data_3WRU # _entry.id 3WRU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3WRU pdb_00003wru 10.2210/pdb3wru/pdb NDB NA2943 ? ? RCSB RCSB096712 ? ? WWPDB D_1000096712 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-05 2 'Structure model' 1 1 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.value' 18 2 'Structure model' '_struct_conn.pdbx_dist_value' 19 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3WRU _pdbx_database_status.recvd_initial_deposition_date 2014-02-27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Maianti, J.P.' 1 'Kanazawa, H.' 2 'Dozzo, P.' 3 'Feeney, L.A.' 4 'Armstrong, E.S.' 5 'Kondo, J.' 6 'Hanessian, S.' 7 # _citation.id primary _citation.title 'Toxicity Modulation, Resistance Enzyme Evasion, and A-Site X-ray Structure of Broad-Spectrum Antibacterial Neomycin Analogs' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 9 _citation.page_first 2067 _citation.page_last 2073 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25019242 _citation.pdbx_database_id_DOI 10.1021/cb5003416 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Maianti, J.P.' 1 ? primary 'Kanazawa, H.' 2 ? primary 'Dozzo, P.' 3 ? primary 'Matias, R.D.' 4 ? primary 'Feeney, L.A.' 5 ? primary 'Armstrong, E.S.' 6 ? primary 'Hildebrandt, D.J.' 7 ? primary 'Kane, T.R.' 8 ? primary 'Gliedt, M.J.' 9 ? primary 'Goldblum, A.A.' 10 ? primary 'Linsell, M.S.' 11 ? primary 'Aggen, J.B.' 12 ? primary 'Kondo, J.' 13 ? primary 'Hanessian, S.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') ; 7370.424 2 ? ? ? ? 2 non-polymer syn ;(2R,3R)-4-amino-N-[(1R,2S,3R,4R,5S)-5-amino-4-[(2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranosyl)oxy]-3-{[3-O-(2,6-diamino-2,3,4,6-tetradeoxy-beta-L-threo-hexopyranosyl)-beta-D-ribofuranosyl]oxy}-2-hydroxycyclohexyl]-3-fluoro-2-hydroxybutanamide ; 669.740 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGCGUCACGCCGGCGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCACGCCGGCGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2R,3R)-4-amino-N-[(1R,2S,3R,4R,5S)-5-amino-4-[(2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranosyl)oxy]-3-{[3-O-(2,6-diamino-2,3,4,6-tetradeoxy-beta-L-threo-hexopyranosyl)-beta-D-ribofuranosyl]oxy}-2-hydroxycyclohexyl]-3-fluoro-2-hydroxybutanamide ; SJP 3 'POTASSIUM ION' K 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 A n 1 9 C n 1 10 G n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 C n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 SJP non-polymer . ;(2R,3R)-4-amino-N-[(1R,2S,3R,4R,5S)-5-amino-4-[(2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranosyl)oxy]-3-{[3-O-(2,6-diamino-2,3,4,6-tetradeoxy-beta-L-threo-hexopyranosyl)-beta-D-ribofuranosyl]oxy}-2-hydroxycyclohexyl]-3-fluoro-2-hydroxybutanamide ; ? 'C27 H52 F N7 O11' 669.740 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? A . n A 1 2 U 2 2 ? ? ? A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n B 1 1 U 1 24 ? ? ? B . n B 1 2 U 2 25 ? ? ? B . n B 1 3 G 3 26 26 G G B . n B 1 4 C 4 27 27 C C B . n B 1 5 G 5 28 28 G G B . n B 1 6 U 6 29 29 U U B . n B 1 7 C 7 30 30 C C B . n B 1 8 A 8 31 31 A A B . n B 1 9 C 9 32 32 C C B . n B 1 10 G 10 33 33 G G B . n B 1 11 C 11 34 34 C C B . n B 1 12 C 12 35 35 C C B . n B 1 13 G 13 36 36 G G B . n B 1 14 G 14 37 37 G G B . n B 1 15 C 15 38 38 C C B . n B 1 16 G 16 39 39 G G B . n B 1 17 A 17 40 40 A A B . n B 1 18 A 18 41 41 A A B . n B 1 19 G 19 42 42 G G B . n B 1 20 U 20 43 43 U U B . n B 1 21 C 21 44 44 C C B . n B 1 22 G 22 45 45 G G B . n B 1 23 C 23 46 46 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SJP 1 101 51 SJP 177 A . D 2 SJP 1 101 50 SJP 177 B . E 3 K 1 102 61 K K B . F 4 HOH 1 201 101 HOH HOH A . F 4 HOH 2 202 102 HOH HOH A . F 4 HOH 3 203 107 HOH HOH A . F 4 HOH 4 204 111 HOH HOH A . F 4 HOH 5 205 115 HOH HOH A . F 4 HOH 6 206 116 HOH HOH A . F 4 HOH 7 207 120 HOH HOH A . F 4 HOH 8 208 123 HOH HOH A . F 4 HOH 9 209 124 HOH HOH A . F 4 HOH 10 210 125 HOH HOH A . F 4 HOH 11 211 131 HOH HOH A . F 4 HOH 12 212 132 HOH HOH A . F 4 HOH 13 213 133 HOH HOH A . F 4 HOH 14 214 134 HOH HOH A . F 4 HOH 15 215 135 HOH HOH A . F 4 HOH 16 216 138 HOH HOH A . F 4 HOH 17 217 139 HOH HOH A . F 4 HOH 18 218 141 HOH HOH A . F 4 HOH 19 219 142 HOH HOH A . F 4 HOH 20 220 145 HOH HOH A . F 4 HOH 21 221 146 HOH HOH A . F 4 HOH 22 222 147 HOH HOH A . F 4 HOH 23 223 148 HOH HOH A . F 4 HOH 24 224 150 HOH HOH A . F 4 HOH 25 225 154 HOH HOH A . G 4 HOH 1 201 103 HOH HOH B . G 4 HOH 2 202 104 HOH HOH B . G 4 HOH 3 203 105 HOH HOH B . G 4 HOH 4 204 106 HOH HOH B . G 4 HOH 5 205 108 HOH HOH B . G 4 HOH 6 206 109 HOH HOH B . G 4 HOH 7 207 110 HOH HOH B . G 4 HOH 8 208 112 HOH HOH B . G 4 HOH 9 209 113 HOH HOH B . G 4 HOH 10 210 114 HOH HOH B . G 4 HOH 11 211 117 HOH HOH B . G 4 HOH 12 212 118 HOH HOH B . G 4 HOH 13 213 119 HOH HOH B . G 4 HOH 14 214 121 HOH HOH B . G 4 HOH 15 215 122 HOH HOH B . G 4 HOH 16 216 126 HOH HOH B . G 4 HOH 17 217 127 HOH HOH B . G 4 HOH 18 218 128 HOH HOH B . G 4 HOH 19 219 129 HOH HOH B . G 4 HOH 20 220 130 HOH HOH B . G 4 HOH 21 221 136 HOH HOH B . G 4 HOH 22 222 137 HOH HOH B . G 4 HOH 23 223 140 HOH HOH B . G 4 HOH 24 224 143 HOH HOH B . G 4 HOH 25 225 144 HOH HOH B . G 4 HOH 26 226 149 HOH HOH B . G 4 HOH 27 227 151 HOH HOH B . G 4 HOH 28 228 152 HOH HOH B . G 4 HOH 29 229 153 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX 'model building' . ? 1 CNS refinement . ? 2 CrystalClear 'data reduction' . ? 3 CrystalClear 'data scaling' . ? 4 PHENIX phasing . ? 5 # _cell.entry_id 3WRU _cell.length_a 46.554 _cell.length_b 32.602 _cell.length_c 51.413 _cell.angle_alpha 90.00 _cell.angle_beta 108.50 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WRU _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3WRU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 51.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'Na Cacodylate, Spermine, KCl, MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-10-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3WRU _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.7 _reflns.d_resolution_high 2.3 _reflns.number_obs 6668 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.054 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3WRU _refine.ls_number_reflns_obs 6668 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.7 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 99.5000 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.249 _refine.ls_R_factor_R_free 0.262 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.8000 _refine.ls_number_reflns_R_free 725 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.5479 _refine.solvent_model_param_bsol 44.9182 _refine.solvent_model_param_ksol ? _refine.aniso_B[1][1] -5.1360 _refine.aniso_B[2][2] 3.2680 _refine.aniso_B[3][3] 1.8690 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 5.7770 _refine.aniso_B[2][3] 0.0000 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_max 80.510 _refine.B_iso_min 23.920 _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.solvent_model_details ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 900 _refine_hist.pdbx_number_atoms_ligand 93 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 1047 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 39.7 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_bond_d ? 0.005 ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? 0.921 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 0.000 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 1.489 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 0.000 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 2.199 2.500 ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 2.3000 2.3800 10 100.0000 568 . 0.3908 0.3731 . 69 . 637 . 'X-RAY DIFFRACTION' . 2.3800 2.4800 10 100.0000 619 . 0.4354 0.5219 . 65 . 684 . 'X-RAY DIFFRACTION' . 2.4800 2.5900 10 100.0000 608 . 0.4188 0.4526 . 49 . 657 . 'X-RAY DIFFRACTION' . 2.5900 2.7300 10 100.0000 602 . 0.3535 0.3128 . 66 . 668 . 'X-RAY DIFFRACTION' . 2.7300 2.9000 10 100.0000 585 . 0.3258 0.3661 . 77 . 662 . 'X-RAY DIFFRACTION' . 2.9000 3.1200 10 100.0000 569 . 0.2901 0.3107 . 85 . 654 . 'X-RAY DIFFRACTION' . 3.1200 3.4400 10 99.6000 583 . 0.2566 0.3152 . 85 . 668 . 'X-RAY DIFFRACTION' . 3.4400 3.9300 10 100.0000 607 . 0.2226 0.2380 . 71 . 678 . 'X-RAY DIFFRACTION' . 3.9300 4.9600 10 99.4000 594 . 0.1738 0.1663 . 76 . 670 . 'X-RAY DIFFRACTION' . 4.9600 100.0000 10 96.4000 608 . 0.1919 0.2038 . 82 . 690 . 'X-RAY DIFFRACTION' . # _database_PDB_matrix.entry_id 3WRU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3WRU _struct.title 'Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA group' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WRU _struct_keywords.pdbx_keywords RNA/antibiotic _struct_keywords.text 'ribosomal RNA, aminoglycoside, RNA-antibiotic complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3WRU _struct_ref.pdbx_db_accession 3WRU _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3WRU A 1 ? 23 ? 3WRU 1 ? 23 ? 1 23 2 1 3WRU B 1 ? 23 ? 3WRU 24 ? 46 ? 24 46 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2640 ? 1 MORE -14 ? 1 'SSA (A^2)' 8150 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? F HOH . O ? ? ? 1_555 E K . K ? ? A HOH 203 B K 102 1_555 ? ? ? ? ? ? ? 3.195 ? ? metalc2 metalc ? ? F HOH . O ? ? ? 1_555 E K . K ? ? A HOH 213 B K 102 1_555 ? ? ? ? ? ? ? 3.229 ? ? metalc3 metalc ? ? F HOH . O ? ? ? 1_555 E K . K ? ? A HOH 220 B K 102 1_555 ? ? ? ? ? ? ? 3.142 ? ? metalc4 metalc ? ? B G 14 O6 ? ? ? 1_555 E K . K ? ? B G 37 B K 102 1_555 ? ? ? ? ? ? ? 3.232 ? ? metalc5 metalc ? ? E K . K ? ? ? 1_555 G HOH . O ? ? B K 102 B HOH 229 1_555 ? ? ? ? ? ? ? 3.127 ? ? hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 3 B C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 4 B G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 5 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 20 N3 ? ? A U 6 B U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 7 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 9 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 11 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 12 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 13 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 14 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 16 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 19 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 20 B U 29 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog42 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 21 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 22 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 23 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 203 ? 1_555 K ? E K . ? B K 102 ? 1_555 O ? F HOH . ? A HOH 213 ? 1_555 53.7 ? 2 O ? F HOH . ? A HOH 203 ? 1_555 K ? E K . ? B K 102 ? 1_555 O ? F HOH . ? A HOH 220 ? 1_555 108.7 ? 3 O ? F HOH . ? A HOH 213 ? 1_555 K ? E K . ? B K 102 ? 1_555 O ? F HOH . ? A HOH 220 ? 1_555 70.3 ? 4 O ? F HOH . ? A HOH 203 ? 1_555 K ? E K . ? B K 102 ? 1_555 O6 ? B G 14 ? B G 37 ? 1_555 64.6 ? 5 O ? F HOH . ? A HOH 213 ? 1_555 K ? E K . ? B K 102 ? 1_555 O6 ? B G 14 ? B G 37 ? 1_555 79.4 ? 6 O ? F HOH . ? A HOH 220 ? 1_555 K ? E K . ? B K 102 ? 1_555 O6 ? B G 14 ? B G 37 ? 1_555 144.2 ? 7 O ? F HOH . ? A HOH 203 ? 1_555 K ? E K . ? B K 102 ? 1_555 O ? G HOH . ? B HOH 229 ? 1_555 99.9 ? 8 O ? F HOH . ? A HOH 213 ? 1_555 K ? E K . ? B K 102 ? 1_555 O ? G HOH . ? B HOH 229 ? 1_555 57.2 ? 9 O ? F HOH . ? A HOH 220 ? 1_555 K ? E K . ? B K 102 ? 1_555 O ? G HOH . ? B HOH 229 ? 1_555 79.7 ? 10 O6 ? B G 14 ? B G 37 ? 1_555 K ? E K . ? B K 102 ? 1_555 O ? G HOH . ? B HOH 229 ? 1_555 67.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SJP 101 ? 16 'BINDING SITE FOR RESIDUE SJP A 101' AC2 Software B SJP 101 ? 19 'BINDING SITE FOR RESIDUE SJP B 101' AC3 Software B K 102 ? 1 'BINDING SITE FOR RESIDUE K B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 C A 15 ? C A 15 . ? 1_555 ? 2 AC1 16 G A 16 ? G A 16 . ? 1_555 ? 3 AC1 16 A A 18 ? A A 18 . ? 1_555 ? 4 AC1 16 G A 19 ? G A 19 . ? 1_555 ? 5 AC1 16 U A 20 ? U A 20 . ? 1_555 ? 6 AC1 16 C A 21 ? C A 21 . ? 1_555 ? 7 AC1 16 G A 22 ? G A 22 . ? 1_555 ? 8 AC1 16 C A 23 ? C A 23 . ? 1_555 ? 9 AC1 16 HOH F . ? HOH A 207 . ? 1_555 ? 10 AC1 16 HOH F . ? HOH A 215 . ? 1_555 ? 11 AC1 16 C B 4 ? C B 27 . ? 1_555 ? 12 AC1 16 G B 5 ? G B 28 . ? 1_555 ? 13 AC1 16 C B 7 ? C B 30 . ? 1_555 ? 14 AC1 16 A B 8 ? A B 31 . ? 1_555 ? 15 AC1 16 HOH G . ? HOH B 203 . ? 1_555 ? 16 AC1 16 HOH G . ? HOH B 227 . ? 1_555 ? 17 AC2 19 G A 3 ? G A 3 . ? 1_555 ? 18 AC2 19 C A 4 ? C A 4 . ? 1_555 ? 19 AC2 19 G A 5 ? G A 5 . ? 1_555 ? 20 AC2 19 C A 7 ? C A 7 . ? 1_555 ? 21 AC2 19 A A 8 ? A A 8 . ? 1_555 ? 22 AC2 19 HOH F . ? HOH A 202 . ? 1_555 ? 23 AC2 19 HOH F . ? HOH A 206 . ? 1_555 ? 24 AC2 19 HOH F . ? HOH A 223 . ? 1_555 ? 25 AC2 19 C B 15 ? C B 38 . ? 1_555 ? 26 AC2 19 G B 16 ? G B 39 . ? 1_555 ? 27 AC2 19 A B 18 ? A B 41 . ? 1_555 ? 28 AC2 19 G B 19 ? G B 42 . ? 1_555 ? 29 AC2 19 U B 20 ? U B 43 . ? 1_555 ? 30 AC2 19 C B 21 ? C B 44 . ? 1_555 ? 31 AC2 19 G B 22 ? G B 45 . ? 1_555 ? 32 AC2 19 C B 23 ? C B 46 . ? 1_555 ? 33 AC2 19 HOH G . ? HOH B 204 . ? 1_555 ? 34 AC2 19 HOH G . ? HOH B 206 . ? 1_555 ? 35 AC2 19 HOH G . ? HOH B 209 . ? 1_555 ? 36 AC3 1 G B 14 ? G B 37 . ? 1_555 ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 1 ? A U 1 2 1 Y 1 A U 2 ? A U 2 3 1 Y 1 B U 24 ? B U 1 4 1 Y 1 B U 25 ? B U 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 SJP C1 C N R 115 SJP C10 C N R 116 SJP C11 C N R 117 SJP C12 C N S 118 SJP C13 C N S 119 SJP C14 C N R 120 SJP C15 C N S 121 SJP C16 C N R 122 SJP C17 C N N 123 SJP C18 C N R 124 SJP C19 C N R 125 SJP C2 C N R 126 SJP C20 C N N 127 SJP C21 C N N 128 SJP C22 C N R 129 SJP C23 C N N 130 SJP C24 C N R 131 SJP C26 C N N 132 SJP C27 C N N 133 SJP C28 C N R 134 SJP C3 C N N 135 SJP C4 C N N 136 SJP C5 C N S 137 SJP C6 C N N 138 SJP C7 C N R 139 SJP C8 C N N 140 SJP C9 C N S 141 SJP F99 F N N 142 SJP N19 N N N 143 SJP N2 N N N 144 SJP N23 N N N 145 SJP N3 N N N 146 SJP N6 N N N 147 SJP N7 N N N 148 SJP N9 N N N 149 SJP O1 O N N 150 SJP O11 O N N 151 SJP O12 O N N 152 SJP O14 O N N 153 SJP O16 O N N 154 SJP O17 O N N 155 SJP O18 O N N 156 SJP O19 O N N 157 SJP O2 O N N 158 SJP O22 O N N 159 SJP O5 O N N 160 SJP H1 H N N 161 SJP H2 H N N 162 SJP H3 H N N 163 SJP H4 H N N 164 SJP H5 H N N 165 SJP H6 H N N 166 SJP H7 H N N 167 SJP H8 H N N 168 SJP H9 H N N 169 SJP H10 H N N 170 SJP H11 H N N 171 SJP H12 H N N 172 SJP H13 H N N 173 SJP H14 H N N 174 SJP H15 H N N 175 SJP H16 H N N 176 SJP H17 H N N 177 SJP H18 H N N 178 SJP H19 H N N 179 SJP H20 H N N 180 SJP H21 H N N 181 SJP H22 H N N 182 SJP H23 H N N 183 SJP H24 H N N 184 SJP H25 H N N 185 SJP H26 H N N 186 SJP H27 H N N 187 SJP H28 H N N 188 SJP H29 H N N 189 SJP H30 H N N 190 SJP H31 H N N 191 SJP H32 H N N 192 SJP H33 H N N 193 SJP H34 H N N 194 SJP H35 H N N 195 SJP H36 H N N 196 SJP H37 H N N 197 SJP H39 H N N 198 SJP H40 H N N 199 SJP H42 H N N 200 SJP H43 H N N 201 SJP H45 H N N 202 SJP H46 H N N 203 SJP H48 H N N 204 SJP H49 H N N 205 SJP H51 H N N 206 SJP H52 H N N 207 SJP H53 H N N 208 SJP H55 H N N 209 SJP H56 H N N 210 SJP H57 H N N 211 SJP H58 H N N 212 U OP3 O N N 213 U P P N N 214 U OP1 O N N 215 U OP2 O N N 216 U "O5'" O N N 217 U "C5'" C N N 218 U "C4'" C N R 219 U "O4'" O N N 220 U "C3'" C N S 221 U "O3'" O N N 222 U "C2'" C N R 223 U "O2'" O N N 224 U "C1'" C N R 225 U N1 N N N 226 U C2 C N N 227 U O2 O N N 228 U N3 N N N 229 U C4 C N N 230 U O4 O N N 231 U C5 C N N 232 U C6 C N N 233 U HOP3 H N N 234 U HOP2 H N N 235 U "H5'" H N N 236 U "H5''" H N N 237 U "H4'" H N N 238 U "H3'" H N N 239 U "HO3'" H N N 240 U "H2'" H N N 241 U "HO2'" H N N 242 U "H1'" H N N 243 U H3 H N N 244 U H5 H N N 245 U H6 H N N 246 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SJP C20 C19 sing N N 118 SJP C20 C21 sing N N 119 SJP C19 N23 sing N N 120 SJP C19 C18 sing N N 121 SJP C21 C22 sing N N 122 SJP C18 O18 sing N N 123 SJP C18 O22 sing N N 124 SJP C22 O22 sing N N 125 SJP C22 C23 sing N N 126 SJP O18 C15 sing N N 127 SJP O14 C14 sing N N 128 SJP C23 N19 sing N N 129 SJP C15 C14 sing N N 130 SJP C15 C16 sing N N 131 SJP C14 C13 sing N N 132 SJP F99 C24 sing N N 133 SJP N3 C27 sing N N 134 SJP C16 C17 sing N N 135 SJP C16 O16 sing N N 136 SJP C13 O16 sing N N 137 SJP C13 O11 sing N N 138 SJP O12 C12 sing N N 139 SJP C27 C24 sing N N 140 SJP C17 O17 sing N N 141 SJP C24 C28 sing N N 142 SJP O19 C28 sing N N 143 SJP O11 C11 sing N N 144 SJP C12 C11 sing N N 145 SJP C12 C7 sing N N 146 SJP C28 C26 sing N N 147 SJP N7 C26 sing N N 148 SJP N7 C7 sing N N 149 SJP C11 C10 sing N N 150 SJP C26 O2 doub N N 151 SJP C7 C8 sing N N 152 SJP C10 O1 sing N N 153 SJP C10 C9 sing N N 154 SJP C1 O1 sing N N 155 SJP C1 O5 sing N N 156 SJP C1 C2 sing N N 157 SJP N2 C2 sing N N 158 SJP C8 C9 sing N N 159 SJP O5 C5 sing N N 160 SJP C2 C3 sing N N 161 SJP C9 N9 sing N N 162 SJP N6 C6 sing N N 163 SJP C5 C6 sing N N 164 SJP C5 C4 sing N N 165 SJP C3 C4 sing N N 166 SJP C1 H1 sing N N 167 SJP C10 H2 sing N N 168 SJP C11 H3 sing N N 169 SJP C12 H4 sing N N 170 SJP C13 H5 sing N N 171 SJP C14 H6 sing N N 172 SJP C15 H7 sing N N 173 SJP C16 H8 sing N N 174 SJP C17 H9 sing N N 175 SJP C17 H10 sing N N 176 SJP C18 H11 sing N N 177 SJP C19 H12 sing N N 178 SJP C2 H13 sing N N 179 SJP C20 H14 sing N N 180 SJP C20 H15 sing N N 181 SJP C21 H16 sing N N 182 SJP C21 H17 sing N N 183 SJP C22 H18 sing N N 184 SJP C23 H19 sing N N 185 SJP C23 H20 sing N N 186 SJP C24 H21 sing N N 187 SJP C27 H22 sing N N 188 SJP C27 H23 sing N N 189 SJP C28 H24 sing N N 190 SJP C3 H25 sing N N 191 SJP C3 H26 sing N N 192 SJP C4 H27 sing N N 193 SJP C4 H28 sing N N 194 SJP C5 H29 sing N N 195 SJP C6 H30 sing N N 196 SJP C6 H31 sing N N 197 SJP C7 H32 sing N N 198 SJP C8 H33 sing N N 199 SJP C8 H34 sing N N 200 SJP C9 H35 sing N N 201 SJP N19 H36 sing N N 202 SJP N19 H37 sing N N 203 SJP N2 H39 sing N N 204 SJP N2 H40 sing N N 205 SJP N23 H42 sing N N 206 SJP N23 H43 sing N N 207 SJP N3 H45 sing N N 208 SJP N3 H46 sing N N 209 SJP N6 H48 sing N N 210 SJP N6 H49 sing N N 211 SJP N7 H51 sing N N 212 SJP N9 H52 sing N N 213 SJP N9 H53 sing N N 214 SJP O12 H55 sing N N 215 SJP O14 H56 sing N N 216 SJP O17 H57 sing N N 217 SJP O19 H58 sing N N 218 U OP3 P sing N N 219 U OP3 HOP3 sing N N 220 U P OP1 doub N N 221 U P OP2 sing N N 222 U P "O5'" sing N N 223 U OP2 HOP2 sing N N 224 U "O5'" "C5'" sing N N 225 U "C5'" "C4'" sing N N 226 U "C5'" "H5'" sing N N 227 U "C5'" "H5''" sing N N 228 U "C4'" "O4'" sing N N 229 U "C4'" "C3'" sing N N 230 U "C4'" "H4'" sing N N 231 U "O4'" "C1'" sing N N 232 U "C3'" "O3'" sing N N 233 U "C3'" "C2'" sing N N 234 U "C3'" "H3'" sing N N 235 U "O3'" "HO3'" sing N N 236 U "C2'" "O2'" sing N N 237 U "C2'" "C1'" sing N N 238 U "C2'" "H2'" sing N N 239 U "O2'" "HO2'" sing N N 240 U "C1'" N1 sing N N 241 U "C1'" "H1'" sing N N 242 U N1 C2 sing N N 243 U N1 C6 sing N N 244 U C2 O2 doub N N 245 U C2 N3 sing N N 246 U N3 C4 sing N N 247 U N3 H3 sing N N 248 U C4 O4 doub N N 249 U C4 C5 sing N N 250 U C5 C6 doub N N 251 U C5 H5 sing N N 252 U C6 H6 sing N N 253 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3WRU 'double helix' 3WRU 'a-form double helix' 3WRU 'mismatched base pair' 3WRU 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.527 -0.149 0.055 1.286 -6.169 0.311 1 A_G3:C46_B A 3 ? B 46 ? 19 1 1 A C 4 1_555 B G 22 1_555 0.123 -0.117 -0.094 6.101 -17.778 2.206 2 A_C4:G45_B A 4 ? B 45 ? 19 1 1 A G 5 1_555 B C 21 1_555 0.037 -0.124 -0.137 -4.412 -8.817 -0.864 3 A_G5:C44_B A 5 ? B 44 ? 19 1 1 A U 6 1_555 B U 20 1_555 -2.494 -1.179 -1.227 7.189 -11.851 -27.512 4 A_U6:U43_B A 6 ? B 43 ? ? ? 1 A C 7 1_555 B G 19 1_555 0.230 -0.233 -0.711 0.345 3.182 -3.459 5 A_C7:G42_B A 7 ? B 42 ? 19 1 1 A C 9 1_555 B G 16 1_555 0.492 -0.207 -0.312 11.119 -22.980 3.367 6 A_C9:G39_B A 9 ? B 39 ? 19 1 1 A G 10 1_555 B C 15 1_555 -0.199 -0.081 -0.176 -6.182 -17.050 2.624 7 A_G10:C38_B A 10 ? B 38 ? 19 1 1 A C 11 1_555 B G 14 1_555 0.607 -0.213 0.106 5.641 -18.659 0.598 8 A_C11:G37_B A 11 ? B 37 ? 19 1 1 A C 12 1_555 B G 13 1_555 0.344 -0.206 0.289 -2.457 -10.586 -1.069 9 A_C12:G36_B A 12 ? B 36 ? 19 1 1 A G 13 1_555 B C 12 1_555 -0.039 -0.166 0.161 -4.903 -16.618 0.465 10 A_G13:C35_B A 13 ? B 35 ? 19 1 1 A G 14 1_555 B C 11 1_555 -0.127 -0.142 0.174 2.006 -15.986 0.877 11 A_G14:C34_B A 14 ? B 34 ? 19 1 1 A C 15 1_555 B G 10 1_555 0.318 -0.153 0.013 7.212 -14.402 -0.676 12 A_C15:G33_B A 15 ? B 33 ? 19 1 1 A G 16 1_555 B C 9 1_555 -0.006 -0.048 -0.351 -17.241 -23.002 2.562 13 A_G16:C32_B A 16 ? B 32 ? 19 1 1 A G 19 1_555 B C 7 1_555 -0.500 -0.176 -0.411 2.565 2.823 -6.522 14 A_G19:C30_B A 19 ? B 30 ? 19 1 1 A U 20 1_555 B U 6 1_555 1.870 -1.197 -1.494 -0.210 -21.615 -20.656 15 A_U20:U29_B A 20 ? B 29 ? ? ? 1 A C 21 1_555 B G 5 1_555 0.096 -0.151 -0.197 5.599 -9.152 -1.839 16 A_C21:G28_B A 21 ? B 28 ? 19 1 1 A G 22 1_555 B C 4 1_555 0.225 -0.013 -0.014 -5.871 -8.050 0.655 17 A_G22:C27_B A 22 ? B 27 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.490 -0.171 0.097 -1.850 -1.821 -0.185 18 A_C23:G26_B A 23 ? B 26 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 0.142 -1.610 3.291 4.051 -1.600 35.214 -2.403 0.372 3.353 -2.632 -6.664 35.473 1 AA_G3C4:G45C46_BB A 3 ? B 46 ? A 4 ? B 45 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 -0.379 -1.566 3.455 -0.388 12.260 31.541 -4.624 0.592 2.682 21.561 0.683 33.786 2 AA_C4G5:C44G45_BB A 4 ? B 45 ? A 5 ? B 44 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 -0.667 -2.350 3.014 7.062 10.485 17.046 -9.397 3.838 1.055 30.501 -20.542 21.194 3 AA_G5U6:U43C44_BB A 5 ? B 44 ? A 6 ? B 43 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 2.031 -2.237 3.802 -2.581 0.498 44.524 -3.000 -2.946 3.661 0.656 3.402 44.597 4 AA_U6C7:G42U43_BB A 6 ? B 43 ? A 7 ? B 42 ? 1 A C 7 1_555 B G 19 1_555 A C 9 1_555 B G 16 1_555 1.513 -3.253 6.426 -9.969 19.982 77.844 -3.487 -1.655 5.413 15.606 7.786 80.492 5 AA_C7C9:G39G42_BB A 7 ? B 42 ? A 9 ? B 39 ? 1 A C 9 1_555 B G 16 1_555 A G 10 1_555 B C 15 1_555 -0.212 -1.796 3.538 -2.406 19.143 29.407 -5.665 0.015 2.037 33.546 4.216 35.054 6 AA_C9G10:C38G39_BB A 9 ? B 39 ? A 10 ? B 38 ? 1 A G 10 1_555 B C 15 1_555 A C 11 1_555 B G 14 1_555 0.727 -1.930 2.967 1.244 -0.579 32.180 -3.384 -1.107 3.025 -1.045 -2.243 32.209 7 AA_G10C11:G37C38_BB A 10 ? B 38 ? A 11 ? B 37 ? 1 A C 11 1_555 B G 14 1_555 A C 12 1_555 B G 13 1_555 -0.868 -2.106 3.398 -3.161 5.014 29.281 -5.128 1.028 3.077 9.792 6.173 29.862 8 AA_C11C12:G36G37_BB A 11 ? B 37 ? A 12 ? B 36 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 -0.096 -1.412 3.072 2.379 9.772 30.226 -4.136 0.555 2.492 18.119 -4.412 31.819 9 AA_C12G13:C35G36_BB A 12 ? B 36 ? A 13 ? B 35 ? 1 A G 13 1_555 B C 12 1_555 A G 14 1_555 B C 11 1_555 -0.135 -1.277 3.017 -0.627 6.281 33.262 -3.094 0.143 2.739 10.852 1.084 33.839 10 AA_G13G14:C34C35_BB A 13 ? B 35 ? A 14 ? B 34 ? 1 A G 14 1_555 B C 11 1_555 A C 15 1_555 B G 10 1_555 0.611 -1.377 3.117 2.686 1.626 32.534 -2.714 -0.644 3.086 2.894 -4.780 32.681 11 AA_G14C15:G33C34_BB A 14 ? B 34 ? A 15 ? B 33 ? 1 A C 15 1_555 B G 10 1_555 A G 16 1_555 B C 9 1_555 0.128 -1.857 3.668 4.856 17.287 32.558 -5.226 0.447 2.409 28.310 -7.953 37.063 12 AA_C15G16:C32G33_BB A 15 ? B 33 ? A 16 ? B 32 ? 1 A G 16 1_555 B C 9 1_555 A G 19 1_555 B C 7 1_555 -1.678 -3.546 6.198 8.103 20.707 75.333 -3.839 1.733 5.065 16.602 -6.496 78.077 13 AA_G16G19:C30C32_BB A 16 ? B 32 ? A 19 ? B 30 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 -1.577 -2.364 3.618 5.184 3.416 42.248 -3.609 2.714 3.220 4.709 -7.145 42.681 14 AA_G19U20:U29C30_BB A 19 ? B 30 ? A 20 ? B 29 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 0.512 -2.240 3.195 -8.063 7.363 23.384 -6.778 -3.071 2.114 17.026 18.647 25.776 15 AA_U20C21:G28U29_BB A 20 ? B 29 ? A 21 ? B 28 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 0.330 -1.911 3.523 -1.316 9.394 31.323 -5.008 -0.812 2.831 16.919 2.371 32.693 16 AA_C21G22:C27G28_BB A 21 ? B 28 ? A 22 ? B 27 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.287 -2.090 3.262 -0.164 -2.359 32.482 -3.307 -0.541 3.400 -4.211 0.292 32.566 17 AA_G22C23:G26C27_BB A 22 ? B 27 ? A 23 ? B 26 ? # _atom_sites.entry_id 3WRU _atom_sites.fract_transf_matrix[1][1] 0.021480 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007187 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030673 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020510 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F K N O P # loop_