HEADER BLOOD CLOTTING 09-JUN-11 3ZQK TITLE VON WILLEBRAND FACTOR A2 DOMAIN WITH CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: VON WILLEBRAND FACTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: A2 DOMAIN, RESIDUES 1478-1674; COMPND 5 SYNONYM: VWF, VON WILLEBRAND ANTIGEN 2, VON WILLEBRAND ANTIGEN II; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293-EBNA1-S KEYWDS BLOOD CLOTTING, ADAMTS-13, FORCE SENSOR, VON WILLEBRAND DISEASE, VWA KEYWDS 2 DOMAIN, HAEMOSTASIS EXPDTA X-RAY DIFFRACTION AUTHOR A.J.JAKOBI,E.G.HUIZINGA REVDAT 4 20-DEC-23 3ZQK 1 HETSYN REVDAT 3 29-JUL-20 3ZQK 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 05-SEP-12 3ZQK 1 REMARK REVDAT 1 27-JUL-11 3ZQK 0 JRNL AUTH A.J.JAKOBI,A.MASHAGHI,S.J.TANS,E.G.HUIZINGA JRNL TITL CALCIUM MODULATES FORCE SENSING BY THE VON WILLEBRAND FACTOR JRNL TITL 2 A2 DOMAIN. JRNL REF NAT.COMMUN. V. 2 385 2011 JRNL REFN ESSN 2041-1723 JRNL PMID 21750539 JRNL DOI 10.1038/NCOMMS1385 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 51446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3107 - 4.5310 0.98 2806 137 0.1692 0.1795 REMARK 3 2 4.5310 - 3.5985 0.98 2691 147 0.1270 0.1626 REMARK 3 3 3.5985 - 3.1442 0.97 2604 168 0.1398 0.1908 REMARK 3 4 3.1442 - 2.8570 0.97 2612 157 0.1445 0.1965 REMARK 3 5 2.8570 - 2.6524 0.97 2617 135 0.1497 0.1913 REMARK 3 6 2.6524 - 2.4961 0.97 2590 137 0.1448 0.2019 REMARK 3 7 2.4961 - 2.3711 0.97 2565 146 0.1498 0.2035 REMARK 3 8 2.3711 - 2.2679 0.95 2603 129 0.1412 0.1816 REMARK 3 9 2.2679 - 2.1807 0.95 2550 141 0.1445 0.2010 REMARK 3 10 2.1807 - 2.1054 0.96 2558 131 0.1379 0.1986 REMARK 3 11 2.1054 - 2.0396 0.94 2543 138 0.1447 0.2206 REMARK 3 12 2.0396 - 1.9813 0.96 2564 127 0.1466 0.1852 REMARK 3 13 1.9813 - 1.9292 0.93 2496 130 0.1484 0.1930 REMARK 3 14 1.9292 - 1.8821 0.96 2538 146 0.1516 0.1924 REMARK 3 15 1.8821 - 1.8393 0.93 2517 130 0.1543 0.2116 REMARK 3 16 1.8393 - 1.8002 0.94 2506 128 0.1665 0.2238 REMARK 3 17 1.8002 - 1.7642 0.95 2518 121 0.1856 0.2653 REMARK 3 18 1.7642 - 1.7309 0.92 2471 133 0.2005 0.2656 REMARK 3 19 1.7309 - 1.7000 0.95 2485 131 0.2115 0.2733 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 47.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78010 REMARK 3 B22 (A**2) : -0.15680 REMARK 3 B33 (A**2) : -1.62340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.82700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4691 REMARK 3 ANGLE : 1.396 6388 REMARK 3 CHIRALITY : 0.097 707 REMARK 3 PLANARITY : 0.007 864 REMARK 3 DIHEDRAL : 18.012 1799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1494:1674 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9488 0.9912 31.6711 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: -0.0030 REMARK 3 T33: 0.0133 T12: 0.0024 REMARK 3 T13: 0.0054 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2195 L22: 0.0786 REMARK 3 L33: 0.3467 L12: 0.0306 REMARK 3 L13: -0.0097 L23: 0.0277 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.0245 S13: 0.0399 REMARK 3 S21: 0.0419 S22: 0.0226 S23: 0.0525 REMARK 3 S31: -0.0161 S32: -0.0423 S33: -0.0010 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 1494:1671 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5694 -2.3821 -2.3158 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.0028 REMARK 3 T33: 0.0057 T12: 0.0035 REMARK 3 T13: -0.0021 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.2278 L22: 0.1572 REMARK 3 L33: 0.3609 L12: 0.1313 REMARK 3 L13: -0.0347 L23: -0.0866 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: -0.0160 S13: 0.0244 REMARK 3 S21: 0.0302 S22: 0.0193 S23: 0.0056 REMARK 3 S31: -0.0853 S32: -0.0023 S33: -0.0203 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C AND RESID 1494:1671 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7792 -13.3861 26.8696 REMARK 3 T TENSOR REMARK 3 T11: -0.0319 T22: 0.0247 REMARK 3 T33: 0.0057 T12: 0.0195 REMARK 3 T13: -0.0508 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.5372 L22: 0.2347 REMARK 3 L33: 0.5580 L12: 0.0910 REMARK 3 L13: 0.4035 L23: 0.1249 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: -0.0025 S13: 0.0202 REMARK 3 S21: 0.1717 S22: 0.0435 S23: 0.0071 REMARK 3 S31: 0.1069 S32: 0.1500 S33: -0.0499 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ZQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1290047373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GXB, PDB ENTRY 1ATZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 0.015 M HEPES PH 7.5, REMARK 280 0.02 M NACL, 0.001 M CACL2. RESERVOIR BUFFER: 0.1 M MMT (PH 4.0- REMARK 280 5.5), 0.15 M (NH4)2SO4, 18-23% (W/V) PEG2000 MME. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.01000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.01000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1476 REMARK 465 SER A 1477 REMARK 465 VAL A 1478 REMARK 465 GLY A 1479 REMARK 465 PRO A 1480 REMARK 465 GLY A 1481 REMARK 465 LEU A 1482 REMARK 465 LEU A 1483 REMARK 465 GLY A 1484 REMARK 465 VAL A 1485 REMARK 465 SER A 1486 REMARK 465 THR A 1487 REMARK 465 LEU A 1488 REMARK 465 GLY A 1489 REMARK 465 PRO A 1490 REMARK 465 LYS A 1491 REMARK 465 ARG A 1492 REMARK 465 ASN A 1493 REMARK 465 GLY B 1476 REMARK 465 SER B 1477 REMARK 465 VAL B 1478 REMARK 465 GLY B 1479 REMARK 465 PRO B 1480 REMARK 465 GLY B 1481 REMARK 465 LEU B 1482 REMARK 465 LEU B 1483 REMARK 465 GLY B 1484 REMARK 465 VAL B 1485 REMARK 465 SER B 1486 REMARK 465 THR B 1487 REMARK 465 LEU B 1488 REMARK 465 GLY B 1489 REMARK 465 PRO B 1490 REMARK 465 LYS B 1491 REMARK 465 ARG B 1492 REMARK 465 ASN B 1493 REMARK 465 GLY B 1672 REMARK 465 GLU B 1673 REMARK 465 GLY B 1674 REMARK 465 GLY C 1476 REMARK 465 SER C 1477 REMARK 465 VAL C 1478 REMARK 465 GLY C 1479 REMARK 465 PRO C 1480 REMARK 465 GLY C 1481 REMARK 465 LEU C 1482 REMARK 465 LEU C 1483 REMARK 465 GLY C 1484 REMARK 465 VAL C 1485 REMARK 465 SER C 1486 REMARK 465 THR C 1487 REMARK 465 LEU C 1488 REMARK 465 GLY C 1489 REMARK 465 PRO C 1490 REMARK 465 LYS C 1491 REMARK 465 ARG C 1492 REMARK 465 ASN C 1493 REMARK 465 GLY C 1672 REMARK 465 GLU C 1673 REMARK 465 GLY C 1674 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GOL A 2675 O HOH A 2188 2.12 REMARK 500 OE2 GLU B 1660 O HOH B 2146 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1534 -133.03 -124.49 REMARK 500 SER A1534 -114.95 -125.25 REMARK 500 SER A1543 -99.30 -150.90 REMARK 500 SER A1543 -83.33 -156.59 REMARK 500 HIS A1588 -58.44 -137.61 REMARK 500 CYS A1670 25.09 -143.40 REMARK 500 MET B1495 44.70 -104.30 REMARK 500 SER B1534 -121.71 -133.35 REMARK 500 SER B1534 -116.77 -134.45 REMARK 500 SER B1543 -91.04 -156.71 REMARK 500 SER B1543 -96.44 -151.31 REMARK 500 THR B1576 78.13 -116.43 REMARK 500 HIS B1588 -57.45 -139.16 REMARK 500 CYS B1670 77.11 51.60 REMARK 500 SER C1534 -120.75 -134.54 REMARK 500 SER C1534 -120.75 -137.43 REMARK 500 SER C1543 -91.79 -149.08 REMARK 500 SER C1543 -98.47 -155.26 REMARK 500 MET C1545 -166.14 -122.57 REMARK 500 THR C1576 71.44 -119.42 REMARK 500 HIS C1588 -55.26 -129.19 REMARK 500 ARG C1618 132.51 -35.78 REMARK 500 PRO C1620 154.94 -49.29 REMARK 500 CYS C1670 44.10 -144.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C2122 DISTANCE = 7.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A4675 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1498 OD2 REMARK 620 2 ASP A1596 OD2 66.0 REMARK 620 3 ASP A1596 OD1 89.3 44.0 REMARK 620 4 ARG A1597 O 85.3 116.3 83.0 REMARK 620 5 ALA A1600 O 100.6 145.4 168.9 92.8 REMARK 620 6 ASN A1602 OD1 97.8 58.9 89.4 171.7 94.1 REMARK 620 7 HOH A2116 O 171.6 114.6 86.2 87.1 83.3 89.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B4675 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1498 OD2 REMARK 620 2 ASP B1596 OD1 71.7 REMARK 620 3 ARG B1597 O 87.2 101.2 REMARK 620 4 ALA B1600 O 110.4 171.4 87.3 REMARK 620 5 ASN B1602 OD1 102.1 79.6 170.4 91.8 REMARK 620 6 HOH B2082 O 161.2 94.4 83.2 85.3 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C4675 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C1498 OD2 REMARK 620 2 ASP C1596 OD1 75.8 REMARK 620 3 ARG C1597 O 85.9 94.1 REMARK 620 4 ALA C1600 O 110.9 173.2 87.0 REMARK 620 5 ASN C1602 OD1 102.8 84.2 170.4 93.6 REMARK 620 6 HOH C2064 O 168.0 102.2 82.4 71.3 88.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FNS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE VON WILLEBRAND FACTOR (VWF) A1DOMAIN I546V REMARK 900 MUTANT IN COMPLEX WITH THE FUNCTION BLOCKINGFAB NMC4 REMARK 900 RELATED ID: 1UEX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VON WILLEBRAND FACTOR A1 DOMAINCOMPLEXED WITH REMARK 900 SNAKE VENOM BITISCETIN REMARK 900 RELATED ID: 1IJK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BIMOLECULAR COMPLEX OF THE VONWILLEBRAND REMARK 900 FACTOR A1 DOMAIN-BOTROCETIN REMARK 900 RELATED ID: 1AUQ RELATED DB: PDB REMARK 900 A1 DOMAIN OF VON WILLEBRAND FACTOR REMARK 900 RELATED ID: 1OAK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE VON WILLEBRAND FACTOR (VWF) A1 DOMAIN IN REMARK 900 COMPLEX WITH THE FUNCTION BLOCKING NMC- 4 FAB REMARK 900 RELATED ID: 2ADF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AND PARATOPE DETERMINATION OF 82D6A3, REMARK 900 ANANTITHROMBOTIC ANTIBODY DIRECTED AGAINST THE VONWILLEBRAND FACTOR REMARK 900 A3-DOMAIN REMARK 900 RELATED ID: 1SQ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF THE WILD-TYPE VONWILLEBRAND REMARK 900 FACTOR A1 DOMAIN AND GLYCOPROTEIN IB ALPHA AT2.6 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1ATZ RELATED DB: PDB REMARK 900 HUMAN VON WILLEBRAND FACTOR A3 DOMAIN REMARK 900 RELATED ID: 1FE8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE VON WILLEBRAND FACTOR A3 DOMAIN INCOMPLEX REMARK 900 WITH A FAB FRAGMENT OF IGG RU5 THAT INHIBITSCOLLAGEN BINDING REMARK 900 RELATED ID: 1AO3 RELATED DB: PDB REMARK 900 A3 DOMAIN OF VON WILLEBRAND FACTOR REMARK 900 RELATED ID: 1IJB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT (I546V) A1 DOMAIN OF THEVON REMARK 900 WILLEBRAND FACTOR REMARK 900 RELATED ID: 1U0N RELATED DB: PDB REMARK 900 THE TERNARY VON WILLEBRAND FACTOR A1-GLYCOPROTEIN IBALPHA- REMARK 900 BOTROCETIN COMPLEX REMARK 900 RELATED ID: 1M10 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF GLYCOPROTEIN IB ALPHAAND THE REMARK 900 VON WILLEBRAND FACTOR A1 DOMAIN DBREF 3ZQK A 1478 1674 UNP P04275 VWF_HUMAN 1478 1674 DBREF 3ZQK B 1478 1674 UNP P04275 VWF_HUMAN 1478 1674 DBREF 3ZQK C 1478 1674 UNP P04275 VWF_HUMAN 1478 1674 SEQADV 3ZQK GLY A 1476 UNP P04275 CLONING ARTIFACT SEQADV 3ZQK SER A 1477 UNP P04275 CLONING ARTIFACT SEQADV 3ZQK LEU A 1565 UNP P04275 VAL 1565 VARIANT SEQADV 3ZQK GLY B 1476 UNP P04275 CLONING ARTIFACT SEQADV 3ZQK SER B 1477 UNP P04275 CLONING ARTIFACT SEQADV 3ZQK LEU B 1565 UNP P04275 VAL 1565 VARIANT SEQADV 3ZQK GLY C 1476 UNP P04275 CLONING ARTIFACT SEQADV 3ZQK SER C 1477 UNP P04275 CLONING ARTIFACT SEQADV 3ZQK LEU C 1565 UNP P04275 VAL 1565 VARIANT SEQRES 1 A 199 GLY SER VAL GLY PRO GLY LEU LEU GLY VAL SER THR LEU SEQRES 2 A 199 GLY PRO LYS ARG ASN SER MET VAL LEU ASP VAL ALA PHE SEQRES 3 A 199 VAL LEU GLU GLY SER ASP LYS ILE GLY GLU ALA ASP PHE SEQRES 4 A 199 ASN ARG SER LYS GLU PHE MET GLU GLU VAL ILE GLN ARG SEQRES 5 A 199 MET ASP VAL GLY GLN ASP SER ILE HIS VAL THR VAL LEU SEQRES 6 A 199 GLN TYR SER TYR MET VAL THR VAL GLU TYR PRO PHE SER SEQRES 7 A 199 GLU ALA GLN SER LYS GLY ASP ILE LEU GLN ARG LEU ARG SEQRES 8 A 199 GLU ILE ARG TYR GLN GLY GLY ASN ARG THR ASN THR GLY SEQRES 9 A 199 LEU ALA LEU ARG TYR LEU SER ASP HIS SER PHE LEU VAL SEQRES 10 A 199 SER GLN GLY ASP ARG GLU GLN ALA PRO ASN LEU VAL TYR SEQRES 11 A 199 MET VAL THR GLY ASN PRO ALA SER ASP GLU ILE LYS ARG SEQRES 12 A 199 LEU PRO GLY ASP ILE GLN VAL VAL PRO ILE GLY VAL GLY SEQRES 13 A 199 PRO ASN ALA ASN VAL GLN GLU LEU GLU ARG ILE GLY TRP SEQRES 14 A 199 PRO ASN ALA PRO ILE LEU ILE GLN ASP PHE GLU THR LEU SEQRES 15 A 199 PRO ARG GLU ALA PRO ASP LEU VAL LEU GLN ARG CYS CYS SEQRES 16 A 199 SER GLY GLU GLY SEQRES 1 B 199 GLY SER VAL GLY PRO GLY LEU LEU GLY VAL SER THR LEU SEQRES 2 B 199 GLY PRO LYS ARG ASN SER MET VAL LEU ASP VAL ALA PHE SEQRES 3 B 199 VAL LEU GLU GLY SER ASP LYS ILE GLY GLU ALA ASP PHE SEQRES 4 B 199 ASN ARG SER LYS GLU PHE MET GLU GLU VAL ILE GLN ARG SEQRES 5 B 199 MET ASP VAL GLY GLN ASP SER ILE HIS VAL THR VAL LEU SEQRES 6 B 199 GLN TYR SER TYR MET VAL THR VAL GLU TYR PRO PHE SER SEQRES 7 B 199 GLU ALA GLN SER LYS GLY ASP ILE LEU GLN ARG LEU ARG SEQRES 8 B 199 GLU ILE ARG TYR GLN GLY GLY ASN ARG THR ASN THR GLY SEQRES 9 B 199 LEU ALA LEU ARG TYR LEU SER ASP HIS SER PHE LEU VAL SEQRES 10 B 199 SER GLN GLY ASP ARG GLU GLN ALA PRO ASN LEU VAL TYR SEQRES 11 B 199 MET VAL THR GLY ASN PRO ALA SER ASP GLU ILE LYS ARG SEQRES 12 B 199 LEU PRO GLY ASP ILE GLN VAL VAL PRO ILE GLY VAL GLY SEQRES 13 B 199 PRO ASN ALA ASN VAL GLN GLU LEU GLU ARG ILE GLY TRP SEQRES 14 B 199 PRO ASN ALA PRO ILE LEU ILE GLN ASP PHE GLU THR LEU SEQRES 15 B 199 PRO ARG GLU ALA PRO ASP LEU VAL LEU GLN ARG CYS CYS SEQRES 16 B 199 SER GLY GLU GLY SEQRES 1 C 199 GLY SER VAL GLY PRO GLY LEU LEU GLY VAL SER THR LEU SEQRES 2 C 199 GLY PRO LYS ARG ASN SER MET VAL LEU ASP VAL ALA PHE SEQRES 3 C 199 VAL LEU GLU GLY SER ASP LYS ILE GLY GLU ALA ASP PHE SEQRES 4 C 199 ASN ARG SER LYS GLU PHE MET GLU GLU VAL ILE GLN ARG SEQRES 5 C 199 MET ASP VAL GLY GLN ASP SER ILE HIS VAL THR VAL LEU SEQRES 6 C 199 GLN TYR SER TYR MET VAL THR VAL GLU TYR PRO PHE SER SEQRES 7 C 199 GLU ALA GLN SER LYS GLY ASP ILE LEU GLN ARG LEU ARG SEQRES 8 C 199 GLU ILE ARG TYR GLN GLY GLY ASN ARG THR ASN THR GLY SEQRES 9 C 199 LEU ALA LEU ARG TYR LEU SER ASP HIS SER PHE LEU VAL SEQRES 10 C 199 SER GLN GLY ASP ARG GLU GLN ALA PRO ASN LEU VAL TYR SEQRES 11 C 199 MET VAL THR GLY ASN PRO ALA SER ASP GLU ILE LYS ARG SEQRES 12 C 199 LEU PRO GLY ASP ILE GLN VAL VAL PRO ILE GLY VAL GLY SEQRES 13 C 199 PRO ASN ALA ASN VAL GLN GLU LEU GLU ARG ILE GLY TRP SEQRES 14 C 199 PRO ASN ALA PRO ILE LEU ILE GLN ASP PHE GLU THR LEU SEQRES 15 C 199 PRO ARG GLU ALA PRO ASP LEU VAL LEU GLN ARG CYS CYS SEQRES 16 C 199 SER GLY GLU GLY MODRES 3ZQK ASN A 1515 ASN GLYCOSYLATION SITE MODRES 3ZQK ASN A 1574 ASN GLYCOSYLATION SITE MODRES 3ZQK ASN B 1515 ASN GLYCOSYLATION SITE MODRES 3ZQK ASN B 1574 ASN GLYCOSYLATION SITE MODRES 3ZQK ASN C 1515 ASN GLYCOSYLATION SITE MODRES 3ZQK ASN C 1574 ASN GLYCOSYLATION SITE HET GOL A2675 6 HET GOL A2676 6 HET CA A4675 1 HET NAG A4676 14 HET NAG A4677 14 HET CA B4675 1 HET NAG B4676 14 HET NAG B4677 28 HET CA C4675 1 HET NAG C4676 14 HET NAG C4677 14 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 CA 3(CA 2+) FORMUL 7 NAG 6(C8 H15 N O6) FORMUL 15 HOH *508(H2 O) HELIX 1 1 GLY A 1510 MET A 1528 1 19 HELIX 2 2 SER A 1557 ILE A 1568 1 12 HELIX 3 3 ASN A 1577 HIS A 1588 1 12 HELIX 4 4 LEU A 1591 GLY A 1595 5 5 HELIX 5 5 ASN A 1635 TRP A 1644 1 10 HELIX 6 6 THR A 1656 SER A 1671 1 16 HELIX 7 7 ILE B 1509 MET B 1528 1 20 HELIX 8 8 SER B 1557 ARG B 1566 1 10 HELIX 9 9 ASN B 1577 HIS B 1588 1 12 HELIX 10 10 LEU B 1591 GLY B 1595 5 5 HELIX 11 11 ASN B 1635 TRP B 1644 1 10 HELIX 12 12 THR B 1656 CYS B 1669 1 14 HELIX 13 13 ILE C 1509 MET C 1528 1 20 HELIX 14 14 SER C 1557 GLU C 1567 1 11 HELIX 15 15 ASN C 1577 HIS C 1588 1 12 HELIX 16 16 LEU C 1591 GLY C 1595 5 5 HELIX 17 17 ASN C 1635 TRP C 1644 1 10 HELIX 18 18 THR C 1656 CYS C 1670 1 15 SHEET 1 AA 6 VAL A1546 TYR A1550 0 SHEET 2 AA 6 HIS A1536 TYR A1542 -1 O VAL A1539 N GLU A1549 SHEET 3 AA 6 ASP A1498 GLU A1504 1 O VAL A1499 N THR A1538 SHEET 4 AA 6 ASN A1602 THR A1608 1 O LEU A1603 N ALA A1500 SHEET 5 AA 6 ILE A1623 VAL A1630 1 O GLN A1624 N VAL A1604 SHEET 6 AA 6 ILE A1649 ILE A1651 1 O ILE A1649 N GLY A1629 SHEET 1 BA 6 VAL B1546 TYR B1550 0 SHEET 2 BA 6 ILE B1535 TYR B1542 -1 O VAL B1539 N GLU B1549 SHEET 3 BA 6 LEU B1497 GLU B1504 1 O LEU B1497 N HIS B1536 SHEET 4 BA 6 ASN B1602 THR B1608 1 O LEU B1603 N ALA B1500 SHEET 5 BA 6 ILE B1623 VAL B1630 1 O GLN B1624 N VAL B1604 SHEET 6 BA 6 ILE B1649 ILE B1651 1 O ILE B1649 N GLY B1629 SHEET 1 CA 6 VAL C1546 TYR C1550 0 SHEET 2 CA 6 ILE C1535 TYR C1542 -1 O VAL C1539 N GLU C1549 SHEET 3 CA 6 LEU C1497 GLU C1504 1 O LEU C1497 N HIS C1536 SHEET 4 CA 6 ASN C1602 THR C1608 1 O LEU C1603 N ALA C1500 SHEET 5 CA 6 ILE C1623 VAL C1630 1 O GLN C1624 N VAL C1604 SHEET 6 CA 6 ILE C1649 ILE C1651 1 O ILE C1649 N GLY C1629 SSBOND 1 CYS A 1669 CYS A 1670 1555 1555 2.08 SSBOND 2 CYS B 1669 CYS B 1670 1555 1555 2.05 SSBOND 3 CYS C 1669 CYS C 1670 1555 1555 2.08 LINK ND2 ASN A1515 C1 NAG A4676 1555 1555 1.47 LINK ND2 ASN A1574 C1 NAG A4677 1555 1555 1.45 LINK ND2 ASN B1515 C1 NAG B4676 1555 1555 1.45 LINK ND2AASN B1574 C1 ANAG B4677 1555 1555 1.44 LINK ND2BASN B1574 C1 BNAG B4677 1555 1555 1.45 LINK ND2 ASN C1515 C1 NAG C4676 1555 1555 1.47 LINK ND2 ASN C1574 C1 NAG C4677 1555 1555 1.45 LINK OD2 ASP A1498 CA CA A4675 1555 1555 2.36 LINK OD2 ASP A1596 CA CA A4675 1555 1555 3.16 LINK OD1 ASP A1596 CA CA A4675 1555 1555 2.38 LINK O ARG A1597 CA CA A4675 1555 1555 2.37 LINK O ALA A1600 CA CA A4675 1555 1555 2.34 LINK OD1 ASN A1602 CA CA A4675 1555 1555 2.38 LINK O HOH A2116 CA CA A4675 1555 1555 2.48 LINK OD2 ASP B1498 CA CA B4675 1555 1555 2.39 LINK OD1 ASP B1596 CA CA B4675 1555 1555 2.35 LINK O ARG B1597 CA CA B4675 1555 1555 2.38 LINK O ALA B1600 CA CA B4675 1555 1555 2.36 LINK OD1 ASN B1602 CA CA B4675 1555 1555 2.40 LINK O HOH B2082 CA CA B4675 1555 1555 2.48 LINK OD2 ASP C1498 CA CA C4675 1555 1555 2.33 LINK OD1 ASP C1596 CA CA C4675 1555 1555 2.36 LINK O ARG C1597 CA CA C4675 1555 1555 2.37 LINK O ALA C1600 CA CA C4675 1555 1555 2.37 LINK OD1 ASN C1602 CA CA C4675 1555 1555 2.40 LINK O HOH C2064 CA CA C4675 1555 1555 2.46 CISPEP 1 GLY A 1631 PRO A 1632 0 5.48 CISPEP 2 TRP A 1644 PRO A 1645 0 7.85 CISPEP 3 TRP B 1644 PRO B 1645 0 6.18 CISPEP 4 TRP C 1644 PRO C 1645 0 4.92 CRYST1 156.020 35.540 88.460 90.00 96.34 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006409 0.000000 0.000712 0.00000 SCALE2 0.000000 0.028137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011374 0.00000