HEADER RNA 26-FEB-13 3ZP8 TITLE HIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAMMERHEAD RIBOZYME, ENZYME STRAND; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HAMMERHEAD RIBOZYME, SUBSTRATE STRAND; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS RNA, CATALYTIC RNA EXPDTA X-RAY DIFFRACTION AUTHOR M.ANDERSON,E.SCHULTZ,M.MARTICK,W.G.SCOTT REVDAT 4 20-DEC-23 3ZP8 1 REMARK LINK REVDAT 3 30-OCT-13 3ZP8 1 JRNL REVDAT 2 05-JUN-13 3ZP8 1 JRNL REVDAT 1 06-MAR-13 3ZP8 0 SPRSDE 06-MAR-13 3ZP8 3ZD3 JRNL AUTH M.ANDERSON,E.SCHULTZ,M.MARTICK,W.G.SCOTT JRNL TITL ACTIVE-SITE MONOVALENT CATIONS REVEALED IN A 1.55 A JRNL TITL 2 RESOLUTION HAMMERHEAD RIBOZYME STRUCTURE JRNL REF J.MOL.BIOL. V. 425 3790 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23711504 JRNL DOI 10.1016/J.JMB.2013.05.017 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 26446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.3919 - 3.7287 0.80 1477 112 0.1461 0.1605 REMARK 3 2 3.7287 - 2.9625 0.95 1700 143 0.1436 0.1814 REMARK 3 3 2.9625 - 2.5888 0.98 1759 146 0.2030 0.2173 REMARK 3 4 2.5888 - 2.3525 0.98 1751 149 0.2104 0.2446 REMARK 3 5 2.3525 - 2.1841 0.99 1780 146 0.2107 0.2485 REMARK 3 6 2.1841 - 2.0555 0.99 1774 147 0.2181 0.2458 REMARK 3 7 2.0555 - 1.9526 1.00 1752 149 0.2194 0.2543 REMARK 3 8 1.9526 - 1.8677 1.00 1797 136 0.2303 0.2484 REMARK 3 9 1.8677 - 1.7958 1.00 1775 162 0.2274 0.2735 REMARK 3 10 1.7958 - 1.7339 1.00 1774 132 0.2235 0.2737 REMARK 3 11 1.7339 - 1.6797 1.00 1780 148 0.2408 0.2830 REMARK 3 12 1.6797 - 1.6317 0.99 1753 149 0.2549 0.2913 REMARK 3 13 1.6317 - 1.5888 0.99 1775 150 0.2822 0.2974 REMARK 3 14 1.5888 - 1.5500 1.00 1797 133 0.3177 0.3515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.50 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1501 REMARK 3 ANGLE : 0.945 2333 REMARK 3 CHIRALITY : 0.041 311 REMARK 3 PLANARITY : 0.008 63 REMARK 3 DIHEDRAL : 14.414 746 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6630 18.3223 11.1163 REMARK 3 T TENSOR REMARK 3 T11: 0.4316 T22: 0.3429 REMARK 3 T33: 0.1839 T12: 0.0295 REMARK 3 T13: -0.0405 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 7.5589 L22: 8.1580 REMARK 3 L33: 3.5913 L12: 3.2265 REMARK 3 L13: -1.7323 L23: -5.2514 REMARK 3 S TENSOR REMARK 3 S11: 0.1547 S12: -0.4278 S13: 0.0789 REMARK 3 S21: -1.4030 S22: 0.2382 S23: 0.3418 REMARK 3 S31: 1.6202 S32: 0.0085 S33: -0.3883 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:14) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6063 7.0209 -8.8082 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.1949 REMARK 3 T33: 0.3160 T12: -0.0296 REMARK 3 T13: 0.0891 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.0089 L22: 6.8114 REMARK 3 L33: 5.6705 L12: 2.0092 REMARK 3 L13: 2.4531 L23: 7.0326 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.0161 S13: -0.4514 REMARK 3 S21: -0.6292 S22: 0.4407 S23: -0.9951 REMARK 3 S31: -0.3576 S32: 0.1767 S33: -0.4493 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 15:25) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9801 9.6844 -21.8264 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1978 REMARK 3 T33: 0.0899 T12: 0.0206 REMARK 3 T13: -0.0281 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 4.4450 L22: 4.5193 REMARK 3 L33: 7.2762 L12: -1.0146 REMARK 3 L13: -0.9060 L23: 2.9385 REMARK 3 S TENSOR REMARK 3 S11: -0.1646 S12: -0.2022 S13: -0.0671 REMARK 3 S21: -0.1533 S22: 0.2255 S23: -0.2982 REMARK 3 S31: -0.6796 S32: 0.0287 S33: -0.0285 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 26:30) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4070 15.4251 0.0882 REMARK 3 T TENSOR REMARK 3 T11: 0.4081 T22: 0.4264 REMARK 3 T33: 0.1951 T12: -0.0163 REMARK 3 T13: 0.0385 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 5.7837 L22: 8.0651 REMARK 3 L33: 6.3432 L12: -4.9699 REMARK 3 L13: -2.4970 L23: 1.8651 REMARK 3 S TENSOR REMARK 3 S11: -0.2844 S12: -1.1341 S13: -0.3173 REMARK 3 S21: 0.5802 S22: 0.2106 S23: 0.5471 REMARK 3 S31: -0.5765 S32: -0.6002 S33: 0.1978 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 31:34) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6025 13.3748 -9.7369 REMARK 3 T TENSOR REMARK 3 T11: 0.3637 T22: 0.5064 REMARK 3 T33: 0.2448 T12: 0.1140 REMARK 3 T13: -0.0612 T23: -0.0875 REMARK 3 L TENSOR REMARK 3 L11: 6.1488 L22: 7.5386 REMARK 3 L33: 9.5640 L12: -6.7011 REMARK 3 L13: 7.7084 L23: -8.0542 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.7192 S13: -0.5267 REMARK 3 S21: -0.0473 S22: 0.4405 S23: 0.5001 REMARK 3 S31: -0.3146 S32: -1.4248 S33: -0.4878 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 35:38) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7714 16.5656 -25.3414 REMARK 3 T TENSOR REMARK 3 T11: 0.5435 T22: 0.4186 REMARK 3 T33: 0.1993 T12: 0.1768 REMARK 3 T13: -0.0951 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.8332 L22: 4.4477 REMARK 3 L33: 0.1878 L12: -0.4596 REMARK 3 L13: 0.4354 L23: -0.8280 REMARK 3 S TENSOR REMARK 3 S11: -0.2122 S12: 0.2495 S13: 0.4594 REMARK 3 S21: -0.3513 S22: 0.0654 S23: -0.2216 REMARK 3 S31: -1.5225 S32: -1.2683 S33: 0.1746 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 39:43) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7784 6.9324 -32.8599 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.3301 REMARK 3 T33: 0.1159 T12: -0.0074 REMARK 3 T13: -0.0249 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 8.7637 L22: 7.4948 REMARK 3 L33: 1.5402 L12: -4.4742 REMARK 3 L13: -1.6441 L23: -1.3461 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: 0.3643 S13: -0.5882 REMARK 3 S21: -0.2934 S22: 0.2116 S23: 0.3757 REMARK 3 S31: 0.0351 S32: 0.3856 S33: -0.2282 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2815 12.1098 -25.3204 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.3159 REMARK 3 T33: 0.1371 T12: 0.0268 REMARK 3 T13: -0.0307 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 7.7436 L22: 2.4696 REMARK 3 L33: 2.3634 L12: -4.3415 REMARK 3 L13: 4.0819 L23: -2.0813 REMARK 3 S TENSOR REMARK 3 S11: -0.2629 S12: -0.4164 S13: 0.2741 REMARK 3 S21: 0.1868 S22: 0.1230 S23: -0.0495 REMARK 3 S31: -0.0201 S32: 0.1051 S33: 0.1944 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 8:15) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0072 2.2096 -3.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.3589 T22: 0.1956 REMARK 3 T33: 0.2573 T12: 0.0152 REMARK 3 T13: -0.0500 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 4.2656 L22: 4.4298 REMARK 3 L33: 7.4533 L12: 2.3703 REMARK 3 L13: 3.4947 L23: 4.0494 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.3701 S13: -0.0336 REMARK 3 S21: 0.7931 S22: -0.0481 S23: -0.5409 REMARK 3 S31: -0.2592 S32: -0.0024 S33: -0.1800 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 16:20) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3774 21.7737 9.2951 REMARK 3 T TENSOR REMARK 3 T11: 0.4122 T22: 0.2880 REMARK 3 T33: 0.8703 T12: 0.0642 REMARK 3 T13: 0.1777 T23: 0.1484 REMARK 3 L TENSOR REMARK 3 L11: 8.1564 L22: 7.3912 REMARK 3 L33: 8.8442 L12: -3.1591 REMARK 3 L13: -3.8393 L23: 7.9437 REMARK 3 S TENSOR REMARK 3 S11: 0.5600 S12: -0.2079 S13: -0.3825 REMARK 3 S21: -0.2672 S22: 0.2078 S23: -2.8923 REMARK 3 S31: 0.4635 S32: 0.2495 S33: -0.5810 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1290055984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26462 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2GOZ REMARK 200 REMARK 200 REMARK: SAME CELL AND SPACEGROUP AS 2GOZ REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M SODIUM MALONATE, PH 7.5 AND 1 MM REMARK 280 MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 25.41000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 25.41000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A1047 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2026 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2040 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2125 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2012 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2028 O HOH A 2128 1.86 REMARK 500 O2' C B 14 O HOH B 2058 1.88 REMARK 500 O HOH A 2043 O HOH A 2049 1.95 REMARK 500 O3' C A 43 O HOH A 2204 1.96 REMARK 500 O HOH A 2209 O HOH B 2016 2.04 REMARK 500 O HOH A 2151 O HOH B 2055 2.07 REMARK 500 O HOH A 2022 O HOH A 2106 2.08 REMARK 500 O HOH B 2009 O HOH B 2042 2.09 REMARK 500 O HOH A 2188 O HOH B 2023 2.11 REMARK 500 O HOH A 2023 O HOH A 2106 2.11 REMARK 500 O HOH A 2161 O HOH A 2168 2.11 REMARK 500 O HOH B 2019 O HOH B 2023 2.14 REMARK 500 O HOH A 2030 O HOH A 2031 2.16 REMARK 500 O HOH A 2114 O HOH A 2124 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 20 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 6.25 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE (OMC): OMC OR 2'-OMEC REMARK 600 AT POSITION 6 OF CHAIN B REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1055 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 5 O6 REMARK 620 2 HOH A2035 O 82.6 REMARK 620 3 HOH A2038 O 67.5 109.2 REMARK 620 4 HOH A2047 O 75.8 98.9 129.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1049 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 9 O2 REMARK 620 2 HOH A2067 O 99.4 REMARK 620 3 HOH A2068 O 88.8 61.8 REMARK 620 4 HOH A2069 O 90.0 115.9 177.2 REMARK 620 5 HOH A2153 O 103.8 146.4 94.5 88.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1045 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 16 O4 REMARK 620 2 U A 19 O2 76.9 REMARK 620 3 U A 19 O2' 126.1 85.2 REMARK 620 4 U A 19 OP2 80.3 136.0 78.6 REMARK 620 5 HOH A2099 O 81.9 68.9 137.0 143.3 REMARK 620 6 HOH A2113 O 157.3 100.3 75.4 114.3 76.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1052 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 16 O4 REMARK 620 2 U A 19 O2 78.2 REMARK 620 3 HOH A2097 O 95.5 169.1 REMARK 620 4 HOH A2098 O 99.8 90.2 99.7 REMARK 620 5 HOH A2099 O 93.3 77.8 93.9 160.1 REMARK 620 6 HOH A2210 O 171.6 95.4 91.7 74.6 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1046 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 18 O3' REMARK 620 2 A A 18 O2' 59.7 REMARK 620 3 HOH A2108 O 82.1 130.4 REMARK 620 4 HOH A2184 O 98.8 88.5 130.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1048 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 18 OP1 REMARK 620 2 HOH A2099 O 115.1 REMARK 620 3 HOH A2107 O 50.0 68.8 REMARK 620 4 HOH A2113 O 169.8 69.2 137.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1047 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 19 O4 REMARK 620 2 U A 19 O4 84.3 REMARK 620 3 HOH A2091 O 91.7 169.2 REMARK 620 4 HOH A2091 O 169.2 91.7 93.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1054 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 20 N7 REMARK 620 2 HOH A2211 O 106.8 REMARK 620 3 HOH A2212 O 123.5 97.4 REMARK 620 4 HOH A2213 O 149.5 89.4 78.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1044 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 21 OP2 REMARK 620 2 G A 22 N7 109.4 REMARK 620 3 HOH A2120 O 83.0 97.6 REMARK 620 4 HOH A2121 O 77.7 172.0 79.3 REMARK 620 5 HOH A2122 O 101.5 88.2 171.0 94.1 REMARK 620 6 HOH A2130 O 158.5 91.7 90.3 81.0 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1050 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 27 N7 REMARK 620 2 HOH A2056 O 96.8 REMARK 620 3 HOH A2137 O 100.4 160.2 REMARK 620 4 HOH A2139 O 89.0 75.7 94.6 REMARK 620 5 HOH A2142 O 92.1 97.6 91.6 173.3 REMARK 620 6 HOH A2208 O 173.8 80.1 81.9 85.0 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1053 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 36 O6 REMARK 620 2 HOH A2167 O 119.6 REMARK 620 3 HOH A2172 O 95.1 80.6 REMARK 620 4 HOH A2175 O 96.7 94.7 168.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1051 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 38 OP2 REMARK 620 2 HOH A2176 O 96.9 REMARK 620 3 HOH A2178 O 106.2 87.4 REMARK 620 4 HOH A2181 O 95.5 167.3 92.1 REMARK 620 5 HOH A2182 O 88.2 88.0 165.3 89.4 REMARK 620 6 HOH A2209 O 171.5 83.6 82.3 83.7 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1021 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2080 O REMARK 620 2 G B 9 O6 86.3 REMARK 620 3 G B 10 O6 117.1 87.9 REMARK 620 4 HOH B2037 O 121.3 89.1 121.2 REMARK 620 5 HOH B2041 O 87.5 166.2 84.0 104.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1023 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2154 O REMARK 620 2 G B 10 N7 173.6 REMARK 620 3 HOH B2035 O 81.0 100.2 REMARK 620 4 HOH B2037 O 84.1 89.6 90.9 REMARK 620 5 HOH B2039 O 91.3 95.2 83.2 173.0 REMARK 620 6 HOH B2040 O 87.3 92.5 165.0 97.2 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1022 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2192 O REMARK 620 2 HOH A2207 O 65.2 REMARK 620 3 G B 1 O6 136.1 77.8 REMARK 620 4 G B 2 O6 90.8 117.7 86.0 REMARK 620 5 HOH B2003 O 133.1 146.3 90.7 92.6 REMARK 620 6 HOH B2004 O 121.9 94.2 81.9 142.6 52.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1024 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 3 OP2 REMARK 620 2 HOH B2011 O 108.5 REMARK 620 3 HOH B2013 O 62.8 171.1 REMARK 620 4 HOH B2019 O 113.5 127.2 58.7 REMARK 620 5 HOH B2076 O 92.7 129.4 55.6 79.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1044 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1045 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1046 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1047 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1048 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1021 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1022 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1049 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1050 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1023 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1051 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1052 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1053 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1054 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1024 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1055 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZD4 RELATED DB: PDB REMARK 900 FULL-LENGTH HAMMERHEAD RIBOZYME WITH G12A SUBSTITUTION AT THE REMARK 900 GENERAL BASE POSITION REMARK 900 RELATED ID: 3ZD5 RELATED DB: PDB REMARK 900 THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE REMARK 900 HAMMERHEAD RIBOZYME DBREF 3ZP8 A 1 43 PDB 3ZP8 3ZP8 1 43 DBREF 3ZP8 B 1 20 PDB 3ZP8 3ZP8 1 20 SEQRES 1 A 43 GDP G A U G U A C U A C C A SEQRES 2 A 43 G C U G A U G A G U C C C SEQRES 3 A 43 A A A U A G G A C G A A A SEQRES 4 A 43 C G C C SEQRES 1 B 20 G G C G U OMC C U G G U A U SEQRES 2 B 20 C C A A U C DC MODRES 3ZP8 GDP A 1 G GUANOSINE-5'-DIPHOSPHATE MODRES 3ZP8 OMC B 6 C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HET GDP A 1 28 HET OMC B 6 21 HET NA A1044 1 HET NA A1045 1 HET NA A1046 1 HET NA A1047 1 HET NA A1048 1 HET NA A1049 1 HET NA A1050 1 HET NA A1051 1 HET NA A1052 1 HET NA A1053 1 HET NA A1054 1 HET NA A1055 1 HET NA B1021 1 HET NA B1022 1 HET NA B1023 1 HET NA B1024 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM NA SODIUM ION FORMUL 1 GDP C10 H15 N5 O11 P2 FORMUL 2 OMC C10 H16 N3 O8 P FORMUL 3 NA 16(NA 1+) FORMUL 19 HOH *289(H2 O) LINK O3' GDP A 1 P G A 2 1555 1555 1.60 LINK O3' U B 5 P OMC B 6 1555 1555 1.60 LINK O3' OMC B 6 P C B 7 1555 1555 1.59 LINK O6 G A 5 NA NA A1055 1555 1555 2.88 LINK O2 U A 9 NA NA A1049 1555 1555 2.45 LINK O4 U A 16 NA NA A1045 2454 1555 2.46 LINK O4 U A 16 NA NA A1052 1555 1555 2.43 LINK O3' A A 18 NA NA A1046 1555 1555 2.85 LINK O2' A A 18 NA NA A1046 1555 1555 2.70 LINK OP1 A A 18 NA NA A1048 1555 1555 2.78 LINK O2 U A 19 NA NA A1045 1555 1555 2.49 LINK O2' U A 19 NA NA A1045 1555 1555 2.34 LINK OP2 U A 19 NA NA A1045 2454 1555 2.49 LINK O4 U A 19 NA NA A1047 1555 1555 2.46 LINK O4 U A 19 NA NA A1047 2454 1555 2.46 LINK O2 U A 19 NA NA A1052 2454 1555 2.46 LINK N7 G A 20 NA NA A1054 1555 1555 2.64 LINK OP2 A A 21 NA NA A1044 1555 1555 2.36 LINK N7 G A 22 NA NA A1044 1555 1555 2.56 LINK N7 A A 27 NA NA A1050 1555 1555 2.54 LINK O6 G A 36 NA NA A1053 1555 1555 2.37 LINK OP2 A A 38 NA NA A1051 1555 1555 2.26 LINK NA NA A1044 O HOH A2120 1555 1555 2.57 LINK NA NA A1044 O HOH A2121 1555 1555 2.63 LINK NA NA A1044 O HOH A2122 1555 1555 2.40 LINK NA NA A1044 O HOH A2130 1555 1555 2.36 LINK NA NA A1045 O HOH A2099 1555 2454 2.88 LINK NA NA A1045 O HOH A2113 1555 1555 2.45 LINK NA NA A1046 O HOH A2108 1555 1555 2.35 LINK NA NA A1046 O HOH A2184 1555 1555 2.59 LINK NA NA A1047 O HOH A2091 1555 1555 2.33 LINK NA NA A1047 O HOH A2091 1555 2454 2.33 LINK NA NA A1048 O HOH A2099 1555 1555 2.88 LINK NA NA A1048 O HOH A2107 1555 1555 3.15 LINK NA NA A1048 O HOH A2113 1555 2454 2.96 LINK NA NA A1049 O HOH A2067 1555 1555 2.45 LINK NA NA A1049 O HOH A2068 1555 1555 2.29 LINK NA NA A1049 O HOH A2069 1555 1555 2.33 LINK NA NA A1049 O HOH A2153 1555 1555 2.55 LINK NA NA A1050 O HOH A2056 1555 1555 2.55 LINK NA NA A1050 O HOH A2137 1555 1555 2.37 LINK NA NA A1050 O HOH A2139 1555 1555 2.44 LINK NA NA A1050 O HOH A2142 1555 1555 2.36 LINK NA NA A1050 O HOH A2208 1555 1555 2.79 LINK NA NA A1051 O HOH A2176 1555 1555 2.19 LINK NA NA A1051 O HOH A2178 1555 1555 2.64 LINK NA NA A1051 O HOH A2181 1555 1555 2.35 LINK NA NA A1051 O HOH A2182 1555 1555 2.37 LINK NA NA A1051 O HOH A2209 1555 1555 2.64 LINK NA NA A1052 O HOH A2097 1555 1555 2.27 LINK NA NA A1052 O HOH A2098 1555 1555 2.26 LINK NA NA A1052 O HOH A2099 1555 1555 2.41 LINK NA NA A1052 O HOH A2210 1555 1555 2.69 LINK NA NA A1053 O HOH A2167 1555 1555 2.25 LINK NA NA A1053 O HOH A2172 1555 1555 2.63 LINK NA NA A1053 O HOH A2175 1555 1555 2.48 LINK NA NA A1054 O HOH A2211 1555 1555 2.25 LINK NA NA A1054 O HOH A2212 1555 1555 2.44 LINK NA NA A1054 O HOH A2213 1555 1555 2.79 LINK NA NA A1055 O HOH A2035 1555 1555 2.45 LINK NA NA A1055 O HOH A2038 1555 1555 2.40 LINK NA NA A1055 O HOH A2047 1555 1555 2.32 LINK O HOH A2080 NA NA B1021 1555 1555 2.19 LINK O HOH A2154 NA NA B1023 1555 1555 2.49 LINK O HOH A2192 NA NA B1022 1555 1555 2.47 LINK O HOH A2207 NA NA B1022 1555 1555 2.82 LINK O6 G B 1 NA NA B1022 1555 1555 2.77 LINK O6 G B 2 NA NA B1022 1555 1555 2.58 LINK OP2 C B 3 NA NA B1024 1555 1555 2.66 LINK O6 G B 9 NA NA B1021 1555 1555 2.54 LINK O6 G B 10 NA NA B1021 1555 1555 2.40 LINK N7 G B 10 NA NA B1023 1555 1555 2.53 LINK NA NA B1021 O HOH B2037 1555 1555 2.47 LINK NA NA B1021 O HOH B2041 1555 1555 2.30 LINK NA NA B1022 O HOH B2003 1555 1555 2.77 LINK NA NA B1022 O HOH B2004 1555 1555 2.73 LINK NA NA B1023 O HOH B2035 1555 1555 2.52 LINK NA NA B1023 O HOH B2037 1555 1555 2.56 LINK NA NA B1023 O HOH B2039 1555 1555 2.37 LINK NA NA B1023 O HOH B2040 1555 1555 2.40 LINK NA NA B1024 O HOH B2011 1555 1555 2.56 LINK NA NA B1024 O HOH B2013 1555 1555 2.56 LINK NA NA B1024 O HOH B2019 1555 1555 2.77 LINK NA NA B1024 O HOH B2076 1555 1555 3.00 SITE 1 AC1 6 A A 21 G A 22 HOH A2120 HOH A2121 SITE 2 AC1 6 HOH A2122 HOH A2130 SITE 1 AC2 6 U A 16 U A 19 NA A1048 NA A1052 SITE 2 AC2 6 HOH A2099 HOH A2113 SITE 1 AC3 3 A A 18 HOH A2108 HOH A2184 SITE 1 AC4 2 U A 19 HOH A2091 SITE 1 AC5 6 U A 16 A A 18 U A 19 NA A1045 SITE 2 AC5 6 HOH A2099 HOH A2113 SITE 1 AC6 6 HOH A2080 G B 9 G B 10 NA B1023 SITE 2 AC6 6 HOH B2037 HOH B2041 SITE 1 AC7 6 HOH A2192 HOH A2207 G B 1 G B 2 SITE 2 AC7 6 HOH B2003 HOH B2004 SITE 1 AC8 5 U A 9 HOH A2067 HOH A2068 HOH A2069 SITE 2 AC8 5 HOH A2153 SITE 1 AC9 6 A A 27 HOH A2056 HOH A2137 HOH A2139 SITE 2 AC9 6 HOH A2142 HOH A2208 SITE 1 BC1 7 HOH A2154 G B 10 NA B1021 HOH B2035 SITE 2 BC1 7 HOH B2037 HOH B2039 HOH B2040 SITE 1 BC2 6 A A 38 HOH A2176 HOH A2178 HOH A2181 SITE 2 BC2 6 HOH A2182 HOH A2209 SITE 1 BC3 7 U A 16 U A 19 NA A1045 HOH A2097 SITE 2 BC3 7 HOH A2098 HOH A2099 HOH A2210 SITE 1 BC4 5 G A 36 HOH A2167 HOH A2172 HOH A2175 SITE 2 BC4 5 OMC B 6 SITE 1 BC5 4 G A 20 HOH A2211 HOH A2212 HOH A2213 SITE 1 BC6 5 C B 3 HOH B2011 HOH B2013 HOH B2019 SITE 2 BC6 5 HOH B2076 SITE 1 BC7 4 G A 5 HOH A2035 HOH A2038 HOH A2047 CRYST1 50.820 68.530 58.900 90.00 112.35 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019677 0.000000 0.008090 0.00000 SCALE2 0.000000 0.014592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018357 0.00000 HETATM 1 PB GDP A 1 -6.132 8.674 14.959 1.00 81.29 P ANISOU 1 PB GDP A 1 12719 9262 8904 1570 101 1941 P HETATM 2 O1B GDP A 1 -7.112 7.562 15.272 1.00 83.23 O ANISOU 2 O1B GDP A 1 13214 9220 9188 1290 -214 2145 O HETATM 3 O2B GDP A 1 -5.337 8.990 16.206 1.00 73.98 O ANISOU 3 O2B GDP A 1 10967 9023 8118 1692 157 2269 O HETATM 4 O3B GDP A 1 -5.179 8.232 13.873 1.00 87.17 O ANISOU 4 O3B GDP A 1 14045 9349 9728 1984 572 1836 O HETATM 5 O3A GDP A 1 -6.923 9.994 14.468 1.00 54.61 O ANISOU 5 O3A GDP A 1 9307 6152 5292 1271 -102 1544 O HETATM 6 PA GDP A 1 -7.864 10.044 13.150 1.00 58.57 P ANISOU 6 PA GDP A 1 10544 6135 5576 999 -291 1243 P HETATM 7 O1A GDP A 1 -8.534 8.716 12.883 1.00 59.44 O ANISOU 7 O1A GDP A 1 11233 5672 5679 791 -491 1332 O HETATM 8 O2A GDP A 1 -7.116 10.580 11.951 1.00 51.23 O ANISOU 8 O2A GDP A 1 10016 4934 4515 1248 44 960 O HETATM 9 O5' GDP A 1 -8.947 11.161 13.558 1.00 48.30 O ANISOU 9 O5' GDP A 1 8728 5365 4259 606 -632 1174 O HETATM 10 C5' GDP A 1 -10.256 10.780 13.960 1.00 46.70 C ANISOU 10 C5' GDP A 1 8451 5186 4106 190 -1031 1332 C HETATM 11 C4' GDP A 1 -10.841 11.922 14.776 1.00 34.37 C ANISOU 11 C4' GDP A 1 6175 4250 2633 3 -1115 1333 C HETATM 12 O4' GDP A 1 -9.991 12.224 15.897 1.00 33.29 O ANISOU 12 O4' GDP A 1 5466 4652 2530 214 -867 1369 O HETATM 13 C3' GDP A 1 -10.954 13.211 13.978 1.00 32.14 C ANISOU 13 C3' GDP A 1 5827 4020 2366 -37 -1059 1074 C HETATM 14 O3' GDP A 1 -12.159 13.262 13.221 1.00 33.01 O ANISOU 14 O3' GDP A 1 6119 3860 2561 -400 -1361 1101 O HETATM 15 C2' GDP A 1 -10.930 14.234 15.092 1.00 34.60 C ANISOU 15 C2' GDP A 1 5358 4968 2822 -45 -898 1010 C HETATM 16 O2' GDP A 1 -12.185 14.242 15.772 1.00 29.96 O ANISOU 16 O2' GDP A 1 4457 4561 2367 -382 -1107 1185 O HETATM 17 C1' GDP A 1 -9.911 13.643 16.034 1.00 31.48 C ANISOU 17 C1' GDP A 1 4782 4831 2347 194 -719 1118 C HETATM 18 N9 GDP A 1 -8.576 14.101 15.601 1.00 29.87 N ANISOU 18 N9 GDP A 1 4596 4629 2123 549 -415 957 N HETATM 19 C8 GDP A 1 -7.587 13.337 15.102 1.00 31.80 C ANISOU 19 C8 GDP A 1 5214 4530 2337 877 -240 1048 C HETATM 20 N7 GDP A 1 -6.501 14.095 14.805 1.00 30.89 N ANISOU 20 N7 GDP A 1 4935 4535 2268 1158 50 917 N HETATM 21 C5 GDP A 1 -6.801 15.372 15.111 1.00 28.27 C ANISOU 21 C5 GDP A 1 4143 4611 1987 982 33 706 C HETATM 22 C6 GDP A 1 -6.102 16.670 15.049 1.00 26.48 C ANISOU 22 C6 GDP A 1 3531 4669 1863 1085 240 495 C HETATM 23 O6 GDP A 1 -4.925 16.754 14.621 1.00 27.12 O ANISOU 23 O6 GDP A 1 3643 4670 1991 1412 479 532 O HETATM 24 N1 GDP A 1 -6.780 17.741 15.483 1.00 24.69 N ANISOU 24 N1 GDP A 1 2903 4752 1727 818 196 286 N HETATM 25 C2 GDP A 1 -8.040 17.675 15.957 1.00 24.55 C ANISOU 25 C2 GDP A 1 2798 4808 1723 498 12 297 C HETATM 26 N2 GDP A 1 -8.651 18.817 16.364 1.00 27.48 N ANISOU 26 N2 GDP A 1 2748 5428 2265 282 90 82 N HETATM 27 N3 GDP A 1 -8.740 16.518 16.034 1.00 25.97 N ANISOU 27 N3 GDP A 1 3281 4780 1808 386 -214 533 N HETATM 28 C4 GDP A 1 -8.172 15.363 15.636 1.00 27.76 C ANISOU 28 C4 GDP A 1 3952 4674 1923 597 -236 724 C