HEADER HYDROLASE 12-FEB-13 3ZMR TITLE BACTEROIDES OVATUS GH5 XYLOGLUCANASE IN COMPLEX WITH A XXXG TITLE 2 HEPTASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE (GLYCOSYL HYDROLASE FAMILY 5); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XYLOGLUCANASE; COMPND 5 EC: 3.2.1.151; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 28116; SOURCE 4 ATCC: 8483; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS HYDROLASE, XYLOGLUCAN EXPDTA X-RAY DIFFRACTION AUTHOR J.LARSBRINK,T.E.ROGERS,G.R.HEMSWORTH,L.S.MCKEE,O.SPADIUT,S.KLINTER, AUTHOR 2 N.A.PUDLO,K.URS,A.G.KELLY,S.N.CEDERHOLM,G.J.DAVIES,E.C.MARTENS, AUTHOR 3 H.BRUMER REVDAT 5 20-DEC-23 3ZMR 1 HETSYN REVDAT 4 29-JUL-20 3ZMR 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 05-MAR-14 3ZMR 1 JRNL REVDAT 2 05-FEB-14 3ZMR 1 JRNL REVDAT 1 15-JAN-14 3ZMR 0 JRNL AUTH J.LARSBRINK,T.E.ROGERS,G.R.HEMSWORTH,L.S.MCKEE,A.S.TAUZIN, JRNL AUTH 2 O.SPADIUT,S.KLINTER,N.A.PUDLO,K.URS,N.M.KOROPATKIN, JRNL AUTH 3 A.L.CREAGH,C.A.HAYNES,A.G.KELLY,S.N.CEDERHOLM,G.J.DAVIES, JRNL AUTH 4 E.C.MARTENS,H.BRUMER JRNL TITL A DISCRETE GENETIC LOCUS CONFERS XYLOGLUCAN METABOLISM IN JRNL TITL 2 SELECT HUMAN GUT BACTEROIDETES JRNL REF NATURE V. 506 498 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 24463512 JRNL DOI 10.1038/NATURE12907 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 197432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 767 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 224 REMARK 3 SOLVENT ATOMS : 1341 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.807 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7780 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7155 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10617 ; 1.462 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16440 ; 0.903 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 971 ; 6.316 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 386 ;33.717 ;25.026 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1201 ;11.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;15.855 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1205 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8905 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1819 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 14907 ;10.993 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 353 ;35.290 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 15713 ;41.449 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 3ZMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 207943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 72.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2JEP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 20% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 5,000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.62000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 36 REMARK 465 ASP A 37 REMARK 465 GLU A 38 REMARK 465 LYS A 39 REMARK 465 GLY A 40 REMARK 465 GLY A 41 REMARK 465 MET B 36 REMARK 465 ASP B 37 REMARK 465 GLU B 38 REMARK 465 LYS B 39 REMARK 465 GLY B 40 REMARK 465 GLY B 41 REMARK 465 GLU B 504 REMARK 465 HIS B 505 REMARK 465 HIS B 506 REMARK 465 HIS B 507 REMARK 465 HIS B 508 REMARK 465 HIS B 509 REMARK 465 HIS B 510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 503 CG CD1 CD2 REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 HIS A 505 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 506 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 507 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 LYS B 158 CE NZ REMARK 470 LEU B 503 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 BGC C 2 O HOH A 2670 2.05 REMARK 500 O HOH A 2548 O HOH A 2549 2.10 REMARK 500 NH1 ARG B 271 O1 EDO B 1510 2.12 REMARK 500 OD1 ASP B 347 C1 EDO B 1505 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 158 -76.61 74.72 REMARK 500 THR A 166 -96.48 -131.49 REMARK 500 GLU A 253 53.00 37.48 REMARK 500 ASN A 296 -109.82 -111.35 REMARK 500 TYR A 476 -148.49 -109.96 REMARK 500 HIS A 507 70.95 -104.15 REMARK 500 PRO B 68 -167.52 -79.94 REMARK 500 LYS B 158 -77.17 74.01 REMARK 500 THR B 166 -99.66 -128.22 REMARK 500 GLU B 253 54.38 38.94 REMARK 500 ASN B 296 -109.05 -108.42 REMARK 500 THR B 346 27.14 47.26 REMARK 500 TYR B 476 -147.99 -106.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 502 LEU B 503 140.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2047 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A2124 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2151 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A2376 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2087 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B2219 DISTANCE = 5.99 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLC A 1519 REMARK 610 BGC C 1 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AC" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BC" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 999 REMARK 999 SEQUENCE REMARK 999 B. OVATUS SIGNAL PEPTIDE REMOVED FOR EXPRESSION DBREF 3ZMR A 37 502 UNP A7LXT7 A7LXT7_BACOV 37 502 DBREF 3ZMR B 37 502 UNP A7LXT7 A7LXT7_BACOV 37 502 SEQADV 3ZMR MET A 36 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR LEU A 503 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR GLU A 504 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS A 505 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS A 506 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS A 507 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS A 508 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS A 509 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS A 510 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR MET B 36 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR LEU B 503 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR GLU B 504 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS B 505 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS B 506 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS B 507 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS B 508 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS B 509 UNP A7LXT7 EXPRESSION TAG SEQADV 3ZMR HIS B 510 UNP A7LXT7 EXPRESSION TAG SEQRES 1 A 475 MET ASP GLU LYS GLY GLY SER LEU GLU VAL ALA GLN GLU SEQRES 2 A 475 TYR ARG ASN LEU GLU PHE ASP ALA ARG GLY SER ARG GLN SEQRES 3 A 475 THR ILE GLN ILE ASP GLY PRO ALA GLU TRP HIS ILE SER SEQRES 4 A 475 THR SER GLU SER TRP CYS LYS SER SER HIS THR ILE GLY SEQRES 5 A 475 GLU GLY LYS GLN TYR VAL ASN ILE THR VAL GLU ALA ASN SEQRES 6 A 475 ASP THR GLN LYS GLU ARG THR ALA THR VAL THR VAL SER SEQRES 7 A 475 ALA SER GLY ALA PRO ASP ILE ILE ILE ASN VAL LYS GLN SEQRES 8 A 475 SER LEU TYR SER VAL PRO ALA TYR ASP GLU TYR ILE ALA SEQRES 9 A 475 PRO ASP ASN THR GLY MET ARG ASP LEU THR SER MET GLN SEQRES 10 A 475 LEU SER ALA LEU MET LYS ALA GLY VAL ASN VAL GLY ASN SEQRES 11 A 475 THR PHE GLU ALA VAL ILE VAL GLY ASN ASP GLY SER LEU SEQRES 12 A 475 SER GLY ASP GLU THR CYS TRP GLY ASN PRO THR PRO ASN SEQRES 13 A 475 LYS VAL LEU PHE GLU GLY ILE LYS ALA ALA GLY PHE ASP SEQRES 14 A 475 VAL VAL ARG ILE PRO VAL ALA TYR SER HIS GLN PHE GLU SEQRES 15 A 475 ASP ALA ALA THR TYR LYS ILE LYS SER ALA TRP MET ASP SEQRES 16 A 475 LYS VAL GLU ALA ALA VAL LYS ALA ALA LEU ASP ALA GLY SEQRES 17 A 475 LEU TYR VAL ILE ILE ASN ILE HIS TRP GLU GLY GLY TRP SEQRES 18 A 475 LEU ASN HIS PRO VAL ASP ALA ASN LYS GLU ALA LEU ASP SEQRES 19 A 475 GLU ARG LEU GLU ALA MET TRP LYS GLN ILE ALA LEU ARG SEQRES 20 A 475 PHE ARG ASP TYR ASP ASP ARG LEU LEU PHE ALA GLY THR SEQRES 21 A 475 ASN GLU VAL ASN ASN ASP ASP ALA ASN GLY ALA GLN PRO SEQRES 22 A 475 THR GLU GLU ASN TYR ARG VAL GLN ASN GLY PHE ASN GLN SEQRES 23 A 475 VAL PHE VAL ASN THR VAL ARG ALA THR GLY GLY ARG ASN SEQRES 24 A 475 HIS TYR ARG HIS LEU ILE VAL GLN ALA TYR ASN THR ASP SEQRES 25 A 475 VAL ALA LYS ALA VAL ALA HIS PHE THR MET PRO LEU ASP SEQRES 26 A 475 ILE VAL GLN ASN ARG ILE PHE LEU GLU CYS HIS TYR TYR SEQRES 27 A 475 ASP PRO TYR ASP PHE THR ILE MET PRO ASN ASP GLU ASN SEQRES 28 A 475 PHE LYS SER GLN TRP GLY ALA ALA PHE ALA GLY GLY ASP SEQRES 29 A 475 VAL SER ALA THR GLY GLN GLU GLY ASP ILE GLU ALA THR SEQRES 30 A 475 LEU SER SER LEU ASN VAL PHE ILE ASN ASN ASN VAL PRO SEQRES 31 A 475 VAL ILE ILE GLY GLU TYR GLY PRO THR LEU ARG ASP GLN SEQRES 32 A 475 LEU THR GLY GLU ALA LEU GLU ASN HIS LEU LYS SER ARG SEQRES 33 A 475 ASN ASP TYR ILE GLU TYR VAL VAL LYS THR CYS VAL LYS SEQRES 34 A 475 ASN LYS LEU VAL PRO LEU TYR TRP ASP ALA GLY TYR THR SEQRES 35 A 475 GLU LYS LEU PHE ASP ARG THR THR GLY GLN PRO HIS ASN SEQRES 36 A 475 ALA ALA SER ILE ALA ALA ILE MET LYS GLY LEU ASN LEU SEQRES 37 A 475 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 475 MET ASP GLU LYS GLY GLY SER LEU GLU VAL ALA GLN GLU SEQRES 2 B 475 TYR ARG ASN LEU GLU PHE ASP ALA ARG GLY SER ARG GLN SEQRES 3 B 475 THR ILE GLN ILE ASP GLY PRO ALA GLU TRP HIS ILE SER SEQRES 4 B 475 THR SER GLU SER TRP CYS LYS SER SER HIS THR ILE GLY SEQRES 5 B 475 GLU GLY LYS GLN TYR VAL ASN ILE THR VAL GLU ALA ASN SEQRES 6 B 475 ASP THR GLN LYS GLU ARG THR ALA THR VAL THR VAL SER SEQRES 7 B 475 ALA SER GLY ALA PRO ASP ILE ILE ILE ASN VAL LYS GLN SEQRES 8 B 475 SER LEU TYR SER VAL PRO ALA TYR ASP GLU TYR ILE ALA SEQRES 9 B 475 PRO ASP ASN THR GLY MET ARG ASP LEU THR SER MET GLN SEQRES 10 B 475 LEU SER ALA LEU MET LYS ALA GLY VAL ASN VAL GLY ASN SEQRES 11 B 475 THR PHE GLU ALA VAL ILE VAL GLY ASN ASP GLY SER LEU SEQRES 12 B 475 SER GLY ASP GLU THR CYS TRP GLY ASN PRO THR PRO ASN SEQRES 13 B 475 LYS VAL LEU PHE GLU GLY ILE LYS ALA ALA GLY PHE ASP SEQRES 14 B 475 VAL VAL ARG ILE PRO VAL ALA TYR SER HIS GLN PHE GLU SEQRES 15 B 475 ASP ALA ALA THR TYR LYS ILE LYS SER ALA TRP MET ASP SEQRES 16 B 475 LYS VAL GLU ALA ALA VAL LYS ALA ALA LEU ASP ALA GLY SEQRES 17 B 475 LEU TYR VAL ILE ILE ASN ILE HIS TRP GLU GLY GLY TRP SEQRES 18 B 475 LEU ASN HIS PRO VAL ASP ALA ASN LYS GLU ALA LEU ASP SEQRES 19 B 475 GLU ARG LEU GLU ALA MET TRP LYS GLN ILE ALA LEU ARG SEQRES 20 B 475 PHE ARG ASP TYR ASP ASP ARG LEU LEU PHE ALA GLY THR SEQRES 21 B 475 ASN GLU VAL ASN ASN ASP ASP ALA ASN GLY ALA GLN PRO SEQRES 22 B 475 THR GLU GLU ASN TYR ARG VAL GLN ASN GLY PHE ASN GLN SEQRES 23 B 475 VAL PHE VAL ASN THR VAL ARG ALA THR GLY GLY ARG ASN SEQRES 24 B 475 HIS TYR ARG HIS LEU ILE VAL GLN ALA TYR ASN THR ASP SEQRES 25 B 475 VAL ALA LYS ALA VAL ALA HIS PHE THR MET PRO LEU ASP SEQRES 26 B 475 ILE VAL GLN ASN ARG ILE PHE LEU GLU CYS HIS TYR TYR SEQRES 27 B 475 ASP PRO TYR ASP PHE THR ILE MET PRO ASN ASP GLU ASN SEQRES 28 B 475 PHE LYS SER GLN TRP GLY ALA ALA PHE ALA GLY GLY ASP SEQRES 29 B 475 VAL SER ALA THR GLY GLN GLU GLY ASP ILE GLU ALA THR SEQRES 30 B 475 LEU SER SER LEU ASN VAL PHE ILE ASN ASN ASN VAL PRO SEQRES 31 B 475 VAL ILE ILE GLY GLU TYR GLY PRO THR LEU ARG ASP GLN SEQRES 32 B 475 LEU THR GLY GLU ALA LEU GLU ASN HIS LEU LYS SER ARG SEQRES 33 B 475 ASN ASP TYR ILE GLU TYR VAL VAL LYS THR CYS VAL LYS SEQRES 34 B 475 ASN LYS LEU VAL PRO LEU TYR TRP ASP ALA GLY TYR THR SEQRES 35 B 475 GLU LYS LEU PHE ASP ARG THR THR GLY GLN PRO HIS ASN SEQRES 36 B 475 ALA ALA SER ILE ALA ALA ILE MET LYS GLY LEU ASN LEU SEQRES 37 B 475 GLU HIS HIS HIS HIS HIS HIS HET GLO D 1 12 HET BGC D 2 11 HET BGC D 3 11 HET BGC D 4 11 HET XYS D 5 9 HET XYS D 6 9 HET XYS D 7 9 HET BTB A1511 14 HET EDO A1512 4 HET EDO A1513 4 HET EDO A1514 4 HET EDO A1515 4 HET EDO A1516 4 HET EDO A1517 4 HET GLC A1519 11 HET EDO A1600 4 HET EDO B1504 4 HET EDO B1505 4 HET EDO B1506 4 HET EDO B1507 4 HET EDO B1508 4 HET EDO B1509 4 HET EDO B1510 4 HET BGC C 1 11 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET XYS C 5 9 HET XYS C 6 9 HET XYS C 7 9 HETNAM GLO D-GLUCOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM EDO 1,2-ETHANEDIOL HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLO D-GLUCOSE IN LINEAR FORM HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN BTB BIS-TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLO C6 H12 O6 FORMUL 3 BGC 7(C6 H12 O6) FORMUL 3 XYS 6(C5 H10 O5) FORMUL 4 BTB C8 H19 N O5 FORMUL 5 EDO 14(C2 H6 O2) FORMUL 11 GLC C6 H12 O6 FORMUL 27 HOH *1341(H2 O) HELIX 1 1 ALA A 46 TYR A 49 5 4 HELIX 2 2 THR A 149 LYS A 158 1 10 HELIX 3 3 ASN A 191 ALA A 201 1 11 HELIX 4 4 LYS A 225 ALA A 242 1 18 HELIX 5 5 VAL A 261 ARG A 284 1 24 HELIX 6 6 THR A 309 ALA A 329 1 21 HELIX 7 7 GLY A 332 TYR A 336 5 5 HELIX 8 8 TYR A 344 THR A 346 5 3 HELIX 9 9 ASP A 347 PHE A 355 1 9 HELIX 10 10 PRO A 375 ILE A 380 1 6 HELIX 11 11 GLY A 392 ALA A 396 5 5 HELIX 12 12 GLN A 405 SER A 415 1 11 HELIX 13 13 LEU A 416 ASN A 422 1 7 HELIX 14 14 THR A 440 ASN A 465 1 26 HELIX 15 15 ASN A 490 HIS A 507 1 18 HELIX 16 16 GLN B 47 TYR B 49 5 3 HELIX 17 17 THR B 149 LYS B 158 1 10 HELIX 18 18 ASN B 191 ALA B 201 1 11 HELIX 19 19 LYS B 225 ALA B 242 1 18 HELIX 20 20 VAL B 261 PHE B 283 1 23 HELIX 21 21 THR B 309 ALA B 329 1 21 HELIX 22 22 GLY B 332 TYR B 336 5 5 HELIX 23 23 TYR B 344 THR B 346 5 3 HELIX 24 24 ASP B 347 PHE B 355 1 9 HELIX 25 25 PRO B 375 ILE B 380 1 6 HELIX 26 26 GLY B 392 ALA B 396 5 5 HELIX 27 27 GLN B 405 SER B 415 1 11 HELIX 28 28 LEU B 416 ASN B 421 1 6 HELIX 29 29 THR B 440 ASN B 465 1 26 HELIX 30 30 ASN B 490 ASN B 502 1 13 SHEET 1 AA 5 ASN A 51 PHE A 54 0 SHEET 2 AA 5 ILE A 120 GLN A 126 1 O ASN A 123 N LEU A 52 SHEET 3 AA 5 ARG A 106 SER A 113 -1 O ARG A 106 N GLN A 126 SHEET 4 AA 5 TRP A 71 THR A 75 -1 O HIS A 72 N SER A 113 SHEET 5 AA 5 ILE A 86 GLY A 87 -1 O GLY A 87 N TRP A 71 SHEET 1 AB 3 SER A 59 ASP A 66 0 SHEET 2 AB 3 LYS A 90 VAL A 97 -1 O GLN A 91 N ILE A 65 SHEET 3 AB 3 CYS A 80 SER A 82 -1 O LYS A 81 N THR A 96 SHEET 1 AC 9 GLY A 160 ASN A 162 0 SHEET 2 AC 9 VAL A 205 ILE A 208 1 O VAL A 205 N VAL A 161 SHEET 3 AC 9 TYR A 245 ASN A 249 1 O TYR A 245 N VAL A 206 SHEET 4 AC 9 LEU A 290 ALA A 293 1 O LEU A 291 N ILE A 248 SHEET 5 AC 9 LEU A 339 GLN A 342 1 N ILE A 340 O PHE A 292 SHEET 6 AC 9 ILE A 366 TYR A 372 1 O PHE A 367 N VAL A 341 SHEET 7 AC 9 VAL A 426 TYR A 431 1 O ILE A 427 N CYS A 370 SHEET 8 AC 9 VAL A 468 TYR A 471 1 O VAL A 468 N ILE A 428 SHEET 9 AC 9 GLY A 160 ASN A 162 1 O GLY A 160 N TYR A 471 SHEET 1 AD 2 ILE A 171 VAL A 172 0 SHEET 2 AD 2 LEU A 178 SER A 179 -1 O SER A 179 N ILE A 171 SHEET 1 AE 2 PHE A 216 ASP A 218 0 SHEET 2 AE 2 LYS A 223 ILE A 224 -1 O LYS A 223 N GLU A 217 SHEET 1 BA 4 GLU B 44 VAL B 45 0 SHEET 2 BA 4 SER B 59 ASP B 66 -1 O ASP B 66 N GLU B 44 SHEET 3 BA 4 LYS B 90 VAL B 97 -1 O GLN B 91 N ILE B 65 SHEET 4 BA 4 CYS B 80 SER B 82 -1 O LYS B 81 N THR B 96 SHEET 1 BB 5 ASN B 51 PHE B 54 0 SHEET 2 BB 5 ILE B 120 GLN B 126 1 O ASN B 123 N LEU B 52 SHEET 3 BB 5 ARG B 106 SER B 113 -1 O ARG B 106 N GLN B 126 SHEET 4 BB 5 TRP B 71 THR B 75 -1 O HIS B 72 N SER B 113 SHEET 5 BB 5 ILE B 86 GLY B 87 -1 O GLY B 87 N TRP B 71 SHEET 1 BC 9 GLY B 160 ASN B 162 0 SHEET 2 BC 9 VAL B 205 ILE B 208 1 O VAL B 205 N VAL B 161 SHEET 3 BC 9 TYR B 245 ASN B 249 1 O TYR B 245 N VAL B 206 SHEET 4 BC 9 LEU B 290 ALA B 293 1 O LEU B 291 N ILE B 248 SHEET 5 BC 9 LEU B 339 GLN B 342 1 N ILE B 340 O PHE B 292 SHEET 6 BC 9 ILE B 366 TYR B 372 1 O PHE B 367 N VAL B 341 SHEET 7 BC 9 VAL B 426 TYR B 431 1 O ILE B 427 N CYS B 370 SHEET 8 BC 9 VAL B 468 TYR B 471 1 O VAL B 468 N ILE B 428 SHEET 9 BC 9 GLY B 160 ASN B 162 1 O GLY B 160 N TYR B 471 SHEET 1 BD 2 ILE B 171 VAL B 172 0 SHEET 2 BD 2 LEU B 178 SER B 179 -1 O SER B 179 N ILE B 171 SHEET 1 BE 2 PHE B 216 ASP B 218 0 SHEET 2 BE 2 LYS B 223 ILE B 224 -1 O LYS B 223 N GLU B 217 LINK O4 AGLC A1519 C1 BGC C 2 1555 1555 1.42 LINK O4 BBGC C 1 C1 BGC C 2 1555 1555 1.46 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.43 LINK O6 BGC C 2 C1 XYS C 7 1555 1555 1.41 LINK O4 BGC C 3 C1 BGC C 4 1555 1555 1.42 LINK O6 BGC C 3 C1 XYS C 6 1555 1555 1.42 LINK O6 BGC C 4 C1 XYS C 5 1555 1555 1.43 LINK O4 GLO D 1 C1 BGC D 2 1555 1555 1.50 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.44 LINK O6 BGC D 2 C1 XYS D 7 1555 1555 1.40 LINK O4 BGC D 3 C1 BGC D 4 1555 1555 1.43 LINK O6 BGC D 3 C1 XYS D 6 1555 1555 1.43 LINK O6 BGC D 4 C1 XYS D 5 1555 1555 1.44 CISPEP 1 ASP A 374 PRO A 375 0 -8.88 CISPEP 2 ASP B 374 PRO B 375 0 -7.60 CRYST1 46.830 147.240 84.140 90.00 92.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021354 0.000000 0.001059 0.00000 SCALE2 0.000000 0.006792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011900 0.00000