data_3WZI # _entry.id 3WZI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.360 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3WZI pdb_00003wzi 10.2210/pdb3wzi/pdb NDB NA3206 ? ? RCSB RCSB096988 ? ? WWPDB D_1000096988 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3WZG . unspecified PDB 3WZH . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3WZI _pdbx_database_status.recvd_initial_deposition_date 2014-09-25 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yuan, Y.A.' 1 'Yan, X.' 2 # _citation.id primary _citation.title 'Crystal structures of CRISPR-associated Csx3 reveal a manganese-dependent deadenylation exoribonuclease.' _citation.journal_abbrev 'Rna Biol.' _citation.journal_volume 12 _citation.page_first 749 _citation.page_last 760 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1555-8584 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26106927 _citation.pdbx_database_id_DOI 10.1080/15476286.2015.1051300 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yan, X.' 1 ? primary 'Guo, W.' 2 ? primary 'Yuan, Y.A.' 3 ? # _cell.entry_id 3WZI _cell.length_a 71.168 _cell.length_b 80.294 _cell.length_c 181.229 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WZI _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein AF_1864' 12437.521 2 ? ? ? ? 2 polymer syn ssRNA 1264.826 1 ? ? ? ? 3 water nat water 18.015 10 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMASMKFAVIDRKNFTLIHFEIEKPIKPEILKEIEIPSVDTRKGVVISGRGPIWLHCFLAHKYHHTPFVAVYDPRLGA VVVQSHSELREGDVIDVVVEEILKGGVRHV ; ;GSHMASMKFAVIDRKNFTLIHFEIEKPIKPEILKEIEIPSVDTRKGVVISGRGPIWLHCFLAHKYHHTPFVAVYDPRLGA VVVQSHSELREGDVIDVVVEEILKGGVRHV ; A,B ? 2 polyribonucleotide no no GUAA GUAA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 MET n 1 8 LYS n 1 9 PHE n 1 10 ALA n 1 11 VAL n 1 12 ILE n 1 13 ASP n 1 14 ARG n 1 15 LYS n 1 16 ASN n 1 17 PHE n 1 18 THR n 1 19 LEU n 1 20 ILE n 1 21 HIS n 1 22 PHE n 1 23 GLU n 1 24 ILE n 1 25 GLU n 1 26 LYS n 1 27 PRO n 1 28 ILE n 1 29 LYS n 1 30 PRO n 1 31 GLU n 1 32 ILE n 1 33 LEU n 1 34 LYS n 1 35 GLU n 1 36 ILE n 1 37 GLU n 1 38 ILE n 1 39 PRO n 1 40 SER n 1 41 VAL n 1 42 ASP n 1 43 THR n 1 44 ARG n 1 45 LYS n 1 46 GLY n 1 47 VAL n 1 48 VAL n 1 49 ILE n 1 50 SER n 1 51 GLY n 1 52 ARG n 1 53 GLY n 1 54 PRO n 1 55 ILE n 1 56 TRP n 1 57 LEU n 1 58 HIS n 1 59 CYS n 1 60 PHE n 1 61 LEU n 1 62 ALA n 1 63 HIS n 1 64 LYS n 1 65 TYR n 1 66 HIS n 1 67 HIS n 1 68 THR n 1 69 PRO n 1 70 PHE n 1 71 VAL n 1 72 ALA n 1 73 VAL n 1 74 TYR n 1 75 ASP n 1 76 PRO n 1 77 ARG n 1 78 LEU n 1 79 GLY n 1 80 ALA n 1 81 VAL n 1 82 VAL n 1 83 VAL n 1 84 GLN n 1 85 SER n 1 86 HIS n 1 87 SER n 1 88 GLU n 1 89 LEU n 1 90 ARG n 1 91 GLU n 1 92 GLY n 1 93 ASP n 1 94 VAL n 1 95 ILE n 1 96 ASP n 1 97 VAL n 1 98 VAL n 1 99 VAL n 1 100 GLU n 1 101 GLU n 1 102 ILE n 1 103 LEU n 1 104 LYS n 1 105 GLY n 1 106 GLY n 1 107 VAL n 1 108 ARG n 1 109 HIS n 1 110 VAL n 2 1 G n 2 2 U n 2 3 A n 2 4 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AF_1864 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus DSM 4304' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224325 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'ssRNA synthetic' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Y1864_ARCFU O28415 1 ;MKFAVIDRKNFTLIHFEIEKPIKPEILKEIEIPSVDTRKGVVISGRGPIWLHCFLAHKYHHTPFVAVYDPRLGAVVVQSH SELREGDVIDVVVEEILKGGVRHV ; 1 ? 2 PDB 3WZI 3WZI 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3WZI A 7 ? 110 ? O28415 1 ? 104 ? 1 104 2 1 3WZI B 7 ? 110 ? O28415 1 ? 104 ? 1 104 3 2 3WZI C 1 ? 4 ? 3WZI 1 ? 4 ? 1 4 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3WZI GLY A 1 ? UNP O28415 ? ? 'expression tag' -5 1 1 3WZI SER A 2 ? UNP O28415 ? ? 'expression tag' -4 2 1 3WZI HIS A 3 ? UNP O28415 ? ? 'expression tag' -3 3 1 3WZI MET A 4 ? UNP O28415 ? ? 'expression tag' -2 4 1 3WZI ALA A 5 ? UNP O28415 ? ? 'expression tag' -1 5 1 3WZI SER A 6 ? UNP O28415 ? ? 'expression tag' 0 6 2 3WZI GLY B 1 ? UNP O28415 ? ? 'expression tag' -5 7 2 3WZI SER B 2 ? UNP O28415 ? ? 'expression tag' -4 8 2 3WZI HIS B 3 ? UNP O28415 ? ? 'expression tag' -3 9 2 3WZI MET B 4 ? UNP O28415 ? ? 'expression tag' -2 10 2 3WZI ALA B 5 ? UNP O28415 ? ? 'expression tag' -1 11 2 3WZI SER B 6 ? UNP O28415 ? ? 'expression tag' 0 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3WZI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.95 _exptl_crystal.density_percent_sol 75.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'Magnesium chloride, Hepes, Lithium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-11-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.075 # _reflns.entry_id 3WZI _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.9 _reflns.number_obs 11284 _reflns.number_all 11400 _reflns.percent_possible_obs 98.94 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 2.97 _reflns_shell.percent_possible_all 89.31 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3WZI _refine.ls_number_reflns_obs 11284 _refine.ls_number_reflns_all 11400 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.10 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 98.94 _refine.ls_R_factor_obs 0.20831 _refine.ls_R_factor_all 0.20831 _refine.ls_R_factor_R_work 0.20693 _refine.ls_R_factor_R_free 0.23521 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 567 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 77.910 _refine.aniso_B[1][1] 18.44 _refine.aniso_B[2][2] -1.78 _refine.aniso_B[3][3] -16.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.403 _refine.pdbx_overall_ESU_R_Free 0.277 _refine.overall_SU_ML 0.198 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 22.958 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1696 _refine_hist.pdbx_number_atoms_nucleic_acid 84 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 1790 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 46.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.018 0.019 ? 1832 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.005 0.020 ? 1782 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.830 1.912 ? 2499 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.405 3.000 ? 4106 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.190 5.000 ? 210 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 21.517 22.703 ? 74 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.412 15.000 ? 308 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10.516 15.000 ? 12 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.122 0.200 ? 286 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.010 0.021 ? 1931 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.005 0.020 ? 407 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 A 5988 0.13 0.05 'interatomic distance' 1 1 'X-RAY DIFFRACTION' ? ? ? ? ? ? 2 B 5988 0.13 0.05 'interatomic distance' 1 2 'X-RAY DIFFRACTION' ? ? ? ? ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.895 _refine_ls_shell.d_res_low 2.970 _refine_ls_shell.number_reflns_R_work 749 _refine_ls_shell.R_factor_R_work 0.367 _refine_ls_shell.percent_reflns_obs 89.31 _refine_ls_shell.R_factor_R_free 0.495 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A -1 A 104 0 0 ? ? ? ? ? ? ? ? 1 ? 2 B -1 B 104 0 0 ? ? ? ? ? ? ? ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3WZI _struct.title 'Crystal structure of AfCsx3 in complex with ssRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WZI _struct_keywords.pdbx_keywords TRANSCRIPTION/RNA _struct_keywords.text 'Exonuclease, deadenylation activity, TRANSCRIPTION-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 29 ? GLU A 35 ? LYS A 23 GLU A 29 5 ? 7 HELX_P HELX_P2 2 PRO A 54 ? TYR A 65 ? PRO A 48 TYR A 59 1 ? 12 HELX_P HELX_P3 3 VAL A 98 ? LEU A 103 ? VAL A 92 LEU A 97 1 ? 6 HELX_P HELX_P4 4 LYS B 29 ? GLU B 35 ? LYS B 23 GLU B 29 5 ? 7 HELX_P HELX_P5 5 PRO B 54 ? TYR B 65 ? PRO B 48 TYR B 59 1 ? 12 HELX_P HELX_P6 6 VAL B 98 ? LEU B 103 ? VAL B 92 LEU B 97 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 7 ? ARG A 14 ? MET A 1 ARG A 8 A 2 PHE A 17 ? ILE A 24 ? PHE A 11 ILE A 18 A 3 VAL A 47 ? GLY A 51 ? VAL A 41 GLY A 45 A 4 PHE A 70 ? ASP A 75 ? PHE A 64 ASP A 69 A 5 GLY A 79 ? SER A 85 ? GLY A 73 SER A 79 A 6 VAL A 94 ? ILE A 95 ? VAL A 88 ILE A 89 B 1 MET B 7 ? ARG B 14 ? MET B 1 ARG B 8 B 2 PHE B 17 ? ILE B 24 ? PHE B 11 ILE B 18 B 3 VAL B 47 ? SER B 50 ? VAL B 41 SER B 44 B 4 PHE B 70 ? ASP B 75 ? PHE B 64 ASP B 69 B 5 GLY B 79 ? SER B 85 ? GLY B 73 SER B 79 B 6 VAL B 94 ? ILE B 95 ? VAL B 88 ILE B 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 12 ? N ILE A 6 O LEU A 19 ? O LEU A 13 A 2 3 N ILE A 20 ? N ILE A 14 O VAL A 48 ? O VAL A 42 A 3 4 N ILE A 49 ? N ILE A 43 O TYR A 74 ? O TYR A 68 A 4 5 N VAL A 71 ? N VAL A 65 O VAL A 83 ? O VAL A 77 A 5 6 N ALA A 80 ? N ALA A 74 O ILE A 95 ? O ILE A 89 B 1 2 N ILE B 12 ? N ILE B 6 O LEU B 19 ? O LEU B 13 B 2 3 N ILE B 20 ? N ILE B 14 O VAL B 48 ? O VAL B 42 B 3 4 N ILE B 49 ? N ILE B 43 O TYR B 74 ? O TYR B 68 B 4 5 N VAL B 71 ? N VAL B 65 O VAL B 83 ? O VAL B 77 B 5 6 N ALA B 80 ? N ALA B 74 O ILE B 95 ? O ILE B 89 # _database_PDB_matrix.entry_id 3WZI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3WZI _atom_sites.fract_transf_matrix[1][1] 0.014051 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012454 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005518 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 ? ? ? A . n A 1 2 SER 2 -4 ? ? ? A . n A 1 3 HIS 3 -3 ? ? ? A . n A 1 4 MET 4 -2 ? ? ? A . n A 1 5 ALA 5 -1 -1 ALA ALA A . n A 1 6 SER 6 0 0 SER SER A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 LYS 8 2 2 LYS LYS A . n A 1 9 PHE 9 3 3 PHE PHE A . n A 1 10 ALA 10 4 4 ALA ALA A . n A 1 11 VAL 11 5 5 VAL VAL A . n A 1 12 ILE 12 6 6 ILE ILE A . n A 1 13 ASP 13 7 7 ASP ASP A . n A 1 14 ARG 14 8 8 ARG ARG A . n A 1 15 LYS 15 9 9 LYS LYS A . n A 1 16 ASN 16 10 10 ASN ASN A . n A 1 17 PHE 17 11 11 PHE PHE A . n A 1 18 THR 18 12 12 THR THR A . n A 1 19 LEU 19 13 13 LEU LEU A . n A 1 20 ILE 20 14 14 ILE ILE A . n A 1 21 HIS 21 15 15 HIS HIS A . n A 1 22 PHE 22 16 16 PHE PHE A . n A 1 23 GLU 23 17 17 GLU GLU A . n A 1 24 ILE 24 18 18 ILE ILE A . n A 1 25 GLU 25 19 19 GLU GLU A . n A 1 26 LYS 26 20 20 LYS LYS A . n A 1 27 PRO 27 21 21 PRO PRO A . n A 1 28 ILE 28 22 22 ILE ILE A . n A 1 29 LYS 29 23 23 LYS LYS A . n A 1 30 PRO 30 24 24 PRO PRO A . n A 1 31 GLU 31 25 25 GLU GLU A . n A 1 32 ILE 32 26 26 ILE ILE A . n A 1 33 LEU 33 27 27 LEU LEU A . n A 1 34 LYS 34 28 28 LYS LYS A . n A 1 35 GLU 35 29 29 GLU GLU A . n A 1 36 ILE 36 30 30 ILE ILE A . n A 1 37 GLU 37 31 31 GLU GLU A . n A 1 38 ILE 38 32 32 ILE ILE A . n A 1 39 PRO 39 33 33 PRO PRO A . n A 1 40 SER 40 34 34 SER SER A . n A 1 41 VAL 41 35 35 VAL VAL A . n A 1 42 ASP 42 36 36 ASP ASP A . n A 1 43 THR 43 37 37 THR THR A . n A 1 44 ARG 44 38 38 ARG ARG A . n A 1 45 LYS 45 39 39 LYS LYS A . n A 1 46 GLY 46 40 40 GLY GLY A . n A 1 47 VAL 47 41 41 VAL VAL A . n A 1 48 VAL 48 42 42 VAL VAL A . n A 1 49 ILE 49 43 43 ILE ILE A . n A 1 50 SER 50 44 44 SER SER A . n A 1 51 GLY 51 45 45 GLY GLY A . n A 1 52 ARG 52 46 46 ARG ARG A . n A 1 53 GLY 53 47 47 GLY GLY A . n A 1 54 PRO 54 48 48 PRO PRO A . n A 1 55 ILE 55 49 49 ILE ILE A . n A 1 56 TRP 56 50 50 TRP TRP A . n A 1 57 LEU 57 51 51 LEU LEU A . n A 1 58 HIS 58 52 52 HIS HIS A . n A 1 59 CYS 59 53 53 CYS CYS A . n A 1 60 PHE 60 54 54 PHE PHE A . n A 1 61 LEU 61 55 55 LEU LEU A . n A 1 62 ALA 62 56 56 ALA ALA A . n A 1 63 HIS 63 57 57 HIS HIS A . n A 1 64 LYS 64 58 58 LYS LYS A . n A 1 65 TYR 65 59 59 TYR TYR A . n A 1 66 HIS 66 60 60 HIS HIS A . n A 1 67 HIS 67 61 61 HIS HIS A . n A 1 68 THR 68 62 62 THR THR A . n A 1 69 PRO 69 63 63 PRO PRO A . n A 1 70 PHE 70 64 64 PHE PHE A . n A 1 71 VAL 71 65 65 VAL VAL A . n A 1 72 ALA 72 66 66 ALA ALA A . n A 1 73 VAL 73 67 67 VAL VAL A . n A 1 74 TYR 74 68 68 TYR TYR A . n A 1 75 ASP 75 69 69 ASP ASP A . n A 1 76 PRO 76 70 70 PRO PRO A . n A 1 77 ARG 77 71 71 ARG ARG A . n A 1 78 LEU 78 72 72 LEU LEU A . n A 1 79 GLY 79 73 73 GLY GLY A . n A 1 80 ALA 80 74 74 ALA ALA A . n A 1 81 VAL 81 75 75 VAL VAL A . n A 1 82 VAL 82 76 76 VAL VAL A . n A 1 83 VAL 83 77 77 VAL VAL A . n A 1 84 GLN 84 78 78 GLN GLN A . n A 1 85 SER 85 79 79 SER SER A . n A 1 86 HIS 86 80 80 HIS HIS A . n A 1 87 SER 87 81 81 SER SER A . n A 1 88 GLU 88 82 82 GLU GLU A . n A 1 89 LEU 89 83 83 LEU LEU A . n A 1 90 ARG 90 84 84 ARG ARG A . n A 1 91 GLU 91 85 85 GLU GLU A . n A 1 92 GLY 92 86 86 GLY GLY A . n A 1 93 ASP 93 87 87 ASP ASP A . n A 1 94 VAL 94 88 88 VAL VAL A . n A 1 95 ILE 95 89 89 ILE ILE A . n A 1 96 ASP 96 90 90 ASP ASP A . n A 1 97 VAL 97 91 91 VAL VAL A . n A 1 98 VAL 98 92 92 VAL VAL A . n A 1 99 VAL 99 93 93 VAL VAL A . n A 1 100 GLU 100 94 94 GLU GLU A . n A 1 101 GLU 101 95 95 GLU GLU A . n A 1 102 ILE 102 96 96 ILE ILE A . n A 1 103 LEU 103 97 97 LEU LEU A . n A 1 104 LYS 104 98 98 LYS LYS A . n A 1 105 GLY 105 99 99 GLY GLY A . n A 1 106 GLY 106 100 100 GLY GLY A . n A 1 107 VAL 107 101 101 VAL VAL A . n A 1 108 ARG 108 102 102 ARG ARG A . n A 1 109 HIS 109 103 103 HIS HIS A . n A 1 110 VAL 110 104 104 VAL VAL A . n B 1 1 GLY 1 -5 ? ? ? B . n B 1 2 SER 2 -4 ? ? ? B . n B 1 3 HIS 3 -3 ? ? ? B . n B 1 4 MET 4 -2 ? ? ? B . n B 1 5 ALA 5 -1 -1 ALA ALA B . n B 1 6 SER 6 0 0 SER SER B . n B 1 7 MET 7 1 1 MET MET B . n B 1 8 LYS 8 2 2 LYS LYS B . n B 1 9 PHE 9 3 3 PHE PHE B . n B 1 10 ALA 10 4 4 ALA ALA B . n B 1 11 VAL 11 5 5 VAL VAL B . n B 1 12 ILE 12 6 6 ILE ILE B . n B 1 13 ASP 13 7 7 ASP ASP B . n B 1 14 ARG 14 8 8 ARG ARG B . n B 1 15 LYS 15 9 9 LYS LYS B . n B 1 16 ASN 16 10 10 ASN ASN B . n B 1 17 PHE 17 11 11 PHE PHE B . n B 1 18 THR 18 12 12 THR THR B . n B 1 19 LEU 19 13 13 LEU LEU B . n B 1 20 ILE 20 14 14 ILE ILE B . n B 1 21 HIS 21 15 15 HIS HIS B . n B 1 22 PHE 22 16 16 PHE PHE B . n B 1 23 GLU 23 17 17 GLU GLU B . n B 1 24 ILE 24 18 18 ILE ILE B . n B 1 25 GLU 25 19 19 GLU GLU B . n B 1 26 LYS 26 20 20 LYS LYS B . n B 1 27 PRO 27 21 21 PRO PRO B . n B 1 28 ILE 28 22 22 ILE ILE B . n B 1 29 LYS 29 23 23 LYS LYS B . n B 1 30 PRO 30 24 24 PRO PRO B . n B 1 31 GLU 31 25 25 GLU GLU B . n B 1 32 ILE 32 26 26 ILE ILE B . n B 1 33 LEU 33 27 27 LEU LEU B . n B 1 34 LYS 34 28 28 LYS LYS B . n B 1 35 GLU 35 29 29 GLU GLU B . n B 1 36 ILE 36 30 30 ILE ILE B . n B 1 37 GLU 37 31 31 GLU GLU B . n B 1 38 ILE 38 32 32 ILE ILE B . n B 1 39 PRO 39 33 33 PRO PRO B . n B 1 40 SER 40 34 34 SER SER B . n B 1 41 VAL 41 35 35 VAL VAL B . n B 1 42 ASP 42 36 36 ASP ASP B . n B 1 43 THR 43 37 37 THR THR B . n B 1 44 ARG 44 38 38 ARG ARG B . n B 1 45 LYS 45 39 39 LYS LYS B . n B 1 46 GLY 46 40 40 GLY GLY B . n B 1 47 VAL 47 41 41 VAL VAL B . n B 1 48 VAL 48 42 42 VAL VAL B . n B 1 49 ILE 49 43 43 ILE ILE B . n B 1 50 SER 50 44 44 SER SER B . n B 1 51 GLY 51 45 45 GLY GLY B . n B 1 52 ARG 52 46 46 ARG ARG B . n B 1 53 GLY 53 47 47 GLY GLY B . n B 1 54 PRO 54 48 48 PRO PRO B . n B 1 55 ILE 55 49 49 ILE ILE B . n B 1 56 TRP 56 50 50 TRP TRP B . n B 1 57 LEU 57 51 51 LEU LEU B . n B 1 58 HIS 58 52 52 HIS HIS B . n B 1 59 CYS 59 53 53 CYS CYS B . n B 1 60 PHE 60 54 54 PHE PHE B . n B 1 61 LEU 61 55 55 LEU LEU B . n B 1 62 ALA 62 56 56 ALA ALA B . n B 1 63 HIS 63 57 57 HIS HIS B . n B 1 64 LYS 64 58 58 LYS LYS B . n B 1 65 TYR 65 59 59 TYR TYR B . n B 1 66 HIS 66 60 60 HIS HIS B . n B 1 67 HIS 67 61 61 HIS HIS B . n B 1 68 THR 68 62 62 THR THR B . n B 1 69 PRO 69 63 63 PRO PRO B . n B 1 70 PHE 70 64 64 PHE PHE B . n B 1 71 VAL 71 65 65 VAL VAL B . n B 1 72 ALA 72 66 66 ALA ALA B . n B 1 73 VAL 73 67 67 VAL VAL B . n B 1 74 TYR 74 68 68 TYR TYR B . n B 1 75 ASP 75 69 69 ASP ASP B . n B 1 76 PRO 76 70 70 PRO PRO B . n B 1 77 ARG 77 71 71 ARG ARG B . n B 1 78 LEU 78 72 72 LEU LEU B . n B 1 79 GLY 79 73 73 GLY GLY B . n B 1 80 ALA 80 74 74 ALA ALA B . n B 1 81 VAL 81 75 75 VAL VAL B . n B 1 82 VAL 82 76 76 VAL VAL B . n B 1 83 VAL 83 77 77 VAL VAL B . n B 1 84 GLN 84 78 78 GLN GLN B . n B 1 85 SER 85 79 79 SER SER B . n B 1 86 HIS 86 80 80 HIS HIS B . n B 1 87 SER 87 81 81 SER SER B . n B 1 88 GLU 88 82 82 GLU GLU B . n B 1 89 LEU 89 83 83 LEU LEU B . n B 1 90 ARG 90 84 84 ARG ARG B . n B 1 91 GLU 91 85 85 GLU GLU B . n B 1 92 GLY 92 86 86 GLY GLY B . n B 1 93 ASP 93 87 87 ASP ASP B . n B 1 94 VAL 94 88 88 VAL VAL B . n B 1 95 ILE 95 89 89 ILE ILE B . n B 1 96 ASP 96 90 90 ASP ASP B . n B 1 97 VAL 97 91 91 VAL VAL B . n B 1 98 VAL 98 92 92 VAL VAL B . n B 1 99 VAL 99 93 93 VAL VAL B . n B 1 100 GLU 100 94 94 GLU GLU B . n B 1 101 GLU 101 95 95 GLU GLU B . n B 1 102 ILE 102 96 96 ILE ILE B . n B 1 103 LEU 103 97 97 LEU LEU B . n B 1 104 LYS 104 98 98 LYS LYS B . n B 1 105 GLY 105 99 99 GLY GLY B . n B 1 106 GLY 106 100 100 GLY GLY B . n B 1 107 VAL 107 101 101 VAL VAL B . n B 1 108 ARG 108 102 102 ARG ARG B . n B 1 109 HIS 109 103 103 HIS HIS B . n B 1 110 VAL 110 104 104 VAL VAL B . n C 2 1 G 1 1 1 G G C . n C 2 2 U 2 2 2 U U C . n C 2 3 A 3 3 3 A A C . n C 2 4 A 4 4 4 A A C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 HOH 1 201 1 HOH HOH A . D 3 HOH 2 202 2 HOH HOH A . D 3 HOH 3 203 3 HOH HOH A . D 3 HOH 4 204 6 HOH HOH A . D 3 HOH 5 205 9 HOH HOH A . D 3 HOH 6 206 10 HOH HOH A . E 3 HOH 1 201 4 HOH HOH B . E 3 HOH 2 202 5 HOH HOH B . E 3 HOH 3 203 7 HOH HOH B . E 3 HOH 4 204 8 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3960 ? 1 MORE -23 ? 1 'SSA (A^2)' 11600 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 202 ? D HOH . 2 1 B HOH 203 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-15 2 'Structure model' 1 1 2022-08-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' database_2 3 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_database_2.pdbx_DOI' 6 2 'Structure model' '_database_2.pdbx_database_accession' 7 2 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -13.4574 11.5231 -13.6715 0.0228 0.2052 0.3468 0.0539 0.0348 -0.0123 0.9802 0.9616 3.6453 0.8149 -0.7840 0.2717 0.0692 -0.0642 -0.0050 -0.0101 0.0197 0.0003 0.0382 -0.1106 -0.2208 'X-RAY DIFFRACTION' 2 ? refined -4.9784 3.7427 -31.4100 0.0679 0.2200 0.3561 0.0668 -0.0107 -0.0336 0.7509 0.8444 4.0551 0.7925 0.3369 0.4420 0.0632 0.1235 -0.1866 0.1104 0.1149 0.0713 0.0817 0.4776 0.1577 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -1 A 104 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B -1 B 104 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.28 _pdbx_validate_rmsd_angle.angle_target_value 109.80 _pdbx_validate_rmsd_angle.angle_deviation 6.48 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 0 ? ? -94.90 32.66 2 1 PHE A 11 ? ? 176.81 167.32 3 1 LYS A 20 ? ? 61.19 -146.95 4 1 HIS A 61 ? ? -68.61 6.00 5 1 SER A 81 ? ? -110.93 -167.36 6 1 LYS B 20 ? ? 73.74 -167.76 7 1 SER B 81 ? ? -106.68 -165.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -5 ? A GLY 1 2 1 Y 1 A SER -4 ? A SER 2 3 1 Y 1 A HIS -3 ? A HIS 3 4 1 Y 1 A MET -2 ? A MET 4 5 1 Y 1 B GLY -5 ? B GLY 1 6 1 Y 1 B SER -4 ? B SER 2 7 1 Y 1 B HIS -3 ? B HIS 3 8 1 Y 1 B MET -2 ? B MET 4 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #