data_3ZF4 # _entry.id 3ZF4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ZF4 pdb_00003zf4 10.2210/pdb3zf4/pdb PDBE EBI-55058 ? ? WWPDB D_1290055058 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 3ZEZ unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE WITH DUPNHPP). ; PDB 3ZF0 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81A MUTANT WITH DUPNHPP). ; PDB 3ZF1 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81N MUTANT WITH DUPNHPP). ; PDB 3ZF2 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE). ; PDB 3ZF3 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y84I MUTANT). ; PDB 3ZF5 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE Y84F MUTANT WITH DUPNHPP). ; PDB 3ZF6 unspecified ;PHAGE DUTPASES CONTROL TRANSFER OF VIRULENCE GENES BY A PROTO-ONCOGENIC G PROTEIN-LIKE MECHANISM. ( STAPHYLOCOCCUS BACTERIOPHAGE 80ALPHA DUTPASE D81A D110C S168C MUTANT WITH DUPNHPP). ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZF4 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-12-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tormo-Mas, M.A.' 1 'Donderis, J.' 2 'Garcia-Caballer, M.' 3 'Alt, A.' 4 'Mir-Sanchis, I.' 5 'Marina, A.' 6 'Penades, J.R.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism.' Mol.Cell 49 947 ? 2013 MOCEFL US 1097-2765 2168 ? 23333307 10.1016/J.MOLCEL.2012.12.013 1 'Moonlighting Bacteriophage Proteins Derepress Staphylococcal Pathogenicity Islands.' Nature 465 779 ? 2010 NATUAS UK 0028-0836 0006 ? 20473284 10.1038/NATURE09065 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tormo-Mas, M.A.' 1 ? primary 'Donderis, J.' 2 ? primary 'Garcia-Caballer, M.' 3 ? primary 'Alt, A.' 4 ? primary 'Mir-Sanchis, I.' 5 ? primary 'Marina, A.' 6 ? primary 'Penades, J.R.' 7 ? 1 'Tormo-Mas, M.A.' 8 ? 1 'Mir, I.' 9 ? 1 'Shrestha, A.' 10 ? 1 'Tallent, S.M.' 11 ? 1 'Campoy, S.' 12 ? 1 'Lasa, I.' 13 ? 1 'Barbe, J.' 14 ? 1 'Novick, R.P.' 15 ? 1 'Christie, G.E.' 16 ? 1 'Penades, J.R.' 17 ? # _cell.entry_id 3ZF4 _cell.length_a 87.470 _cell.length_b 87.470 _cell.length_c 87.470 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZF4 _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man DUTPASE 22575.529 1 3.6.1.23 YES ? 'STRUCTURE IN PRESENCE OF DUPNHPP AND MAGNESIUM' 2 non-polymer syn ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; 467.157 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'NICKEL (II) ION' 58.693 2 ? ? ? ? 5 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIK TDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGAHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGS YRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIK TDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGAHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGS YRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 SER n 1 24 MET n 1 25 THR n 1 26 GLY n 1 27 GLY n 1 28 GLN n 1 29 GLN n 1 30 MET n 1 31 GLY n 1 32 ARG n 1 33 GLY n 1 34 SER n 1 35 MET n 1 36 THR n 1 37 ASN n 1 38 THR n 1 39 LEU n 1 40 GLN n 1 41 VAL n 1 42 LYS n 1 43 LEU n 1 44 LEU n 1 45 SER n 1 46 LYS n 1 47 ASN n 1 48 ALA n 1 49 ARG n 1 50 MET n 1 51 PRO n 1 52 GLU n 1 53 ARG n 1 54 ASN n 1 55 HIS n 1 56 LYS n 1 57 THR n 1 58 ASP n 1 59 ALA n 1 60 GLY n 1 61 TYR n 1 62 ASP n 1 63 ILE n 1 64 PHE n 1 65 SER n 1 66 ALA n 1 67 GLU n 1 68 THR n 1 69 VAL n 1 70 VAL n 1 71 LEU n 1 72 GLU n 1 73 PRO n 1 74 GLN n 1 75 GLU n 1 76 LYS n 1 77 ALA n 1 78 VAL n 1 79 ILE n 1 80 LYS n 1 81 THR n 1 82 ASP n 1 83 VAL n 1 84 ALA n 1 85 VAL n 1 86 SER n 1 87 ILE n 1 88 PRO n 1 89 GLU n 1 90 GLY n 1 91 TYR n 1 92 VAL n 1 93 GLY n 1 94 LEU n 1 95 LEU n 1 96 THR n 1 97 SER n 1 98 ARG n 1 99 SER n 1 100 GLY n 1 101 VAL n 1 102 SER n 1 103 SER n 1 104 LYS n 1 105 THR n 1 106 HIS n 1 107 LEU n 1 108 VAL n 1 109 ILE n 1 110 GLU n 1 111 THR n 1 112 GLY n 1 113 LYS n 1 114 ILE n 1 115 ASP n 1 116 ALA n 1 117 GLY n 1 118 ALA n 1 119 HIS n 1 120 GLY n 1 121 ASN n 1 122 LEU n 1 123 GLY n 1 124 ILE n 1 125 ASN n 1 126 ILE n 1 127 LYS n 1 128 ASN n 1 129 ASP n 1 130 HIS n 1 131 GLU n 1 132 ASP n 1 133 ASP n 1 134 LYS n 1 135 MET n 1 136 GLN n 1 137 THR n 1 138 ILE n 1 139 PHE n 1 140 LEU n 1 141 ARG n 1 142 ASN n 1 143 ILE n 1 144 ASP n 1 145 ASN n 1 146 GLU n 1 147 LYS n 1 148 ILE n 1 149 PHE n 1 150 GLU n 1 151 LYS n 1 152 GLU n 1 153 ARG n 1 154 HIS n 1 155 LEU n 1 156 TYR n 1 157 LYS n 1 158 LEU n 1 159 GLY n 1 160 SER n 1 161 TYR n 1 162 ARG n 1 163 ILE n 1 164 GLU n 1 165 LYS n 1 166 GLY n 1 167 GLU n 1 168 ARG n 1 169 ILE n 1 170 ALA n 1 171 GLN n 1 172 LEU n 1 173 VAL n 1 174 ILE n 1 175 VAL n 1 176 PRO n 1 177 ILE n 1 178 TRP n 1 179 THR n 1 180 PRO n 1 181 GLU n 1 182 LEU n 1 183 LYS n 1 184 GLN n 1 185 VAL n 1 186 GLU n 1 187 GLU n 1 188 PHE n 1 189 GLU n 1 190 SER n 1 191 VAL n 1 192 SER n 1 193 GLU n 1 194 ARG n 1 195 GLY n 1 196 GLU n 1 197 LYS n 1 198 GLY n 1 199 PHE n 1 200 GLY n 1 201 SER n 1 202 SER n 1 203 GLY n 1 204 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'STAPHYLOCOCCUS PHAGE 80ALPHA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 53369 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET28A _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4ZF98_9CAUD _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession A4ZF98 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZF4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 35 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 204 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A4ZF98 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 170 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 170 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZF4 MET A 1 ? UNP A4ZF98 ? ? 'expression tag' -33 1 1 3ZF4 GLY A 2 ? UNP A4ZF98 ? ? 'expression tag' -32 2 1 3ZF4 SER A 3 ? UNP A4ZF98 ? ? 'expression tag' -31 3 1 3ZF4 SER A 4 ? UNP A4ZF98 ? ? 'expression tag' -30 4 1 3ZF4 HIS A 5 ? UNP A4ZF98 ? ? 'expression tag' -29 5 1 3ZF4 HIS A 6 ? UNP A4ZF98 ? ? 'expression tag' -28 6 1 3ZF4 HIS A 7 ? UNP A4ZF98 ? ? 'expression tag' -27 7 1 3ZF4 HIS A 8 ? UNP A4ZF98 ? ? 'expression tag' -26 8 1 3ZF4 HIS A 9 ? UNP A4ZF98 ? ? 'expression tag' -25 9 1 3ZF4 HIS A 10 ? UNP A4ZF98 ? ? 'expression tag' -24 10 1 3ZF4 SER A 11 ? UNP A4ZF98 ? ? 'expression tag' -23 11 1 3ZF4 SER A 12 ? UNP A4ZF98 ? ? 'expression tag' -22 12 1 3ZF4 GLY A 13 ? UNP A4ZF98 ? ? 'expression tag' -21 13 1 3ZF4 LEU A 14 ? UNP A4ZF98 ? ? 'expression tag' -20 14 1 3ZF4 VAL A 15 ? UNP A4ZF98 ? ? 'expression tag' -19 15 1 3ZF4 PRO A 16 ? UNP A4ZF98 ? ? 'expression tag' -18 16 1 3ZF4 ARG A 17 ? UNP A4ZF98 ? ? 'expression tag' -17 17 1 3ZF4 GLY A 18 ? UNP A4ZF98 ? ? 'expression tag' -16 18 1 3ZF4 SER A 19 ? UNP A4ZF98 ? ? 'expression tag' -15 19 1 3ZF4 HIS A 20 ? UNP A4ZF98 ? ? 'expression tag' -14 20 1 3ZF4 MET A 21 ? UNP A4ZF98 ? ? 'expression tag' -13 21 1 3ZF4 ALA A 22 ? UNP A4ZF98 ? ? 'expression tag' -12 22 1 3ZF4 SER A 23 ? UNP A4ZF98 ? ? 'expression tag' -11 23 1 3ZF4 MET A 24 ? UNP A4ZF98 ? ? 'expression tag' -10 24 1 3ZF4 THR A 25 ? UNP A4ZF98 ? ? 'expression tag' -9 25 1 3ZF4 GLY A 26 ? UNP A4ZF98 ? ? 'expression tag' -8 26 1 3ZF4 GLY A 27 ? UNP A4ZF98 ? ? 'expression tag' -7 27 1 3ZF4 GLN A 28 ? UNP A4ZF98 ? ? 'expression tag' -6 28 1 3ZF4 GLN A 29 ? UNP A4ZF98 ? ? 'expression tag' -5 29 1 3ZF4 MET A 30 ? UNP A4ZF98 ? ? 'expression tag' -4 30 1 3ZF4 GLY A 31 ? UNP A4ZF98 ? ? 'expression tag' -3 31 1 3ZF4 ARG A 32 ? UNP A4ZF98 ? ? 'expression tag' -2 32 1 3ZF4 GLY A 33 ? UNP A4ZF98 ? ? 'expression tag' -1 33 1 3ZF4 SER A 34 ? UNP A4ZF98 ? ? 'expression tag' 0 34 1 3ZF4 ALA A 118 ? UNP A4ZF98 TYR 84 'engineered mutation' 84 35 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DUP non-polymer . ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; ? 'C9 H16 N3 O13 P3' 467.157 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZF4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.60 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZF4 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 61.90 _reflns.d_resolution_high 3.10 _reflns.number_obs 4224 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.27 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.40 _reflns_shell.pdbx_redundancy 5.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZF4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3692 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 61.85 _refine.ls_d_res_high 3.10 _refine.ls_percent_reflns_obs 99.55 _refine.ls_R_factor_obs 0.24698 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24025 _refine.ls_R_factor_R_free 0.29059 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 12.4 _refine.ls_number_reflns_R_free 521 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.920 _refine.correlation_coeff_Fo_to_Fc_free 0.890 _refine.B_iso_mean 105.915 _refine.aniso_B[1][1] -39.57 _refine.aniso_B[2][2] -42.35 _refine.aniso_B[3][3] 81.93 _refine.aniso_B[1][2] 16.24 _refine.aniso_B[1][3] -72.18 _refine.aniso_B[2][3] -56.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. INITIAL MET IS NOT TRACED. RESIDUES K143 AND V170 ARE NOT TRACED BECAUSE OF LACK OF ELECTRON DENSITY. RESIUDES E159, , R160, K163, G169 ARE TRACED AS A. RESIDUES S156-S158 ARE DISORDERED. ; _refine.pdbx_starting_model 'PDB ENTRY 3ZEZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.116 _refine.overall_SU_ML 0.424 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 24.204 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1275 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 1318 _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 61.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.004 0.019 ? 1321 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.922 1.988 ? 1784 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.071 5.000 ? 161 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.517 25.000 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.186 15.000 ? 239 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.605 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.055 0.200 ? 202 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.021 ? 959 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.694 10.596 ? 653 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.048 15.875 ? 811 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.381 10.771 ? 668 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.102 _refine_ls_shell.d_res_low 3.182 _refine_ls_shell.number_reflns_R_work 261 _refine_ls_shell.R_factor_R_work 0.352 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.472 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 3ZF4 _struct.title ;Phage dUTPases control transfer of virulence genes by a proto- oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase Y81A mutant with dUpNHpp). ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZF4 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, PATHOGENICITY ISLAND, SAPI INDUCTION, GENE TRANSFER, MOONLIGHTING PROTEINS, G-PROTEIN, P-LOOP' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ARG _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 98 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 105 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ARG _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 64 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 71 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 129 OD1 ? ? ? 1_555 D NI . NI ? ? A ASP 95 A NI 1170 1_555 ? ? ? ? ? ? ? 2.639 ? ? metalc2 metalc ? ? A ASP 129 OD1 ? ? ? 5_555 D NI . NI ? ? A ASP 95 A NI 1170 1_555 ? ? ? ? ? ? ? 2.639 ? ? metalc3 metalc ? ? A ASP 129 OD1 ? ? ? 9_555 D NI . NI ? ? A ASP 95 A NI 1170 1_555 ? ? ? ? ? ? ? 2.639 ? ? metalc4 metalc ? ? B DUP . O2B ? ? ? 1_555 C MG . MG ? ? A DUP 777 A MG 888 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc5 metalc ? ? B DUP . O2A ? ? ? 1_555 C MG . MG ? ? A DUP 777 A MG 888 1_555 ? ? ? ? ? ? ? 2.031 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 5 ? AC ? 2 ? AD ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLN A 40 ? LEU A 43 ? GLN A 6 LEU A 9 AA 2 LYS A 76 ? SER A 86 ? LYS A 42 SER A 52 AA 3 ASN A 121 ? ASN A 128 ? ASN A 87 ASN A 94 AA 4 LEU A 107 ? ILE A 109 ? LEU A 73 ILE A 75 AB 1 GLU A 52 ? ARG A 53 ? GLU A 18 ARG A 19 AB 2 TYR A 61 ? PHE A 64 ? TYR A 27 PHE A 30 AB 3 ARG A 168 ? PRO A 176 ? ARG A 134 PRO A 142 AB 4 TYR A 91 ? SER A 97 ? TYR A 57 SER A 63 AB 5 GLY A 112 ? ILE A 114 ? GLY A 78 ILE A 80 AC 1 VAL A 69 ? LEU A 71 ? VAL A 35 LEU A 37 AC 2 TYR A 161 ? ILE A 163 ? TYR A 127 ILE A 129 AD 1 GLN A 136 ? THR A 137 ? GLN A 102 THR A 103 AD 2 TYR A 156 ? LYS A 157 ? TYR A 122 LYS A 123 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 42 ? N LYS A 8 O ALA A 84 ? O ALA A 50 AA 2 3 N THR A 81 ? N THR A 47 O LEU A 122 ? O LEU A 88 AA 3 4 N LYS A 127 ? N LYS A 93 O VAL A 108 ? O VAL A 74 AB 1 2 N GLU A 52 ? N GLU A 18 O ASP A 62 ? O ASP A 28 AB 2 3 O ILE A 63 ? O ILE A 29 N ILE A 169 ? N ILE A 135 AB 3 4 N VAL A 175 ? N VAL A 141 O VAL A 92 ? O VAL A 58 AB 4 5 N LEU A 95 ? N LEU A 61 O GLY A 112 ? O GLY A 78 AC 1 2 N LEU A 71 ? N LEU A 37 O TYR A 161 ? O TYR A 127 AD 1 2 N THR A 137 ? N THR A 103 O TYR A 156 ? O TYR A 122 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DUP 777 ? 17 'BINDING SITE FOR RESIDUE DUP A 777' AC2 Software A MG 888 ? 3 'BINDING SITE FOR RESIDUE MG A 888' AC3 Software A NI 1170 ? 3 'BINDING SITE FOR RESIDUE NI A 1170' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 ARG A 98 ? ARG A 64 . ? 5_555 ? 2 AC1 17 SER A 99 ? SER A 65 . ? 5_555 ? 3 AC1 17 GLY A 100 ? GLY A 66 . ? 5_555 ? 4 AC1 17 GLY A 112 ? GLY A 78 . ? 1_555 ? 5 AC1 17 LYS A 113 ? LYS A 79 . ? 1_555 ? 6 AC1 17 ILE A 114 ? ILE A 80 . ? 1_555 ? 7 AC1 17 ASP A 115 ? ASP A 81 . ? 1_555 ? 8 AC1 17 ALA A 118 ? ALA A 84 . ? 1_555 ? 9 AC1 17 LEU A 122 ? LEU A 88 . ? 1_555 ? 10 AC1 17 GLY A 123 ? GLY A 89 . ? 1_555 ? 11 AC1 17 GLN A 171 ? GLN A 137 . ? 5_555 ? 12 AC1 17 PHE A 199 ? PHE A 165 . ? 9_555 ? 13 AC1 17 GLY A 200 ? GLY A 166 . ? 9_555 ? 14 AC1 17 SER A 201 ? SER A 167 . ? 9_555 ? 15 AC1 17 SER A 202 ? SER A 168 . ? 9_555 ? 16 AC1 17 MG C . ? MG A 888 . ? 1_555 ? 17 AC1 17 HOH F . ? HOH A 2009 . ? 5_555 ? 18 AC2 3 ASP A 62 ? ASP A 28 . ? 5_555 ? 19 AC2 3 GLN A 171 ? GLN A 137 . ? 5_555 ? 20 AC2 3 DUP B . ? DUP A 777 . ? 1_555 ? 21 AC3 3 ASP A 129 ? ASP A 95 . ? 1_555 ? 22 AC3 3 ASP A 129 ? ASP A 95 . ? 9_555 ? 23 AC3 3 ASP A 129 ? ASP A 95 . ? 5_555 ? # _database_PDB_matrix.entry_id 3ZF4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZF4 _atom_sites.fract_transf_matrix[1][1] 0.011432 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011432 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011432 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NI O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -33 ? ? ? A . n A 1 2 GLY 2 -32 ? ? ? A . n A 1 3 SER 3 -31 ? ? ? A . n A 1 4 SER 4 -30 ? ? ? A . n A 1 5 HIS 5 -29 ? ? ? A . n A 1 6 HIS 6 -28 ? ? ? A . n A 1 7 HIS 7 -27 ? ? ? A . n A 1 8 HIS 8 -26 ? ? ? A . n A 1 9 HIS 9 -25 ? ? ? A . n A 1 10 HIS 10 -24 ? ? ? A . n A 1 11 SER 11 -23 ? ? ? A . n A 1 12 SER 12 -22 ? ? ? A . n A 1 13 GLY 13 -21 ? ? ? A . n A 1 14 LEU 14 -20 ? ? ? A . n A 1 15 VAL 15 -19 ? ? ? A . n A 1 16 PRO 16 -18 ? ? ? A . n A 1 17 ARG 17 -17 ? ? ? A . n A 1 18 GLY 18 -16 ? ? ? A . n A 1 19 SER 19 -15 ? ? ? A . n A 1 20 HIS 20 -14 ? ? ? A . n A 1 21 MET 21 -13 ? ? ? A . n A 1 22 ALA 22 -12 ? ? ? A . n A 1 23 SER 23 -11 ? ? ? A . n A 1 24 MET 24 -10 ? ? ? A . n A 1 25 THR 25 -9 ? ? ? A . n A 1 26 GLY 26 -8 ? ? ? A . n A 1 27 GLY 27 -7 ? ? ? A . n A 1 28 GLN 28 -6 ? ? ? A . n A 1 29 GLN 29 -5 ? ? ? A . n A 1 30 MET 30 -4 ? ? ? A . n A 1 31 GLY 31 -3 ? ? ? A . n A 1 32 ARG 32 -2 ? ? ? A . n A 1 33 GLY 33 -1 ? ? ? A . n A 1 34 SER 34 0 ? ? ? A . n A 1 35 MET 35 1 ? ? ? A . n A 1 36 THR 36 2 2 THR THR A . n A 1 37 ASN 37 3 3 ASN ASN A . n A 1 38 THR 38 4 4 THR THR A . n A 1 39 LEU 39 5 5 LEU LEU A . n A 1 40 GLN 40 6 6 GLN GLN A . n A 1 41 VAL 41 7 7 VAL VAL A . n A 1 42 LYS 42 8 8 LYS LYS A . n A 1 43 LEU 43 9 9 LEU LEU A . n A 1 44 LEU 44 10 10 LEU LEU A . n A 1 45 SER 45 11 11 SER SER A . n A 1 46 LYS 46 12 12 LYS LYS A . n A 1 47 ASN 47 13 13 ASN ASN A . n A 1 48 ALA 48 14 14 ALA ALA A . n A 1 49 ARG 49 15 15 ARG ARG A . n A 1 50 MET 50 16 16 MET MET A . n A 1 51 PRO 51 17 17 PRO PRO A . n A 1 52 GLU 52 18 18 GLU GLU A . n A 1 53 ARG 53 19 19 ARG ARG A . n A 1 54 ASN 54 20 20 ASN ASN A . n A 1 55 HIS 55 21 21 HIS HIS A . n A 1 56 LYS 56 22 22 LYS LYS A . n A 1 57 THR 57 23 23 THR THR A . n A 1 58 ASP 58 24 24 ASP ASP A . n A 1 59 ALA 59 25 25 ALA ALA A . n A 1 60 GLY 60 26 26 GLY GLY A . n A 1 61 TYR 61 27 27 TYR TYR A . n A 1 62 ASP 62 28 28 ASP ASP A . n A 1 63 ILE 63 29 29 ILE ILE A . n A 1 64 PHE 64 30 30 PHE PHE A . n A 1 65 SER 65 31 31 SER SER A . n A 1 66 ALA 66 32 32 ALA ALA A . n A 1 67 GLU 67 33 33 GLU GLU A . n A 1 68 THR 68 34 34 THR THR A . n A 1 69 VAL 69 35 35 VAL VAL A . n A 1 70 VAL 70 36 36 VAL VAL A . n A 1 71 LEU 71 37 37 LEU LEU A . n A 1 72 GLU 72 38 38 GLU GLU A . n A 1 73 PRO 73 39 39 PRO PRO A . n A 1 74 GLN 74 40 40 GLN GLN A . n A 1 75 GLU 75 41 41 GLU GLU A . n A 1 76 LYS 76 42 42 LYS LYS A . n A 1 77 ALA 77 43 43 ALA ALA A . n A 1 78 VAL 78 44 44 VAL VAL A . n A 1 79 ILE 79 45 45 ILE ILE A . n A 1 80 LYS 80 46 46 LYS LYS A . n A 1 81 THR 81 47 47 THR THR A . n A 1 82 ASP 82 48 48 ASP ASP A . n A 1 83 VAL 83 49 49 VAL VAL A . n A 1 84 ALA 84 50 50 ALA ALA A . n A 1 85 VAL 85 51 51 VAL VAL A . n A 1 86 SER 86 52 52 SER SER A . n A 1 87 ILE 87 53 53 ILE ILE A . n A 1 88 PRO 88 54 54 PRO PRO A . n A 1 89 GLU 89 55 55 GLU GLU A . n A 1 90 GLY 90 56 56 GLY GLY A . n A 1 91 TYR 91 57 57 TYR TYR A . n A 1 92 VAL 92 58 58 VAL VAL A . n A 1 93 GLY 93 59 59 GLY GLY A . n A 1 94 LEU 94 60 60 LEU LEU A . n A 1 95 LEU 95 61 61 LEU LEU A . n A 1 96 THR 96 62 62 THR THR A . n A 1 97 SER 97 63 63 SER SER A . n A 1 98 ARG 98 64 64 ARG ARG A . n A 1 99 SER 99 65 65 SER SER A . n A 1 100 GLY 100 66 66 GLY GLY A . n A 1 101 VAL 101 67 67 VAL VAL A . n A 1 102 SER 102 68 68 SER SER A . n A 1 103 SER 103 69 69 SER SER A . n A 1 104 LYS 104 70 70 LYS LYS A . n A 1 105 THR 105 71 71 THR THR A . n A 1 106 HIS 106 72 72 HIS HIS A . n A 1 107 LEU 107 73 73 LEU LEU A . n A 1 108 VAL 108 74 74 VAL VAL A . n A 1 109 ILE 109 75 75 ILE ILE A . n A 1 110 GLU 110 76 76 GLU GLU A . n A 1 111 THR 111 77 77 THR THR A . n A 1 112 GLY 112 78 78 GLY GLY A . n A 1 113 LYS 113 79 79 LYS LYS A . n A 1 114 ILE 114 80 80 ILE ILE A . n A 1 115 ASP 115 81 81 ASP ASP A . n A 1 116 ALA 116 82 82 ALA ALA A . n A 1 117 GLY 117 83 83 GLY GLY A . n A 1 118 ALA 118 84 84 ALA ALA A . n A 1 119 HIS 119 85 85 HIS HIS A . n A 1 120 GLY 120 86 86 GLY GLY A . n A 1 121 ASN 121 87 87 ASN ASN A . n A 1 122 LEU 122 88 88 LEU LEU A . n A 1 123 GLY 123 89 89 GLY GLY A . n A 1 124 ILE 124 90 90 ILE ILE A . n A 1 125 ASN 125 91 91 ASN ASN A . n A 1 126 ILE 126 92 92 ILE ILE A . n A 1 127 LYS 127 93 93 LYS LYS A . n A 1 128 ASN 128 94 94 ASN ASN A . n A 1 129 ASP 129 95 95 ASP ASP A . n A 1 130 HIS 130 96 96 HIS HIS A . n A 1 131 GLU 131 97 97 GLU GLU A . n A 1 132 ASP 132 98 98 ASP ASP A . n A 1 133 ASP 133 99 99 ASP ASP A . n A 1 134 LYS 134 100 100 LYS LYS A . n A 1 135 MET 135 101 101 MET MET A . n A 1 136 GLN 136 102 102 GLN GLN A . n A 1 137 THR 137 103 103 THR THR A . n A 1 138 ILE 138 104 104 ILE ILE A . n A 1 139 PHE 139 105 105 PHE PHE A . n A 1 140 LEU 140 106 106 LEU LEU A . n A 1 141 ARG 141 107 107 ARG ARG A . n A 1 142 ASN 142 108 108 ASN ASN A . n A 1 143 ILE 143 109 109 ILE ILE A . n A 1 144 ASP 144 110 110 ASP ASP A . n A 1 145 ASN 145 111 111 ASN ASN A . n A 1 146 GLU 146 112 112 GLU GLU A . n A 1 147 LYS 147 113 113 LYS LYS A . n A 1 148 ILE 148 114 114 ILE ILE A . n A 1 149 PHE 149 115 115 PHE PHE A . n A 1 150 GLU 150 116 116 GLU GLU A . n A 1 151 LYS 151 117 117 LYS LYS A . n A 1 152 GLU 152 118 118 GLU GLU A . n A 1 153 ARG 153 119 119 ARG ARG A . n A 1 154 HIS 154 120 120 HIS HIS A . n A 1 155 LEU 155 121 121 LEU LEU A . n A 1 156 TYR 156 122 122 TYR TYR A . n A 1 157 LYS 157 123 123 LYS LYS A . n A 1 158 LEU 158 124 124 LEU LEU A . n A 1 159 GLY 159 125 125 GLY GLY A . n A 1 160 SER 160 126 126 SER SER A . n A 1 161 TYR 161 127 127 TYR TYR A . n A 1 162 ARG 162 128 128 ARG ARG A . n A 1 163 ILE 163 129 129 ILE ILE A . n A 1 164 GLU 164 130 130 GLU GLU A . n A 1 165 LYS 165 131 131 LYS LYS A . n A 1 166 GLY 166 132 132 GLY GLY A . n A 1 167 GLU 167 133 133 GLU GLU A . n A 1 168 ARG 168 134 134 ARG ARG A . n A 1 169 ILE 169 135 135 ILE ILE A . n A 1 170 ALA 170 136 136 ALA ALA A . n A 1 171 GLN 171 137 137 GLN GLN A . n A 1 172 LEU 172 138 138 LEU LEU A . n A 1 173 VAL 173 139 139 VAL VAL A . n A 1 174 ILE 174 140 140 ILE ILE A . n A 1 175 VAL 175 141 141 VAL VAL A . n A 1 176 PRO 176 142 142 PRO PRO A . n A 1 177 ILE 177 143 143 ILE ILE A . n A 1 178 TRP 178 144 144 TRP TRP A . n A 1 179 THR 179 145 145 THR THR A . n A 1 180 PRO 180 146 146 PRO PRO A . n A 1 181 GLU 181 147 147 GLU GLU A . n A 1 182 LEU 182 148 148 LEU LEU A . n A 1 183 LYS 183 149 149 LYS LYS A . n A 1 184 GLN 184 150 150 GLN GLN A . n A 1 185 VAL 185 151 151 VAL VAL A . n A 1 186 GLU 186 152 152 GLU GLU A . n A 1 187 GLU 187 153 153 GLU GLU A . n A 1 188 PHE 188 154 154 PHE PHE A . n A 1 189 GLU 189 155 155 GLU GLU A . n A 1 190 SER 190 156 ? ? ? A . n A 1 191 VAL 191 157 ? ? ? A . n A 1 192 SER 192 158 ? ? ? A . n A 1 193 GLU 193 159 159 GLU GLU A . n A 1 194 ARG 194 160 160 ARG ARG A . n A 1 195 GLY 195 161 161 GLY GLY A . n A 1 196 GLU 196 162 162 GLU GLU A . n A 1 197 LYS 197 163 163 LYS LYS A . n A 1 198 GLY 198 164 ? ? ? A . n A 1 199 PHE 199 165 165 PHE PHE A . n A 1 200 GLY 200 166 166 GLY GLY A . n A 1 201 SER 201 167 167 SER SER A . n A 1 202 SER 202 168 168 SER SER A . n A 1 203 GLY 203 169 169 GLY GLY A . n A 1 204 VAL 204 170 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DUP 1 777 777 DUP DUP A . C 3 MG 1 888 888 MG MG A . D 4 NI 1 1170 1170 NI NI A . E 4 NI 1 1171 1171 NI NI A . F 5 HOH 1 2001 2001 HOH HOH A . F 5 HOH 2 2002 2002 HOH HOH A . F 5 HOH 3 2003 2003 HOH HOH A . F 5 HOH 4 2004 2004 HOH HOH A . F 5 HOH 5 2005 2005 HOH HOH A . F 5 HOH 6 2006 2006 HOH HOH A . F 5 HOH 7 2007 2007 HOH HOH A . F 5 HOH 8 2008 2008 HOH HOH A . F 5 HOH 9 2009 2009 HOH HOH A . F 5 HOH 10 2010 2010 HOH HOH A . F 5 HOH 11 2011 2011 HOH HOH A . F 5 HOH 12 2012 2012 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16100 ? 1 MORE -116.0 ? 1 'SSA (A^2)' 21690 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NI 1170 ? D NI . 2 1 A NI 1171 ? E NI . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 129 ? A ASP 95 ? 1_555 NI ? D NI . ? A NI 1170 ? 1_555 OD1 ? A ASP 129 ? A ASP 95 ? 5_555 100.2 ? 2 OD1 ? A ASP 129 ? A ASP 95 ? 1_555 NI ? D NI . ? A NI 1170 ? 1_555 OD1 ? A ASP 129 ? A ASP 95 ? 9_555 100.2 ? 3 OD1 ? A ASP 129 ? A ASP 95 ? 5_555 NI ? D NI . ? A NI 1170 ? 1_555 OD1 ? A ASP 129 ? A ASP 95 ? 9_555 100.2 ? 4 O2B ? B DUP . ? A DUP 777 ? 1_555 MG ? C MG . ? A MG 888 ? 1_555 O2A ? B DUP . ? A DUP 777 ? 1_555 84.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-30 2 'Structure model' 1 1 2013-03-20 3 'Structure model' 1 2 2013-04-03 4 'Structure model' 1 3 2013-04-17 5 'Structure model' 1 4 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Database references' 6 4 'Structure model' Other 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' Other 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_database_status 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_status.status_code_sf' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 5 'Structure model' '_pdbx_struct_conn_angle.value' 24 5 'Structure model' '_struct_conn.pdbx_dist_value' 25 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 5 'Structure model' '_struct_conn.ptnr1_symmetry' 32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_symmetry' 39 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.7.0032 ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 3 ? ? -107.83 60.30 2 1 LYS A 100 ? ? 65.77 -11.40 3 1 PHE A 115 ? ? -102.14 69.52 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 22 ? CE ? A LYS 56 CE 2 1 Y 1 A LYS 22 ? NZ ? A LYS 56 NZ 3 1 Y 1 A THR 23 ? CB ? A THR 57 CB 4 1 Y 1 A THR 23 ? OG1 ? A THR 57 OG1 5 1 Y 1 A THR 23 ? CG2 ? A THR 57 CG2 6 1 Y 1 A GLU 55 ? CD ? A GLU 89 CD 7 1 Y 1 A GLU 55 ? OE1 ? A GLU 89 OE1 8 1 Y 1 A GLU 55 ? OE2 ? A GLU 89 OE2 9 1 Y 1 A GLU 147 ? CD ? A GLU 181 CD 10 1 Y 1 A GLU 159 ? CG ? A GLU 193 CG 11 1 Y 1 A GLU 159 ? CD ? A GLU 193 CD 12 1 Y 1 A GLU 159 ? OE1 ? A GLU 193 OE1 13 1 Y 1 A GLU 159 ? OE2 ? A GLU 193 OE2 14 1 Y 1 A ARG 160 ? CG ? A ARG 194 CG 15 1 Y 1 A ARG 160 ? CD ? A ARG 194 CD 16 1 Y 1 A ARG 160 ? NE ? A ARG 194 NE 17 1 Y 1 A ARG 160 ? CZ ? A ARG 194 CZ 18 1 Y 1 A ARG 160 ? NH1 ? A ARG 194 NH1 19 1 Y 1 A ARG 160 ? NH2 ? A ARG 194 NH2 20 1 Y 1 A LYS 163 ? CG ? A LYS 197 CG 21 1 Y 1 A LYS 163 ? CD ? A LYS 197 CD 22 1 Y 1 A LYS 163 ? CE ? A LYS 197 CE 23 1 Y 1 A LYS 163 ? NZ ? A LYS 197 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -33 ? A MET 1 2 1 Y 1 A GLY -32 ? A GLY 2 3 1 Y 1 A SER -31 ? A SER 3 4 1 Y 1 A SER -30 ? A SER 4 5 1 Y 1 A HIS -29 ? A HIS 5 6 1 Y 1 A HIS -28 ? A HIS 6 7 1 Y 1 A HIS -27 ? A HIS 7 8 1 Y 1 A HIS -26 ? A HIS 8 9 1 Y 1 A HIS -25 ? A HIS 9 10 1 Y 1 A HIS -24 ? A HIS 10 11 1 Y 1 A SER -23 ? A SER 11 12 1 Y 1 A SER -22 ? A SER 12 13 1 Y 1 A GLY -21 ? A GLY 13 14 1 Y 1 A LEU -20 ? A LEU 14 15 1 Y 1 A VAL -19 ? A VAL 15 16 1 Y 1 A PRO -18 ? A PRO 16 17 1 Y 1 A ARG -17 ? A ARG 17 18 1 Y 1 A GLY -16 ? A GLY 18 19 1 Y 1 A SER -15 ? A SER 19 20 1 Y 1 A HIS -14 ? A HIS 20 21 1 Y 1 A MET -13 ? A MET 21 22 1 Y 1 A ALA -12 ? A ALA 22 23 1 Y 1 A SER -11 ? A SER 23 24 1 Y 1 A MET -10 ? A MET 24 25 1 Y 1 A THR -9 ? A THR 25 26 1 Y 1 A GLY -8 ? A GLY 26 27 1 Y 1 A GLY -7 ? A GLY 27 28 1 Y 1 A GLN -6 ? A GLN 28 29 1 Y 1 A GLN -5 ? A GLN 29 30 1 Y 1 A MET -4 ? A MET 30 31 1 Y 1 A GLY -3 ? A GLY 31 32 1 Y 1 A ARG -2 ? A ARG 32 33 1 Y 1 A GLY -1 ? A GLY 33 34 1 Y 1 A SER 0 ? A SER 34 35 1 Y 1 A MET 1 ? A MET 35 36 1 Y 1 A SER 156 ? A SER 190 37 1 Y 1 A VAL 157 ? A VAL 191 38 1 Y 1 A SER 158 ? A SER 192 39 1 Y 1 A GLY 164 ? A GLY 198 40 1 Y 1 A VAL 170 ? A VAL 204 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DUP O4 O N N 74 DUP C4 C Y N 75 DUP C5 C Y N 76 DUP C6 C Y N 77 DUP N3 N Y N 78 DUP C2 C Y N 79 DUP O2 O N N 80 DUP N1 N Y N 81 DUP "C1'" C N R 82 DUP "C2'" C N N 83 DUP "C3'" C N S 84 DUP "O3'" O N N 85 DUP "O4'" O N N 86 DUP "C4'" C N R 87 DUP "C5'" C N N 88 DUP "O5'" O N N 89 DUP PA P N S 90 DUP O1A O N N 91 DUP O2A O N N 92 DUP N3A N N N 93 DUP PB P N R 94 DUP O1B O N N 95 DUP O2B O N N 96 DUP O3B O N N 97 DUP PG P N N 98 DUP O2G O N N 99 DUP O1G O N N 100 DUP O3G O N N 101 DUP H5 H N N 102 DUP H6 H N N 103 DUP HN3 H N N 104 DUP "H1'" H N N 105 DUP "H2'1" H N N 106 DUP "H2'2" H N N 107 DUP H1 H N N 108 DUP "H3'" H N N 109 DUP "H4'" H N N 110 DUP "H5'1" H N N 111 DUP "H5'2" H N N 112 DUP H2A H N N 113 DUP H3A H N N 114 DUP H2B H N N 115 DUP H1G H N N 116 DUP H3G H N N 117 GLN N N N N 118 GLN CA C N S 119 GLN C C N N 120 GLN O O N N 121 GLN CB C N N 122 GLN CG C N N 123 GLN CD C N N 124 GLN OE1 O N N 125 GLN NE2 N N N 126 GLN OXT O N N 127 GLN H H N N 128 GLN H2 H N N 129 GLN HA H N N 130 GLN HB2 H N N 131 GLN HB3 H N N 132 GLN HG2 H N N 133 GLN HG3 H N N 134 GLN HE21 H N N 135 GLN HE22 H N N 136 GLN HXT H N N 137 GLU N N N N 138 GLU CA C N S 139 GLU C C N N 140 GLU O O N N 141 GLU CB C N N 142 GLU CG C N N 143 GLU CD C N N 144 GLU OE1 O N N 145 GLU OE2 O N N 146 GLU OXT O N N 147 GLU H H N N 148 GLU H2 H N N 149 GLU HA H N N 150 GLU HB2 H N N 151 GLU HB3 H N N 152 GLU HG2 H N N 153 GLU HG3 H N N 154 GLU HE2 H N N 155 GLU HXT H N N 156 GLY N N N N 157 GLY CA C N N 158 GLY C C N N 159 GLY O O N N 160 GLY OXT O N N 161 GLY H H N N 162 GLY H2 H N N 163 GLY HA2 H N N 164 GLY HA3 H N N 165 GLY HXT H N N 166 HIS N N N N 167 HIS CA C N S 168 HIS C C N N 169 HIS O O N N 170 HIS CB C N N 171 HIS CG C Y N 172 HIS ND1 N Y N 173 HIS CD2 C Y N 174 HIS CE1 C Y N 175 HIS NE2 N Y N 176 HIS OXT O N N 177 HIS H H N N 178 HIS H2 H N N 179 HIS HA H N N 180 HIS HB2 H N N 181 HIS HB3 H N N 182 HIS HD1 H N N 183 HIS HD2 H N N 184 HIS HE1 H N N 185 HIS HE2 H N N 186 HIS HXT H N N 187 HOH O O N N 188 HOH H1 H N N 189 HOH H2 H N N 190 ILE N N N N 191 ILE CA C N S 192 ILE C C N N 193 ILE O O N N 194 ILE CB C N S 195 ILE CG1 C N N 196 ILE CG2 C N N 197 ILE CD1 C N N 198 ILE OXT O N N 199 ILE H H N N 200 ILE H2 H N N 201 ILE HA H N N 202 ILE HB H N N 203 ILE HG12 H N N 204 ILE HG13 H N N 205 ILE HG21 H N N 206 ILE HG22 H N N 207 ILE HG23 H N N 208 ILE HD11 H N N 209 ILE HD12 H N N 210 ILE HD13 H N N 211 ILE HXT H N N 212 LEU N N N N 213 LEU CA C N S 214 LEU C C N N 215 LEU O O N N 216 LEU CB C N N 217 LEU CG C N N 218 LEU CD1 C N N 219 LEU CD2 C N N 220 LEU OXT O N N 221 LEU H H N N 222 LEU H2 H N N 223 LEU HA H N N 224 LEU HB2 H N N 225 LEU HB3 H N N 226 LEU HG H N N 227 LEU HD11 H N N 228 LEU HD12 H N N 229 LEU HD13 H N N 230 LEU HD21 H N N 231 LEU HD22 H N N 232 LEU HD23 H N N 233 LEU HXT H N N 234 LYS N N N N 235 LYS CA C N S 236 LYS C C N N 237 LYS O O N N 238 LYS CB C N N 239 LYS CG C N N 240 LYS CD C N N 241 LYS CE C N N 242 LYS NZ N N N 243 LYS OXT O N N 244 LYS H H N N 245 LYS H2 H N N 246 LYS HA H N N 247 LYS HB2 H N N 248 LYS HB3 H N N 249 LYS HG2 H N N 250 LYS HG3 H N N 251 LYS HD2 H N N 252 LYS HD3 H N N 253 LYS HE2 H N N 254 LYS HE3 H N N 255 LYS HZ1 H N N 256 LYS HZ2 H N N 257 LYS HZ3 H N N 258 LYS HXT H N N 259 MET N N N N 260 MET CA C N S 261 MET C C N N 262 MET O O N N 263 MET CB C N N 264 MET CG C N N 265 MET SD S N N 266 MET CE C N N 267 MET OXT O N N 268 MET H H N N 269 MET H2 H N N 270 MET HA H N N 271 MET HB2 H N N 272 MET HB3 H N N 273 MET HG2 H N N 274 MET HG3 H N N 275 MET HE1 H N N 276 MET HE2 H N N 277 MET HE3 H N N 278 MET HXT H N N 279 MG MG MG N N 280 NI NI NI N N 281 PHE N N N N 282 PHE CA C N S 283 PHE C C N N 284 PHE O O N N 285 PHE CB C N N 286 PHE CG C Y N 287 PHE CD1 C Y N 288 PHE CD2 C Y N 289 PHE CE1 C Y N 290 PHE CE2 C Y N 291 PHE CZ C Y N 292 PHE OXT O N N 293 PHE H H N N 294 PHE H2 H N N 295 PHE HA H N N 296 PHE HB2 H N N 297 PHE HB3 H N N 298 PHE HD1 H N N 299 PHE HD2 H N N 300 PHE HE1 H N N 301 PHE HE2 H N N 302 PHE HZ H N N 303 PHE HXT H N N 304 PRO N N N N 305 PRO CA C N S 306 PRO C C N N 307 PRO O O N N 308 PRO CB C N N 309 PRO CG C N N 310 PRO CD C N N 311 PRO OXT O N N 312 PRO H H N N 313 PRO HA H N N 314 PRO HB2 H N N 315 PRO HB3 H N N 316 PRO HG2 H N N 317 PRO HG3 H N N 318 PRO HD2 H N N 319 PRO HD3 H N N 320 PRO HXT H N N 321 SER N N N N 322 SER CA C N S 323 SER C C N N 324 SER O O N N 325 SER CB C N N 326 SER OG O N N 327 SER OXT O N N 328 SER H H N N 329 SER H2 H N N 330 SER HA H N N 331 SER HB2 H N N 332 SER HB3 H N N 333 SER HG H N N 334 SER HXT H N N 335 THR N N N N 336 THR CA C N S 337 THR C C N N 338 THR O O N N 339 THR CB C N R 340 THR OG1 O N N 341 THR CG2 C N N 342 THR OXT O N N 343 THR H H N N 344 THR H2 H N N 345 THR HA H N N 346 THR HB H N N 347 THR HG1 H N N 348 THR HG21 H N N 349 THR HG22 H N N 350 THR HG23 H N N 351 THR HXT H N N 352 TRP N N N N 353 TRP CA C N S 354 TRP C C N N 355 TRP O O N N 356 TRP CB C N N 357 TRP CG C Y N 358 TRP CD1 C Y N 359 TRP CD2 C Y N 360 TRP NE1 N Y N 361 TRP CE2 C Y N 362 TRP CE3 C Y N 363 TRP CZ2 C Y N 364 TRP CZ3 C Y N 365 TRP CH2 C Y N 366 TRP OXT O N N 367 TRP H H N N 368 TRP H2 H N N 369 TRP HA H N N 370 TRP HB2 H N N 371 TRP HB3 H N N 372 TRP HD1 H N N 373 TRP HE1 H N N 374 TRP HE3 H N N 375 TRP HZ2 H N N 376 TRP HZ3 H N N 377 TRP HH2 H N N 378 TRP HXT H N N 379 TYR N N N N 380 TYR CA C N S 381 TYR C C N N 382 TYR O O N N 383 TYR CB C N N 384 TYR CG C Y N 385 TYR CD1 C Y N 386 TYR CD2 C Y N 387 TYR CE1 C Y N 388 TYR CE2 C Y N 389 TYR CZ C Y N 390 TYR OH O N N 391 TYR OXT O N N 392 TYR H H N N 393 TYR H2 H N N 394 TYR HA H N N 395 TYR HB2 H N N 396 TYR HB3 H N N 397 TYR HD1 H N N 398 TYR HD2 H N N 399 TYR HE1 H N N 400 TYR HE2 H N N 401 TYR HH H N N 402 TYR HXT H N N 403 VAL N N N N 404 VAL CA C N S 405 VAL C C N N 406 VAL O O N N 407 VAL CB C N N 408 VAL CG1 C N N 409 VAL CG2 C N N 410 VAL OXT O N N 411 VAL H H N N 412 VAL H2 H N N 413 VAL HA H N N 414 VAL HB H N N 415 VAL HG11 H N N 416 VAL HG12 H N N 417 VAL HG13 H N N 418 VAL HG21 H N N 419 VAL HG22 H N N 420 VAL HG23 H N N 421 VAL HXT H N N 422 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DUP O4 C4 doub N N 70 DUP C4 C5 sing Y N 71 DUP C4 N3 sing Y N 72 DUP C5 C6 doub Y N 73 DUP C5 H5 sing N N 74 DUP C6 N1 sing Y N 75 DUP C6 H6 sing N N 76 DUP N3 C2 sing Y N 77 DUP N3 HN3 sing N N 78 DUP C2 O2 doub N N 79 DUP C2 N1 sing Y N 80 DUP N1 "C1'" sing N N 81 DUP "C1'" "C2'" sing N N 82 DUP "C1'" "O4'" sing N N 83 DUP "C1'" "H1'" sing N N 84 DUP "C2'" "C3'" sing N N 85 DUP "C2'" "H2'1" sing N N 86 DUP "C2'" "H2'2" sing N N 87 DUP "C3'" "O3'" sing N N 88 DUP "C3'" "C4'" sing N N 89 DUP "C3'" H1 sing N N 90 DUP "O3'" "H3'" sing N N 91 DUP "O4'" "C4'" sing N N 92 DUP "C4'" "C5'" sing N N 93 DUP "C4'" "H4'" sing N N 94 DUP "C5'" "O5'" sing N N 95 DUP "C5'" "H5'1" sing N N 96 DUP "C5'" "H5'2" sing N N 97 DUP "O5'" PA sing N N 98 DUP PA O1A doub N N 99 DUP PA O2A sing N N 100 DUP PA N3A sing N N 101 DUP O2A H2A sing N N 102 DUP N3A PB sing N N 103 DUP N3A H3A sing N N 104 DUP PB O1B doub N N 105 DUP PB O2B sing N N 106 DUP PB O3B sing N N 107 DUP O2B H2B sing N N 108 DUP O3B PG sing N N 109 DUP PG O2G doub N N 110 DUP PG O1G sing N N 111 DUP PG O3G sing N N 112 DUP O1G H1G sing N N 113 DUP O3G H3G sing N N 114 GLN N CA sing N N 115 GLN N H sing N N 116 GLN N H2 sing N N 117 GLN CA C sing N N 118 GLN CA CB sing N N 119 GLN CA HA sing N N 120 GLN C O doub N N 121 GLN C OXT sing N N 122 GLN CB CG sing N N 123 GLN CB HB2 sing N N 124 GLN CB HB3 sing N N 125 GLN CG CD sing N N 126 GLN CG HG2 sing N N 127 GLN CG HG3 sing N N 128 GLN CD OE1 doub N N 129 GLN CD NE2 sing N N 130 GLN NE2 HE21 sing N N 131 GLN NE2 HE22 sing N N 132 GLN OXT HXT sing N N 133 GLU N CA sing N N 134 GLU N H sing N N 135 GLU N H2 sing N N 136 GLU CA C sing N N 137 GLU CA CB sing N N 138 GLU CA HA sing N N 139 GLU C O doub N N 140 GLU C OXT sing N N 141 GLU CB CG sing N N 142 GLU CB HB2 sing N N 143 GLU CB HB3 sing N N 144 GLU CG CD sing N N 145 GLU CG HG2 sing N N 146 GLU CG HG3 sing N N 147 GLU CD OE1 doub N N 148 GLU CD OE2 sing N N 149 GLU OE2 HE2 sing N N 150 GLU OXT HXT sing N N 151 GLY N CA sing N N 152 GLY N H sing N N 153 GLY N H2 sing N N 154 GLY CA C sing N N 155 GLY CA HA2 sing N N 156 GLY CA HA3 sing N N 157 GLY C O doub N N 158 GLY C OXT sing N N 159 GLY OXT HXT sing N N 160 HIS N CA sing N N 161 HIS N H sing N N 162 HIS N H2 sing N N 163 HIS CA C sing N N 164 HIS CA CB sing N N 165 HIS CA HA sing N N 166 HIS C O doub N N 167 HIS C OXT sing N N 168 HIS CB CG sing N N 169 HIS CB HB2 sing N N 170 HIS CB HB3 sing N N 171 HIS CG ND1 sing Y N 172 HIS CG CD2 doub Y N 173 HIS ND1 CE1 doub Y N 174 HIS ND1 HD1 sing N N 175 HIS CD2 NE2 sing Y N 176 HIS CD2 HD2 sing N N 177 HIS CE1 NE2 sing Y N 178 HIS CE1 HE1 sing N N 179 HIS NE2 HE2 sing N N 180 HIS OXT HXT sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 ILE N CA sing N N 184 ILE N H sing N N 185 ILE N H2 sing N N 186 ILE CA C sing N N 187 ILE CA CB sing N N 188 ILE CA HA sing N N 189 ILE C O doub N N 190 ILE C OXT sing N N 191 ILE CB CG1 sing N N 192 ILE CB CG2 sing N N 193 ILE CB HB sing N N 194 ILE CG1 CD1 sing N N 195 ILE CG1 HG12 sing N N 196 ILE CG1 HG13 sing N N 197 ILE CG2 HG21 sing N N 198 ILE CG2 HG22 sing N N 199 ILE CG2 HG23 sing N N 200 ILE CD1 HD11 sing N N 201 ILE CD1 HD12 sing N N 202 ILE CD1 HD13 sing N N 203 ILE OXT HXT sing N N 204 LEU N CA sing N N 205 LEU N H sing N N 206 LEU N H2 sing N N 207 LEU CA C sing N N 208 LEU CA CB sing N N 209 LEU CA HA sing N N 210 LEU C O doub N N 211 LEU C OXT sing N N 212 LEU CB CG sing N N 213 LEU CB HB2 sing N N 214 LEU CB HB3 sing N N 215 LEU CG CD1 sing N N 216 LEU CG CD2 sing N N 217 LEU CG HG sing N N 218 LEU CD1 HD11 sing N N 219 LEU CD1 HD12 sing N N 220 LEU CD1 HD13 sing N N 221 LEU CD2 HD21 sing N N 222 LEU CD2 HD22 sing N N 223 LEU CD2 HD23 sing N N 224 LEU OXT HXT sing N N 225 LYS N CA sing N N 226 LYS N H sing N N 227 LYS N H2 sing N N 228 LYS CA C sing N N 229 LYS CA CB sing N N 230 LYS CA HA sing N N 231 LYS C O doub N N 232 LYS C OXT sing N N 233 LYS CB CG sing N N 234 LYS CB HB2 sing N N 235 LYS CB HB3 sing N N 236 LYS CG CD sing N N 237 LYS CG HG2 sing N N 238 LYS CG HG3 sing N N 239 LYS CD CE sing N N 240 LYS CD HD2 sing N N 241 LYS CD HD3 sing N N 242 LYS CE NZ sing N N 243 LYS CE HE2 sing N N 244 LYS CE HE3 sing N N 245 LYS NZ HZ1 sing N N 246 LYS NZ HZ2 sing N N 247 LYS NZ HZ3 sing N N 248 LYS OXT HXT sing N N 249 MET N CA sing N N 250 MET N H sing N N 251 MET N H2 sing N N 252 MET CA C sing N N 253 MET CA CB sing N N 254 MET CA HA sing N N 255 MET C O doub N N 256 MET C OXT sing N N 257 MET CB CG sing N N 258 MET CB HB2 sing N N 259 MET CB HB3 sing N N 260 MET CG SD sing N N 261 MET CG HG2 sing N N 262 MET CG HG3 sing N N 263 MET SD CE sing N N 264 MET CE HE1 sing N N 265 MET CE HE2 sing N N 266 MET CE HE3 sing N N 267 MET OXT HXT sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PRO N CA sing N N 292 PRO N CD sing N N 293 PRO N H sing N N 294 PRO CA C sing N N 295 PRO CA CB sing N N 296 PRO CA HA sing N N 297 PRO C O doub N N 298 PRO C OXT sing N N 299 PRO CB CG sing N N 300 PRO CB HB2 sing N N 301 PRO CB HB3 sing N N 302 PRO CG CD sing N N 303 PRO CG HG2 sing N N 304 PRO CG HG3 sing N N 305 PRO CD HD2 sing N N 306 PRO CD HD3 sing N N 307 PRO OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; DUP 3 'MAGNESIUM ION' MG 4 'NICKEL (II) ION' NI 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ZEZ _pdbx_initial_refinement_model.details 'PDB ENTRY 3ZEZ' #