HEADER APOPTOSIS 22-JAN-13 3ZK6 TITLE CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 2). COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-40 AND 81-209; COMPND 5 SYNONYM: BCL2-L-1, APOPTOSIS REGULATOR BCL-X, BCL-XL; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: DELETION MUTATION PERFORMED. TRUNCATION REMOVES COMPND 8 RESIDUES 41-80, AND 210-233 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID.; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P3 KEYWDS APOPTOSIS, INHIBITOR, BCL-2 FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR P.E.CZABOTAR,G.L.LESSENE,B.J.SMITH,P.M.COLMAN REVDAT 4 20-DEC-23 3ZK6 1 REMARK REVDAT 3 05-JUN-13 3ZK6 1 JRNL REVDAT 2 08-MAY-13 3ZK6 1 JRNL REVDAT 1 24-APR-13 3ZK6 0 JRNL AUTH G.L.LESSENE,P.E.CZABOTAR,B.E.SLEEBS,K.ZOBEL,K.L.LOWES, JRNL AUTH 2 J.M.ADAMS,J.B.BAELL,P.M.COLMAN,K.DESHAYES,W.J.FAIRBROTHER, JRNL AUTH 3 J.A.FLYGARE,P.GIBBONS,W.J.A.KERSTEN,S.KULASEGARAM,R.M.MOSS, JRNL AUTH 4 J.P.PARISOT,B.J.SMITH,I.P.STREET,H.YANG,D.C.S.HUANG, JRNL AUTH 5 K.G.WATSON JRNL TITL STRUCTURE-GUIDED DESIGN OF A SELECTIVE BCL-XL INHIBITOR JRNL REF NAT.CHEM.BIOL. V. 9 390 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23603658 JRNL DOI 10.1038/NCHEMBIO.1246 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 17274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1603 - 4.5032 0.95 2788 147 0.2120 0.2464 REMARK 3 2 4.5032 - 3.5764 0.95 2737 144 0.2005 0.2348 REMARK 3 3 3.5764 - 3.1249 0.95 2741 144 0.2221 0.2797 REMARK 3 4 3.1249 - 2.8395 0.95 2741 146 0.2342 0.2505 REMARK 3 5 2.8395 - 2.6361 0.95 2739 144 0.2485 0.3198 REMARK 3 6 2.6361 - 2.4807 0.92 2647 141 0.2659 0.3492 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4900 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2482 REMARK 3 ANGLE : 1.312 3362 REMARK 3 CHIRALITY : 0.082 340 REMARK 3 PLANARITY : 0.005 428 REMARK 3 DIHEDRAL : 19.667 862 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:100) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2023 37.2013 -9.7401 REMARK 3 T TENSOR REMARK 3 T11: 0.5925 T22: 0.5994 REMARK 3 T33: 0.1961 T12: 0.0296 REMARK 3 T13: 0.1164 T23: -0.1531 REMARK 3 L TENSOR REMARK 3 L11: 6.6055 L22: 6.4340 REMARK 3 L33: 2.5457 L12: 2.6955 REMARK 3 L13: -2.1526 L23: -0.1009 REMARK 3 S TENSOR REMARK 3 S11: -0.5071 S12: 0.5923 S13: -0.9946 REMARK 3 S21: -0.4293 S22: 0.3562 S23: -0.8729 REMARK 3 S31: -0.0959 S32: 0.2140 S33: -0.0522 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 101:136) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4324 49.3170 3.6748 REMARK 3 T TENSOR REMARK 3 T11: 0.6747 T22: 0.7311 REMARK 3 T33: 0.2839 T12: -0.1447 REMARK 3 T13: -0.0306 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 8.2892 L22: 6.9331 REMARK 3 L33: 5.1399 L12: 0.9527 REMARK 3 L13: 1.0328 L23: -0.5070 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.1004 S13: 0.3257 REMARK 3 S21: 0.4667 S22: 0.4960 S23: -0.4632 REMARK 3 S31: -1.1828 S32: 0.5301 S33: -0.5025 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 137:177) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8244 42.8651 -1.3703 REMARK 3 T TENSOR REMARK 3 T11: 0.5070 T22: 0.6937 REMARK 3 T33: 0.2597 T12: -0.0609 REMARK 3 T13: 0.0338 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 4.4595 L22: 3.9574 REMARK 3 L33: 2.8687 L12: -0.1494 REMARK 3 L13: 0.7074 L23: 0.3271 REMARK 3 S TENSOR REMARK 3 S11: -0.3978 S12: 0.0329 S13: 0.1149 REMARK 3 S21: -0.1605 S22: 0.5902 S23: -0.3463 REMARK 3 S31: -0.4164 S32: 0.3309 S33: -0.2126 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 178:196) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7975 32.2291 0.9068 REMARK 3 T TENSOR REMARK 3 T11: 0.5142 T22: 0.8260 REMARK 3 T33: 0.1785 T12: -0.0206 REMARK 3 T13: -0.0677 T23: 0.0920 REMARK 3 L TENSOR REMARK 3 L11: 1.8697 L22: 5.0156 REMARK 3 L33: 8.1433 L12: 1.2705 REMARK 3 L13: 1.1469 L23: 3.1769 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: 0.2735 S13: 0.0373 REMARK 3 S21: -0.2998 S22: -0.0746 S23: 0.1005 REMARK 3 S31: 0.2677 S32: -0.0706 S33: 0.1318 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 2:100) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5815 64.7406 10.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.6810 T22: 0.5479 REMARK 3 T33: 0.2604 T12: -0.0041 REMARK 3 T13: -0.0620 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.5620 L22: 5.8873 REMARK 3 L33: 7.7006 L12: 1.8706 REMARK 3 L13: 0.2430 L23: 3.1379 REMARK 3 S TENSOR REMARK 3 S11: 0.2069 S12: -0.4564 S13: 0.2345 REMARK 3 S21: -0.2689 S22: -0.2486 S23: 0.3384 REMARK 3 S31: -0.5952 S32: -0.2101 S33: 0.2433 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 101:136) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6888 65.0325 -3.4082 REMARK 3 T TENSOR REMARK 3 T11: 0.6893 T22: 0.5163 REMARK 3 T33: 0.2887 T12: 0.2076 REMARK 3 T13: 0.0845 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 4.6370 L22: 7.4730 REMARK 3 L33: 6.9174 L12: 1.4613 REMARK 3 L13: -0.0807 L23: -1.5308 REMARK 3 S TENSOR REMARK 3 S11: 0.1317 S12: 0.2406 S13: 0.5346 REMARK 3 S21: -0.4734 S22: 0.1443 S23: 0.0715 REMARK 3 S31: -0.8805 S32: 0.6862 S33: -0.3841 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 137:177) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2350 69.3978 1.6526 REMARK 3 T TENSOR REMARK 3 T11: 0.7561 T22: 0.3693 REMARK 3 T33: 0.3350 T12: 0.2038 REMARK 3 T13: 0.0495 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 5.6801 L22: 5.8767 REMARK 3 L33: 2.5532 L12: 1.0219 REMARK 3 L13: 1.3958 L23: -0.2767 REMARK 3 S TENSOR REMARK 3 S11: -0.2287 S12: 0.2728 S13: 1.0006 REMARK 3 S21: -0.0748 S22: 0.0425 S23: 0.2406 REMARK 3 S31: -0.4782 S32: 0.0406 S33: 0.0491 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 178:196) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3787 53.3632 -0.6668 REMARK 3 T TENSOR REMARK 3 T11: 0.7499 T22: 0.4428 REMARK 3 T33: 0.3618 T12: 0.1685 REMARK 3 T13: -0.1371 T23: -0.0896 REMARK 3 L TENSOR REMARK 3 L11: 9.5551 L22: 2.8596 REMARK 3 L33: 3.5778 L12: 2.7939 REMARK 3 L13: -4.9605 L23: -2.5337 REMARK 3 S TENSOR REMARK 3 S11: -0.8250 S12: -0.1499 S13: -0.2267 REMARK 3 S21: 0.3169 S22: -0.1718 S23: -0.0057 REMARK 3 S31: 0.4515 S32: -0.5274 S33: 0.5852 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1167 REMARK 3 RMSD : 0.042 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1290055496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96426 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17277 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 46.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.450 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.14 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PQ1 CHAIN A. REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M (NH4)2 SO4, 0.1 M BIS TRIS, PH REMARK 280 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.60500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.30250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.90750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ASP A 29 REMARK 465 VAL A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 ASN A 33 REMARK 465 ARG A 34 REMARK 465 THR A 35 REMARK 465 GLU A 36 REMARK 465 ALA A 37 REMARK 465 PRO A 38 REMARK 465 GLU A 39 REMARK 465 GLY A 40 REMARK 465 ASN A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 465 LEU A 210 REMARK 465 GLU A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 MET B -3 REMARK 465 SER B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASP B 29 REMARK 465 VAL B 30 REMARK 465 GLU B 31 REMARK 465 GLU B 32 REMARK 465 ASN B 33 REMARK 465 ARG B 34 REMARK 465 THR B 35 REMARK 465 GLU B 36 REMARK 465 ALA B 37 REMARK 465 PRO B 38 REMARK 465 GLU B 39 REMARK 465 GLY B 40 REMARK 465 ASN B 198 REMARK 465 ALA B 199 REMARK 465 ALA B 200 REMARK 465 ALA B 201 REMARK 465 GLU B 202 REMARK 465 SER B 203 REMARK 465 ARG B 204 REMARK 465 LYS B 205 REMARK 465 GLY B 206 REMARK 465 GLN B 207 REMARK 465 GLU B 208 REMARK 465 ARG B 209 REMARK 465 LEU B 210 REMARK 465 GLU B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2018 O HOH B 2019 2.06 REMARK 500 NE2 GLN B 88 O HOH B 2006 2.15 REMARK 500 OH TYR A 22 OD1 ASP A 156 2.15 REMARK 500 OH TYR B 22 OD1 ASP B 156 2.15 REMARK 500 O HOH B 2008 O HOH B 2010 2.15 REMARK 500 O HOH B 2021 O HOH B 2022 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 132 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 132 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 132 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 111 34.45 -96.95 REMARK 500 LEU A 112 81.11 -167.97 REMARK 500 HIS A 113 95.09 -68.00 REMARK 500 GLU A 158 18.81 47.68 REMARK 500 MET A 159 47.63 -92.52 REMARK 500 GLN B 111 34.07 -95.97 REMARK 500 LEU B 112 81.59 -168.45 REMARK 500 HIS B 113 94.85 -68.44 REMARK 500 GLU B 158 18.55 47.04 REMARK 500 MET B 159 47.95 -92.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H1I A 1198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H1I B 1198 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZLN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 3). REMARK 900 RELATED ID: 3ZLO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (COMPOUND 6). REMARK 900 RELATED ID: 3ZLR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH INHIBITOR (WEHI-539). REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 41 TO 80 REMOVED, LAST 24 RESIDUES TRUNCATED DBREF 3ZK6 A 1 40 UNP Q07817 B2CL1_HUMAN 1 40 DBREF 3ZK6 A 81 209 UNP Q07817 B2CL1_HUMAN 81 209 DBREF 3ZK6 B 1 40 UNP Q07817 B2CL1_HUMAN 1 40 DBREF 3ZK6 B 81 209 UNP Q07817 B2CL1_HUMAN 81 209 SEQADV 3ZK6 MET A -3 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 SER A -2 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 MET A -1 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 ALA A 0 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 LEU A 210 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 GLU A 211 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS A 212 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS A 213 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS A 214 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS A 215 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS A 216 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS A 217 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 MET B -3 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 SER B -2 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 MET B -1 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 ALA B 0 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 LEU B 210 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 GLU B 211 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS B 212 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS B 213 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS B 214 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS B 215 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS B 216 UNP Q07817 EXPRESSION TAG SEQADV 3ZK6 HIS B 217 UNP Q07817 EXPRESSION TAG SEQRES 1 A 181 MET SER MET ALA MET SER GLN SER ASN ARG GLU LEU VAL SEQRES 2 A 181 VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR SEQRES 3 A 181 SER TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR SEQRES 4 A 181 GLU ALA PRO GLU GLY ILE PRO MET ALA ALA VAL LYS GLN SEQRES 5 A 181 ALA LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR SEQRES 6 A 181 ARG ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE SEQRES 7 A 181 THR PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL SEQRES 8 A 181 ASN GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE SEQRES 9 A 181 VAL ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SEQRES 10 A 181 SER VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE SEQRES 11 A 181 ALA ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU SEQRES 12 A 181 PRO TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL SEQRES 13 A 181 GLU LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS SEQRES 14 A 181 GLY GLN GLU ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 181 MET SER MET ALA MET SER GLN SER ASN ARG GLU LEU VAL SEQRES 2 B 181 VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR SEQRES 3 B 181 SER TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR SEQRES 4 B 181 GLU ALA PRO GLU GLY ILE PRO MET ALA ALA VAL LYS GLN SEQRES 5 B 181 ALA LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR SEQRES 6 B 181 ARG ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE SEQRES 7 B 181 THR PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL SEQRES 8 B 181 ASN GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE SEQRES 9 B 181 VAL ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SEQRES 10 B 181 SER VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE SEQRES 11 B 181 ALA ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU SEQRES 12 B 181 PRO TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL SEQRES 13 B 181 GLU LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS SEQRES 14 B 181 GLY GLN GLU ARG LEU GLU HIS HIS HIS HIS HIS HIS HET H1I A1198 41 HET H1I B1198 41 HETNAM H1I N-(3-(5-(1-(2-(BENZO[D]THIAZOL-2-YL)HYDRAZONO)ETHYL) HETNAM 2 H1I FURAN-2-YL)PHENYLSULFONYL)-6-PHENYLHEXANAMIDE FORMUL 3 H1I 2(C31 H30 N4 O4 S2) FORMUL 5 HOH *54(H2 O) HELIX 1 1 GLN A 3 GLY A 21 1 19 HELIX 2 2 ILE A 81 TYR A 101 1 21 HELIX 3 3 ARG A 102 ALA A 104 5 3 HELIX 4 4 ALA A 119 ASN A 128 1 10 HELIX 5 5 GLU A 129 PHE A 131 5 3 HELIX 6 6 ASN A 136 LYS A 157 1 22 HELIX 7 7 VAL A 161 LEU A 178 1 18 HELIX 8 8 LEU A 178 ASN A 185 1 8 HELIX 9 9 GLY A 186 GLY A 196 1 11 HELIX 10 10 GLN B 3 GLY B 21 1 19 HELIX 11 11 ILE B 81 TYR B 101 1 21 HELIX 12 12 ARG B 102 ALA B 104 5 3 HELIX 13 13 ALA B 119 ASN B 128 1 10 HELIX 14 14 GLU B 129 PHE B 131 5 3 HELIX 15 15 ASN B 136 LYS B 157 1 22 HELIX 16 16 VAL B 161 LEU B 178 1 18 HELIX 17 17 LEU B 178 ASN B 185 1 8 HELIX 18 18 GLY B 186 GLY B 196 1 11 SITE 1 AC1 18 PHE A 97 ARG A 102 PHE A 105 SER A 106 SITE 2 AC1 18 LEU A 108 LEU A 130 ASN A 136 GLY A 138 SITE 3 AC1 18 ARG A 139 ALA A 142 SER A 145 PHE A 146 SITE 4 AC1 18 HOH A2026 PHE B 97 ALA B 104 GLY B 138 SITE 5 AC1 18 TYR B 195 H1I B1198 SITE 1 AC2 15 PHE A 97 ALA A 104 TYR A 195 H1I A1198 SITE 2 AC2 15 HOH A2026 ARG B 102 PHE B 105 SER B 106 SITE 3 AC2 15 ASP B 107 LEU B 108 THR B 109 GLU B 129 SITE 4 AC2 15 LEU B 130 ASN B 136 ARG B 139 CRYST1 65.200 65.200 117.210 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008532 0.00000 MTRIX1 1 -0.001619 0.999994 0.003115 -32.56200 1 MTRIX2 1 0.999999 0.001621 -0.000549 32.52020 1 MTRIX3 1 -0.000554 0.003115 -0.999995 0.07304 1