG3 sing N N 136 GLN CD OE1 doub N N 137 GLN CD NE2 sing N N 138 GLN NE2 HE21 sing N N 139 GLN NE2 HE22 sing N N 140 GLN OXT HXT sing N N 141 GLU N CA sing N N 142 GLU N H sing N N 143 GLU N H2 sing N N 144 GLU CA C sing N N 145 GLU CA CB sing N N 146 GLU CA HA sing N N 147 GLU C O doub N N 148 GLU C OXT sing N N 149 GLU CB CG sing N N 150 GLU CB HB2 sing N N 151 GLU CB HB3 sing N N 152 GLU CG CD sing N N 153 GLU CG HG2 sing N N 154 GLU CG HG3 sing N N 155 GLU CD OE1 doub N N 156 GLU CD OE2 sing N N 157 GLU OE2 HE2 sing N N 158 GLU OXT HXT sing N N 159 GLY N CA sing N N 160 GLY N H sing N N 161 GLY N H2 sing N N 162 GLY CA C sing N N 163 GLY CA HA2 sing N N 164 GLY CA HA3 sing N N 165 GLY C O doub N N 166 GLY C OXT sing N N 167 GLY OXT HXT sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MET N CA sing N N 258 MET N H sing N N 259 MET N H2 sing N N 260 MET CA C sing N N 261 MET CA CB sing N N 262 MET CA HA sing N N 263 MET C O doub N N 264 MET C OXT sing N N 265 MET CB CG sing N N 266 MET CB HB2 sing N N 267 MET CB HB3 sing N N 268 MET CG SD sing N N 269 MET CG HG2 sing N N 270 MET CG HG3 sing N N 271 MET SD CE sing N N 272 MET CE HE1 sing N N 273 MET CE HE2 sing N N 274 MET CE HE3 sing N N 275 MET OXT HXT sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 TRP N CA sing N N 346 TRP N H sing N N 347 TRP N H2 sing N N 348 TRP CA C sing N N 349 TRP CA CB sing N N 350 TRP CA HA sing N N 351 TRP C O doub N N 352 TRP C OXT sing N N 353 TRP CB CG sing N N 354 TRP CB HB2 sing N N 355 TRP CB HB3 sing N N 356 TRP CG CD1 doub Y N 357 TRP CG CD2 sing Y N 358 TRP CD1 NE1 sing Y N 359 TRP CD1 HD1 sing N N 360 TRP CD2 CE2 doub Y N 361 TRP CD2 CE3 sing Y N 362 TRP NE1 CE2 sing Y N 363 TRP NE1 HE1 sing N N 364 TRP CE2 CZ2 sing Y N 365 TRP CE3 CZ3 doub Y N 366 TRP CE3 HE3 sing N N 367 TRP CZ2 CH2 doub Y N 368 TRP CZ2 HZ2 sing N N 369 TRP CZ3 CH2 sing Y N 370 TRP CZ3 HZ3 sing N N 371 TRP CH2 HH2 sing N N 372 TRP OXT HXT sing N N 373 TYR N CA sing N N 374 TYR N H sing N N 375 TYR N H2 sing N N 376 TYR CA C sing N N 377 TYR CA CB sing N N 378 TYR CA HA sing N N 379 TYR C O doub N N 380 TYR C OXT sing N N 381 TYR CB CG sing N N 382 TYR CB HB2 sing N N 383 TYR CB HB3 sing N N 384 TYR CG CD1 doub Y N 385 TYR CG CD2 sing Y N 386 TYR CD1 CE1 sing Y N 387 TYR CD1 HD1 sing N N 388 TYR CD2 CE2 doub Y N 389 TYR CD2 HD2 sing N N 390 TYR CE1 CZ doub Y N 391 TYR CE1 HE1 sing N N 392 TYR CE2 CZ sing Y N 393 TYR CE2 HE2 sing N N 394 TYR CZ OH sing N N 395 TYR OH HH sing N N 396 TYR OXT HXT sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 3 'MANGANESE (II) ION' MN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3DMA _pdbx_initial_refinement_model.details ? #