HEADER TRANSFERASE, TRANSPORT PROTEIN 03-MAY-13 3WAI TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL GLOBULAR DOMAIN OF TITLE 2 OLIGOSACCHARYLTRANSFERASE (AFAGLB-L, O29867_ARCFU) FROM ARCHAEOGLOBUS TITLE 3 FULGIDUS AS A MBP FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN, TRANSMEMBRANE COMPND 3 OLIGOSACCHARYL TRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES OF MBP 27-392, C-TERMINAL GLOBULAR DOMAIN COMPND 6 RESIDUES 500-868; COMPND 7 SYNONYM: MBP, AFAGLB-L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 83333, 224325; SOURCE 4 STRAIN: K12, DSM 4304; SOURCE 5 GENE: MALE, AGLB-L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET47B(+) KEYWDS OLIGOSACCHARYLTRANSFERASE, N-GLYCOSYLATION, MBP FUSION, GT-C, PROTEIN KEYWDS 2 B-OLIGOSACCHARYLTRANSFERASE, TRANSFERASE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MATSUMOTO,A.SHIMADA,D.KOHDA REVDAT 3 08-NOV-23 3WAI 1 SEQADV REVDAT 2 16-AUG-17 3WAI 1 SOURCE REMARK REVDAT 1 17-JUL-13 3WAI 0 JRNL AUTH S.MATSUMOTO,A.SHIMADA,D.KOHDA JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL GLOBULAR DOMAIN OF THE JRNL TITL 2 THIRD PARALOG OF THE ARCHAEOGLOBUS FULGIDUS JRNL TITL 3 OLIGOSACCHARYLTRANSFERASES JRNL REF BMC STRUCT.BIOL. V. 13 11 2013 JRNL REFN ESSN 1472-6807 JRNL PMID 23815857 JRNL DOI 10.1186/1472-6807-13-11 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX VERSION 1.8_1069 (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 57357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7965 - 5.2260 0.96 2668 138 0.1693 0.1810 REMARK 3 2 5.2260 - 4.1516 1.00 2697 152 0.1341 0.1518 REMARK 3 3 4.1516 - 3.6279 1.00 2692 143 0.1430 0.1640 REMARK 3 4 3.6279 - 3.2966 1.00 2662 154 0.1565 0.1826 REMARK 3 5 3.2966 - 3.0606 1.00 2679 123 0.1700 0.2064 REMARK 3 6 3.0606 - 2.8803 0.99 2665 138 0.1710 0.2198 REMARK 3 7 2.8803 - 2.7362 0.99 2629 139 0.1665 0.2226 REMARK 3 8 2.7362 - 2.6171 0.99 2619 139 0.1620 0.2357 REMARK 3 9 2.6171 - 2.5164 0.98 2605 142 0.1620 0.2112 REMARK 3 10 2.5164 - 2.4296 0.99 2618 131 0.1593 0.2259 REMARK 3 11 2.4296 - 2.3537 0.98 2581 165 0.1573 0.2011 REMARK 3 12 2.3537 - 2.2864 0.98 2598 149 0.1616 0.2135 REMARK 3 13 2.2864 - 2.2263 0.98 2587 134 0.1707 0.2326 REMARK 3 14 2.2263 - 2.1720 0.99 2626 139 0.1711 0.2207 REMARK 3 15 2.1720 - 2.1226 0.98 2568 133 0.1745 0.2146 REMARK 3 16 2.1226 - 2.0775 0.98 2621 136 0.1809 0.2445 REMARK 3 17 2.0775 - 2.0359 0.98 2559 134 0.1901 0.2633 REMARK 3 18 2.0359 - 1.9975 0.96 2551 115 0.1921 0.2238 REMARK 3 19 1.9975 - 1.9618 0.95 2486 144 0.2016 0.2476 REMARK 3 20 1.9618 - 1.9286 0.94 2490 132 0.2204 0.2829 REMARK 3 21 1.9286 - 1.8975 0.85 2255 121 0.2445 0.3040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5800 REMARK 3 ANGLE : 1.105 7894 REMARK 3 CHIRALITY : 0.083 842 REMARK 3 PLANARITY : 0.005 1012 REMARK 3 DIHEDRAL : 14.140 2098 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ -1:6) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7311 -34.8558 59.0091 REMARK 3 T TENSOR REMARK 3 T11: 0.8050 T22: 0.3468 REMARK 3 T33: 0.8601 T12: 0.0155 REMARK 3 T13: 0.0646 T23: -0.0973 REMARK 3 L TENSOR REMARK 3 L11: 0.2186 L22: 9.5191 REMARK 3 L33: 3.6214 L12: -1.2656 REMARK 3 L13: 0.8155 L23: -5.8481 REMARK 3 S TENSOR REMARK 3 S11: -0.0875 S12: 0.3613 S13: -0.8764 REMARK 3 S21: -0.8605 S22: 0.0764 S23: -0.5102 REMARK 3 S31: 1.5915 S32: 0.4864 S33: 0.0259 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 7:341) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0372 0.5397 61.8641 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.1628 REMARK 3 T33: 0.1128 T12: 0.0300 REMARK 3 T13: 0.0046 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.0428 L22: 2.8275 REMARK 3 L33: 0.6369 L12: 1.3049 REMARK 3 L13: 0.1176 L23: 0.2732 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.0337 S13: 0.0157 REMARK 3 S21: 0.2256 S22: 0.0011 S23: 0.0612 REMARK 3 S31: -0.0191 S32: -0.0095 S33: -0.0170 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 342:571) REMARK 3 ORIGIN FOR THE GROUP (A): 74.8635 -5.4740 41.8713 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.2178 REMARK 3 T33: 0.1417 T12: 0.0105 REMARK 3 T13: 0.0044 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 2.5464 L22: 1.6642 REMARK 3 L33: 3.0204 L12: -0.8644 REMARK 3 L13: -0.2772 L23: 1.9439 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: -0.2547 S13: -0.2118 REMARK 3 S21: 0.3625 S22: 0.0187 S23: -0.0339 REMARK 3 S31: 0.4109 S32: 0.1804 S33: -0.0559 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 572:777) REMARK 3 ORIGIN FOR THE GROUP (A): 100.1142 5.3608 55.4822 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.1383 REMARK 3 T33: 0.1370 T12: -0.0069 REMARK 3 T13: -0.0058 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.0404 L22: 2.9485 REMARK 3 L33: 0.6221 L12: -0.1437 REMARK 3 L13: -0.1498 L23: 0.2411 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0322 S13: 0.1856 REMARK 3 S21: -0.0112 S22: 0.0309 S23: 0.1489 REMARK 3 S31: -0.0415 S32: -0.0251 S33: -0.0258 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 778:868) REMARK 3 ORIGIN FOR THE GROUP (A): 116.8678 -10.5997 66.3014 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.2182 REMARK 3 T33: 0.2029 T12: -0.0380 REMARK 3 T13: -0.0496 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 1.4743 L22: 2.0726 REMARK 3 L33: 2.6204 L12: -0.1465 REMARK 3 L13: 0.7130 L23: -0.2992 REMARK 3 S TENSOR REMARK 3 S11: 0.1551 S12: -0.2177 S13: -0.2883 REMARK 3 S21: 0.3434 S22: -0.1339 S23: -0.2853 REMARK 3 S31: 0.2168 S32: 0.1899 S33: -0.0171 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000096091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58383 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.897 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: PDB ENTRY 1PEB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CAPSO, 33% PEG 3350, PH 9.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 90.11950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 90.11950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 TYR A 171 REMARK 465 GLU A 172 REMARK 465 ASN A 173 REMARK 465 GLY A 174 REMARK 465 LYS A 175 REMARK 465 TYR A 176 REMARK 465 ASP A 177 REMARK 465 ILE A 178 REMARK 465 LYS A 179 REMARK 465 TYR A 524 REMARK 465 LEU A 525 REMARK 465 GLN A 526 REMARK 465 LEU A 527 REMARK 465 TYR A 528 REMARK 465 PRO A 529 REMARK 465 THR A 530 REMARK 465 PRO A 531 REMARK 465 GLN A 532 REMARK 465 SER A 533 REMARK 465 ASN A 534 REMARK 465 LYS A 535 REMARK 465 GLU A 536 REMARK 465 PRO A 537 REMARK 465 PHE A 538 REMARK 465 SER A 539 REMARK 465 TYR A 540 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 309 O HOH A 1022 1.81 REMARK 500 OH TYR A 832 O HOH A 1346 1.90 REMARK 500 O LYS A 170 O HOH A 1350 1.94 REMARK 500 O GLU A 3 O HOH A 1377 2.00 REMARK 500 NE2 GLN A 811 O HOH A 1013 2.01 REMARK 500 NE2 GLN A 335 O HOH A 1399 2.04 REMARK 500 O HOH A 1368 O HOH A 1417 2.08 REMARK 500 O HOH A 935 O HOH A 1325 2.10 REMARK 500 OE1 GLU A 288 O HOH A 1348 2.10 REMARK 500 OD1 ASN A 500 O HOH A 1352 2.10 REMARK 500 O HOH A 1060 O HOH A 1220 2.12 REMARK 500 O HOH A 1420 O HOH A 1422 2.12 REMARK 500 O HOH A 948 O HOH A 1272 2.13 REMARK 500 O HOH A 1401 O HOH A 1418 2.14 REMARK 500 OE2 GLU A 591 O HOH A 1238 2.15 REMARK 500 OE2 GLU A 45 NH2 ARG A 66 2.16 REMARK 500 NH1 ARG A 354 O HOH A 1425 2.16 REMARK 500 O HOH A 1327 O HOH A 1356 2.16 REMARK 500 N ASP A 180 O HOH A 1423 2.17 REMARK 500 O HOH A 1285 O HOH A 1394 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 122 76.14 -153.93 REMARK 500 TYR A 283 -55.49 -122.83 REMARK 500 GLU A 543 29.59 -75.98 REMARK 500 THR A 616 -101.39 -111.53 REMARK 500 ASN A 829 33.96 -142.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 99 ASN A 100 -126.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WAJ RELATED DB: PDB REMARK 900 RELATED ID: 3WAK RELATED DB: PDB DBREF 3WAI A 1 366 UNP P0AEX9 MALE_ECOLI 27 392 DBREF 3WAI A 500 868 UNP O29867 O29867_ARCFU 500 868 SEQADV 3WAI GLY A -3 UNP P0AEX9 EXPRESSION TAG SEQADV 3WAI PRO A -2 UNP P0AEX9 EXPRESSION TAG SEQADV 3WAI GLY A -1 UNP P0AEX9 EXPRESSION TAG SEQADV 3WAI MET A 0 UNP P0AEX9 EXPRESSION TAG SEQRES 1 A 739 GLY PRO GLY MET LYS ILE GLU GLU GLY LYS LEU VAL ILE SEQRES 2 A 739 TRP ILE ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU SEQRES 3 A 739 VAL GLY LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL SEQRES 4 A 739 THR VAL GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO SEQRES 5 A 739 GLN VAL ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE SEQRES 6 A 739 TRP ALA HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY SEQRES 7 A 739 LEU LEU ALA GLU ILE THR PRO ASP LYS ALA PHE GLN ASP SEQRES 8 A 739 LYS LEU TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN SEQRES 9 A 739 GLY LYS LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SEQRES 10 A 739 SER LEU ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO SEQRES 11 A 739 LYS THR TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU SEQRES 12 A 739 LYS ALA LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN SEQRES 13 A 739 GLU PRO TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY SEQRES 14 A 739 GLY TYR ALA PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE SEQRES 15 A 739 LYS ASP VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY SEQRES 16 A 739 LEU THR PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET SEQRES 17 A 739 ASN ALA ASP THR ASP TYR SER ILE ALA GLU ALA ALA PHE SEQRES 18 A 739 ASN LYS GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP SEQRES 19 A 739 ALA TRP SER ASN ILE ASP THR SER LYS VAL ASN TYR GLY SEQRES 20 A 739 VAL THR VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS SEQRES 21 A 739 PRO PHE VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SEQRES 22 A 739 SER PRO ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN SEQRES 23 A 739 TYR LEU LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS SEQRES 24 A 739 ASP LYS PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU SEQRES 25 A 739 GLU GLU LEU ALA LYS ASP PRO ARG ILE ALA ALA THR MET SEQRES 26 A 739 GLU ASN ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO SEQRES 27 A 739 GLN MET SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL SEQRES 28 A 739 ILE ASN ALA ALA SER GLY ARG GLN THR VAL ASP GLU ALA SEQRES 29 A 739 LEU LYS ASP ALA GLN THR ASN LYS GLN TRP TYR ASP ALA SEQRES 30 A 739 LEU THR TRP MET ARG GLU ASN THR PRO ASP GLY GLU LYS SEQRES 31 A 739 TYR ASP GLU TYR TYR LEU GLN LEU TYR PRO THR PRO GLN SEQRES 32 A 739 SER ASN LYS GLU PRO PHE SER TYR PRO PHE GLU THR TYR SEQRES 33 A 739 GLY VAL ILE SER TRP TRP ASP TYR GLY HIS TRP ILE GLU SEQRES 34 A 739 ALA VAL ALA HIS ARG MET PRO ILE ALA ASN PRO PHE GLN SEQRES 35 A 739 ALA GLY ILE GLY ASN LYS TYR ASN ASN VAL PRO GLY ALA SEQRES 36 A 739 SER SER PHE PHE THR ALA GLU ASN GLU SER TYR ALA GLU SEQRES 37 A 739 PHE VAL ALA GLU LYS LEU ASN VAL LYS TYR VAL VAL SER SEQRES 38 A 739 ASP ILE GLU MET GLU THR GLY LYS TYR TYR ALA MET ALA SEQRES 39 A 739 VAL TRP ALA GLU GLY ASP LEU PRO LEU ALA GLU LYS TYR SEQRES 40 A 739 TYR GLY GLY TYR PHE TYR TYR SER PRO THR GLY THR PHE SEQRES 41 A 739 GLY TYR ALA ASN SER GLN TRP ASP ILE PRO LEU ASN SER SEQRES 42 A 739 ILE ILE ILE PRO LEU ARG ILE PRO SER GLU LEU TYR TYR SEQRES 43 A 739 SER THR MET GLU ALA LYS LEU HIS LEU PHE ASP GLY SER SEQRES 44 A 739 GLY LEU SER HIS TYR ARG MET ILE TYR GLU SER ASP TYR SEQRES 45 A 739 PRO ALA GLU TRP LYS SER TYR SER SER GLN VAL ASN LEU SEQRES 46 A 739 ASN ASN GLU SER GLN VAL LEU GLN THR ALA LEU TYR GLU SEQRES 47 A 739 ALA VAL MET ARG ALA ARG TYR GLY VAL SER PRO THR MET SEQRES 48 A 739 GLY THR GLN GLU VAL LEU TYR LYS TYR ALA TYR THR GLN SEQRES 49 A 739 LEU TYR GLU LYS LYS MET GLY ILE PRO VAL LYS ILE ALA SEQRES 50 A 739 PRO SER GLY TYR VAL LYS ILE PHE GLU ARG VAL LYS GLY SEQRES 51 A 739 ALA VAL VAL THR GLY LYS VAL SER ALA ASN VAL THR GLU SEQRES 52 A 739 VAL SER VAL ASN ALA THR ILE LYS THR ASN GLN ASN ARG SEQRES 53 A 739 THR PHE GLU TYR TRP GLN THR VAL GLU VAL LYS ASN GLY SEQRES 54 A 739 THR TYR THR VAL VAL LEU PRO TYR SER HIS ASN SER ASP SEQRES 55 A 739 TYR PRO VAL LYS PRO ILE THR PRO TYR HIS ILE LYS ALA SEQRES 56 A 739 GLY ASN VAL VAL LYS GLU ILE THR ILE TYR GLU SER GLN SEQRES 57 A 739 VAL GLN ASN GLY GLU ILE ILE GLN LEU ASP LEU FORMUL 2 HOH *553(H2 O) HELIX 1 1 GLY A 16 GLY A 32 1 17 HELIX 2 2 LYS A 42 ALA A 51 1 10 HELIX 3 3 ARG A 66 SER A 73 1 8 HELIX 4 4 ASP A 82 ASP A 87 1 6 HELIX 5 5 TYR A 90 ALA A 96 1 7 HELIX 6 6 THR A 128 GLU A 130 5 3 HELIX 7 7 GLU A 131 LYS A 142 1 12 HELIX 8 8 GLU A 153 ALA A 162 1 10 HELIX 9 9 ASN A 185 ASN A 201 1 17 HELIX 10 10 ASP A 209 LYS A 219 1 11 HELIX 11 11 GLY A 228 TRP A 230 5 3 HELIX 12 12 ALA A 231 LYS A 239 1 9 HELIX 13 13 ASN A 272 TYR A 283 1 12 HELIX 14 14 THR A 286 LYS A 297 1 12 HELIX 15 15 LEU A 304 ALA A 312 1 9 HELIX 16 16 ASP A 314 GLY A 327 1 14 HELIX 17 17 ASN A 332 SER A 352 1 21 HELIX 18 18 THR A 356 THR A 514 1 26 HELIX 19 19 ASP A 516 GLU A 522 1 7 HELIX 20 20 TRP A 550 ASP A 552 5 3 HELIX 21 21 TYR A 553 VAL A 560 1 8 HELIX 22 22 GLY A 583 THR A 589 1 7 HELIX 23 23 ASN A 592 LEU A 603 1 12 HELIX 24 24 ILE A 612 THR A 616 1 5 HELIX 25 25 LYS A 618 GLY A 628 1 11 HELIX 26 26 LEU A 630 TYR A 637 5 8 HELIX 27 27 SER A 654 ILE A 658 5 5 HELIX 28 28 SER A 671 SER A 676 1 6 HELIX 29 29 THR A 677 LEU A 684 1 8 HELIX 30 30 PRO A 702 SER A 709 1 8 HELIX 31 31 ASN A 716 ARG A 733 1 18 HELIX 32 32 THR A 739 TYR A 755 1 17 HELIX 33 33 TYR A 755 GLY A 760 1 6 HELIX 34 34 TYR A 854 GLY A 861 1 8 SHEET 1 A 6 LYS A 34 GLU A 38 0 SHEET 2 A 6 LYS A 6 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 A 6 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 A 6 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 A 6 TYR A 106 GLU A 111 -1 N ILE A 108 O LEU A 262 SHEET 6 A 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 B 5 LYS A 34 GLU A 38 0 SHEET 2 B 5 LYS A 6 TRP A 10 1 N ILE A 9 O GLU A 38 SHEET 3 B 5 ILE A 59 ALA A 63 1 O PHE A 61 N TRP A 10 SHEET 4 B 5 PHE A 258 ILE A 266 -1 O GLY A 265 N ILE A 60 SHEET 5 B 5 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 C 2 ARG A 98 TYR A 99 0 SHEET 2 C 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 D 4 SER A 145 LEU A 147 0 SHEET 2 D 4 THR A 222 ASN A 227 1 O ALA A 223 N SER A 145 SHEET 3 D 4 SER A 114 ASN A 118 -1 N ASN A 118 O ALA A 223 SHEET 4 D 4 TYR A 242 THR A 245 -1 O THR A 245 N LEU A 115 SHEET 1 E 2 THR A 249 PHE A 250 0 SHEET 2 E 2 GLN A 253 PRO A 254 -1 O GLN A 253 N PHE A 250 SHEET 1 F 2 GLY A 546 VAL A 547 0 SHEET 2 F 2 MET A 564 PRO A 565 1 O MET A 564 N VAL A 547 SHEET 1 G 3 TYR A 607 ASP A 611 0 SHEET 2 G 3 VAL A 771 ARG A 776 -1 O LYS A 772 N SER A 610 SHEET 3 G 3 TYR A 693 GLU A 698 -1 N TYR A 697 O ILE A 773 SHEET 1 H 3 PHE A 649 ALA A 652 0 SHEET 2 H 3 TYR A 640 TYR A 643 -1 N TYR A 642 O GLY A 650 SHEET 3 H 3 ILE A 663 ILE A 664 -1 O ILE A 663 N TYR A 643 SHEET 1 I 3 THR A 819 LEU A 824 0 SHEET 2 I 3 ALA A 780 LYS A 785 -1 N VAL A 782 O VAL A 822 SHEET 3 I 3 ILE A 863 GLN A 865 1 O ILE A 864 N VAL A 781 SHEET 1 J 3 THR A 806 GLU A 814 0 SHEET 2 J 3 GLU A 792 LYS A 800 -1 N ALA A 797 O TYR A 809 SHEET 3 J 3 LYS A 835 PRO A 836 -1 O LYS A 835 N LYS A 800 SHEET 1 K 4 THR A 806 GLU A 814 0 SHEET 2 K 4 GLU A 792 LYS A 800 -1 N ALA A 797 O TYR A 809 SHEET 3 K 4 TYR A 840 ALA A 844 -1 O HIS A 841 N ASN A 796 SHEET 4 K 4 VAL A 847 ILE A 851 -1 O LYS A 849 N ILE A 842 CISPEP 1 VAL A 181 GLY A 182 0 -22.25 CRYST1 180.239 52.930 78.418 90.00 90.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005548 0.000000 0.000068 0.00000 SCALE2 0.000000 0.018893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012753 0.00000