data_3WNC # _entry.id 3WNC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3WNC pdb_00003wnc 10.2210/pdb3wnc/pdb RCSB RCSB096551 ? ? WWPDB D_1000096551 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ELF . unspecified PDB 3WNB . unspecified PDB 3WND . unspecified TargetTrack RSGI-my_001000402.1 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3WNC _pdbx_database_status.recvd_initial_deposition_date 2013-12-08 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yanagisawa, T.' 1 'Ishii, R.' 2 'Fukunaga, R.' 3 'Sengoku, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).' _citation.journal_abbrev 'J. Struct. Funct. Genomics' _citation.journal_volume 16 _citation.page_first 25 _citation.page_last 41 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN 1570-0267 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25618148 _citation.pdbx_database_id_DOI 10.1007/s10969-015-9193-6 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yanagisawa, T.' 1 ? primary 'Ishii, R.' 2 ? primary 'Hikida, Y.' 3 ? primary 'Fukunaga, R.' 4 ? primary 'Sengoku, T.' 5 ? primary 'Sekine, S.' 6 ? primary 'Yokoyama, S.' 7 ? # _cell.entry_id 3WNC _cell.length_a 62.020 _cell.length_b 108.700 _cell.length_c 58.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WNC _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein translation elongation factor 1A' 40774.637 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 389 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Translation factor EF-Pyl' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHSSGLVPRGSH(MSE)ANVAIIGTEKSGRTSLAANLGKKGTSSDIT(MSE)YNNDKEGRN(MSE)VF VDAHSYPKTLKSLITALNISDIAVLCIPPQGLDAHTGECIIALDLLGFKHGIIALTRSDSTH(MSE)HAIDELKAKLKVI TSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISK DKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVG(MSE)RLKNVQAKDIERGFIISDKEIVTTDYTLECTVSKFTKKI EPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFSK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMANVAIIGTEKSGRTSLAANLGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITA LNISDIAVLCIPPQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA KNPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQ SHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDKEIVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILV DGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier RSGI-my_001000402.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MSE n 1 22 ALA n 1 23 ASN n 1 24 VAL n 1 25 ALA n 1 26 ILE n 1 27 ILE n 1 28 GLY n 1 29 THR n 1 30 GLU n 1 31 LYS n 1 32 SER n 1 33 GLY n 1 34 ARG n 1 35 THR n 1 36 SER n 1 37 LEU n 1 38 ALA n 1 39 ALA n 1 40 ASN n 1 41 LEU n 1 42 GLY n 1 43 LYS n 1 44 LYS n 1 45 GLY n 1 46 THR n 1 47 SER n 1 48 SER n 1 49 ASP n 1 50 ILE n 1 51 THR n 1 52 MSE n 1 53 TYR n 1 54 ASN n 1 55 ASN n 1 56 ASP n 1 57 LYS n 1 58 GLU n 1 59 GLY n 1 60 ARG n 1 61 ASN n 1 62 MSE n 1 63 VAL n 1 64 PHE n 1 65 VAL n 1 66 ASP n 1 67 ALA n 1 68 HIS n 1 69 SER n 1 70 TYR n 1 71 PRO n 1 72 LYS n 1 73 THR n 1 74 LEU n 1 75 LYS n 1 76 SER n 1 77 LEU n 1 78 ILE n 1 79 THR n 1 80 ALA n 1 81 LEU n 1 82 ASN n 1 83 ILE n 1 84 SER n 1 85 ASP n 1 86 ILE n 1 87 ALA n 1 88 VAL n 1 89 LEU n 1 90 CYS n 1 91 ILE n 1 92 PRO n 1 93 PRO n 1 94 GLN n 1 95 GLY n 1 96 LEU n 1 97 ASP n 1 98 ALA n 1 99 HIS n 1 100 THR n 1 101 GLY n 1 102 GLU n 1 103 CYS n 1 104 ILE n 1 105 ILE n 1 106 ALA n 1 107 LEU n 1 108 ASP n 1 109 LEU n 1 110 LEU n 1 111 GLY n 1 112 PHE n 1 113 LYS n 1 114 HIS n 1 115 GLY n 1 116 ILE n 1 117 ILE n 1 118 ALA n 1 119 LEU n 1 120 THR n 1 121 ARG n 1 122 SER n 1 123 ASP n 1 124 SER n 1 125 THR n 1 126 HIS n 1 127 MSE n 1 128 HIS n 1 129 ALA n 1 130 ILE n 1 131 ASP n 1 132 GLU n 1 133 LEU n 1 134 LYS n 1 135 ALA n 1 136 LYS n 1 137 LEU n 1 138 LYS n 1 139 VAL n 1 140 ILE n 1 141 THR n 1 142 SER n 1 143 GLY n 1 144 THR n 1 145 VAL n 1 146 LEU n 1 147 GLN n 1 148 ASP n 1 149 TRP n 1 150 GLU n 1 151 CYS n 1 152 ILE n 1 153 SER n 1 154 LEU n 1 155 ASN n 1 156 THR n 1 157 ASN n 1 158 LYS n 1 159 SER n 1 160 ALA n 1 161 LYS n 1 162 ASN n 1 163 PRO n 1 164 PHE n 1 165 GLU n 1 166 GLY n 1 167 VAL n 1 168 ASP n 1 169 GLU n 1 170 LEU n 1 171 LYS n 1 172 ALA n 1 173 ARG n 1 174 ILE n 1 175 ASN n 1 176 GLU n 1 177 VAL n 1 178 ALA n 1 179 GLU n 1 180 LYS n 1 181 ILE n 1 182 GLU n 1 183 ALA n 1 184 GLU n 1 185 ASN n 1 186 ALA n 1 187 GLU n 1 188 LEU n 1 189 ASN n 1 190 SER n 1 191 LEU n 1 192 PRO n 1 193 ALA n 1 194 ARG n 1 195 ILE n 1 196 PHE n 1 197 ILE n 1 198 ASP n 1 199 HIS n 1 200 ALA n 1 201 PHE n 1 202 ASN n 1 203 VAL n 1 204 THR n 1 205 GLY n 1 206 LYS n 1 207 GLY n 1 208 CYS n 1 209 VAL n 1 210 VAL n 1 211 LEU n 1 212 GLY n 1 213 VAL n 1 214 VAL n 1 215 LYS n 1 216 GLN n 1 217 GLY n 1 218 ILE n 1 219 SER n 1 220 LYS n 1 221 ASP n 1 222 LYS n 1 223 ASP n 1 224 LYS n 1 225 THR n 1 226 LYS n 1 227 ILE n 1 228 PHE n 1 229 PRO n 1 230 LEU n 1 231 ASP n 1 232 ARG n 1 233 ASP n 1 234 ILE n 1 235 GLU n 1 236 ILE n 1 237 ARG n 1 238 SER n 1 239 ILE n 1 240 GLN n 1 241 SER n 1 242 HIS n 1 243 ASP n 1 244 VAL n 1 245 ASP n 1 246 ILE n 1 247 ASP n 1 248 SER n 1 249 ALA n 1 250 PRO n 1 251 ALA n 1 252 GLY n 1 253 THR n 1 254 ARG n 1 255 VAL n 1 256 GLY n 1 257 MSE n 1 258 ARG n 1 259 LEU n 1 260 LYS n 1 261 ASN n 1 262 VAL n 1 263 GLN n 1 264 ALA n 1 265 LYS n 1 266 ASP n 1 267 ILE n 1 268 GLU n 1 269 ARG n 1 270 GLY n 1 271 PHE n 1 272 ILE n 1 273 ILE n 1 274 SER n 1 275 ASP n 1 276 LYS n 1 277 GLU n 1 278 ILE n 1 279 VAL n 1 280 THR n 1 281 THR n 1 282 ASP n 1 283 TYR n 1 284 THR n 1 285 LEU n 1 286 GLU n 1 287 CYS n 1 288 THR n 1 289 VAL n 1 290 SER n 1 291 LYS n 1 292 PHE n 1 293 THR n 1 294 LYS n 1 295 LYS n 1 296 ILE n 1 297 GLU n 1 298 PRO n 1 299 ALA n 1 300 SER n 1 301 VAL n 1 302 LEU n 1 303 HIS n 1 304 LEU n 1 305 PHE n 1 306 VAL n 1 307 GLY n 1 308 LEU n 1 309 GLN n 1 310 SER n 1 311 GLU n 1 312 PRO n 1 313 VAL n 1 314 ARG n 1 315 VAL n 1 316 GLU n 1 317 LYS n 1 318 ILE n 1 319 LEU n 1 320 VAL n 1 321 ASP n 1 322 GLY n 1 323 ASN n 1 324 GLU n 1 325 VAL n 1 326 GLU n 1 327 GLU n 1 328 ALA n 1 329 LYS n 1 330 PRO n 1 331 GLY n 1 332 SER n 1 333 THR n 1 334 CYS n 1 335 VAL n 1 336 LEU n 1 337 GLU n 1 338 LEU n 1 339 SER n 1 340 GLY n 1 341 ASN n 1 342 LYS n 1 343 LYS n 1 344 LEU n 1 345 ALA n 1 346 TYR n 1 347 SER n 1 348 LYS n 1 349 GLN n 1 350 ASP n 1 351 ARG n 1 352 PHE n 1 353 LEU n 1 354 LEU n 1 355 ALA n 1 356 ASN n 1 357 LEU n 1 358 ASP n 1 359 LEU n 1 360 THR n 1 361 GLN n 1 362 ARG n 1 363 PHE n 1 364 ALA n 1 365 ALA n 1 366 TYR n 1 367 GLY n 1 368 PHE n 1 369 SER n 1 370 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MM_1309 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain JCM9314 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanosarcina mazei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2209 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28c _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8PXB3_METMA _struct_ref.pdbx_db_accession Q8PXB3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MANVAIIGTEKSGRTSLAANLGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIPPQGLDAHT GECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK IEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLK NVQAKDIERGFIISDKEIVTTDYTLECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSG NKKLAYSKQDRFLLANLDLTQRFAAYGFSK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3WNC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 370 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8PXB3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 350 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 350 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3WNC MSE A 1 ? UNP Q8PXB3 ? ? 'expression tag' -19 1 1 3WNC GLY A 2 ? UNP Q8PXB3 ? ? 'expression tag' -18 2 1 3WNC SER A 3 ? UNP Q8PXB3 ? ? 'expression tag' -17 3 1 3WNC SER A 4 ? UNP Q8PXB3 ? ? 'expression tag' -16 4 1 3WNC HIS A 5 ? UNP Q8PXB3 ? ? 'expression tag' -15 5 1 3WNC HIS A 6 ? UNP Q8PXB3 ? ? 'expression tag' -14 6 1 3WNC HIS A 7 ? UNP Q8PXB3 ? ? 'expression tag' -13 7 1 3WNC HIS A 8 ? UNP Q8PXB3 ? ? 'expression tag' -12 8 1 3WNC HIS A 9 ? UNP Q8PXB3 ? ? 'expression tag' -11 9 1 3WNC HIS A 10 ? UNP Q8PXB3 ? ? 'expression tag' -10 10 1 3WNC SER A 11 ? UNP Q8PXB3 ? ? 'expression tag' -9 11 1 3WNC SER A 12 ? UNP Q8PXB3 ? ? 'expression tag' -8 12 1 3WNC GLY A 13 ? UNP Q8PXB3 ? ? 'expression tag' -7 13 1 3WNC LEU A 14 ? UNP Q8PXB3 ? ? 'expression tag' -6 14 1 3WNC VAL A 15 ? UNP Q8PXB3 ? ? 'expression tag' -5 15 1 3WNC PRO A 16 ? UNP Q8PXB3 ? ? 'expression tag' -4 16 1 3WNC ARG A 17 ? UNP Q8PXB3 ? ? 'expression tag' -3 17 1 3WNC GLY A 18 ? UNP Q8PXB3 ? ? 'expression tag' -2 18 1 3WNC SER A 19 ? UNP Q8PXB3 ? ? 'expression tag' -1 19 1 3WNC HIS A 20 ? UNP Q8PXB3 ? ? 'expression tag' 0 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3WNC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 49.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.8 _exptl_crystal_grow.pdbx_details 'Na/Acetate, Na/Citrate, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-10-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Numerical link type Si(111) double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97943 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97943 # _reflns.entry_id 3WNC _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 31405 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.137 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 11.1 _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3WNC _refine.ls_number_reflns_obs 31357 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1792483.87 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.49 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.172 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.172 _refine.ls_R_factor_R_free 0.217 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1555 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 25.0 _refine.aniso_B[1][1] -4.54 _refine.aniso_B[2][2] -5.09 _refine.aniso_B[3][3] 9.63 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.385375 _refine.solvent_model_param_bsol 55.6405 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3WNB _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3WNC _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.18 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.21 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2765 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 389 _refine_hist.number_atoms_total 3183 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 33.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d 0.009 ? ? ? ? 'X-RAY DIFFRACTION' c_angle_deg 1.6 ? ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d 25.0 ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d 0.92 ? ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it 3.98 1.50 ? ? ? 'X-RAY DIFFRACTION' c_mcangle_it 4.87 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scbond_it 6.36 2.00 ? ? ? 'X-RAY DIFFRACTION' c_scangle_it 8.33 2.50 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 4550 _refine_ls_shell.R_factor_R_work 0.233 _refine_ls_shell.percent_reflns_obs 91.0 _refine_ls_shell.R_factor_R_free 0.273 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 4.3 _refine_ls_shell.number_reflns_R_free 202 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 gdp2.param gdp2.top # _struct.entry_id 3WNC _struct.title 'Crystal structure of EF-Pyl in complex with GDP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WNC _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text ;Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, tRNA, elongation factor, pyrrolysine, translation ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 33 ? ASN A 40 ? GLY A 13 ASN A 20 1 ? 8 HELX_P HELX_P2 2 THR A 73 ? ILE A 83 ? THR A 53 ILE A 63 1 ? 11 HELX_P HELX_P3 3 ASP A 97 ? LEU A 110 ? ASP A 77 LEU A 90 1 ? 14 HELX_P HELX_P4 4 ARG A 121 ? THR A 125 ? ARG A 101 THR A 105 5 ? 5 HELX_P HELX_P5 5 HIS A 126 ? THR A 141 ? HIS A 106 THR A 121 1 ? 16 HELX_P HELX_P6 6 GLY A 166 ? LEU A 188 ? GLY A 146 LEU A 168 1 ? 23 HELX_P HELX_P7 7 ASN A 189 ? LEU A 191 ? ASN A 169 LEU A 171 5 ? 3 HELX_P HELX_P8 8 GLN A 263 ? ILE A 267 ? GLN A 243 ILE A 247 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 20 C ? ? ? 1_555 A MSE 21 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 21 C ? ? ? 1_555 A ALA 22 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale3 covale both ? A THR 51 C ? ? ? 1_555 A MSE 52 N ? ? A THR 31 A MSE 32 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A MSE 52 C ? ? ? 1_555 A TYR 53 N ? ? A MSE 32 A TYR 33 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A ASN 61 C ? ? ? 1_555 A MSE 62 N ? ? A ASN 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A MSE 62 C ? ? ? 1_555 A VAL 63 N ? ? A MSE 42 A VAL 43 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? A HIS 126 C ? ? ? 1_555 A MSE 127 N ? ? A HIS 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? A MSE 127 C ? ? ? 1_555 A HIS 128 N ? ? A MSE 107 A HIS 108 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale9 covale both ? A GLY 256 C ? ? ? 1_555 A MSE 257 N ? ? A GLY 236 A MSE 237 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? A MSE 257 C ? ? ? 1_555 A ARG 258 N ? ? A MSE 237 A ARG 238 1_555 ? ? ? ? ? ? ? 1.333 ? ? metalc1 metalc ? ? A THR 35 OG1 ? ? ? 1_555 C MG . MG ? ? A THR 15 A MG 402 1_555 ? ? ? ? ? ? ? 2.870 ? ? metalc2 metalc ? ? B GDP . O3B ? ? ? 1_555 C MG . MG ? ? A GDP 401 A MG 402 1_555 ? ? ? ? ? ? ? 2.941 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 402 A HOH 875 1_555 ? ? ? ? ? ? ? 2.304 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 70 A . ? TYR 50 A PRO 71 A ? PRO 51 A 1 0.65 2 PHE 228 A . ? PHE 208 A PRO 229 A ? PRO 209 A 1 0.64 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 8 ? C ? 2 ? D ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel D 6 7 ? anti-parallel D 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 43 ? SER A 47 ? LYS A 23 SER A 27 A 2 THR A 51 ? ASN A 55 ? THR A 31 ASN A 35 A 3 ASN A 61 ? ASP A 66 ? ASN A 41 ASP A 46 A 4 MSE A 21 ? GLY A 28 ? MSE A 1 GLY A 8 A 5 ILE A 86 ? CYS A 90 ? ILE A 66 CYS A 70 A 6 HIS A 114 ? LEU A 119 ? HIS A 94 LEU A 99 A 7 GLU A 150 ? SER A 153 ? GLU A 130 SER A 133 B 1 VAL A 244 ? ILE A 246 ? VAL A 224 ILE A 226 B 2 ARG A 232 ? SER A 241 ? ARG A 212 SER A 221 B 3 ARG A 254 ? LYS A 260 ? ARG A 234 LYS A 240 B 4 GLY A 207 ? GLN A 216 ? GLY A 187 GLN A 196 B 5 ARG A 194 ? VAL A 203 ? ARG A 174 VAL A 183 B 6 ILE A 272 ? SER A 274 ? ILE A 252 SER A 254 B 7 LYS A 224 ? PHE A 228 ? LYS A 204 PHE A 208 B 8 ARG A 232 ? SER A 241 ? ARG A 212 SER A 221 C 1 ILE A 218 ? LYS A 220 ? ILE A 198 LYS A 200 C 2 SER A 248 ? PRO A 250 ? SER A 228 PRO A 230 D 1 ASN A 323 ? VAL A 325 ? ASN A 303 VAL A 305 D 2 GLN A 309 ? VAL A 320 ? GLN A 289 VAL A 300 D 3 THR A 333 ? TYR A 346 ? THR A 313 TYR A 326 D 4 ILE A 278 ? VAL A 289 ? ILE A 258 VAL A 269 D 5 PHE A 363 ? SER A 369 ? PHE A 343 SER A 349 D 6 PHE A 352 ? ALA A 355 ? PHE A 332 ALA A 335 D 7 VAL A 301 ? VAL A 306 ? VAL A 281 VAL A 286 D 8 GLN A 309 ? VAL A 320 ? GLN A 289 VAL A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 43 ? N LYS A 23 O ASN A 54 ? O ASN A 34 A 2 3 N ASN A 55 ? N ASN A 35 O MSE A 62 ? O MSE A 42 A 3 4 O VAL A 65 ? O VAL A 45 N VAL A 24 ? N VAL A 4 A 4 5 N ILE A 27 ? N ILE A 7 O CYS A 90 ? O CYS A 70 A 5 6 N LEU A 89 ? N LEU A 69 O ALA A 118 ? O ALA A 98 A 6 7 N ILE A 117 ? N ILE A 97 O GLU A 150 ? O GLU A 130 B 1 2 O VAL A 244 ? O VAL A 224 N SER A 241 ? N SER A 221 B 2 3 N GLN A 240 ? N GLN A 220 O GLY A 256 ? O GLY A 236 B 3 4 O MSE A 257 ? O MSE A 237 N VAL A 210 ? N VAL A 190 B 4 5 O VAL A 209 ? O VAL A 189 N PHE A 201 ? N PHE A 181 B 5 6 N ILE A 195 ? N ILE A 175 O ILE A 273 ? O ILE A 253 B 6 7 O ILE A 272 ? O ILE A 252 N PHE A 228 ? N PHE A 208 B 7 8 N THR A 225 ? N THR A 205 O ILE A 234 ? O ILE A 214 C 1 2 N SER A 219 ? N SER A 199 O ALA A 249 ? O ALA A 229 D 1 2 O ASN A 323 ? O ASN A 303 N VAL A 320 ? N VAL A 300 D 2 3 N ARG A 314 ? N ARG A 294 O SER A 339 ? O SER A 319 D 3 4 O LEU A 338 ? O LEU A 318 N TYR A 283 ? N TYR A 263 D 4 5 N GLU A 286 ? N GLU A 266 O PHE A 368 ? O PHE A 348 D 5 6 O GLY A 367 ? O GLY A 347 N PHE A 352 ? N PHE A 332 D 6 7 O ALA A 355 ? O ALA A 335 N HIS A 303 ? N HIS A 283 D 7 8 N LEU A 304 ? N LEU A 284 O GLU A 311 ? O GLU A 291 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDP 401 ? 15 'BINDING SITE FOR RESIDUE GDP A 401' AC2 Software A MG 402 ? 6 'BINDING SITE FOR RESIDUE MG A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 THR A 29 ? THR A 9 . ? 1_555 ? 2 AC1 15 LYS A 31 ? LYS A 11 . ? 1_555 ? 3 AC1 15 SER A 32 ? SER A 12 . ? 1_555 ? 4 AC1 15 GLY A 33 ? GLY A 13 . ? 1_555 ? 5 AC1 15 ARG A 34 ? ARG A 14 . ? 1_555 ? 6 AC1 15 THR A 35 ? THR A 15 . ? 1_555 ? 7 AC1 15 SER A 36 ? SER A 16 . ? 1_555 ? 8 AC1 15 ARG A 121 ? ARG A 101 . ? 1_555 ? 9 AC1 15 ASP A 123 ? ASP A 103 . ? 1_555 ? 10 AC1 15 ASN A 155 ? ASN A 135 . ? 1_555 ? 11 AC1 15 THR A 156 ? THR A 136 . ? 1_555 ? 12 AC1 15 MG C . ? MG A 402 . ? 1_555 ? 13 AC1 15 HOH D . ? HOH A 648 . ? 1_555 ? 14 AC1 15 HOH D . ? HOH A 873 . ? 1_555 ? 15 AC1 15 HOH D . ? HOH A 880 . ? 1_555 ? 16 AC2 6 ARG A 34 ? ARG A 14 . ? 1_555 ? 17 AC2 6 THR A 35 ? THR A 15 . ? 1_555 ? 18 AC2 6 ASP A 66 ? ASP A 46 . ? 1_555 ? 19 AC2 6 HIS A 68 ? HIS A 48 . ? 1_555 ? 20 AC2 6 GDP B . ? GDP A 401 . ? 1_555 ? 21 AC2 6 HOH D . ? HOH A 875 . ? 1_555 ? # _database_PDB_matrix.entry_id 3WNC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3WNC _atom_sites.fract_transf_matrix[1][1] 0.016124 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009200 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017126 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 -10 HIS HIS A . n A 1 11 SER 11 -9 -9 SER SER A . n A 1 12 SER 12 -8 -8 SER SER A . n A 1 13 GLY 13 -7 -7 GLY GLY A . n A 1 14 LEU 14 -6 -6 LEU LEU A . n A 1 15 VAL 15 -5 -5 VAL VAL A . n A 1 16 PRO 16 -4 -4 PRO PRO A . n A 1 17 ARG 17 -3 -3 ARG ARG A . n A 1 18 GLY 18 -2 -2 GLY GLY A . n A 1 19 SER 19 -1 -1 SER SER A . n A 1 20 HIS 20 0 0 HIS HIS A . n A 1 21 MSE 21 1 1 MSE MSE A . n A 1 22 ALA 22 2 2 ALA ALA A . n A 1 23 ASN 23 3 3 ASN ASN A . n A 1 24 VAL 24 4 4 VAL VAL A . n A 1 25 ALA 25 5 5 ALA ALA A . n A 1 26 ILE 26 6 6 ILE ILE A . n A 1 27 ILE 27 7 7 ILE ILE A . n A 1 28 GLY 28 8 8 GLY GLY A . n A 1 29 THR 29 9 9 THR THR A . n A 1 30 GLU 30 10 10 GLU GLU A . n A 1 31 LYS 31 11 11 LYS LYS A . n A 1 32 SER 32 12 12 SER SER A . n A 1 33 GLY 33 13 13 GLY GLY A . n A 1 34 ARG 34 14 14 ARG ARG A . n A 1 35 THR 35 15 15 THR THR A . n A 1 36 SER 36 16 16 SER SER A . n A 1 37 LEU 37 17 17 LEU LEU A . n A 1 38 ALA 38 18 18 ALA ALA A . n A 1 39 ALA 39 19 19 ALA ALA A . n A 1 40 ASN 40 20 20 ASN ASN A . n A 1 41 LEU 41 21 21 LEU LEU A . n A 1 42 GLY 42 22 22 GLY GLY A . n A 1 43 LYS 43 23 23 LYS LYS A . n A 1 44 LYS 44 24 24 LYS LYS A . n A 1 45 GLY 45 25 25 GLY GLY A . n A 1 46 THR 46 26 26 THR THR A . n A 1 47 SER 47 27 27 SER SER A . n A 1 48 SER 48 28 28 SER SER A . n A 1 49 ASP 49 29 29 ASP ASP A . n A 1 50 ILE 50 30 30 ILE ILE A . n A 1 51 THR 51 31 31 THR THR A . n A 1 52 MSE 52 32 32 MSE MSE A . n A 1 53 TYR 53 33 33 TYR TYR A . n A 1 54 ASN 54 34 34 ASN ASN A . n A 1 55 ASN 55 35 35 ASN ASN A . n A 1 56 ASP 56 36 36 ASP ASP A . n A 1 57 LYS 57 37 37 LYS LYS A . n A 1 58 GLU 58 38 38 GLU GLU A . n A 1 59 GLY 59 39 39 GLY GLY A . n A 1 60 ARG 60 40 40 ARG ARG A . n A 1 61 ASN 61 41 41 ASN ASN A . n A 1 62 MSE 62 42 42 MSE MSE A . n A 1 63 VAL 63 43 43 VAL VAL A . n A 1 64 PHE 64 44 44 PHE PHE A . n A 1 65 VAL 65 45 45 VAL VAL A . n A 1 66 ASP 66 46 46 ASP ASP A . n A 1 67 ALA 67 47 47 ALA ALA A . n A 1 68 HIS 68 48 48 HIS HIS A . n A 1 69 SER 69 49 49 SER SER A . n A 1 70 TYR 70 50 50 TYR TYR A . n A 1 71 PRO 71 51 51 PRO CPR A . n A 1 72 LYS 72 52 52 LYS LYS A . n A 1 73 THR 73 53 53 THR THR A . n A 1 74 LEU 74 54 54 LEU LEU A . n A 1 75 LYS 75 55 55 LYS LYS A . n A 1 76 SER 76 56 56 SER SER A . n A 1 77 LEU 77 57 57 LEU LEU A . n A 1 78 ILE 78 58 58 ILE ILE A . n A 1 79 THR 79 59 59 THR THR A . n A 1 80 ALA 80 60 60 ALA ALA A . n A 1 81 LEU 81 61 61 LEU LEU A . n A 1 82 ASN 82 62 62 ASN ASN A . n A 1 83 ILE 83 63 63 ILE ILE A . n A 1 84 SER 84 64 64 SER SER A . n A 1 85 ASP 85 65 65 ASP ASP A . n A 1 86 ILE 86 66 66 ILE ILE A . n A 1 87 ALA 87 67 67 ALA ALA A . n A 1 88 VAL 88 68 68 VAL VAL A . n A 1 89 LEU 89 69 69 LEU LEU A . n A 1 90 CYS 90 70 70 CYS CYS A . n A 1 91 ILE 91 71 71 ILE ILE A . n A 1 92 PRO 92 72 72 PRO PRO A . n A 1 93 PRO 93 73 73 PRO PRO A . n A 1 94 GLN 94 74 74 GLN GLN A . n A 1 95 GLY 95 75 75 GLY GLY A . n A 1 96 LEU 96 76 76 LEU LEU A . n A 1 97 ASP 97 77 77 ASP ASP A . n A 1 98 ALA 98 78 78 ALA ALA A . n A 1 99 HIS 99 79 79 HIS HIS A . n A 1 100 THR 100 80 80 THR THR A . n A 1 101 GLY 101 81 81 GLY GLY A . n A 1 102 GLU 102 82 82 GLU GLU A . n A 1 103 CYS 103 83 83 CYS CYS A . n A 1 104 ILE 104 84 84 ILE ILE A . n A 1 105 ILE 105 85 85 ILE ILE A . n A 1 106 ALA 106 86 86 ALA ALA A . n A 1 107 LEU 107 87 87 LEU LEU A . n A 1 108 ASP 108 88 88 ASP ASP A . n A 1 109 LEU 109 89 89 LEU LEU A . n A 1 110 LEU 110 90 90 LEU LEU A . n A 1 111 GLY 111 91 91 GLY GLY A . n A 1 112 PHE 112 92 92 PHE PHE A . n A 1 113 LYS 113 93 93 LYS LYS A . n A 1 114 HIS 114 94 94 HIS HIS A . n A 1 115 GLY 115 95 95 GLY GLY A . n A 1 116 ILE 116 96 96 ILE ILE A . n A 1 117 ILE 117 97 97 ILE ILE A . n A 1 118 ALA 118 98 98 ALA ALA A . n A 1 119 LEU 119 99 99 LEU LEU A . n A 1 120 THR 120 100 100 THR THR A . n A 1 121 ARG 121 101 101 ARG ARG A . n A 1 122 SER 122 102 102 SER SER A . n A 1 123 ASP 123 103 103 ASP ASP A . n A 1 124 SER 124 104 104 SER SER A . n A 1 125 THR 125 105 105 THR THR A . n A 1 126 HIS 126 106 106 HIS HIS A . n A 1 127 MSE 127 107 107 MSE MSE A . n A 1 128 HIS 128 108 108 HIS HIS A . n A 1 129 ALA 129 109 109 ALA ALA A . n A 1 130 ILE 130 110 110 ILE ILE A . n A 1 131 ASP 131 111 111 ASP ASP A . n A 1 132 GLU 132 112 112 GLU GLU A . n A 1 133 LEU 133 113 113 LEU LEU A . n A 1 134 LYS 134 114 114 LYS LYS A . n A 1 135 ALA 135 115 115 ALA ALA A . n A 1 136 LYS 136 116 116 LYS LYS A . n A 1 137 LEU 137 117 117 LEU LEU A . n A 1 138 LYS 138 118 118 LYS LYS A . n A 1 139 VAL 139 119 119 VAL VAL A . n A 1 140 ILE 140 120 120 ILE ILE A . n A 1 141 THR 141 121 121 THR THR A . n A 1 142 SER 142 122 122 SER SER A . n A 1 143 GLY 143 123 123 GLY GLY A . n A 1 144 THR 144 124 124 THR THR A . n A 1 145 VAL 145 125 125 VAL VAL A . n A 1 146 LEU 146 126 126 LEU LEU A . n A 1 147 GLN 147 127 127 GLN GLN A . n A 1 148 ASP 148 128 128 ASP ASP A . n A 1 149 TRP 149 129 129 TRP TRP A . n A 1 150 GLU 150 130 130 GLU GLU A . n A 1 151 CYS 151 131 131 CYS CYS A . n A 1 152 ILE 152 132 132 ILE ILE A . n A 1 153 SER 153 133 133 SER SER A . n A 1 154 LEU 154 134 134 LEU LEU A . n A 1 155 ASN 155 135 135 ASN ASN A . n A 1 156 THR 156 136 136 THR THR A . n A 1 157 ASN 157 137 137 ASN ASN A . n A 1 158 LYS 158 138 138 LYS LYS A . n A 1 159 SER 159 139 139 SER SER A . n A 1 160 ALA 160 140 140 ALA ALA A . n A 1 161 LYS 161 141 141 LYS LYS A . n A 1 162 ASN 162 142 142 ASN ASN A . n A 1 163 PRO 163 143 143 PRO PRO A . n A 1 164 PHE 164 144 144 PHE PHE A . n A 1 165 GLU 165 145 145 GLU GLU A . n A 1 166 GLY 166 146 146 GLY GLY A . n A 1 167 VAL 167 147 147 VAL VAL A . n A 1 168 ASP 168 148 148 ASP ASP A . n A 1 169 GLU 169 149 149 GLU GLU A . n A 1 170 LEU 170 150 150 LEU LEU A . n A 1 171 LYS 171 151 151 LYS LYS A . n A 1 172 ALA 172 152 152 ALA ALA A . n A 1 173 ARG 173 153 153 ARG ARG A . n A 1 174 ILE 174 154 154 ILE ILE A . n A 1 175 ASN 175 155 155 ASN ASN A . n A 1 176 GLU 176 156 156 GLU GLU A . n A 1 177 VAL 177 157 157 VAL VAL A . n A 1 178 ALA 178 158 158 ALA ALA A . n A 1 179 GLU 179 159 159 GLU GLU A . n A 1 180 LYS 180 160 160 LYS LYS A . n A 1 181 ILE 181 161 161 ILE ILE A . n A 1 182 GLU 182 162 162 GLU GLU A . n A 1 183 ALA 183 163 163 ALA ALA A . n A 1 184 GLU 184 164 164 GLU GLU A . n A 1 185 ASN 185 165 165 ASN ASN A . n A 1 186 ALA 186 166 166 ALA ALA A . n A 1 187 GLU 187 167 167 GLU GLU A . n A 1 188 LEU 188 168 168 LEU LEU A . n A 1 189 ASN 189 169 169 ASN ASN A . n A 1 190 SER 190 170 170 SER SER A . n A 1 191 LEU 191 171 171 LEU LEU A . n A 1 192 PRO 192 172 172 PRO PRO A . n A 1 193 ALA 193 173 173 ALA ALA A . n A 1 194 ARG 194 174 174 ARG ARG A . n A 1 195 ILE 195 175 175 ILE ILE A . n A 1 196 PHE 196 176 176 PHE PHE A . n A 1 197 ILE 197 177 177 ILE ILE A . n A 1 198 ASP 198 178 178 ASP ASP A . n A 1 199 HIS 199 179 179 HIS HIS A . n A 1 200 ALA 200 180 180 ALA ALA A . n A 1 201 PHE 201 181 181 PHE PHE A . n A 1 202 ASN 202 182 182 ASN ASN A . n A 1 203 VAL 203 183 183 VAL VAL A . n A 1 204 THR 204 184 184 THR THR A . n A 1 205 GLY 205 185 185 GLY GLY A . n A 1 206 LYS 206 186 186 LYS LYS A . n A 1 207 GLY 207 187 187 GLY GLY A . n A 1 208 CYS 208 188 188 CYS CYS A . n A 1 209 VAL 209 189 189 VAL VAL A . n A 1 210 VAL 210 190 190 VAL VAL A . n A 1 211 LEU 211 191 191 LEU LEU A . n A 1 212 GLY 212 192 192 GLY GLY A . n A 1 213 VAL 213 193 193 VAL VAL A . n A 1 214 VAL 214 194 194 VAL VAL A . n A 1 215 LYS 215 195 195 LYS LYS A . n A 1 216 GLN 216 196 196 GLN GLN A . n A 1 217 GLY 217 197 197 GLY GLY A . n A 1 218 ILE 218 198 198 ILE ILE A . n A 1 219 SER 219 199 199 SER SER A . n A 1 220 LYS 220 200 200 LYS LYS A . n A 1 221 ASP 221 201 201 ASP ASP A . n A 1 222 LYS 222 202 202 LYS LYS A . n A 1 223 ASP 223 203 203 ASP ASP A . n A 1 224 LYS 224 204 204 LYS LYS A . n A 1 225 THR 225 205 205 THR THR A . n A 1 226 LYS 226 206 206 LYS LYS A . n A 1 227 ILE 227 207 207 ILE ILE A . n A 1 228 PHE 228 208 208 PHE PHE A . n A 1 229 PRO 229 209 209 PRO CPR A . n A 1 230 LEU 230 210 210 LEU LEU A . n A 1 231 ASP 231 211 211 ASP ASP A . n A 1 232 ARG 232 212 212 ARG ARG A . n A 1 233 ASP 233 213 213 ASP ASP A . n A 1 234 ILE 234 214 214 ILE ILE A . n A 1 235 GLU 235 215 215 GLU GLU A . n A 1 236 ILE 236 216 216 ILE ILE A . n A 1 237 ARG 237 217 217 ARG ARG A . n A 1 238 SER 238 218 218 SER SER A . n A 1 239 ILE 239 219 219 ILE ILE A . n A 1 240 GLN 240 220 220 GLN GLN A . n A 1 241 SER 241 221 221 SER SER A . n A 1 242 HIS 242 222 222 HIS HIS A . n A 1 243 ASP 243 223 223 ASP ASP A . n A 1 244 VAL 244 224 224 VAL VAL A . n A 1 245 ASP 245 225 225 ASP ASP A . n A 1 246 ILE 246 226 226 ILE ILE A . n A 1 247 ASP 247 227 227 ASP ASP A . n A 1 248 SER 248 228 228 SER SER A . n A 1 249 ALA 249 229 229 ALA ALA A . n A 1 250 PRO 250 230 230 PRO PRO A . n A 1 251 ALA 251 231 231 ALA ALA A . n A 1 252 GLY 252 232 232 GLY GLY A . n A 1 253 THR 253 233 233 THR THR A . n A 1 254 ARG 254 234 234 ARG ARG A . n A 1 255 VAL 255 235 235 VAL VAL A . n A 1 256 GLY 256 236 236 GLY GLY A . n A 1 257 MSE 257 237 237 MSE MSE A . n A 1 258 ARG 258 238 238 ARG ARG A . n A 1 259 LEU 259 239 239 LEU LEU A . n A 1 260 LYS 260 240 240 LYS LYS A . n A 1 261 ASN 261 241 241 ASN ASN A . n A 1 262 VAL 262 242 242 VAL VAL A . n A 1 263 GLN 263 243 243 GLN GLN A . n A 1 264 ALA 264 244 244 ALA ALA A . n A 1 265 LYS 265 245 245 LYS LYS A . n A 1 266 ASP 266 246 246 ASP ASP A . n A 1 267 ILE 267 247 247 ILE ILE A . n A 1 268 GLU 268 248 248 GLU GLU A . n A 1 269 ARG 269 249 249 ARG ARG A . n A 1 270 GLY 270 250 250 GLY GLY A . n A 1 271 PHE 271 251 251 PHE PHE A . n A 1 272 ILE 272 252 252 ILE ILE A . n A 1 273 ILE 273 253 253 ILE ILE A . n A 1 274 SER 274 254 254 SER SER A . n A 1 275 ASP 275 255 255 ASP ASP A . n A 1 276 LYS 276 256 256 LYS LYS A . n A 1 277 GLU 277 257 257 GLU GLU A . n A 1 278 ILE 278 258 258 ILE ILE A . n A 1 279 VAL 279 259 259 VAL VAL A . n A 1 280 THR 280 260 260 THR THR A . n A 1 281 THR 281 261 261 THR THR A . n A 1 282 ASP 282 262 262 ASP ASP A . n A 1 283 TYR 283 263 263 TYR TYR A . n A 1 284 THR 284 264 264 THR THR A . n A 1 285 LEU 285 265 265 LEU LEU A . n A 1 286 GLU 286 266 266 GLU GLU A . n A 1 287 CYS 287 267 267 CYS CYS A . n A 1 288 THR 288 268 268 THR THR A . n A 1 289 VAL 289 269 269 VAL VAL A . n A 1 290 SER 290 270 270 SER SER A . n A 1 291 LYS 291 271 271 LYS LYS A . n A 1 292 PHE 292 272 272 PHE PHE A . n A 1 293 THR 293 273 273 THR THR A . n A 1 294 LYS 294 274 274 LYS LYS A . n A 1 295 LYS 295 275 275 LYS LYS A . n A 1 296 ILE 296 276 276 ILE ILE A . n A 1 297 GLU 297 277 277 GLU GLU A . n A 1 298 PRO 298 278 278 PRO PRO A . n A 1 299 ALA 299 279 279 ALA ALA A . n A 1 300 SER 300 280 280 SER SER A . n A 1 301 VAL 301 281 281 VAL VAL A . n A 1 302 LEU 302 282 282 LEU LEU A . n A 1 303 HIS 303 283 283 HIS HIS A . n A 1 304 LEU 304 284 284 LEU LEU A . n A 1 305 PHE 305 285 285 PHE PHE A . n A 1 306 VAL 306 286 286 VAL VAL A . n A 1 307 GLY 307 287 287 GLY GLY A . n A 1 308 LEU 308 288 288 LEU LEU A . n A 1 309 GLN 309 289 289 GLN GLN A . n A 1 310 SER 310 290 290 SER SER A . n A 1 311 GLU 311 291 291 GLU GLU A . n A 1 312 PRO 312 292 292 PRO PRO A . n A 1 313 VAL 313 293 293 VAL VAL A . n A 1 314 ARG 314 294 294 ARG ARG A . n A 1 315 VAL 315 295 295 VAL VAL A . n A 1 316 GLU 316 296 296 GLU GLU A . n A 1 317 LYS 317 297 297 LYS LYS A . n A 1 318 ILE 318 298 298 ILE ILE A . n A 1 319 LEU 319 299 299 LEU LEU A . n A 1 320 VAL 320 300 300 VAL VAL A . n A 1 321 ASP 321 301 301 ASP ASP A . n A 1 322 GLY 322 302 302 GLY GLY A . n A 1 323 ASN 323 303 303 ASN ASN A . n A 1 324 GLU 324 304 304 GLU GLU A . n A 1 325 VAL 325 305 305 VAL VAL A . n A 1 326 GLU 326 306 306 GLU GLU A . n A 1 327 GLU 327 307 307 GLU GLU A . n A 1 328 ALA 328 308 308 ALA ALA A . n A 1 329 LYS 329 309 309 LYS LYS A . n A 1 330 PRO 330 310 310 PRO PRO A . n A 1 331 GLY 331 311 311 GLY GLY A . n A 1 332 SER 332 312 312 SER SER A . n A 1 333 THR 333 313 313 THR THR A . n A 1 334 CYS 334 314 314 CYS CYS A . n A 1 335 VAL 335 315 315 VAL VAL A . n A 1 336 LEU 336 316 316 LEU LEU A . n A 1 337 GLU 337 317 317 GLU GLU A . n A 1 338 LEU 338 318 318 LEU LEU A . n A 1 339 SER 339 319 319 SER SER A . n A 1 340 GLY 340 320 320 GLY GLY A . n A 1 341 ASN 341 321 321 ASN ASN A . n A 1 342 LYS 342 322 322 LYS LYS A . n A 1 343 LYS 343 323 323 LYS LYS A . n A 1 344 LEU 344 324 324 LEU LEU A . n A 1 345 ALA 345 325 325 ALA ALA A . n A 1 346 TYR 346 326 326 TYR TYR A . n A 1 347 SER 347 327 327 SER SER A . n A 1 348 LYS 348 328 328 LYS LYS A . n A 1 349 GLN 349 329 329 GLN GLN A . n A 1 350 ASP 350 330 330 ASP ASP A . n A 1 351 ARG 351 331 331 ARG ARG A . n A 1 352 PHE 352 332 332 PHE PHE A . n A 1 353 LEU 353 333 333 LEU LEU A . n A 1 354 LEU 354 334 334 LEU LEU A . n A 1 355 ALA 355 335 335 ALA ALA A . n A 1 356 ASN 356 336 336 ASN ASN A . n A 1 357 LEU 357 337 337 LEU LEU A . n A 1 358 ASP 358 338 338 ASP ASP A . n A 1 359 LEU 359 339 339 LEU LEU A . n A 1 360 THR 360 340 340 THR THR A . n A 1 361 GLN 361 341 341 GLN GLN A . n A 1 362 ARG 362 342 342 ARG ARG A . n A 1 363 PHE 363 343 343 PHE PHE A . n A 1 364 ALA 364 344 344 ALA ALA A . n A 1 365 ALA 365 345 345 ALA ALA A . n A 1 366 TYR 366 346 346 TYR TYR A . n A 1 367 GLY 367 347 347 GLY GLY A . n A 1 368 PHE 368 348 348 PHE PHE A . n A 1 369 SER 369 349 349 SER SER A . n A 1 370 LYS 370 350 350 LYS LYS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 401 1 GDP GDP A . C 3 MG 1 402 1 MG MG A . D 4 HOH 1 501 1 HOH HOH A . D 4 HOH 2 502 2 HOH HOH A . D 4 HOH 3 503 3 HOH HOH A . D 4 HOH 4 504 4 HOH HOH A . D 4 HOH 5 505 5 HOH HOH A . D 4 HOH 6 506 6 HOH HOH A . D 4 HOH 7 507 7 HOH HOH A . D 4 HOH 8 508 8 HOH HOH A . D 4 HOH 9 509 9 HOH HOH A . D 4 HOH 10 510 10 HOH HOH A . D 4 HOH 11 511 11 HOH HOH A . D 4 HOH 12 512 12 HOH HOH A . D 4 HOH 13 513 13 HOH HOH A . D 4 HOH 14 514 15 HOH HOH A . D 4 HOH 15 515 16 HOH HOH A . D 4 HOH 16 516 17 HOH HOH A . D 4 HOH 17 517 18 HOH HOH A . D 4 HOH 18 518 19 HOH HOH A . D 4 HOH 19 519 20 HOH HOH A . D 4 HOH 20 520 21 HOH HOH A . D 4 HOH 21 521 22 HOH HOH A . D 4 HOH 22 522 23 HOH HOH A . D 4 HOH 23 523 24 HOH HOH A . D 4 HOH 24 524 25 HOH HOH A . D 4 HOH 25 525 26 HOH HOH A . D 4 HOH 26 526 27 HOH HOH A . D 4 HOH 27 527 28 HOH HOH A . D 4 HOH 28 528 29 HOH HOH A . D 4 HOH 29 529 30 HOH HOH A . D 4 HOH 30 530 31 HOH HOH A . D 4 HOH 31 531 32 HOH HOH A . D 4 HOH 32 532 33 HOH HOH A . D 4 HOH 33 533 34 HOH HOH A . D 4 HOH 34 534 35 HOH HOH A . D 4 HOH 35 535 36 HOH HOH A . D 4 HOH 36 536 37 HOH HOH A . D 4 HOH 37 537 38 HOH HOH A . D 4 HOH 38 538 40 HOH HOH A . D 4 HOH 39 539 41 HOH HOH A . D 4 HOH 40 540 42 HOH HOH A . D 4 HOH 41 541 43 HOH HOH A . D 4 HOH 42 542 44 HOH HOH A . D 4 HOH 43 543 45 HOH HOH A . D 4 HOH 44 544 46 HOH HOH A . D 4 HOH 45 545 47 HOH HOH A . D 4 HOH 46 546 48 HOH HOH A . D 4 HOH 47 547 49 HOH HOH A . D 4 HOH 48 548 50 HOH HOH A . D 4 HOH 49 549 51 HOH HOH A . D 4 HOH 50 550 52 HOH HOH A . D 4 HOH 51 551 53 HOH HOH A . D 4 HOH 52 552 54 HOH HOH A . D 4 HOH 53 553 55 HOH HOH A . D 4 HOH 54 554 56 HOH HOH A . D 4 HOH 55 555 58 HOH HOH A . D 4 HOH 56 556 59 HOH HOH A . D 4 HOH 57 557 60 HOH HOH A . D 4 HOH 58 558 61 HOH HOH A . D 4 HOH 59 559 62 HOH HOH A . D 4 HOH 60 560 63 HOH HOH A . D 4 HOH 61 561 65 HOH HOH A . D 4 HOH 62 562 66 HOH HOH A . D 4 HOH 63 563 67 HOH HOH A . D 4 HOH 64 564 68 HOH HOH A . D 4 HOH 65 565 69 HOH HOH A . D 4 HOH 66 566 70 HOH HOH A . D 4 HOH 67 567 71 HOH HOH A . D 4 HOH 68 568 72 HOH HOH A . D 4 HOH 69 569 74 HOH HOH A . D 4 HOH 70 570 75 HOH HOH A . D 4 HOH 71 571 77 HOH HOH A . D 4 HOH 72 572 78 HOH HOH A . D 4 HOH 73 573 79 HOH HOH A . D 4 HOH 74 574 80 HOH HOH A . D 4 HOH 75 575 82 HOH HOH A . D 4 HOH 76 576 83 HOH HOH A . D 4 HOH 77 577 84 HOH HOH A . D 4 HOH 78 578 85 HOH HOH A . D 4 HOH 79 579 86 HOH HOH A . D 4 HOH 80 580 87 HOH HOH A . D 4 HOH 81 581 88 HOH HOH A . D 4 HOH 82 582 89 HOH HOH A . D 4 HOH 83 583 90 HOH HOH A . D 4 HOH 84 584 91 HOH HOH A . D 4 HOH 85 585 92 HOH HOH A . D 4 HOH 86 586 93 HOH HOH A . D 4 HOH 87 587 96 HOH HOH A . D 4 HOH 88 588 99 HOH HOH A . D 4 HOH 89 589 100 HOH HOH A . D 4 HOH 90 590 102 HOH HOH A . D 4 HOH 91 591 104 HOH HOH A . D 4 HOH 92 592 105 HOH HOH A . D 4 HOH 93 593 106 HOH HOH A . D 4 HOH 94 594 107 HOH HOH A . D 4 HOH 95 595 108 HOH HOH A . D 4 HOH 96 596 109 HOH HOH A . D 4 HOH 97 597 110 HOH HOH A . D 4 HOH 98 598 112 HOH HOH A . D 4 HOH 99 599 113 HOH HOH A . D 4 HOH 100 600 114 HOH HOH A . D 4 HOH 101 601 115 HOH HOH A . D 4 HOH 102 602 116 HOH HOH A . D 4 HOH 103 603 117 HOH HOH A . D 4 HOH 104 604 118 HOH HOH A . D 4 HOH 105 605 119 HOH HOH A . D 4 HOH 106 606 120 HOH HOH A . D 4 HOH 107 607 121 HOH HOH A . D 4 HOH 108 608 122 HOH HOH A . D 4 HOH 109 609 123 HOH HOH A . D 4 HOH 110 610 124 HOH HOH A . D 4 HOH 111 611 125 HOH HOH A . D 4 HOH 112 612 126 HOH HOH A . D 4 HOH 113 613 127 HOH HOH A . D 4 HOH 114 614 128 HOH HOH A . D 4 HOH 115 615 129 HOH HOH A . D 4 HOH 116 616 130 HOH HOH A . D 4 HOH 117 617 131 HOH HOH A . D 4 HOH 118 618 132 HOH HOH A . D 4 HOH 119 619 133 HOH HOH A . D 4 HOH 120 620 134 HOH HOH A . D 4 HOH 121 621 135 HOH HOH A . D 4 HOH 122 622 136 HOH HOH A . D 4 HOH 123 623 137 HOH HOH A . D 4 HOH 124 624 138 HOH HOH A . D 4 HOH 125 625 139 HOH HOH A . D 4 HOH 126 626 140 HOH HOH A . D 4 HOH 127 627 141 HOH HOH A . D 4 HOH 128 628 142 HOH HOH A . D 4 HOH 129 629 143 HOH HOH A . D 4 HOH 130 630 144 HOH HOH A . D 4 HOH 131 631 145 HOH HOH A . D 4 HOH 132 632 146 HOH HOH A . D 4 HOH 133 633 147 HOH HOH A . D 4 HOH 134 634 148 HOH HOH A . D 4 HOH 135 635 149 HOH HOH A . D 4 HOH 136 636 150 HOH HOH A . D 4 HOH 137 637 151 HOH HOH A . D 4 HOH 138 638 152 HOH HOH A . D 4 HOH 139 639 153 HOH HOH A . D 4 HOH 140 640 154 HOH HOH A . D 4 HOH 141 641 155 HOH HOH A . D 4 HOH 142 642 156 HOH HOH A . D 4 HOH 143 643 157 HOH HOH A . D 4 HOH 144 644 158 HOH HOH A . D 4 HOH 145 645 159 HOH HOH A . D 4 HOH 146 646 160 HOH HOH A . D 4 HOH 147 647 161 HOH HOH A . D 4 HOH 148 648 162 HOH HOH A . D 4 HOH 149 649 163 HOH HOH A . D 4 HOH 150 650 164 HOH HOH A . D 4 HOH 151 651 165 HOH HOH A . D 4 HOH 152 652 166 HOH HOH A . D 4 HOH 153 653 167 HOH HOH A . D 4 HOH 154 654 168 HOH HOH A . D 4 HOH 155 655 169 HOH HOH A . D 4 HOH 156 656 170 HOH HOH A . D 4 HOH 157 657 171 HOH HOH A . D 4 HOH 158 658 172 HOH HOH A . D 4 HOH 159 659 173 HOH HOH A . D 4 HOH 160 660 174 HOH HOH A . D 4 HOH 161 661 175 HOH HOH A . D 4 HOH 162 662 176 HOH HOH A . D 4 HOH 163 663 177 HOH HOH A . D 4 HOH 164 664 178 HOH HOH A . D 4 HOH 165 665 179 HOH HOH A . D 4 HOH 166 666 180 HOH HOH A . D 4 HOH 167 667 181 HOH HOH A . D 4 HOH 168 668 182 HOH HOH A . D 4 HOH 169 669 183 HOH HOH A . D 4 HOH 170 670 185 HOH HOH A . D 4 HOH 171 671 186 HOH HOH A . D 4 HOH 172 672 187 HOH HOH A . D 4 HOH 173 673 188 HOH HOH A . D 4 HOH 174 674 189 HOH HOH A . D 4 HOH 175 675 190 HOH HOH A . D 4 HOH 176 676 191 HOH HOH A . D 4 HOH 177 677 192 HOH HOH A . D 4 HOH 178 678 193 HOH HOH A . D 4 HOH 179 679 194 HOH HOH A . D 4 HOH 180 680 195 HOH HOH A . D 4 HOH 181 681 196 HOH HOH A . D 4 HOH 182 682 197 HOH HOH A . D 4 HOH 183 683 198 HOH HOH A . D 4 HOH 184 684 199 HOH HOH A . D 4 HOH 185 685 200 HOH HOH A . D 4 HOH 186 686 201 HOH HOH A . D 4 HOH 187 687 202 HOH HOH A . D 4 HOH 188 688 204 HOH HOH A . D 4 HOH 189 689 205 HOH HOH A . D 4 HOH 190 690 206 HOH HOH A . D 4 HOH 191 691 207 HOH HOH A . D 4 HOH 192 692 208 HOH HOH A . D 4 HOH 193 693 209 HOH HOH A . D 4 HOH 194 694 210 HOH HOH A . D 4 HOH 195 695 211 HOH HOH A . D 4 HOH 196 696 213 HOH HOH A . D 4 HOH 197 697 214 HOH HOH A . D 4 HOH 198 698 215 HOH HOH A . D 4 HOH 199 699 216 HOH HOH A . D 4 HOH 200 700 217 HOH HOH A . D 4 HOH 201 701 218 HOH HOH A . D 4 HOH 202 702 219 HOH HOH A . D 4 HOH 203 703 220 HOH HOH A . D 4 HOH 204 704 221 HOH HOH A . D 4 HOH 205 705 222 HOH HOH A . D 4 HOH 206 706 223 HOH HOH A . D 4 HOH 207 707 224 HOH HOH A . D 4 HOH 208 708 225 HOH HOH A . D 4 HOH 209 709 226 HOH HOH A . D 4 HOH 210 710 227 HOH HOH A . D 4 HOH 211 711 228 HOH HOH A . D 4 HOH 212 712 229 HOH HOH A . D 4 HOH 213 713 230 HOH HOH A . D 4 HOH 214 714 231 HOH HOH A . D 4 HOH 215 715 232 HOH HOH A . D 4 HOH 216 716 233 HOH HOH A . D 4 HOH 217 717 234 HOH HOH A . D 4 HOH 218 718 235 HOH HOH A . D 4 HOH 219 719 236 HOH HOH A . D 4 HOH 220 720 237 HOH HOH A . D 4 HOH 221 721 238 HOH HOH A . D 4 HOH 222 722 239 HOH HOH A . D 4 HOH 223 723 240 HOH HOH A . D 4 HOH 224 724 241 HOH HOH A . D 4 HOH 225 725 242 HOH HOH A . D 4 HOH 226 726 243 HOH HOH A . D 4 HOH 227 727 244 HOH HOH A . D 4 HOH 228 728 245 HOH HOH A . D 4 HOH 229 729 246 HOH HOH A . D 4 HOH 230 730 247 HOH HOH A . D 4 HOH 231 731 248 HOH HOH A . D 4 HOH 232 732 249 HOH HOH A . D 4 HOH 233 733 250 HOH HOH A . D 4 HOH 234 734 251 HOH HOH A . D 4 HOH 235 735 252 HOH HOH A . D 4 HOH 236 736 253 HOH HOH A . D 4 HOH 237 737 254 HOH HOH A . D 4 HOH 238 738 255 HOH HOH A . D 4 HOH 239 739 256 HOH HOH A . D 4 HOH 240 740 257 HOH HOH A . D 4 HOH 241 741 258 HOH HOH A . D 4 HOH 242 742 259 HOH HOH A . D 4 HOH 243 743 260 HOH HOH A . D 4 HOH 244 744 261 HOH HOH A . D 4 HOH 245 745 262 HOH HOH A . D 4 HOH 246 746 263 HOH HOH A . D 4 HOH 247 747 264 HOH HOH A . D 4 HOH 248 748 265 HOH HOH A . D 4 HOH 249 749 266 HOH HOH A . D 4 HOH 250 750 267 HOH HOH A . D 4 HOH 251 751 268 HOH HOH A . D 4 HOH 252 752 269 HOH HOH A . D 4 HOH 253 753 270 HOH HOH A . D 4 HOH 254 754 271 HOH HOH A . D 4 HOH 255 755 272 HOH HOH A . D 4 HOH 256 756 273 HOH HOH A . D 4 HOH 257 757 274 HOH HOH A . D 4 HOH 258 758 275 HOH HOH A . D 4 HOH 259 759 276 HOH HOH A . D 4 HOH 260 760 277 HOH HOH A . D 4 HOH 261 761 278 HOH HOH A . D 4 HOH 262 762 279 HOH HOH A . D 4 HOH 263 763 280 HOH HOH A . D 4 HOH 264 764 281 HOH HOH A . D 4 HOH 265 765 282 HOH HOH A . D 4 HOH 266 766 283 HOH HOH A . D 4 HOH 267 767 284 HOH HOH A . D 4 HOH 268 768 285 HOH HOH A . D 4 HOH 269 769 286 HOH HOH A . D 4 HOH 270 770 287 HOH HOH A . D 4 HOH 271 771 288 HOH HOH A . D 4 HOH 272 772 289 HOH HOH A . D 4 HOH 273 773 290 HOH HOH A . D 4 HOH 274 774 291 HOH HOH A . D 4 HOH 275 775 292 HOH HOH A . D 4 HOH 276 776 293 HOH HOH A . D 4 HOH 277 777 294 HOH HOH A . D 4 HOH 278 778 295 HOH HOH A . D 4 HOH 279 779 296 HOH HOH A . D 4 HOH 280 780 297 HOH HOH A . D 4 HOH 281 781 298 HOH HOH A . D 4 HOH 282 782 299 HOH HOH A . D 4 HOH 283 783 300 HOH HOH A . D 4 HOH 284 784 301 HOH HOH A . D 4 HOH 285 785 302 HOH HOH A . D 4 HOH 286 786 303 HOH HOH A . D 4 HOH 287 787 304 HOH HOH A . D 4 HOH 288 788 305 HOH HOH A . D 4 HOH 289 789 306 HOH HOH A . D 4 HOH 290 790 307 HOH HOH A . D 4 HOH 291 791 308 HOH HOH A . D 4 HOH 292 792 309 HOH HOH A . D 4 HOH 293 793 310 HOH HOH A . D 4 HOH 294 794 311 HOH HOH A . D 4 HOH 295 795 312 HOH HOH A . D 4 HOH 296 796 313 HOH HOH A . D 4 HOH 297 797 314 HOH HOH A . D 4 HOH 298 798 315 HOH HOH A . D 4 HOH 299 799 316 HOH HOH A . D 4 HOH 300 800 317 HOH HOH A . D 4 HOH 301 801 318 HOH HOH A . D 4 HOH 302 802 319 HOH HOH A . D 4 HOH 303 803 320 HOH HOH A . D 4 HOH 304 804 321 HOH HOH A . D 4 HOH 305 805 322 HOH HOH A . D 4 HOH 306 806 323 HOH HOH A . D 4 HOH 307 807 324 HOH HOH A . D 4 HOH 308 808 325 HOH HOH A . D 4 HOH 309 809 326 HOH HOH A . D 4 HOH 310 810 327 HOH HOH A . D 4 HOH 311 811 328 HOH HOH A . D 4 HOH 312 812 329 HOH HOH A . D 4 HOH 313 813 330 HOH HOH A . D 4 HOH 314 814 331 HOH HOH A . D 4 HOH 315 815 332 HOH HOH A . D 4 HOH 316 816 333 HOH HOH A . D 4 HOH 317 817 334 HOH HOH A . D 4 HOH 318 818 335 HOH HOH A . D 4 HOH 319 819 336 HOH HOH A . D 4 HOH 320 820 337 HOH HOH A . D 4 HOH 321 821 338 HOH HOH A . D 4 HOH 322 822 339 HOH HOH A . D 4 HOH 323 823 340 HOH HOH A . D 4 HOH 324 824 341 HOH HOH A . D 4 HOH 325 825 342 HOH HOH A . D 4 HOH 326 826 343 HOH HOH A . D 4 HOH 327 827 344 HOH HOH A . D 4 HOH 328 828 345 HOH HOH A . D 4 HOH 329 829 346 HOH HOH A . D 4 HOH 330 830 347 HOH HOH A . D 4 HOH 331 831 348 HOH HOH A . D 4 HOH 332 832 349 HOH HOH A . D 4 HOH 333 833 350 HOH HOH A . D 4 HOH 334 834 351 HOH HOH A . D 4 HOH 335 835 352 HOH HOH A . D 4 HOH 336 836 353 HOH HOH A . D 4 HOH 337 837 354 HOH HOH A . D 4 HOH 338 838 355 HOH HOH A . D 4 HOH 339 839 356 HOH HOH A . D 4 HOH 340 840 357 HOH HOH A . D 4 HOH 341 841 358 HOH HOH A . D 4 HOH 342 842 359 HOH HOH A . D 4 HOH 343 843 360 HOH HOH A . D 4 HOH 344 844 361 HOH HOH A . D 4 HOH 345 845 362 HOH HOH A . D 4 HOH 346 846 363 HOH HOH A . D 4 HOH 347 847 364 HOH HOH A . D 4 HOH 348 848 365 HOH HOH A . D 4 HOH 349 849 366 HOH HOH A . D 4 HOH 350 850 367 HOH HOH A . D 4 HOH 351 851 368 HOH HOH A . D 4 HOH 352 852 369 HOH HOH A . D 4 HOH 353 853 370 HOH HOH A . D 4 HOH 354 854 371 HOH HOH A . D 4 HOH 355 855 372 HOH HOH A . D 4 HOH 356 856 373 HOH HOH A . D 4 HOH 357 857 374 HOH HOH A . D 4 HOH 358 858 375 HOH HOH A . D 4 HOH 359 859 376 HOH HOH A . D 4 HOH 360 860 377 HOH HOH A . D 4 HOH 361 861 378 HOH HOH A . D 4 HOH 362 862 380 HOH HOH A . D 4 HOH 363 863 381 HOH HOH A . D 4 HOH 364 864 382 HOH HOH A . D 4 HOH 365 865 383 HOH HOH A . D 4 HOH 366 866 384 HOH HOH A . D 4 HOH 367 867 385 HOH HOH A . D 4 HOH 368 868 386 HOH HOH A . D 4 HOH 369 869 387 HOH HOH A . D 4 HOH 370 870 389 HOH HOH A . D 4 HOH 371 871 391 HOH HOH A . D 4 HOH 372 872 392 HOH HOH A . D 4 HOH 373 873 393 HOH HOH A . D 4 HOH 374 874 394 HOH HOH A . D 4 HOH 375 875 395 HOH HOH A . D 4 HOH 376 876 396 HOH HOH A . D 4 HOH 377 877 397 HOH HOH A . D 4 HOH 378 878 398 HOH HOH A . D 4 HOH 379 879 399 HOH HOH A . D 4 HOH 380 880 400 HOH HOH A . D 4 HOH 381 881 401 HOH HOH A . D 4 HOH 382 882 402 HOH HOH A . D 4 HOH 383 883 403 HOH HOH A . D 4 HOH 384 884 404 HOH HOH A . D 4 HOH 385 885 405 HOH HOH A . D 4 HOH 386 886 406 HOH HOH A . D 4 HOH 387 887 407 HOH HOH A . D 4 HOH 388 888 408 HOH HOH A . D 4 HOH 389 889 409 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 21 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 52 A MSE 32 ? MET SELENOMETHIONINE 3 A MSE 62 A MSE 42 ? MET SELENOMETHIONINE 4 A MSE 127 A MSE 107 ? MET SELENOMETHIONINE 5 A MSE 257 A MSE 237 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 871 ? D HOH . 2 1 A HOH 872 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 35 ? A THR 15 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O3B ? B GDP . ? A GDP 401 ? 1_555 62.4 ? 2 OG1 ? A THR 35 ? A THR 15 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 875 ? 1_555 106.8 ? 3 O3B ? B GDP . ? A GDP 401 ? 1_555 MG ? C MG . ? A MG 402 ? 1_555 O ? D HOH . ? A HOH 875 ? 1_555 91.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-10 2 'Structure model' 1 1 2020-05-06 3 'Structure model' 1 2 2023-11-08 4 'Structure model' 1 3 2023-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' 7 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' struct_conn 4 2 'Structure model' struct_ref_seq_dif 5 3 'Structure model' chem_comp_atom 6 3 'Structure model' chem_comp_bond 7 3 'Structure model' database_2 8 3 'Structure model' pdbx_initial_refinement_model 9 3 'Structure model' pdbx_struct_conn_angle 10 3 'Structure model' struct_conn 11 3 'Structure model' struct_site 12 4 'Structure model' chem_comp_atom 13 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 2 'Structure model' '_struct_ref_seq_dif.details' 13 3 'Structure model' '_database_2.pdbx_DOI' 14 3 'Structure model' '_database_2.pdbx_database_accession' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.value' 28 3 'Structure model' '_struct_conn.pdbx_dist_value' 29 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 43 4 'Structure model' '_chem_comp_atom.atom_id' 44 4 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 736 ? ? O A HOH 862 ? ? 1.97 2 1 O2B A GDP 401 ? ? O A HOH 880 ? ? 2.00 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A -1 ? ? -92.06 54.87 2 1 SER A 28 ? ? -140.34 -115.12 3 1 THR A 205 ? ? -145.39 -151.86 4 1 ASN A 241 ? ? 80.54 17.85 5 1 PHE A 272 ? ? -107.07 52.97 6 1 ALA A 279 ? ? 69.51 -3.06 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -19 ? A MSE 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GDP PB P N N 88 GDP O1B O N N 89 GDP O2B O N N 90 GDP O3B O N N 91 GDP O3A O N N 92 GDP PA P N N 93 GDP O1A O N N 94 GDP O2A O N N 95 GDP "O5'" O N N 96 GDP "C5'" C N N 97 GDP "C4'" C N R 98 GDP "O4'" O N N 99 GDP "C3'" C N S 100 GDP "O3'" O N N 101 GDP "C2'" C N R 102 GDP "O2'" O N N 103 GDP "C1'" C N R 104 GDP N9 N Y N 105 GDP C8 C Y N 106 GDP N7 N Y N 107 GDP C5 C Y N 108 GDP C6 C N N 109 GDP O6 O N N 110 GDP N1 N N N 111 GDP C2 C N N 112 GDP N2 N N N 113 GDP N3 N N N 114 GDP C4 C Y N 115 GDP HOB2 H N N 116 GDP HOB3 H N N 117 GDP HOA2 H N N 118 GDP "H5'" H N N 119 GDP "H5''" H N N 120 GDP "H4'" H N N 121 GDP "H3'" H N N 122 GDP "HO3'" H N N 123 GDP "H2'" H N N 124 GDP "HO2'" H N N 125 GDP "H1'" H N N 126 GDP H8 H N N 127 GDP HN1 H N N 128 GDP HN21 H N N 129 GDP HN22 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MG MG MG N N 273 MSE N N N N 274 MSE CA C N S 275 MSE C C N N 276 MSE O O N N 277 MSE OXT O N N 278 MSE CB C N N 279 MSE CG C N N 280 MSE SE SE N N 281 MSE CE C N N 282 MSE H H N N 283 MSE H2 H N N 284 MSE HA H N N 285 MSE HXT H N N 286 MSE HB2 H N N 287 MSE HB3 H N N 288 MSE HG2 H N N 289 MSE HG3 H N N 290 MSE HE1 H N N 291 MSE HE2 H N N 292 MSE HE3 H N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GDP PB O1B doub N N 83 GDP PB O2B sing N N 84 GDP PB O3B sing N N 85 GDP PB O3A sing N N 86 GDP O2B HOB2 sing N N 87 GDP O3B HOB3 sing N N 88 GDP O3A PA sing N N 89 GDP PA O1A doub N N 90 GDP PA O2A sing N N 91 GDP PA "O5'" sing N N 92 GDP O2A HOA2 sing N N 93 GDP "O5'" "C5'" sing N N 94 GDP "C5'" "C4'" sing N N 95 GDP "C5'" "H5'" sing N N 96 GDP "C5'" "H5''" sing N N 97 GDP "C4'" "O4'" sing N N 98 GDP "C4'" "C3'" sing N N 99 GDP "C4'" "H4'" sing N N 100 GDP "O4'" "C1'" sing N N 101 GDP "C3'" "O3'" sing N N 102 GDP "C3'" "C2'" sing N N 103 GDP "C3'" "H3'" sing N N 104 GDP "O3'" "HO3'" sing N N 105 GDP "C2'" "O2'" sing N N 106 GDP "C2'" "C1'" sing N N 107 GDP "C2'" "H2'" sing N N 108 GDP "O2'" "HO2'" sing N N 109 GDP "C1'" N9 sing N N 110 GDP "C1'" "H1'" sing N N 111 GDP N9 C8 sing Y N 112 GDP N9 C4 sing Y N 113 GDP C8 N7 doub Y N 114 GDP C8 H8 sing N N 115 GDP N7 C5 sing Y N 116 GDP C5 C6 sing N N 117 GDP C5 C4 doub Y N 118 GDP C6 O6 doub N N 119 GDP C6 N1 sing N N 120 GDP N1 C2 sing N N 121 GDP N1 HN1 sing N N 122 GDP C2 N2 sing N N 123 GDP C2 N3 doub N N 124 GDP N2 HN21 sing N N 125 GDP N2 HN22 sing N N 126 GDP N3 C4 sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MSE N CA sing N N 263 MSE N H sing N N 264 MSE N H2 sing N N 265 MSE CA C sing N N 266 MSE CA CB sing N N 267 MSE CA HA sing N N 268 MSE C O doub N N 269 MSE C OXT sing N N 270 MSE OXT HXT sing N N 271 MSE CB CG sing N N 272 MSE CB HB2 sing N N 273 MSE CB HB3 sing N N 274 MSE CG SE sing N N 275 MSE CG HG2 sing N N 276 MSE CG HG3 sing N N 277 MSE SE CE sing N N 278 MSE CE HE1 sing N N 279 MSE CE HE2 sing N N 280 MSE CE HE3 sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3WNB _pdbx_initial_refinement_model.details ? #