data_3ZRI # _entry.id 3ZRI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ZRI PDBE EBI-48697 WWPDB D_1290048697 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3ZRJ _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'COMPLEX OF CLPV N-DOMAIN WITH VIPB PEPTIDE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ZRI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-06-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lenherr, E.D.' 1 'Kopp, J.' 2 'Sinning, I.' 3 # _citation.id primary _citation.title 'Molecular Basis for the Unique Role of the Aaa+ Chaperone Clpv in Type Vi Protein Secretion.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 286 _citation.page_first 30010 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21733841 _citation.pdbx_database_id_DOI 10.1074/JBC.M111.253377 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pietrosiuk, A.' 1 ? primary 'Lenherr, E.D.' 2 ? primary 'Falk, S.' 3 ? primary 'Bonemann, G.' 4 ? primary 'Kopp, J.' 5 ? primary 'Zentgraf, H.' 6 ? primary 'Sinning, I.' 7 ? primary 'Mogk, A.' 8 ? # _cell.entry_id 3ZRI _cell.length_a 71.898 _cell.length_b 72.990 _cell.length_c 73.033 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ZRI _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CLPB PROTEIN' 19435.873 1 ? ? 'N-DOMAIN, RESIDUES 2-159' ? 2 water nat water 18.015 87 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name CLPV # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RGSHHHHHHTDPIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEV DQVKQAIASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENL KKHFA(MSE)ILSDSAETT ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHTDPIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVK QAIASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHF AMILSDSAETT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 THR n 1 12 ASP n 1 13 PRO n 1 14 ILE n 1 15 ARG n 1 16 ILE n 1 17 GLU n 1 18 LEU n 1 19 PRO n 1 20 THR n 1 21 LEU n 1 22 ILE n 1 23 ALA n 1 24 LYS n 1 25 LEU n 1 26 ASN n 1 27 ALA n 1 28 GLN n 1 29 SER n 1 30 LYS n 1 31 LEU n 1 32 ALA n 1 33 LEU n 1 34 GLU n 1 35 GLN n 1 36 ALA n 1 37 ALA n 1 38 SER n 1 39 LEU n 1 40 CYS n 1 41 ILE n 1 42 GLU n 1 43 ARG n 1 44 GLN n 1 45 HIS n 1 46 PRO n 1 47 GLU n 1 48 VAL n 1 49 THR n 1 50 LEU n 1 51 GLU n 1 52 HIS n 1 53 TYR n 1 54 LEU n 1 55 ASP n 1 56 VAL n 1 57 LEU n 1 58 LEU n 1 59 ASP n 1 60 ASN n 1 61 PRO n 1 62 LEU n 1 63 SER n 1 64 ASP n 1 65 VAL n 1 66 ARG n 1 67 LEU n 1 68 VAL n 1 69 LEU n 1 70 LYS n 1 71 GLN n 1 72 ALA n 1 73 GLY n 1 74 LEU n 1 75 GLU n 1 76 VAL n 1 77 ASP n 1 78 GLN n 1 79 VAL n 1 80 LYS n 1 81 GLN n 1 82 ALA n 1 83 ILE n 1 84 ALA n 1 85 SER n 1 86 THR n 1 87 TYR n 1 88 SER n 1 89 ARG n 1 90 GLU n 1 91 GLN n 1 92 VAL n 1 93 LEU n 1 94 ASP n 1 95 THR n 1 96 TYR n 1 97 PRO n 1 98 ALA n 1 99 PHE n 1 100 SER n 1 101 PRO n 1 102 LEU n 1 103 LEU n 1 104 VAL n 1 105 GLU n 1 106 LEU n 1 107 LEU n 1 108 GLN n 1 109 GLU n 1 110 ALA n 1 111 TRP n 1 112 LEU n 1 113 LEU n 1 114 SER n 1 115 SER n 1 116 THR n 1 117 GLU n 1 118 LEU n 1 119 GLU n 1 120 GLN n 1 121 ALA n 1 122 GLU n 1 123 LEU n 1 124 ARG n 1 125 SER n 1 126 GLY n 1 127 ALA n 1 128 ILE n 1 129 PHE n 1 130 LEU n 1 131 ALA n 1 132 ALA n 1 133 LEU n 1 134 THR n 1 135 ARG n 1 136 ALA n 1 137 ASP n 1 138 ARG n 1 139 TYR n 1 140 LEU n 1 141 SER n 1 142 PHE n 1 143 LYS n 1 144 LEU n 1 145 ILE n 1 146 SER n 1 147 LEU n 1 148 PHE n 1 149 GLU n 1 150 GLY n 1 151 ILE n 1 152 ASN n 1 153 ARG n 1 154 GLU n 1 155 ASN n 1 156 LEU n 1 157 LYS n 1 158 LYS n 1 159 HIS n 1 160 PHE n 1 161 ALA n 1 162 MSE n 1 163 ILE n 1 164 LEU n 1 165 SER n 1 166 ASP n 1 167 SER n 1 168 ALA n 1 169 GLU n 1 170 THR n 1 171 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain V52 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'VIBRIO CHOLERAE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 345076 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'XL-1 BLUE' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1EKV2_VIBCH _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession A1EKV2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ZRI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 14 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 171 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A1EKV2 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ZRI MSE A 1 ? UNP A1EKV2 ? ? 'expression tag' -11 1 1 3ZRI ARG A 2 ? UNP A1EKV2 ? ? 'expression tag' -10 2 1 3ZRI GLY A 3 ? UNP A1EKV2 ? ? 'expression tag' -9 3 1 3ZRI SER A 4 ? UNP A1EKV2 ? ? 'expression tag' -8 4 1 3ZRI HIS A 5 ? UNP A1EKV2 ? ? 'expression tag' -7 5 1 3ZRI HIS A 6 ? UNP A1EKV2 ? ? 'expression tag' -6 6 1 3ZRI HIS A 7 ? UNP A1EKV2 ? ? 'expression tag' -5 7 1 3ZRI HIS A 8 ? UNP A1EKV2 ? ? 'expression tag' -4 8 1 3ZRI HIS A 9 ? UNP A1EKV2 ? ? 'expression tag' -3 9 1 3ZRI HIS A 10 ? UNP A1EKV2 ? ? 'expression tag' -2 10 1 3ZRI THR A 11 ? UNP A1EKV2 ? ? 'expression tag' -1 11 1 3ZRI ASP A 12 ? UNP A1EKV2 ? ? 'expression tag' 0 12 1 3ZRI PRO A 13 ? UNP A1EKV2 ? ? 'expression tag' 1 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ZRI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.33 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2M NAACETATE PH 7.0, 20% (W/V) PEG 3350, 18C' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-09-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength 0.9791 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3ZRI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 36.00 _reflns.d_resolution_high 1.80 _reflns.number_obs 18149 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.85 _reflns_shell.percent_possible_all 95.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.234 _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy 2.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3ZRI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17241 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.95 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.191 _refine.ls_R_factor_R_free 0.218 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 908 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 23.866 _refine.aniso_B[1][1] -0.06 _refine.aniso_B[2][2] -0.37 _refine.aniso_B[3][3] 0.43 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.DUE TO LESS THAN 100% INCORPORATION OF SEMET, ONLY A FRACTION WAS MODELLED' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.125 _refine.pdbx_overall_ESU_R_Free 0.116 _refine.overall_SU_ML 0.079 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.610 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1325 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 87 _refine_hist.number_atoms_total 1412 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 35.95 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.024 0.021 ? 1400 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.879 1.974 ? 1913 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.414 5.000 ? 181 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42.913 24.559 ? 68 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.807 15.000 ? 256 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.336 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.142 0.200 ? 227 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.021 ? 1052 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.379 1.500 ? 856 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.249 2.000 ? 1390 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.403 3.000 ? 544 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.314 4.500 ? 515 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.85 _refine_ls_shell.number_reflns_R_work 1244 _refine_ls_shell.R_factor_R_work 0.272 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.314 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 3ZRI _struct.title 'N-domain of ClpV from Vibrio cholerae' _struct.pdbx_descriptor 'CLPB PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ZRI _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text 'CHAPERONE, HSP100 PROTEINS, AAA+ PROTEINS, T6SS, SECRETION, VIRULENCE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 17 ? LEU A 25 ? GLU A 5 LEU A 13 1 ? 9 HELX_P HELX_P2 2 ASN A 26 ? GLN A 44 ? ASN A 14 GLN A 32 1 ? 19 HELX_P HELX_P3 3 THR A 49 ? LEU A 58 ? THR A 37 LEU A 46 1 ? 10 HELX_P HELX_P4 4 SER A 63 ? ALA A 72 ? SER A 51 ALA A 60 1 ? 10 HELX_P HELX_P5 5 GLU A 75 ? TYR A 87 ? GLU A 63 TYR A 75 1 ? 13 HELX_P HELX_P6 6 SER A 100 ? THR A 116 ? SER A 88 THR A 104 1 ? 17 HELX_P HELX_P7 7 ARG A 124 ? ARG A 135 ? ARG A 112 ARG A 123 1 ? 12 HELX_P HELX_P8 8 ARG A 135 ? LEU A 140 ? ARG A 123 LEU A 128 1 ? 6 HELX_P HELX_P9 9 SER A 141 ? PHE A 148 ? SER A 129 PHE A 136 1 ? 8 HELX_P HELX_P10 10 ASN A 152 ? HIS A 159 ? ASN A 140 HIS A 147 1 ? 8 HELX_P HELX_P11 11 HIS A 159 ? LEU A 164 ? HIS A 147 LEU A 152 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ALA 161 C ? ? ? 1_555 A MSE 162 N ? ? A ALA 149 A MSE 150 1_555 ? ? ? ? ? ? ? 1.315 ? covale2 covale both ? A MSE 162 C ? ? ? 1_555 A ILE 163 N ? ? A MSE 150 A ILE 151 1_555 ? ? ? ? ? ? ? 1.356 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 47 ? VAL A 48 ? GLU A 35 VAL A 36 AA 2 ALA A 98 ? PHE A 99 ? ALA A 86 PHE A 87 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 48 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 36 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ALA _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 98 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 86 # _database_PDB_matrix.entry_id 3ZRI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ZRI _atom_sites.fract_transf_matrix[1][1] 0.013909 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013701 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013692 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 ARG 2 -10 ? ? ? A . n A 1 3 GLY 3 -9 ? ? ? A . n A 1 4 SER 4 -8 ? ? ? A . n A 1 5 HIS 5 -7 -7 HIS HIS A . n A 1 6 HIS 6 -6 -6 HIS HIS A . n A 1 7 HIS 7 -5 -5 HIS HIS A . n A 1 8 HIS 8 -4 -4 HIS HIS A . n A 1 9 HIS 9 -3 -3 HIS HIS A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 THR 11 -1 -1 THR THR A . n A 1 12 ASP 12 0 0 ASP ASP A . n A 1 13 PRO 13 1 1 PRO PRO A . n A 1 14 ILE 14 2 2 ILE ILE A . n A 1 15 ARG 15 3 3 ARG ARG A . n A 1 16 ILE 16 4 4 ILE ILE A . n A 1 17 GLU 17 5 5 GLU GLU A . n A 1 18 LEU 18 6 6 LEU LEU A . n A 1 19 PRO 19 7 7 PRO PRO A . n A 1 20 THR 20 8 8 THR THR A . n A 1 21 LEU 21 9 9 LEU LEU A . n A 1 22 ILE 22 10 10 ILE ILE A . n A 1 23 ALA 23 11 11 ALA ALA A . n A 1 24 LYS 24 12 12 LYS LYS A . n A 1 25 LEU 25 13 13 LEU LEU A . n A 1 26 ASN 26 14 14 ASN ASN A . n A 1 27 ALA 27 15 15 ALA ALA A . n A 1 28 GLN 28 16 16 GLN GLN A . n A 1 29 SER 29 17 17 SER SER A . n A 1 30 LYS 30 18 18 LYS LYS A . n A 1 31 LEU 31 19 19 LEU LEU A . n A 1 32 ALA 32 20 20 ALA ALA A . n A 1 33 LEU 33 21 21 LEU LEU A . n A 1 34 GLU 34 22 22 GLU GLU A . n A 1 35 GLN 35 23 23 GLN GLN A . n A 1 36 ALA 36 24 24 ALA ALA A . n A 1 37 ALA 37 25 25 ALA ALA A . n A 1 38 SER 38 26 26 SER SER A . n A 1 39 LEU 39 27 27 LEU LEU A . n A 1 40 CYS 40 28 28 CYS CYS A . n A 1 41 ILE 41 29 29 ILE ILE A . n A 1 42 GLU 42 30 30 GLU GLU A . n A 1 43 ARG 43 31 31 ARG ARG A . n A 1 44 GLN 44 32 32 GLN GLN A . n A 1 45 HIS 45 33 33 HIS HIS A . n A 1 46 PRO 46 34 34 PRO PRO A . n A 1 47 GLU 47 35 35 GLU GLU A . n A 1 48 VAL 48 36 36 VAL VAL A . n A 1 49 THR 49 37 37 THR THR A . n A 1 50 LEU 50 38 38 LEU LEU A . n A 1 51 GLU 51 39 39 GLU GLU A . n A 1 52 HIS 52 40 40 HIS HIS A . n A 1 53 TYR 53 41 41 TYR TYR A . n A 1 54 LEU 54 42 42 LEU LEU A . n A 1 55 ASP 55 43 43 ASP ASP A . n A 1 56 VAL 56 44 44 VAL VAL A . n A 1 57 LEU 57 45 45 LEU LEU A . n A 1 58 LEU 58 46 46 LEU LEU A . n A 1 59 ASP 59 47 47 ASP ASP A . n A 1 60 ASN 60 48 48 ASN ASN A . n A 1 61 PRO 61 49 49 PRO PRO A . n A 1 62 LEU 62 50 50 LEU LEU A . n A 1 63 SER 63 51 51 SER SER A . n A 1 64 ASP 64 52 52 ASP ASP A . n A 1 65 VAL 65 53 53 VAL VAL A . n A 1 66 ARG 66 54 54 ARG ARG A . n A 1 67 LEU 67 55 55 LEU LEU A . n A 1 68 VAL 68 56 56 VAL VAL A . n A 1 69 LEU 69 57 57 LEU LEU A . n A 1 70 LYS 70 58 58 LYS LYS A . n A 1 71 GLN 71 59 59 GLN GLN A . n A 1 72 ALA 72 60 60 ALA ALA A . n A 1 73 GLY 73 61 61 GLY GLY A . n A 1 74 LEU 74 62 62 LEU LEU A . n A 1 75 GLU 75 63 63 GLU GLU A . n A 1 76 VAL 76 64 64 VAL VAL A . n A 1 77 ASP 77 65 65 ASP ASP A . n A 1 78 GLN 78 66 66 GLN GLN A . n A 1 79 VAL 79 67 67 VAL VAL A . n A 1 80 LYS 80 68 68 LYS LYS A . n A 1 81 GLN 81 69 69 GLN GLN A . n A 1 82 ALA 82 70 70 ALA ALA A . n A 1 83 ILE 83 71 71 ILE ILE A . n A 1 84 ALA 84 72 72 ALA ALA A . n A 1 85 SER 85 73 73 SER SER A . n A 1 86 THR 86 74 74 THR THR A . n A 1 87 TYR 87 75 75 TYR TYR A . n A 1 88 SER 88 76 76 SER SER A . n A 1 89 ARG 89 77 77 ARG ARG A . n A 1 90 GLU 90 78 78 GLU GLU A . n A 1 91 GLN 91 79 79 GLN GLN A . n A 1 92 VAL 92 80 80 VAL VAL A . n A 1 93 LEU 93 81 81 LEU LEU A . n A 1 94 ASP 94 82 82 ASP ASP A . n A 1 95 THR 95 83 83 THR THR A . n A 1 96 TYR 96 84 84 TYR TYR A . n A 1 97 PRO 97 85 85 PRO PRO A . n A 1 98 ALA 98 86 86 ALA ALA A . n A 1 99 PHE 99 87 87 PHE PHE A . n A 1 100 SER 100 88 88 SER SER A . n A 1 101 PRO 101 89 89 PRO PRO A . n A 1 102 LEU 102 90 90 LEU LEU A . n A 1 103 LEU 103 91 91 LEU LEU A . n A 1 104 VAL 104 92 92 VAL VAL A . n A 1 105 GLU 105 93 93 GLU GLU A . n A 1 106 LEU 106 94 94 LEU LEU A . n A 1 107 LEU 107 95 95 LEU LEU A . n A 1 108 GLN 108 96 96 GLN GLN A . n A 1 109 GLU 109 97 97 GLU GLU A . n A 1 110 ALA 110 98 98 ALA ALA A . n A 1 111 TRP 111 99 99 TRP TRP A . n A 1 112 LEU 112 100 100 LEU LEU A . n A 1 113 LEU 113 101 101 LEU LEU A . n A 1 114 SER 114 102 102 SER SER A . n A 1 115 SER 115 103 103 SER SER A . n A 1 116 THR 116 104 104 THR THR A . n A 1 117 GLU 117 105 105 GLU GLU A . n A 1 118 LEU 118 106 106 LEU LEU A . n A 1 119 GLU 119 107 107 GLU GLU A . n A 1 120 GLN 120 108 108 GLN GLN A . n A 1 121 ALA 121 109 109 ALA ALA A . n A 1 122 GLU 122 110 110 GLU GLU A . n A 1 123 LEU 123 111 111 LEU LEU A . n A 1 124 ARG 124 112 112 ARG ARG A . n A 1 125 SER 125 113 113 SER SER A . n A 1 126 GLY 126 114 114 GLY GLY A . n A 1 127 ALA 127 115 115 ALA ALA A . n A 1 128 ILE 128 116 116 ILE ILE A . n A 1 129 PHE 129 117 117 PHE PHE A . n A 1 130 LEU 130 118 118 LEU LEU A . n A 1 131 ALA 131 119 119 ALA ALA A . n A 1 132 ALA 132 120 120 ALA ALA A . n A 1 133 LEU 133 121 121 LEU LEU A . n A 1 134 THR 134 122 122 THR THR A . n A 1 135 ARG 135 123 123 ARG ARG A . n A 1 136 ALA 136 124 124 ALA ALA A . n A 1 137 ASP 137 125 125 ASP ASP A . n A 1 138 ARG 138 126 126 ARG ARG A . n A 1 139 TYR 139 127 127 TYR TYR A . n A 1 140 LEU 140 128 128 LEU LEU A . n A 1 141 SER 141 129 129 SER SER A . n A 1 142 PHE 142 130 130 PHE PHE A . n A 1 143 LYS 143 131 131 LYS LYS A . n A 1 144 LEU 144 132 132 LEU LEU A . n A 1 145 ILE 145 133 133 ILE ILE A . n A 1 146 SER 146 134 134 SER SER A . n A 1 147 LEU 147 135 135 LEU LEU A . n A 1 148 PHE 148 136 136 PHE PHE A . n A 1 149 GLU 149 137 137 GLU GLU A . n A 1 150 GLY 150 138 138 GLY GLY A . n A 1 151 ILE 151 139 139 ILE ILE A . n A 1 152 ASN 152 140 140 ASN ASN A . n A 1 153 ARG 153 141 141 ARG ARG A . n A 1 154 GLU 154 142 142 GLU GLU A . n A 1 155 ASN 155 143 143 ASN ASN A . n A 1 156 LEU 156 144 144 LEU LEU A . n A 1 157 LYS 157 145 145 LYS LYS A . n A 1 158 LYS 158 146 146 LYS LYS A . n A 1 159 HIS 159 147 147 HIS HIS A . n A 1 160 PHE 160 148 148 PHE PHE A . n A 1 161 ALA 161 149 149 ALA ALA A . n A 1 162 MSE 162 150 150 MSE MSE A . n A 1 163 ILE 163 151 151 ILE ILE A . n A 1 164 LEU 164 152 152 LEU LEU A . n A 1 165 SER 165 153 153 SER SER A . n A 1 166 ASP 166 154 154 ASP ASP A . n A 1 167 SER 167 155 155 SER SER A . n A 1 168 ALA 168 156 156 ALA ALA A . n A 1 169 GLU 169 157 157 GLU GLU A . n A 1 170 THR 170 158 158 THR THR A . n A 1 171 THR 171 159 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 2031 2031 HOH HOH A . B 2 HOH 32 2032 2032 HOH HOH A . B 2 HOH 33 2033 2033 HOH HOH A . B 2 HOH 34 2034 2034 HOH HOH A . B 2 HOH 35 2035 2035 HOH HOH A . B 2 HOH 36 2036 2036 HOH HOH A . B 2 HOH 37 2037 2037 HOH HOH A . B 2 HOH 38 2038 2038 HOH HOH A . B 2 HOH 39 2039 2039 HOH HOH A . B 2 HOH 40 2040 2040 HOH HOH A . B 2 HOH 41 2041 2041 HOH HOH A . B 2 HOH 42 2042 2042 HOH HOH A . B 2 HOH 43 2043 2043 HOH HOH A . B 2 HOH 44 2044 2044 HOH HOH A . B 2 HOH 45 2045 2045 HOH HOH A . B 2 HOH 46 2046 2046 HOH HOH A . B 2 HOH 47 2047 2047 HOH HOH A . B 2 HOH 48 2048 2048 HOH HOH A . B 2 HOH 49 2049 2049 HOH HOH A . B 2 HOH 50 2050 2050 HOH HOH A . B 2 HOH 51 2051 2051 HOH HOH A . B 2 HOH 52 2052 2052 HOH HOH A . B 2 HOH 53 2053 2053 HOH HOH A . B 2 HOH 54 2054 2054 HOH HOH A . B 2 HOH 55 2055 2055 HOH HOH A . B 2 HOH 56 2056 2056 HOH HOH A . B 2 HOH 57 2057 2057 HOH HOH A . B 2 HOH 58 2058 2058 HOH HOH A . B 2 HOH 59 2059 2059 HOH HOH A . B 2 HOH 60 2060 2060 HOH HOH A . B 2 HOH 61 2061 2061 HOH HOH A . B 2 HOH 62 2062 2062 HOH HOH A . B 2 HOH 63 2063 2063 HOH HOH A . B 2 HOH 64 2064 2064 HOH HOH A . B 2 HOH 65 2065 2065 HOH HOH A . B 2 HOH 66 2066 2066 HOH HOH A . B 2 HOH 67 2067 2067 HOH HOH A . B 2 HOH 68 2068 2068 HOH HOH A . B 2 HOH 69 2069 2069 HOH HOH A . B 2 HOH 70 2070 2070 HOH HOH A . B 2 HOH 71 2071 2071 HOH HOH A . B 2 HOH 72 2072 2072 HOH HOH A . B 2 HOH 73 2073 2073 HOH HOH A . B 2 HOH 74 2074 2074 HOH HOH A . B 2 HOH 75 2075 2075 HOH HOH A . B 2 HOH 76 2076 2076 HOH HOH A . B 2 HOH 77 2077 2077 HOH HOH A . B 2 HOH 78 2078 2078 HOH HOH A . B 2 HOH 79 2079 2079 HOH HOH A . B 2 HOH 80 2080 2080 HOH HOH A . B 2 HOH 81 2081 2081 HOH HOH A . B 2 HOH 82 2082 2082 HOH HOH A . B 2 HOH 83 2083 2083 HOH HOH A . B 2 HOH 84 2084 2084 HOH HOH A . B 2 HOH 85 2085 2085 HOH HOH A . B 2 HOH 86 2086 2086 HOH HOH A . B 2 HOH 87 2087 2087 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 162 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 150 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2920 ? 2 MORE -17.2 ? 2 'SSA (A^2)' 16270 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -72.9900000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2013-01-09 3 'Structure model' 1 2 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Experimental preparation' 6 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_PDB_rev 2 3 'Structure model' database_PDB_rev_record 3 3 'Structure model' exptl_crystal_grow 4 3 'Structure model' pdbx_database_proc 5 3 'Structure model' pdbx_database_status 6 3 'Structure model' pdbx_seq_map_depositor_info 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.temp' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 3 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.1340 -42.7890 -3.2709 0.0698 0.1150 0.0984 0.0030 -0.0264 -0.0207 2.4892 7.1572 6.2098 -2.8073 1.6290 -7.4763 -0.0680 0.0416 0.0847 0.0786 -0.1313 -0.3391 -0.1076 0.3111 0.1993 'X-RAY DIFFRACTION' 2 ? refined 5.3876 -19.2813 -19.3241 0.1553 0.0897 0.1719 0.0771 0.2092 0.1021 0.6177 2.2924 -0.5686 0.8854 1.2714 -1.0263 0.1333 0.1570 -0.0100 -0.2201 -0.1019 -0.3140 -0.0471 0.0493 -0.0314 'X-RAY DIFFRACTION' 3 ? refined -6.2987 -11.8370 -13.9582 0.1242 0.0503 0.1290 0.0452 -0.0039 0.0295 1.4060 0.2776 1.8143 0.5598 0.8531 0.1293 0.0953 -0.0370 0.1796 -0.1374 -0.0883 0.0146 -0.2748 -0.0737 -0.0070 'X-RAY DIFFRACTION' 4 ? refined 9.7533 -11.7025 -5.5114 0.0306 0.0727 0.1266 -0.0343 0.0095 -0.0021 4.4742 4.2455 0.9345 0.1009 0.6487 0.9137 0.0320 -0.1293 0.3063 -0.0969 0.1308 -0.0471 -0.0670 0.0228 -0.1627 'X-RAY DIFFRACTION' 5 ? refined -4.6024 -27.2909 -13.0668 0.0581 0.0727 0.0935 0.0123 0.0043 0.0055 0.6855 1.3935 0.8084 -0.7596 -0.0764 0.0083 0.0660 0.0091 -0.0021 -0.1205 -0.0607 -0.0453 0.0062 -0.0611 -0.0053 'X-RAY DIFFRACTION' 6 ? refined -14.5326 -22.9659 -16.9367 0.0450 0.1003 0.0979 0.0491 -0.0304 0.0034 1.2020 0.4095 1.9889 0.1567 0.8910 -0.0240 0.0887 0.0544 -0.0068 -0.0609 -0.0749 0.1289 0.0215 -0.2033 -0.0138 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A -7 ? ? A 5 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 6 ? ? A 29 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 30 ? ? A 75 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 76 ? ? A 89 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 90 ? ? A 130 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 131 ? ? A 158 ? ? ? ? # _software.name REFMAC _software.classification refinement _software.version 5.5.0109 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 28 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 28 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.602 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.210 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 123 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 123 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 123 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.63 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 4.33 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 104 ? ? -121.96 -81.70 2 1 ARG A 123 ? ? -113.85 51.49 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A ARG -10 ? A ARG 2 3 1 Y 1 A GLY -9 ? A GLY 3 4 1 Y 1 A SER -8 ? A SER 4 5 1 Y 1 A THR 159 ? A THR 171 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #