HEADER TRANSCRIPTION 17-DEC-12 3ZGD TITLE CRYSTAL STRUCTURE OF A KEAP1 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KELCH DOMAIN, RESIDUES 321-609; COMPND 5 SYNONYM: CYTOSOLIC INHIBITOR OF NRF2, INRF2, KELCH-LIKE PROTEIN 19; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS TRANSCRIPTION, CRYSTAL CONTACT ENGINEERING EXPDTA X-RAY DIFFRACTION AUTHOR S.HOERER,D.REINERT,K.OSTMANN,Y.HOEVELS,H.NAR REVDAT 2 20-DEC-23 3ZGD 1 REMARK LINK REVDAT 1 12-JUN-13 3ZGD 0 JRNL AUTH S.HORER,D.REINERT,K.OSTMANN,Y.HOEVELS,H.NAR JRNL TITL CRYSTAL-CONTACT ENGINEERING TO OBTAIN A CRYSTAL FORM OF THE JRNL TITL 2 KELCH DOMAIN OF HUMAN KEAP1 SUITABLE FOR LIGAND-SOAKING JRNL TITL 3 EXPERIMENTS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 592 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23722832 JRNL DOI 10.1107/S174430911301124X REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 81695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 4014 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5930 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1871 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5650 REMARK 3 BIN R VALUE (WORKING SET) : 0.1867 REMARK 3 BIN FREE R VALUE : 0.1950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.72 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 280 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 667 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.98230 REMARK 3 B22 (A**2) : 2.67880 REMARK 3 B33 (A**2) : -0.69650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.228 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.100 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.094 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.094 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.089 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4530 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6163 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1489 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 99 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 699 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4530 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 560 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5536 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.35 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -3.2189 -9.6266 38.5897 REMARK 3 T TENSOR REMARK 3 T11: 0.0008 T22: -0.0727 REMARK 3 T33: -0.0688 T12: -0.0172 REMARK 3 T13: 0.0563 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.0573 L22: 1.4434 REMARK 3 L33: 0.8453 L12: -0.1452 REMARK 3 L13: 0.0306 L23: -0.2705 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.0720 S13: -0.0442 REMARK 3 S21: 0.0446 S22: 0.0271 S23: 0.1306 REMARK 3 S31: 0.1298 S32: -0.1063 S33: -0.0045 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 10.0765 15.8256 12.0448 REMARK 3 T TENSOR REMARK 3 T11: -0.0652 T22: -0.0112 REMARK 3 T33: -0.0559 T12: -0.0142 REMARK 3 T13: 0.0123 T23: 0.0892 REMARK 3 L TENSOR REMARK 3 L11: 1.3725 L22: 0.8960 REMARK 3 L33: 1.0855 L12: -0.1586 REMARK 3 L13: -0.0315 L23: 0.0320 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.0577 S13: 0.1427 REMARK 3 S21: 0.0237 S22: -0.0343 S23: -0.0500 REMARK 3 S31: -0.0924 S32: 0.0343 S33: 0.0166 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=NA. NUMBER OF REMARK 3 ATOMS WITH PROPER CCP4 ATOM TYPE=5099. NUMBER WITH APPROX REMARK 3 DEFAULT CCP4 ATOM TYPE=0. NUMBER TREATED BY BAD NON-BONDED REMARK 3 CONTACTS=1. REMARK 4 REMARK 4 3ZGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1290055165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1U6D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.86000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.86000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 300 REMARK 465 GLY A 301 REMARK 465 SER A 302 REMARK 465 SER A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 GLY A 312 REMARK 465 LEU A 313 REMARK 465 VAL A 314 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 GLY A 317 REMARK 465 SER A 318 REMARK 465 HIS A 319 REMARK 465 MET A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 VAL A 324 REMARK 465 MET B 300 REMARK 465 GLY B 301 REMARK 465 SER B 302 REMARK 465 SER B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 SER B 310 REMARK 465 SER B 311 REMARK 465 GLY B 312 REMARK 465 LEU B 313 REMARK 465 VAL B 314 REMARK 465 PRO B 315 REMARK 465 ARG B 316 REMARK 465 GLY B 317 REMARK 465 SER B 318 REMARK 465 HIS B 319 REMARK 465 MET B 320 REMARK 465 ALA B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 VAL B 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2116 O HOH B 2117 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 335 100.53 -160.57 REMARK 500 ARG A 336 -38.38 72.30 REMARK 500 GLN A 528 -48.78 -131.29 REMARK 500 HIS A 575 -46.16 -146.74 REMARK 500 PHE B 335 101.31 -161.48 REMARK 500 ARG B 336 -35.10 73.03 REMARK 500 GLN B 528 -51.55 -125.15 REMARK 500 HIS B 575 -50.84 -138.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2095 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A2096 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH A2182 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A2195 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH B2318 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH B2319 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1614 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 337 OE1 REMARK 620 2 SER A 383 OG 101.1 REMARK 620 3 HOH A2015 O 84.4 81.3 REMARK 620 4 HOH A2016 O 96.9 92.2 173.6 REMARK 620 5 HOH A2017 O 84.1 174.9 99.5 86.9 REMARK 620 6 HOH A2067 O 177.1 78.3 98.3 80.3 96.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1614 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1614 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZGC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE KEAP1-NEH2 COMPLEX DBREF 3ZGD A 321 609 UNP Q14145 KEAP1_HUMAN 321 609 DBREF 3ZGD B 321 609 UNP Q14145 KEAP1_HUMAN 321 609 SEQADV 3ZGD MET A 300 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD GLY A 301 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER A 302 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER A 303 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS A 304 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS A 305 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS A 306 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS A 307 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS A 308 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS A 309 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER A 310 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER A 311 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD GLY A 312 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD LEU A 313 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD VAL A 314 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD PRO A 315 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD ARG A 316 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD GLY A 317 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER A 318 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS A 319 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD MET A 320 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD ALA A 540 UNP Q14145 GLU 540 ENGINEERED MUTATION SEQADV 3ZGD ALA A 542 UNP Q14145 GLU 542 ENGINEERED MUTATION SEQADV 3ZGD MET B 300 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD GLY B 301 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER B 302 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER B 303 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS B 304 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS B 305 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS B 306 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS B 307 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS B 308 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS B 309 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER B 310 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER B 311 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD GLY B 312 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD LEU B 313 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD VAL B 314 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD PRO B 315 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD ARG B 316 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD GLY B 317 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD SER B 318 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD HIS B 319 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD MET B 320 UNP Q14145 EXPRESSION TAG SEQADV 3ZGD ALA B 540 UNP Q14145 GLU 540 ENGINEERED MUTATION SEQADV 3ZGD ALA B 542 UNP Q14145 GLU 542 ENGINEERED MUTATION SEQRES 1 A 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 310 LEU VAL PRO ARG GLY SER HIS MET ALA PRO LYS VAL GLY SEQRES 3 A 310 ARG LEU ILE TYR THR ALA GLY GLY TYR PHE ARG GLN SER SEQRES 4 A 310 LEU SER TYR LEU GLU ALA TYR ASN PRO SER ASP GLY THR SEQRES 5 A 310 TRP LEU ARG LEU ALA ASP LEU GLN VAL PRO ARG SER GLY SEQRES 6 A 310 LEU ALA GLY CYS VAL VAL GLY GLY LEU LEU TYR ALA VAL SEQRES 7 A 310 GLY GLY ARG ASN ASN SER PRO ASP GLY ASN THR ASP SER SEQRES 8 A 310 SER ALA LEU ASP CYS TYR ASN PRO MET THR ASN GLN TRP SEQRES 9 A 310 SER PRO CYS ALA PRO MET SER VAL PRO ARG ASN ARG ILE SEQRES 10 A 310 GLY VAL GLY VAL ILE ASP GLY HIS ILE TYR ALA VAL GLY SEQRES 11 A 310 GLY SER HIS GLY CYS ILE HIS HIS ASN SER VAL GLU ARG SEQRES 12 A 310 TYR GLU PRO GLU ARG ASP GLU TRP HIS LEU VAL ALA PRO SEQRES 13 A 310 MET LEU THR ARG ARG ILE GLY VAL GLY VAL ALA VAL LEU SEQRES 14 A 310 ASN ARG LEU LEU TYR ALA VAL GLY GLY PHE ASP GLY THR SEQRES 15 A 310 ASN ARG LEU ASN SER ALA GLU CYS TYR TYR PRO GLU ARG SEQRES 16 A 310 ASN GLU TRP ARG MET ILE THR ALA MET ASN THR ILE ARG SEQRES 17 A 310 SER GLY ALA GLY VAL CYS VAL LEU HIS ASN CYS ILE TYR SEQRES 18 A 310 ALA ALA GLY GLY TYR ASP GLY GLN ASP GLN LEU ASN SER SEQRES 19 A 310 VAL GLU ARG TYR ASP VAL ALA THR ALA THR TRP THR PHE SEQRES 20 A 310 VAL ALA PRO MET LYS HIS ARG ARG SER ALA LEU GLY ILE SEQRES 21 A 310 THR VAL HIS GLN GLY ARG ILE TYR VAL LEU GLY GLY TYR SEQRES 22 A 310 ASP GLY HIS THR PHE LEU ASP SER VAL GLU CYS TYR ASP SEQRES 23 A 310 PRO ASP THR ASP THR TRP SER GLU VAL THR ARG MET THR SEQRES 24 A 310 SER GLY ARG SER GLY VAL GLY VAL ALA VAL THR SEQRES 1 B 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 310 LEU VAL PRO ARG GLY SER HIS MET ALA PRO LYS VAL GLY SEQRES 3 B 310 ARG LEU ILE TYR THR ALA GLY GLY TYR PHE ARG GLN SER SEQRES 4 B 310 LEU SER TYR LEU GLU ALA TYR ASN PRO SER ASP GLY THR SEQRES 5 B 310 TRP LEU ARG LEU ALA ASP LEU GLN VAL PRO ARG SER GLY SEQRES 6 B 310 LEU ALA GLY CYS VAL VAL GLY GLY LEU LEU TYR ALA VAL SEQRES 7 B 310 GLY GLY ARG ASN ASN SER PRO ASP GLY ASN THR ASP SER SEQRES 8 B 310 SER ALA LEU ASP CYS TYR ASN PRO MET THR ASN GLN TRP SEQRES 9 B 310 SER PRO CYS ALA PRO MET SER VAL PRO ARG ASN ARG ILE SEQRES 10 B 310 GLY VAL GLY VAL ILE ASP GLY HIS ILE TYR ALA VAL GLY SEQRES 11 B 310 GLY SER HIS GLY CYS ILE HIS HIS ASN SER VAL GLU ARG SEQRES 12 B 310 TYR GLU PRO GLU ARG ASP GLU TRP HIS LEU VAL ALA PRO SEQRES 13 B 310 MET LEU THR ARG ARG ILE GLY VAL GLY VAL ALA VAL LEU SEQRES 14 B 310 ASN ARG LEU LEU TYR ALA VAL GLY GLY PHE ASP GLY THR SEQRES 15 B 310 ASN ARG LEU ASN SER ALA GLU CYS TYR TYR PRO GLU ARG SEQRES 16 B 310 ASN GLU TRP ARG MET ILE THR ALA MET ASN THR ILE ARG SEQRES 17 B 310 SER GLY ALA GLY VAL CYS VAL LEU HIS ASN CYS ILE TYR SEQRES 18 B 310 ALA ALA GLY GLY TYR ASP GLY GLN ASP GLN LEU ASN SER SEQRES 19 B 310 VAL GLU ARG TYR ASP VAL ALA THR ALA THR TRP THR PHE SEQRES 20 B 310 VAL ALA PRO MET LYS HIS ARG ARG SER ALA LEU GLY ILE SEQRES 21 B 310 THR VAL HIS GLN GLY ARG ILE TYR VAL LEU GLY GLY TYR SEQRES 22 B 310 ASP GLY HIS THR PHE LEU ASP SER VAL GLU CYS TYR ASP SEQRES 23 B 310 PRO ASP THR ASP THR TRP SER GLU VAL THR ARG MET THR SEQRES 24 B 310 SER GLY ARG SER GLY VAL GLY VAL ALA VAL THR HET ACT A1610 4 HET ACT A1611 4 HET ACT A1612 4 HET ACT A1613 4 HET NA A1614 1 HET ACT B1610 4 HET ACT B1611 4 HET ACT B1612 4 HET ACT B1613 4 HET ACT B1614 4 HET ACT B1615 4 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 3 ACT 10(C2 H3 O2 1-) FORMUL 7 NA NA 1+ FORMUL 14 HOH *667(H2 O) SHEET 1 AA 4 THR A 351 ARG A 354 0 SHEET 2 AA 4 LEU A 342 ASN A 346 -1 O ALA A 344 N LEU A 353 SHEET 3 AA 4 LEU A 327 ALA A 331 -1 O ILE A 328 N TYR A 345 SHEET 4 AA 4 GLY A 605 THR A 609 -1 O GLY A 605 N ALA A 331 SHEET 1 AB 4 ALA A 366 VAL A 370 0 SHEET 2 AB 4 LEU A 373 VAL A 377 -1 O LEU A 373 N VAL A 370 SHEET 3 AB 4 LEU A 393 TYR A 396 -1 O ASP A 394 N ALA A 376 SHEET 4 AB 4 TRP A 403 PRO A 405 -1 O SER A 404 N CYS A 395 SHEET 1 AC 2 ARG A 380 SER A 383 0 SHEET 2 AC 2 GLY A 386 ASP A 389 -1 O GLY A 386 N SER A 383 SHEET 1 AD 4 GLY A 417 ILE A 421 0 SHEET 2 AD 4 HIS A 424 VAL A 428 -1 O HIS A 424 N ILE A 421 SHEET 3 AD 4 VAL A 440 GLU A 444 -1 O GLU A 441 N ALA A 427 SHEET 4 AD 4 GLU A 449 LEU A 452 -1 O GLU A 449 N GLU A 444 SHEET 1 AE 2 SER A 431 HIS A 432 0 SHEET 2 AE 2 ILE A 435 HIS A 436 -1 O ILE A 435 N HIS A 432 SHEET 1 AF 4 GLY A 464 LEU A 468 0 SHEET 2 AF 4 LEU A 471 PHE A 478 -1 O LEU A 471 N LEU A 468 SHEET 3 AF 4 ARG A 483 TYR A 491 -1 N LEU A 484 O GLY A 477 SHEET 4 AF 4 GLU A 496 MET A 499 -1 O GLU A 496 N TYR A 491 SHEET 1 AG 4 GLY A 511 LEU A 515 0 SHEET 2 AG 4 CYS A 518 ALA A 522 -1 O CYS A 518 N LEU A 515 SHEET 3 AG 4 VAL A 534 ASP A 538 -1 O GLU A 535 N ALA A 521 SHEET 4 AG 4 THR A 543 VAL A 547 -1 O THR A 543 N ASP A 538 SHEET 1 AH 4 GLY A 558 HIS A 562 0 SHEET 2 AH 4 ARG A 565 LEU A 569 -1 O ARG A 565 N HIS A 562 SHEET 3 AH 4 SER A 580 ASP A 585 -1 O GLU A 582 N VAL A 568 SHEET 4 AH 4 THR A 590 ARG A 596 -1 O THR A 590 N ASP A 585 SHEET 1 BA 4 TRP B 352 ARG B 354 0 SHEET 2 BA 4 LEU B 342 TYR B 345 -1 O ALA B 344 N LEU B 353 SHEET 3 BA 4 LEU B 327 ALA B 331 -1 O ILE B 328 N TYR B 345 SHEET 4 BA 4 GLY B 605 THR B 609 -1 O GLY B 605 N ALA B 331 SHEET 1 BB 4 ALA B 366 VAL B 370 0 SHEET 2 BB 4 LEU B 373 VAL B 377 -1 O LEU B 373 N VAL B 370 SHEET 3 BB 4 LEU B 393 TYR B 396 -1 O ASP B 394 N ALA B 376 SHEET 4 BB 4 TRP B 403 PRO B 405 -1 O SER B 404 N CYS B 395 SHEET 1 BC 2 ARG B 380 SER B 383 0 SHEET 2 BC 2 GLY B 386 ASP B 389 -1 O GLY B 386 N SER B 383 SHEET 1 BD 4 GLY B 417 ILE B 421 0 SHEET 2 BD 4 HIS B 424 VAL B 428 -1 O HIS B 424 N ILE B 421 SHEET 3 BD 4 VAL B 440 TYR B 443 -1 O GLU B 441 N ALA B 427 SHEET 4 BD 4 TRP B 450 LEU B 452 -1 O HIS B 451 N ARG B 442 SHEET 1 BE 2 SER B 431 HIS B 432 0 SHEET 2 BE 2 ILE B 435 HIS B 436 -1 O ILE B 435 N HIS B 432 SHEET 1 BF 4 GLY B 464 LEU B 468 0 SHEET 2 BF 4 LEU B 471 PHE B 478 -1 O LEU B 471 N LEU B 468 SHEET 3 BF 4 ARG B 483 TYR B 491 -1 N LEU B 484 O GLY B 477 SHEET 4 BF 4 GLU B 496 MET B 499 -1 O GLU B 496 N TYR B 491 SHEET 1 BG 4 GLY B 511 LEU B 515 0 SHEET 2 BG 4 CYS B 518 ALA B 522 -1 O CYS B 518 N LEU B 515 SHEET 3 BG 4 VAL B 534 ASP B 538 -1 O GLU B 535 N ALA B 521 SHEET 4 BG 4 THR B 543 VAL B 547 -1 O THR B 543 N ASP B 538 SHEET 1 BH 4 GLY B 558 HIS B 562 0 SHEET 2 BH 4 ARG B 565 LEU B 569 -1 O ARG B 565 N HIS B 562 SHEET 3 BH 4 SER B 580 ASP B 585 -1 O GLU B 582 N VAL B 568 SHEET 4 BH 4 THR B 590 ARG B 596 -1 O THR B 590 N ASP B 585 SSBOND 1 CYS A 434 CYS B 434 1555 1555 2.03 LINK OE1 GLN A 337 NA NA A1614 1555 1555 2.39 LINK OG SER A 383 NA NA A1614 1555 1555 2.65 LINK NA NA A1614 O HOH A2015 1555 1555 2.27 LINK NA NA A1614 O HOH A2016 1555 1555 2.47 LINK NA NA A1614 O HOH A2017 1555 1555 2.47 LINK NA NA A1614 O HOH A2067 1555 1555 2.47 SITE 1 AC1 5 TYR A 491 PRO A 492 GLU A 493 ARG A 494 SITE 2 AC1 5 HOH A2209 SITE 1 AC2 5 VAL A 411 HIS A 432 ILE A 435 HIS A 437 SITE 2 AC2 5 HOH A2127 SITE 1 AC3 5 TYR B 334 ARG B 380 ASN B 382 HOH B2047 SITE 2 AC3 5 HOH B2060 SITE 1 AC4 6 LEU B 355 TYR B 491 PRO B 492 GLU B 493 SITE 2 AC4 6 ARG B 494 HOH B2182 SITE 1 AC5 8 ASP A 385 GLY A 386 ASN A 387 HOH A2074 SITE 2 AC5 8 ARG B 415 PHE B 478 ARG B 483 SER B 508 SITE 1 AC6 4 MET A 399 TYR A 473 TYR A 491 TYR A 537 SITE 1 AC7 5 MET B 399 TYR B 473 TYR B 491 TYR B 537 SITE 2 AC7 5 HOH B2273 SITE 1 AC8 4 ILE A 435 HIS A 436 ARG A 459 HOH A2192 SITE 1 AC9 4 VAL B 411 HIS B 432 HIS B 437 HOH B2112 SITE 1 BC1 7 ARG A 380 ASN A 387 HOH A2074 HOH A2075 SITE 2 BC1 7 GLY B 433 HIS B 436 PHE B 478 SITE 1 BC2 6 GLN A 337 SER A 383 HOH A2015 HOH A2016 SITE 2 BC2 6 HOH A2017 HOH A2067 CRYST1 75.720 75.770 202.040 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013207 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004950 0.00000 MTRIX1 1 0.003531 -0.868400 -0.495800 16.39000 1 MTRIX2 1 -1.000000 -0.003151 -0.001602 0.59740 1 MTRIX3 1 -0.000171 0.495800 -0.868500 41.13000 1