data_3ZBD # _entry.id 3ZBD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZBD PDBE EBI-54679 WWPDB D_1290054679 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZBD _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-11-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Jansson, A.M.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structure of Alphacoronavirus Tgev Nsp1 Has Implications for Coronavirus Nsp1 Function and Evolution.' _citation.journal_abbrev J.Virol. _citation.journal_volume 87 _citation.page_first 2949 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23269811 _citation.pdbx_database_id_DOI 10.1128/JVI.03163-12 # _citation_author.citation_id primary _citation_author.name 'Jansson, A.M.' _citation_author.ordinal 1 # _cell.entry_id 3ZBD _cell.length_a 35.640 _cell.length_b 36.090 _cell.length_c 42.270 _cell.angle_alpha 91.49 _cell.angle_beta 108.85 _cell.angle_gamma 94.20 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZBD _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NON-STRUCTURAL PROTEIN 1' 13020.944 2 ? ? ? ? 2 water nat water 18.015 207 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NSP1, P9' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHMSSKQFKILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDL KPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIA ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHMSSKQFKILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDL KPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 MET n 1 10 SER n 1 11 SER n 1 12 LYS n 1 13 GLN n 1 14 PHE n 1 15 LYS n 1 16 ILE n 1 17 LEU n 1 18 VAL n 1 19 ASN n 1 20 GLU n 1 21 ASP n 1 22 TYR n 1 23 GLN n 1 24 VAL n 1 25 ASN n 1 26 VAL n 1 27 PRO n 1 28 SER n 1 29 LEU n 1 30 PRO n 1 31 ILE n 1 32 ARG n 1 33 ASP n 1 34 VAL n 1 35 LEU n 1 36 GLN n 1 37 GLU n 1 38 ILE n 1 39 LYS n 1 40 TYR n 1 41 CYS n 1 42 TYR n 1 43 ARG n 1 44 ASN n 1 45 GLY n 1 46 PHE n 1 47 GLU n 1 48 GLY n 1 49 TYR n 1 50 VAL n 1 51 PHE n 1 52 VAL n 1 53 PRO n 1 54 GLU n 1 55 TYR n 1 56 CYS n 1 57 ARG n 1 58 ASP n 1 59 LEU n 1 60 VAL n 1 61 ASP n 1 62 CYS n 1 63 ASP n 1 64 ARG n 1 65 LYS n 1 66 ASP n 1 67 HIS n 1 68 TYR n 1 69 VAL n 1 70 ILE n 1 71 GLY n 1 72 VAL n 1 73 LEU n 1 74 GLY n 1 75 ASN n 1 76 GLY n 1 77 VAL n 1 78 SER n 1 79 ASP n 1 80 LEU n 1 81 LYS n 1 82 PRO n 1 83 VAL n 1 84 LEU n 1 85 LEU n 1 86 THR n 1 87 GLU n 1 88 PRO n 1 89 SER n 1 90 VAL n 1 91 MET n 1 92 LEU n 1 93 GLN n 1 94 GLY n 1 95 PHE n 1 96 ILE n 1 97 VAL n 1 98 ARG n 1 99 ALA n 1 100 ASN n 1 101 CYS n 1 102 ASN n 1 103 GLY n 1 104 VAL n 1 105 LEU n 1 106 GLU n 1 107 ASP n 1 108 PHE n 1 109 ASP n 1 110 LEU n 1 111 LYS n 1 112 ILE n 1 113 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PURDUE _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11151 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-AI _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PEXP5 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1A_CVPPU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P0C6V2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ZBD A 9 ? 113 ? P0C6V2 1 ? 105 ? 1 105 2 1 3ZBD B 9 ? 113 ? P0C6V2 1 ? 105 ? 1 105 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZBD MET A 1 ? UNP P0C6V2 ? ? 'expression tag' -7 1 1 3ZBD ALA A 2 ? UNP P0C6V2 ? ? 'expression tag' -6 2 1 3ZBD HIS A 3 ? UNP P0C6V2 ? ? 'expression tag' -5 3 1 3ZBD HIS A 4 ? UNP P0C6V2 ? ? 'expression tag' -4 4 1 3ZBD HIS A 5 ? UNP P0C6V2 ? ? 'expression tag' -3 5 1 3ZBD HIS A 6 ? UNP P0C6V2 ? ? 'expression tag' -2 6 1 3ZBD HIS A 7 ? UNP P0C6V2 ? ? 'expression tag' -1 7 1 3ZBD HIS A 8 ? UNP P0C6V2 ? ? 'expression tag' 0 8 2 3ZBD MET B 1 ? UNP P0C6V2 ? ? 'expression tag' -7 9 2 3ZBD ALA B 2 ? UNP P0C6V2 ? ? 'expression tag' -6 10 2 3ZBD HIS B 3 ? UNP P0C6V2 ? ? 'expression tag' -5 11 2 3ZBD HIS B 4 ? UNP P0C6V2 ? ? 'expression tag' -4 12 2 3ZBD HIS B 5 ? UNP P0C6V2 ? ? 'expression tag' -3 13 2 3ZBD HIS B 6 ? UNP P0C6V2 ? ? 'expression tag' -2 14 2 3ZBD HIS B 7 ? UNP P0C6V2 ? ? 'expression tag' -1 15 2 3ZBD HIS B 8 ? UNP P0C6V2 ? ? 'expression tag' 0 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZBD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '5%(V/VOL) PEG 4000, 200MM AMMONIUM CHLORIDE, 30MM HEPES, 30MM MES, PH 6.2' # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 110 ? 1 2 110 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH ? ? 2 CCD MARRESEARCH ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.873 1.0 2 1.072 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE ID23-2' ESRF ID23-2 0.873 ? 2 SYNCHROTRON 'ESRF BEAMLINE ID14-4' ESRF ID14-4 1.072 ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZBD _reflns.observed_criterion_sigma_I 1.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.40 _reflns.d_resolution_high 1.50 _reflns.number_obs 30811 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.30 _reflns.B_iso_Wilson_estimate 17.72 _reflns.pdbx_redundancy 4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs 0.48 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.00 _reflns_shell.pdbx_redundancy 3.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZBD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 31262 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.05 _refine.ls_d_res_high 1.49 _refine.ls_percent_reflns_obs 96.38 _refine.ls_R_factor_obs 0.1763 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1747 _refine.ls_R_factor_R_free 0.2089 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.91 _refine.ls_number_reflns_R_free 1535 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9592 _refine.correlation_coeff_Fo_to_Fc_free 0.9460 _refine.B_iso_mean 23.26 _refine.aniso_B[1][1] 0.7484 _refine.aniso_B[2][2] 1.4061 _refine.aniso_B[3][3] -2.1545 _refine.aniso_B[1][2] 0.2673 _refine.aniso_B[1][3] 1.7860 _refine.aniso_B[2][3] -1.9738 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'IDEAL-DIST CONTACT TERM CONTACT SETUP. ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.075 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.078 _refine.pdbx_overall_SU_R_Blow_DPI 0.077 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.079 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 3ZBD _refine_analyze.Luzzati_coordinate_error_obs 0.181 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1718 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 1925 _refine_hist.d_res_high 1.49 _refine_hist.d_res_low 26.05 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1755 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.06 ? 2.00 2379 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 611 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 52 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 250 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1755 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 4.68 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 15.16 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 213 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 2019 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 16 _refine_ls_shell.d_res_high 1.49 _refine_ls_shell.d_res_low 1.54 _refine_ls_shell.number_reflns_R_work 2562 _refine_ls_shell.R_factor_R_work 0.2056 _refine_ls_shell.percent_reflns_obs 96.38 _refine_ls_shell.R_factor_R_free 0.2471 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.90 _refine_ls_shell.number_reflns_R_free 132 _refine_ls_shell.number_reflns_all 2694 _refine_ls_shell.R_factor_all 0.2076 # _struct.entry_id 3ZBD _struct.title 'Structure of TGEV nsp1' _struct.pdbx_descriptor 'NON-STRUCTURAL PROTEIN 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZBD _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN, CORONAVIRUS, ALPHACORONAVIRUS, NSP1' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 30 ? GLY A 45 ? PRO A 22 GLY A 37 1 ? 16 HELX_P HELX_P2 2 TYR A 55 ? ASP A 58 ? TYR A 47 ASP A 50 5 ? 4 HELX_P HELX_P3 3 PRO B 30 ? GLY B 45 ? PRO B 22 GLY B 37 1 ? 16 HELX_P HELX_P4 4 TYR B 55 ? ASP B 58 ? TYR B 47 ASP B 50 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 7 ? AB ? 2 ? BA ? 7 ? BB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? parallel AB 1 2 ? parallel BA 1 2 ? anti-parallel BA 2 3 ? parallel BA 3 4 ? anti-parallel BA 4 5 ? anti-parallel BA 5 6 ? anti-parallel BA 6 7 ? parallel BB 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 12 ? VAL A 18 ? LYS A 4 VAL A 10 AA 2 VAL A 104 ? ILE A 112 ? VAL A 96 ILE A 104 AA 3 SER A 78 ? VAL A 83 ? SER A 70 VAL A 75 AA 4 VAL A 69 ? LEU A 73 ? VAL A 61 LEU A 65 AA 5 LEU A 92 ? ARG A 98 ? LEU A 84 ARG A 90 AA 6 TYR A 49 ? PRO A 53 ? TYR A 41 PRO A 45 AA 7 LYS A 12 ? VAL A 18 ? LYS A 4 VAL A 10 AB 1 VAL A 24 ? ASN A 25 ? VAL A 16 ASN A 17 AB 2 VAL A 60 ? ASP A 61 ? VAL A 52 ASP A 53 BA 1 LYS B 12 ? VAL B 18 ? LYS B 4 VAL B 10 BA 2 VAL B 104 ? ILE B 112 ? VAL B 96 ILE B 104 BA 3 SER B 78 ? VAL B 83 ? SER B 70 VAL B 75 BA 4 VAL B 69 ? LEU B 73 ? VAL B 61 LEU B 65 BA 5 LEU B 92 ? ARG B 98 ? LEU B 84 ARG B 90 BA 6 TYR B 49 ? PRO B 53 ? TYR B 41 PRO B 45 BA 7 LYS B 12 ? VAL B 18 ? LYS B 4 VAL B 10 BB 1 VAL B 24 ? VAL B 26 ? VAL B 16 VAL B 18 BB 2 VAL B 60 ? CYS B 62 ? VAL B 52 CYS B 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 18 ? N VAL A 10 O VAL A 104 ? O VAL A 96 AA 2 3 N LYS A 111 ? N LYS A 103 O SER A 78 ? O SER A 70 AA 3 4 N VAL A 83 ? N VAL A 75 O VAL A 69 ? O VAL A 61 AA 4 5 O VAL A 72 ? O VAL A 64 N GLN A 93 ? N GLN A 85 AA 5 6 N VAL A 97 ? N VAL A 89 O VAL A 50 ? O VAL A 42 AA 6 7 N PHE A 51 ? N PHE A 43 O LEU A 17 ? O LEU A 9 AB 1 2 O VAL A 24 ? O VAL A 16 N ASP A 61 ? N ASP A 53 BA 1 2 N VAL B 18 ? N VAL B 10 O VAL B 104 ? O VAL B 96 BA 2 3 N LYS B 111 ? N LYS B 103 O SER B 78 ? O SER B 70 BA 3 4 N VAL B 83 ? N VAL B 75 O VAL B 69 ? O VAL B 61 BA 4 5 O VAL B 72 ? O VAL B 64 N GLN B 93 ? N GLN B 85 BA 5 6 N VAL B 97 ? N VAL B 89 O VAL B 50 ? O VAL B 42 BA 6 7 N PHE B 51 ? N PHE B 43 O LEU B 17 ? O LEU B 9 BB 1 2 N VAL B 26 ? N VAL B 18 O ASP B 61 ? O ASP B 53 # _database_PDB_matrix.entry_id 3ZBD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZBD _atom_sites.fract_transf_matrix[1][1] 0.028058 _atom_sites.fract_transf_matrix[1][2] 0.002060 _atom_sites.fract_transf_matrix[1][3] 0.009701 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027783 _atom_sites.fract_transf_matrix[2][3] 0.001464 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025033 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -7 ? ? ? A . n A 1 2 ALA 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 -4 HIS HIS A . n A 1 5 HIS 5 -3 -3 HIS HIS A . n A 1 6 HIS 6 -2 -2 HIS HIS A . n A 1 7 HIS 7 -1 -1 HIS HIS A . n A 1 8 HIS 8 0 0 HIS HIS A . n A 1 9 MET 9 1 1 MET MET A . n A 1 10 SER 10 2 2 SER SER A . n A 1 11 SER 11 3 3 SER SER A . n A 1 12 LYS 12 4 4 LYS LYS A . n A 1 13 GLN 13 5 5 GLN GLN A . n A 1 14 PHE 14 6 6 PHE PHE A . n A 1 15 LYS 15 7 7 LYS LYS A . n A 1 16 ILE 16 8 8 ILE ILE A . n A 1 17 LEU 17 9 9 LEU LEU A . n A 1 18 VAL 18 10 10 VAL VAL A . n A 1 19 ASN 19 11 11 ASN ASN A . n A 1 20 GLU 20 12 12 GLU GLU A . n A 1 21 ASP 21 13 13 ASP ASP A . n A 1 22 TYR 22 14 14 TYR TYR A . n A 1 23 GLN 23 15 15 GLN GLN A . n A 1 24 VAL 24 16 16 VAL VAL A . n A 1 25 ASN 25 17 17 ASN ASN A . n A 1 26 VAL 26 18 18 VAL VAL A . n A 1 27 PRO 27 19 19 PRO PRO A . n A 1 28 SER 28 20 20 SER SER A . n A 1 29 LEU 29 21 21 LEU LEU A . n A 1 30 PRO 30 22 22 PRO PRO A . n A 1 31 ILE 31 23 23 ILE ILE A . n A 1 32 ARG 32 24 24 ARG ARG A . n A 1 33 ASP 33 25 25 ASP ASP A . n A 1 34 VAL 34 26 26 VAL VAL A . n A 1 35 LEU 35 27 27 LEU LEU A . n A 1 36 GLN 36 28 28 GLN GLN A . n A 1 37 GLU 37 29 29 GLU GLU A . n A 1 38 ILE 38 30 30 ILE ILE A . n A 1 39 LYS 39 31 31 LYS LYS A . n A 1 40 TYR 40 32 32 TYR TYR A . n A 1 41 CYS 41 33 33 CYS CYS A . n A 1 42 TYR 42 34 34 TYR TYR A . n A 1 43 ARG 43 35 35 ARG ARG A . n A 1 44 ASN 44 36 36 ASN ASN A . n A 1 45 GLY 45 37 37 GLY GLY A . n A 1 46 PHE 46 38 38 PHE PHE A . n A 1 47 GLU 47 39 39 GLU GLU A . n A 1 48 GLY 48 40 40 GLY GLY A . n A 1 49 TYR 49 41 41 TYR TYR A . n A 1 50 VAL 50 42 42 VAL VAL A . n A 1 51 PHE 51 43 43 PHE PHE A . n A 1 52 VAL 52 44 44 VAL VAL A . n A 1 53 PRO 53 45 45 PRO PRO A . n A 1 54 GLU 54 46 46 GLU GLU A . n A 1 55 TYR 55 47 47 TYR TYR A . n A 1 56 CYS 56 48 48 CYS CYS A . n A 1 57 ARG 57 49 49 ARG ARG A . n A 1 58 ASP 58 50 50 ASP ASP A . n A 1 59 LEU 59 51 51 LEU LEU A . n A 1 60 VAL 60 52 52 VAL VAL A . n A 1 61 ASP 61 53 53 ASP ASP A . n A 1 62 CYS 62 54 54 CYS CYS A . n A 1 63 ASP 63 55 55 ASP ASP A . n A 1 64 ARG 64 56 56 ARG ARG A . n A 1 65 LYS 65 57 57 LYS LYS A . n A 1 66 ASP 66 58 58 ASP ASP A . n A 1 67 HIS 67 59 59 HIS HIS A . n A 1 68 TYR 68 60 60 TYR TYR A . n A 1 69 VAL 69 61 61 VAL VAL A . n A 1 70 ILE 70 62 62 ILE ILE A . n A 1 71 GLY 71 63 63 GLY GLY A . n A 1 72 VAL 72 64 64 VAL VAL A . n A 1 73 LEU 73 65 65 LEU LEU A . n A 1 74 GLY 74 66 66 GLY GLY A . n A 1 75 ASN 75 67 67 ASN ASN A . n A 1 76 GLY 76 68 68 GLY GLY A . n A 1 77 VAL 77 69 69 VAL VAL A . n A 1 78 SER 78 70 70 SER SER A . n A 1 79 ASP 79 71 71 ASP ASP A . n A 1 80 LEU 80 72 72 LEU LEU A . n A 1 81 LYS 81 73 73 LYS LYS A . n A 1 82 PRO 82 74 74 PRO PRO A . n A 1 83 VAL 83 75 75 VAL VAL A . n A 1 84 LEU 84 76 76 LEU LEU A . n A 1 85 LEU 85 77 77 LEU LEU A . n A 1 86 THR 86 78 78 THR THR A . n A 1 87 GLU 87 79 79 GLU GLU A . n A 1 88 PRO 88 80 80 PRO PRO A . n A 1 89 SER 89 81 81 SER SER A . n A 1 90 VAL 90 82 82 VAL VAL A . n A 1 91 MET 91 83 83 MET MET A . n A 1 92 LEU 92 84 84 LEU LEU A . n A 1 93 GLN 93 85 85 GLN GLN A . n A 1 94 GLY 94 86 86 GLY GLY A . n A 1 95 PHE 95 87 87 PHE PHE A . n A 1 96 ILE 96 88 88 ILE ILE A . n A 1 97 VAL 97 89 89 VAL VAL A . n A 1 98 ARG 98 90 90 ARG ARG A . n A 1 99 ALA 99 91 91 ALA ALA A . n A 1 100 ASN 100 92 92 ASN ASN A . n A 1 101 CYS 101 93 93 CYS CYS A . n A 1 102 ASN 102 94 94 ASN ASN A . n A 1 103 GLY 103 95 95 GLY GLY A . n A 1 104 VAL 104 96 96 VAL VAL A . n A 1 105 LEU 105 97 97 LEU LEU A . n A 1 106 GLU 106 98 98 GLU GLU A . n A 1 107 ASP 107 99 99 ASP ASP A . n A 1 108 PHE 108 100 100 PHE PHE A . n A 1 109 ASP 109 101 101 ASP ASP A . n A 1 110 LEU 110 102 102 LEU LEU A . n A 1 111 LYS 111 103 103 LYS LYS A . n A 1 112 ILE 112 104 104 ILE ILE A . n A 1 113 ALA 113 105 105 ALA ALA A . n B 1 1 MET 1 -7 ? ? ? B . n B 1 2 ALA 2 -6 ? ? ? B . n B 1 3 HIS 3 -5 ? ? ? B . n B 1 4 HIS 4 -4 ? ? ? B . n B 1 5 HIS 5 -3 ? ? ? B . n B 1 6 HIS 6 -2 ? ? ? B . n B 1 7 HIS 7 -1 ? ? ? B . n B 1 8 HIS 8 0 ? ? ? B . n B 1 9 MET 9 1 ? ? ? B . n B 1 10 SER 10 2 ? ? ? B . n B 1 11 SER 11 3 3 SER SER B . n B 1 12 LYS 12 4 4 LYS LYS B . n B 1 13 GLN 13 5 5 GLN GLN B . n B 1 14 PHE 14 6 6 PHE PHE B . n B 1 15 LYS 15 7 7 LYS LYS B . n B 1 16 ILE 16 8 8 ILE ILE B . n B 1 17 LEU 17 9 9 LEU LEU B . n B 1 18 VAL 18 10 10 VAL VAL B . n B 1 19 ASN 19 11 11 ASN ASN B . n B 1 20 GLU 20 12 12 GLU GLU B . n B 1 21 ASP 21 13 13 ASP ASP B . n B 1 22 TYR 22 14 14 TYR TYR B . n B 1 23 GLN 23 15 15 GLN GLN B . n B 1 24 VAL 24 16 16 VAL VAL B . n B 1 25 ASN 25 17 17 ASN ASN B . n B 1 26 VAL 26 18 18 VAL VAL B . n B 1 27 PRO 27 19 19 PRO PRO B . n B 1 28 SER 28 20 20 SER SER B . n B 1 29 LEU 29 21 21 LEU LEU B . n B 1 30 PRO 30 22 22 PRO PRO B . n B 1 31 ILE 31 23 23 ILE ILE B . n B 1 32 ARG 32 24 24 ARG ARG B . n B 1 33 ASP 33 25 25 ASP ASP B . n B 1 34 VAL 34 26 26 VAL VAL B . n B 1 35 LEU 35 27 27 LEU LEU B . n B 1 36 GLN 36 28 28 GLN GLN B . n B 1 37 GLU 37 29 29 GLU GLU B . n B 1 38 ILE 38 30 30 ILE ILE B . n B 1 39 LYS 39 31 31 LYS LYS B . n B 1 40 TYR 40 32 32 TYR TYR B . n B 1 41 CYS 41 33 33 CYS CYS B . n B 1 42 TYR 42 34 34 TYR TYR B . n B 1 43 ARG 43 35 35 ARG ARG B . n B 1 44 ASN 44 36 36 ASN ASN B . n B 1 45 GLY 45 37 37 GLY GLY B . n B 1 46 PHE 46 38 38 PHE PHE B . n B 1 47 GLU 47 39 39 GLU GLU B . n B 1 48 GLY 48 40 40 GLY GLY B . n B 1 49 TYR 49 41 41 TYR TYR B . n B 1 50 VAL 50 42 42 VAL VAL B . n B 1 51 PHE 51 43 43 PHE PHE B . n B 1 52 VAL 52 44 44 VAL VAL B . n B 1 53 PRO 53 45 45 PRO PRO B . n B 1 54 GLU 54 46 46 GLU GLU B . n B 1 55 TYR 55 47 47 TYR TYR B . n B 1 56 CYS 56 48 48 CYS CYS B . n B 1 57 ARG 57 49 49 ARG ARG B . n B 1 58 ASP 58 50 50 ASP ASP B . n B 1 59 LEU 59 51 51 LEU LEU B . n B 1 60 VAL 60 52 52 VAL VAL B . n B 1 61 ASP 61 53 53 ASP ASP B . n B 1 62 CYS 62 54 54 CYS CYS B . n B 1 63 ASP 63 55 55 ASP ASP B . n B 1 64 ARG 64 56 56 ARG ARG B . n B 1 65 LYS 65 57 57 LYS LYS B . n B 1 66 ASP 66 58 58 ASP ASP B . n B 1 67 HIS 67 59 59 HIS HIS B . n B 1 68 TYR 68 60 60 TYR TYR B . n B 1 69 VAL 69 61 61 VAL VAL B . n B 1 70 ILE 70 62 62 ILE ILE B . n B 1 71 GLY 71 63 63 GLY GLY B . n B 1 72 VAL 72 64 64 VAL VAL B . n B 1 73 LEU 73 65 65 LEU LEU B . n B 1 74 GLY 74 66 66 GLY GLY B . n B 1 75 ASN 75 67 67 ASN ASN B . n B 1 76 GLY 76 68 68 GLY GLY B . n B 1 77 VAL 77 69 69 VAL VAL B . n B 1 78 SER 78 70 70 SER SER B . n B 1 79 ASP 79 71 71 ASP ASP B . n B 1 80 LEU 80 72 72 LEU LEU B . n B 1 81 LYS 81 73 73 LYS LYS B . n B 1 82 PRO 82 74 74 PRO PRO B . n B 1 83 VAL 83 75 75 VAL VAL B . n B 1 84 LEU 84 76 76 LEU LEU B . n B 1 85 LEU 85 77 77 LEU LEU B . n B 1 86 THR 86 78 78 THR THR B . n B 1 87 GLU 87 79 79 GLU GLU B . n B 1 88 PRO 88 80 80 PRO PRO B . n B 1 89 SER 89 81 81 SER SER B . n B 1 90 VAL 90 82 82 VAL VAL B . n B 1 91 MET 91 83 83 MET MET B . n B 1 92 LEU 92 84 84 LEU LEU B . n B 1 93 GLN 93 85 85 GLN GLN B . n B 1 94 GLY 94 86 86 GLY GLY B . n B 1 95 PHE 95 87 87 PHE PHE B . n B 1 96 ILE 96 88 88 ILE ILE B . n B 1 97 VAL 97 89 89 VAL VAL B . n B 1 98 ARG 98 90 90 ARG ARG B . n B 1 99 ALA 99 91 91 ALA ALA B . n B 1 100 ASN 100 92 92 ASN ASN B . n B 1 101 CYS 101 93 93 CYS CYS B . n B 1 102 ASN 102 94 94 ASN ASN B . n B 1 103 GLY 103 95 95 GLY GLY B . n B 1 104 VAL 104 96 96 VAL VAL B . n B 1 105 LEU 105 97 97 LEU LEU B . n B 1 106 GLU 106 98 98 GLU GLU B . n B 1 107 ASP 107 99 99 ASP ASP B . n B 1 108 PHE 108 100 100 PHE PHE B . n B 1 109 ASP 109 101 101 ASP ASP B . n B 1 110 LEU 110 102 102 LEU LEU B . n B 1 111 LYS 111 103 103 LYS LYS B . n B 1 112 ILE 112 104 104 ILE ILE B . n B 1 113 ALA 113 105 105 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 2001 2001 HOH HOH A . C 2 HOH 2 2002 2002 HOH HOH A . C 2 HOH 3 2003 2003 HOH HOH A . C 2 HOH 4 2004 2004 HOH HOH A . C 2 HOH 5 2005 2005 HOH HOH A . C 2 HOH 6 2006 2006 HOH HOH A . C 2 HOH 7 2007 2007 HOH HOH A . C 2 HOH 8 2008 2008 HOH HOH A . C 2 HOH 9 2009 2009 HOH HOH A . C 2 HOH 10 2010 2010 HOH HOH A . C 2 HOH 11 2011 2011 HOH HOH A . C 2 HOH 12 2012 2012 HOH HOH A . C 2 HOH 13 2013 2013 HOH HOH A . C 2 HOH 14 2014 2014 HOH HOH A . C 2 HOH 15 2015 2015 HOH HOH A . C 2 HOH 16 2016 2016 HOH HOH A . C 2 HOH 17 2017 2017 HOH HOH A . C 2 HOH 18 2018 2018 HOH HOH A . C 2 HOH 19 2019 2019 HOH HOH A . C 2 HOH 20 2020 2020 HOH HOH A . C 2 HOH 21 2021 2021 HOH HOH A . C 2 HOH 22 2022 2022 HOH HOH A . C 2 HOH 23 2023 2023 HOH HOH A . C 2 HOH 24 2024 2024 HOH HOH A . C 2 HOH 25 2025 2025 HOH HOH A . C 2 HOH 26 2026 2026 HOH HOH A . C 2 HOH 27 2027 2027 HOH HOH A . C 2 HOH 28 2028 2028 HOH HOH A . C 2 HOH 29 2029 2029 HOH HOH A . C 2 HOH 30 2030 2030 HOH HOH A . C 2 HOH 31 2031 2031 HOH HOH A . C 2 HOH 32 2032 2032 HOH HOH A . C 2 HOH 33 2033 2033 HOH HOH A . C 2 HOH 34 2034 2034 HOH HOH A . C 2 HOH 35 2035 2035 HOH HOH A . C 2 HOH 36 2036 2036 HOH HOH A . C 2 HOH 37 2037 2037 HOH HOH A . C 2 HOH 38 2038 2038 HOH HOH A . C 2 HOH 39 2039 2039 HOH HOH A . C 2 HOH 40 2040 2040 HOH HOH A . C 2 HOH 41 2041 2041 HOH HOH A . C 2 HOH 42 2042 2042 HOH HOH A . C 2 HOH 43 2043 2043 HOH HOH A . C 2 HOH 44 2044 2044 HOH HOH A . C 2 HOH 45 2045 2045 HOH HOH A . C 2 HOH 46 2046 2046 HOH HOH A . C 2 HOH 47 2047 2047 HOH HOH A . C 2 HOH 48 2048 2048 HOH HOH A . C 2 HOH 49 2049 2049 HOH HOH A . C 2 HOH 50 2050 2050 HOH HOH A . C 2 HOH 51 2051 2051 HOH HOH A . C 2 HOH 52 2052 2052 HOH HOH A . C 2 HOH 53 2053 2053 HOH HOH A . C 2 HOH 54 2054 2054 HOH HOH A . C 2 HOH 55 2055 2055 HOH HOH A . C 2 HOH 56 2056 2056 HOH HOH A . C 2 HOH 57 2057 2057 HOH HOH A . C 2 HOH 58 2058 2058 HOH HOH A . C 2 HOH 59 2059 2059 HOH HOH A . C 2 HOH 60 2060 2060 HOH HOH A . C 2 HOH 61 2061 2061 HOH HOH A . C 2 HOH 62 2062 2062 HOH HOH A . C 2 HOH 63 2063 2063 HOH HOH A . C 2 HOH 64 2064 2064 HOH HOH A . C 2 HOH 65 2065 2065 HOH HOH A . C 2 HOH 66 2066 2066 HOH HOH A . C 2 HOH 67 2067 2067 HOH HOH A . C 2 HOH 68 2068 2068 HOH HOH A . C 2 HOH 69 2069 2069 HOH HOH A . C 2 HOH 70 2070 2070 HOH HOH A . C 2 HOH 71 2071 2071 HOH HOH A . C 2 HOH 72 2072 2072 HOH HOH A . C 2 HOH 73 2073 2073 HOH HOH A . C 2 HOH 74 2074 2074 HOH HOH A . C 2 HOH 75 2075 2075 HOH HOH A . C 2 HOH 76 2076 2076 HOH HOH A . C 2 HOH 77 2077 2077 HOH HOH A . C 2 HOH 78 2078 2078 HOH HOH A . C 2 HOH 79 2079 2079 HOH HOH A . C 2 HOH 80 2080 2080 HOH HOH A . C 2 HOH 81 2081 2081 HOH HOH A . C 2 HOH 82 2082 2082 HOH HOH A . C 2 HOH 83 2083 2083 HOH HOH A . C 2 HOH 84 2084 2084 HOH HOH A . C 2 HOH 85 2085 2085 HOH HOH A . C 2 HOH 86 2086 2086 HOH HOH A . C 2 HOH 87 2087 2087 HOH HOH A . C 2 HOH 88 2088 2088 HOH HOH A . C 2 HOH 89 2089 2089 HOH HOH A . C 2 HOH 90 2090 2090 HOH HOH A . C 2 HOH 91 2091 2091 HOH HOH A . C 2 HOH 92 2092 2092 HOH HOH A . C 2 HOH 93 2093 2093 HOH HOH A . C 2 HOH 94 2094 2094 HOH HOH A . C 2 HOH 95 2095 2095 HOH HOH A . C 2 HOH 96 2096 2096 HOH HOH A . C 2 HOH 97 2097 2097 HOH HOH A . C 2 HOH 98 2098 2098 HOH HOH A . C 2 HOH 99 2099 2099 HOH HOH A . C 2 HOH 100 2100 2100 HOH HOH A . C 2 HOH 101 2101 2101 HOH HOH A . C 2 HOH 102 2102 2102 HOH HOH A . C 2 HOH 103 2103 2103 HOH HOH A . C 2 HOH 104 2104 2104 HOH HOH A . C 2 HOH 105 2105 2105 HOH HOH A . C 2 HOH 106 2106 2106 HOH HOH A . C 2 HOH 107 2107 2107 HOH HOH A . C 2 HOH 108 2108 2108 HOH HOH A . C 2 HOH 109 2109 2109 HOH HOH A . C 2 HOH 110 2110 2110 HOH HOH A . C 2 HOH 111 2111 2111 HOH HOH A . C 2 HOH 112 2112 2112 HOH HOH A . C 2 HOH 113 2113 2113 HOH HOH A . C 2 HOH 114 2114 2114 HOH HOH A . C 2 HOH 115 2115 2115 HOH HOH A . C 2 HOH 116 2116 2116 HOH HOH A . C 2 HOH 117 2117 2117 HOH HOH A . C 2 HOH 118 2118 2118 HOH HOH A . C 2 HOH 119 2119 2119 HOH HOH A . C 2 HOH 120 2120 2120 HOH HOH A . C 2 HOH 121 2121 2121 HOH HOH A . D 2 HOH 1 2001 2001 HOH HOH B . D 2 HOH 2 2002 2002 HOH HOH B . D 2 HOH 3 2003 2003 HOH HOH B . D 2 HOH 4 2004 2004 HOH HOH B . D 2 HOH 5 2005 2005 HOH HOH B . D 2 HOH 6 2006 2006 HOH HOH B . D 2 HOH 7 2007 2007 HOH HOH B . D 2 HOH 8 2008 2008 HOH HOH B . D 2 HOH 9 2009 2009 HOH HOH B . D 2 HOH 10 2010 2010 HOH HOH B . D 2 HOH 11 2011 2011 HOH HOH B . D 2 HOH 12 2012 2012 HOH HOH B . D 2 HOH 13 2013 2013 HOH HOH B . D 2 HOH 14 2014 2014 HOH HOH B . D 2 HOH 15 2015 2015 HOH HOH B . D 2 HOH 16 2016 2016 HOH HOH B . D 2 HOH 17 2017 2017 HOH HOH B . D 2 HOH 18 2018 2018 HOH HOH B . D 2 HOH 19 2019 2019 HOH HOH B . D 2 HOH 20 2020 2020 HOH HOH B . D 2 HOH 21 2021 2021 HOH HOH B . D 2 HOH 22 2022 2022 HOH HOH B . D 2 HOH 23 2023 2023 HOH HOH B . D 2 HOH 24 2024 2024 HOH HOH B . D 2 HOH 25 2025 2025 HOH HOH B . D 2 HOH 26 2026 2026 HOH HOH B . D 2 HOH 27 2027 2027 HOH HOH B . D 2 HOH 28 2028 2028 HOH HOH B . D 2 HOH 29 2029 2029 HOH HOH B . D 2 HOH 30 2030 2030 HOH HOH B . D 2 HOH 31 2031 2031 HOH HOH B . D 2 HOH 32 2032 2032 HOH HOH B . D 2 HOH 33 2033 2033 HOH HOH B . D 2 HOH 34 2034 2034 HOH HOH B . D 2 HOH 35 2035 2035 HOH HOH B . D 2 HOH 36 2036 2036 HOH HOH B . D 2 HOH 37 2037 2037 HOH HOH B . D 2 HOH 38 2038 2038 HOH HOH B . D 2 HOH 39 2039 2039 HOH HOH B . D 2 HOH 40 2040 2040 HOH HOH B . D 2 HOH 41 2041 2041 HOH HOH B . D 2 HOH 42 2042 2042 HOH HOH B . D 2 HOH 43 2043 2043 HOH HOH B . D 2 HOH 44 2044 2044 HOH HOH B . D 2 HOH 45 2045 2045 HOH HOH B . D 2 HOH 46 2046 2046 HOH HOH B . D 2 HOH 47 2047 2047 HOH HOH B . D 2 HOH 48 2048 2048 HOH HOH B . D 2 HOH 49 2049 2049 HOH HOH B . D 2 HOH 50 2050 2050 HOH HOH B . D 2 HOH 51 2051 2051 HOH HOH B . D 2 HOH 52 2052 2052 HOH HOH B . D 2 HOH 53 2053 2053 HOH HOH B . D 2 HOH 54 2054 2054 HOH HOH B . D 2 HOH 55 2055 2055 HOH HOH B . D 2 HOH 56 2056 2056 HOH HOH B . D 2 HOH 57 2057 2057 HOH HOH B . D 2 HOH 58 2058 2058 HOH HOH B . D 2 HOH 59 2059 2059 HOH HOH B . D 2 HOH 60 2060 2060 HOH HOH B . D 2 HOH 61 2061 2061 HOH HOH B . D 2 HOH 62 2062 2062 HOH HOH B . D 2 HOH 63 2063 2063 HOH HOH B . D 2 HOH 64 2064 2064 HOH HOH B . D 2 HOH 65 2065 2065 HOH HOH B . D 2 HOH 66 2066 2066 HOH HOH B . D 2 HOH 67 2067 2067 HOH HOH B . D 2 HOH 68 2068 2068 HOH HOH B . D 2 HOH 69 2069 2069 HOH HOH B . D 2 HOH 70 2070 2070 HOH HOH B . D 2 HOH 71 2071 2071 HOH HOH B . D 2 HOH 72 2072 2072 HOH HOH B . D 2 HOH 73 2073 2073 HOH HOH B . D 2 HOH 74 2074 2074 HOH HOH B . D 2 HOH 75 2075 2075 HOH HOH B . D 2 HOH 76 2076 2076 HOH HOH B . D 2 HOH 77 2077 2077 HOH HOH B . D 2 HOH 78 2078 2078 HOH HOH B . D 2 HOH 79 2079 2079 HOH HOH B . D 2 HOH 80 2080 2080 HOH HOH B . D 2 HOH 81 2081 2081 HOH HOH B . D 2 HOH 82 2082 2082 HOH HOH B . D 2 HOH 83 2083 2083 HOH HOH B . D 2 HOH 84 2084 2084 HOH HOH B . D 2 HOH 85 2085 2085 HOH HOH B . D 2 HOH 86 2086 2086 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-09 2 'Structure model' 1 1 2013-02-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -22.1337 -4.5965 27.4639 -0.0655 -0.0460 -0.0008 -0.0055 -0.0334 0.0162 0.7724 2.3685 0.6886 -0.2262 -0.0249 -0.1232 -0.0092 -0.0205 0.0897 0.1839 -0.0130 -0.3266 0.0437 0.0468 0.0222 'X-RAY DIFFRACTION' 2 ? refined -14.5367 13.5095 49.6154 -0.0098 -0.0373 -0.0877 0.0161 0.0165 -0.0033 1.5025 2.9809 1.1636 -0.1592 0.2037 -0.8795 0.0096 0.1195 -0.0023 -0.3587 -0.0050 -0.0463 0.0898 0.0585 -0.0045 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN B' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.10.0 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 3ZBD _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'CHAIN 1 (1-110) FEATURE IDENTIFIER PRO_0000338303' # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 2 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -143.62 _pdbx_validate_torsion.psi 26.61 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2030 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.98 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -7 ? A MET 1 2 1 Y 1 A ALA -6 ? A ALA 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 B MET -7 ? B MET 1 5 1 Y 1 B ALA -6 ? B ALA 2 6 1 Y 1 B HIS -5 ? B HIS 3 7 1 Y 1 B HIS -4 ? B HIS 4 8 1 Y 1 B HIS -3 ? B HIS 5 9 1 Y 1 B HIS -2 ? B HIS 6 10 1 Y 1 B HIS -1 ? B HIS 7 11 1 Y 1 B HIS 0 ? B HIS 8 12 1 Y 1 B MET 1 ? B MET 9 13 1 Y 1 B SER 2 ? B SER 10 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #