data_3A3A # _entry.id 3A3A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3A3A pdb_00003a3a 10.2210/pdb3a3a/pdb NDB NA0042 ? ? RCSB RCSB028757 ? ? WWPDB D_1000028757 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3A3A _pdbx_database_status.recvd_initial_deposition_date 2009-06-11 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Itoh, Y.' 1 'Chiba, S.' 2 'Sekine, S.I.' 3 'Yokoyama, S.' 4 # _citation.id primary _citation.title 'Crystal structure of human selenocysteine tRNA.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 37 _citation.page_first 6259 _citation.page_last 6268 _citation.year 2009 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19692584 _citation.pdbx_database_id_DOI 10.1093/nar/gkp648 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Itoh, Y.' 1 ? primary 'Chiba, S.' 2 ? primary 'Sekine, S.' 3 ? primary 'Yokoyama, S.' 4 ? # _cell.entry_id 3A3A _cell.length_a 78.949 _cell.length_b 51.573 _cell.length_c 81.365 _cell.angle_alpha 90.00 _cell.angle_beta 101.64 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3A3A _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'selenocysteine tRNA' _entity.formula_weight 28908.084 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUU UCGGGCGCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUU UCGGGCGCCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 A n 1 8 U n 1 9 G n 1 10 A n 1 11 U n 1 12 C n 1 13 C n 1 14 U n 1 15 C n 1 16 A n 1 17 G n 1 18 U n 1 19 G n 1 20 G n 1 21 U n 1 22 C n 1 23 U n 1 24 G n 1 25 G n 1 26 G n 1 27 G n 1 28 U n 1 29 G n 1 30 C n 1 31 A n 1 32 G n 1 33 G n 1 34 C n 1 35 U n 1 36 U n 1 37 C n 1 38 A n 1 39 A n 1 40 A n 1 41 C n 1 42 C n 1 43 U n 1 44 G n 1 45 U n 1 46 A n 1 47 G n 1 48 C n 1 49 U n 1 50 G n 1 51 U n 1 52 C n 1 53 U n 1 54 A n 1 55 G n 1 56 C n 1 57 G n 1 58 A n 1 59 C n 1 60 A n 1 61 G n 1 62 A n 1 63 G n 1 64 U n 1 65 G n 1 66 G n 1 67 U n 1 68 U n 1 69 C n 1 70 A n 1 71 A n 1 72 U n 1 73 U n 1 74 C n 1 75 C n 1 76 A n 1 77 C n 1 78 C n 1 79 U n 1 80 U n 1 81 U n 1 82 C n 1 83 G n 1 84 G n 1 85 G n 1 86 C n 1 87 G n 1 88 C n 1 89 C n 1 90 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 90 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'cell-free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'RNA was prepared by in vitro transcription with T7 RNA polymerase.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3A3A _struct_ref.pdbx_db_accession 3A3A _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3A3A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3A3A _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3A3A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.81 _exptl_crystal.density_percent_sol 56.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.1 _exptl_crystal_grow.pdbx_details '32% PEG 1500, 0.1M sodium acetate-HCl pH 4.1, 140mM lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-10-25 _diffrn_detector.details monochromator # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3A3A _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 3.10 _reflns.d_resolution_low 50 _reflns.number_all 6032 _reflns.number_obs 5833 _reflns.percent_possible_obs 96.7 _reflns.pdbx_Rmerge_I_obs 0.105 _reflns.pdbx_Rsym_value 0.105 _reflns.pdbx_netI_over_sigmaI 18.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.21 _reflns_shell.percent_possible_all 85.9 _reflns_shell.Rmerge_I_obs 0.390 _reflns_shell.pdbx_Rsym_value 0.390 _reflns_shell.meanI_over_sigI_obs 3.53 _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 608 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3A3A _refine.ls_number_reflns_obs 5781 _refine.ls_number_reflns_all 5965 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2615319.32 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.13 _refine.ls_d_res_high 3.10 _refine.ls_percent_reflns_obs 97.0 _refine.ls_R_factor_obs 0.254 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.254 _refine.ls_R_factor_R_free 0.314 _refine.ls_R_factor_R_free_error 0.020 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 258 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 115.0 _refine.aniso_B[1][1] 5.19 _refine.aniso_B[2][2] -16.71 _refine.aniso_B[3][3] 11.52 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -55.50 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.1 _refine.solvent_model_param_bsol 18.6706 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB ENTRY 2TRA, 6TNA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3A3A _refine_analyze.Luzzati_coordinate_error_obs 0.51 _refine_analyze.Luzzati_sigma_a_obs 0.72 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.74 _refine_analyze.Luzzati_sigma_a_free 0.29 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1829 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1829 _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 36.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.92 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 13.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.27 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.10 _refine_ls_shell.d_res_low 3.29 _refine_ls_shell.number_reflns_R_work 841 _refine_ls_shell.R_factor_R_work 0.422 _refine_ls_shell.percent_reflns_obs 89.8 _refine_ls_shell.R_factor_R_free 0.351 _refine_ls_shell.R_factor_R_free_error 0.055 _refine_ls_shell.percent_reflns_R_free 4.6 _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 649 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file dna-rna_rep.param _pdbx_xplor_file.topol_file dna-rna.top _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3A3A _struct.title 'Crystal structure of human selenocystine tRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3A3A _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'tRNA, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 86 N3 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 86 O2 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 86 N4 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 85 N1 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 85 O6 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 85 N2 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 84 N1 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 84 O6 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 84 N2 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 83 N1 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 83 O6 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 83 N2 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 7 N1 ? B ? 1_555 A U 80 N3 ? A A A 5 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N6 ? B ? 1_555 A U 80 O4 ? A A A 5 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? A ? 1_555 A U 81 O2 ? B A G 5 A U 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? A ? 1_555 A U 81 N3 ? B A G 5 A U 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A U 79 O4 ? ? A U 6 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog21 hydrog ? ? A U 8 O2 ? ? ? 1_555 A U 79 N3 ? ? A U 6 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 10 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 10 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 10 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 N3 ? ? ? 1_555 A G 25 O6 ? ? A U 12 A G 23 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog32 hydrog ? ? A U 14 O2 ? ? ? 1_555 A G 25 N1 ? ? A U 12 A G 23 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 23 N3 ? ? A A 14 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 23 O4 ? ? A A 14 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 22 N3 ? A A G 15 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 22 O2 ? A A G 15 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 22 N4 ? A A G 15 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 18 N3 ? ? ? 1_555 A U 72 O2 ? ? A U 16 A U 59 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog42 hydrog ? ? A U 18 O2 ? ? ? 1_555 A U 72 N3 ? ? A U 16 A U 59 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog43 hydrog ? ? A G 19 N1 ? ? ? 1_555 A U 68 O2 ? ? A G 18 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog44 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 26 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 26 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 29 N1 ? ? ? 1_555 A U 45 O2 ? ? A G 27 A U 43 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? A G 29 O6 ? ? ? 1_555 A U 45 N3 ? ? A G 27 A U 43 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 31 N1 ? ? ? 1_555 A U 43 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 31 N6 ? ? ? 1_555 A U 43 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 34 N3 ? ? ? 1_555 A C 37 N4 ? ? A C 32 A C 35 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog63 hydrog ? ? A G 47 N1 ? ? ? 1_555 A A 62 N1 ? ? A G 45 A A 48 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog64 hydrog ? ? A G 47 O6 ? ? ? 1_555 A A 62 N6 ? ? A G 45 A A 48 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog65 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 61 N1 ? L A C 46 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 61 O6 ? L A C 46 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 61 N2 ? L A C 46 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 52 N3 ? C ? 1_555 A G 57 N1 ? H A C 47 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 52 N4 ? C ? 1_555 A G 57 O6 ? H A C 47 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 52 O2 ? C ? 1_555 A G 57 N2 ? H A C 47 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 50 N1 ? A ? 1_555 A C 59 N3 ? J A G 47 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 50 N2 ? A ? 1_555 A C 59 O2 ? J A G 47 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 50 O6 ? A ? 1_555 A C 59 N4 ? J A G 47 A C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 60 N1 ? K A U 47 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 51 N3 ? B ? 1_555 A A 58 N1 ? I A U 47 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 49 O4 ? ? ? 1_555 A A 60 N6 ? K A U 47 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A U 51 O4 ? B ? 1_555 A A 58 N6 ? I A U 47 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 63 N1 ? ? ? 1_555 A C 77 N3 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 63 N2 ? ? ? 1_555 A C 77 O2 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 63 O6 ? ? ? 1_555 A C 77 N4 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 76 N1 ? ? A U 51 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 76 N6 ? ? A U 51 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 65 N1 ? ? ? 1_555 A C 75 N3 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 65 N2 ? ? ? 1_555 A C 75 O2 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 65 O6 ? ? ? 1_555 A C 75 N4 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 66 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 66 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 66 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A U 67 N3 ? ? ? 1_555 A A 71 N7 ? ? A U 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog90 hydrog ? ? A U 67 O2 ? ? ? 1_555 A A 71 N6 ? ? A U 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3A3A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3A3A _atom_sites.fract_transf_matrix[1][1] 0.012666 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002609 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019390 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012548 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 5 5 G G A A n A 1 7 A 7 5 5 A A A B n A 1 8 U 8 6 6 U U A . n A 1 9 G 9 7 7 G G A . n A 1 10 A 10 8 8 A A A . n A 1 11 U 11 9 9 U U A . n A 1 12 C 12 10 10 C C A . n A 1 13 C 13 11 11 C C A . n A 1 14 U 14 12 12 U U A . n A 1 15 C 15 13 13 C C A . n A 1 16 A 16 14 14 A A A . n A 1 17 G 17 15 15 G G A . n A 1 18 U 18 16 16 U U A . n A 1 19 G 19 18 18 G G A . n A 1 20 G 20 19 19 G G A . n A 1 21 U 21 20 20 U U A . n A 1 22 C 22 20 20 C C A A n A 1 23 U 23 21 21 U U A . n A 1 24 G 24 22 22 G G A . n A 1 25 G 25 23 23 G G A . n A 1 26 G 26 24 24 G G A . n A 1 27 G 27 25 25 G G A . n A 1 28 U 28 26 26 U U A . n A 1 29 G 29 27 27 G G A . n A 1 30 C 30 28 28 C C A . n A 1 31 A 31 29 29 A A A . n A 1 32 G 32 30 30 G G A . n A 1 33 G 33 31 31 G G A . n A 1 34 C 34 32 32 C C A . n A 1 35 U 35 33 33 U U A . n A 1 36 U 36 34 34 U U A . n A 1 37 C 37 35 35 C C A . n A 1 38 A 38 36 36 A A A . n A 1 39 A 39 37 37 A A A . n A 1 40 A 40 38 38 A A A . n A 1 41 C 41 39 39 C C A . n A 1 42 C 42 40 40 C C A . n A 1 43 U 43 41 41 U U A . n A 1 44 G 44 42 42 G G A . n A 1 45 U 45 43 43 U U A . n A 1 46 A 46 44 44 A A A . n A 1 47 G 47 45 45 G G A . n A 1 48 C 48 46 46 C C A . n A 1 49 U 49 47 47 U U A . n A 1 50 G 50 47 47 G G A A n A 1 51 U 51 47 47 U U A B n A 1 52 C 52 47 47 C C A C n A 1 53 U 53 47 47 U U A D n A 1 54 A 54 47 47 A A A E n A 1 55 G 55 47 47 G G A F n A 1 56 C 56 47 47 C C A G n A 1 57 G 57 47 47 G G A H n A 1 58 A 58 47 47 A A A I n A 1 59 C 59 47 47 C C A J n A 1 60 A 60 47 47 A A A K n A 1 61 G 61 47 47 G G A L n A 1 62 A 62 48 48 A A A . n A 1 63 G 63 50 50 G G A . n A 1 64 U 64 51 51 U U A . n A 1 65 G 65 52 52 G G A . n A 1 66 G 66 53 53 G G A . n A 1 67 U 67 54 54 U U A . n A 1 68 U 68 55 55 U U A . n A 1 69 C 69 56 56 C C A . n A 1 70 A 70 57 57 A A A . n A 1 71 A 71 58 58 A A A . n A 1 72 U 72 59 59 U U A . n A 1 73 U 73 60 60 U U A . n A 1 74 C 74 61 61 C C A . n A 1 75 C 75 62 62 C C A . n A 1 76 A 76 63 63 A A A . n A 1 77 C 77 64 64 C C A . n A 1 78 C 78 66 66 C C A . n A 1 79 U 79 67 67 U U A . n A 1 80 U 80 67 67 U U A A n A 1 81 U 81 67 67 U U A B n A 1 82 C 82 68 68 C C A . n A 1 83 G 83 69 69 G G A . n A 1 84 G 84 70 70 G G A . n A 1 85 G 85 71 71 G G A . n A 1 86 C 86 72 72 C C A . n A 1 87 G 87 73 ? ? ? A . n A 1 88 C 88 74 ? ? ? A . n A 1 89 C 89 75 ? ? ? A . n A 1 90 A 90 76 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-04-18 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Source and taxonomy' 6 3 'Structure model' 'Structure summary' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity 2 3 'Structure model' entity_src_gen 3 3 'Structure model' ndb_struct_conf_na 4 3 'Structure model' ndb_struct_na_base_pair 5 3 'Structure model' ndb_struct_na_base_pair_step 6 3 'Structure model' pdbx_entity_src_syn 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_ref 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' database_2 12 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity.src_method' 2 3 'Structure model' '_ndb_struct_conf_na.feature' 3 3 'Structure model' '_ndb_struct_na_base_pair.buckle' 4 3 'Structure model' '_ndb_struct_na_base_pair.hbond_type_12' 5 3 'Structure model' '_ndb_struct_na_base_pair.opening' 6 3 'Structure model' '_ndb_struct_na_base_pair.propeller' 7 3 'Structure model' '_ndb_struct_na_base_pair.shear' 8 3 'Structure model' '_ndb_struct_na_base_pair.stagger' 9 3 'Structure model' '_ndb_struct_na_base_pair_step.inclination' 10 3 'Structure model' '_ndb_struct_na_base_pair_step.tilt' 11 3 'Structure model' '_ndb_struct_na_base_pair_step.tip' 12 3 'Structure model' '_struct_ref.pdbx_align_begin' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.2 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 PHASER phasing . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.527 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.080 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 73 ? A G 87 2 1 Y 1 A C 74 ? A C 88 3 1 Y 1 A C 75 ? A C 89 4 1 Y 1 A A 76 ? A A 90 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3A3A 'double helix' 3A3A 'a-form double helix' 3A3A 'parallel strands' 3A3A 'hairpin loop' 3A3A 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 86 1_555 -0.007 -0.021 0.202 6.849 -4.282 -5.724 1 A_G1:C72_A A 1 ? A 72 ? 19 1 1 A C 2 1_555 A G 85 1_555 0.201 -0.085 0.092 13.619 -2.034 1.166 2 A_C2:G71_A A 2 ? A 71 ? 19 1 1 A C 3 1_555 A G 84 1_555 0.034 -0.035 0.030 5.258 -3.406 0.759 3 A_C3:G70_A A 3 ? A 70 ? 19 1 1 A C 4 1_555 A G 83 1_555 0.216 -0.066 -0.006 3.750 -4.538 2.094 4 A_C4:G69_A A 4 ? A 69 ? 19 1 1 A G 5 1_555 A C 82 1_555 -0.125 -0.117 0.120 -1.457 -1.413 0.092 5 A_G5:C68_A A 5 ? A 68 ? 19 1 1 A G 6 1_555 A U 81 1_555 -2.499 -0.397 -0.023 1.925 1.541 4.325 6 A_G5A:U67B_A A 5 A A 67 B 28 1 1 A A 7 1_555 A U 80 1_555 -0.063 -0.188 0.100 -1.415 -0.824 14.778 7 A_A5B:U67A_A A 5 B A 67 A 20 1 1 A U 8 1_555 A U 79 1_555 2.056 -1.716 0.287 -0.213 -10.855 13.418 8 A_U6:U67_A A 6 ? A 67 ? 16 1 1 A G 9 1_555 A C 78 1_555 -0.184 -0.049 0.069 -1.846 -7.195 -0.360 9 A_G7:C66_A A 7 ? A 66 ? 19 1 1 A G 63 1_555 A C 77 1_555 -0.204 -0.146 0.028 -15.714 -10.830 -0.761 10 A_G50:C64_A A 50 ? A 64 ? 19 1 1 A U 64 1_555 A A 76 1_555 -0.238 -0.153 0.245 -14.326 -13.684 6.991 11 A_U51:A63_A A 51 ? A 63 ? 20 1 1 A G 65 1_555 A C 75 1_555 -0.152 -0.238 0.143 -1.696 0.353 0.004 12 A_G52:C62_A A 52 ? A 62 ? 19 1 1 A G 66 1_555 A C 74 1_555 -0.116 -0.405 -0.076 -2.079 -13.675 0.410 13 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A U 67 1_555 A A 71 1_555 3.735 -1.921 -0.131 -9.324 -2.484 -103.781 14 A_U54:A58_A A 54 ? A 58 ? 24 4 1 A U 68 1_555 A G 19 1_555 0.596 -5.610 0.022 11.667 2.313 -99.594 15 A_U55:G18_A A 55 ? A 18 ? ? 6 1 A C 37 1_555 A C 34 1_555 -3.473 0.058 2.499 -10.837 62.131 -112.816 16 A_C35:C32_A A 35 ? A 32 ? ? 4 1 A C 41 1_555 A G 33 1_555 0.134 -0.089 0.161 4.440 -11.514 -0.525 17 A_C39:G31_A A 39 ? A 31 ? 19 1 1 A C 42 1_555 A G 32 1_555 -0.205 -0.047 -0.141 -0.529 0.680 -0.327 18 A_C40:G30_A A 40 ? A 30 ? 19 1 1 A U 43 1_555 A A 31 1_555 -0.021 -0.015 -0.125 2.376 -2.772 3.932 19 A_U41:A29_A A 41 ? A 29 ? 20 1 1 A G 44 1_555 A C 30 1_555 -0.146 -0.119 -0.067 0.466 -7.252 0.934 20 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A U 45 1_555 A G 29 1_555 2.808 -0.646 -0.179 2.479 -3.326 3.713 21 A_U43:G27_A A 43 ? A 27 ? 28 1 1 A A 46 1_555 A U 28 1_555 -0.053 -0.062 0.077 -4.795 2.861 -1.548 22 A_A44:U26_A A 44 ? A 26 ? 20 1 1 A C 12 1_555 A G 27 1_555 -0.005 -0.072 -0.180 -5.180 2.240 -2.967 23 A_C10:G25_A A 10 ? A 25 ? 19 1 1 A C 13 1_555 A G 26 1_555 0.092 -0.073 -0.125 -5.917 2.197 -0.052 24 A_C11:G24_A A 11 ? A 24 ? 19 1 1 A U 14 1_555 A G 25 1_555 2.517 -0.389 -0.062 1.948 0.989 1.690 25 A_U12:G23_A A 12 ? A 23 ? 28 1 1 A C 15 1_555 A G 24 1_555 0.080 -0.052 -0.009 3.462 3.063 0.472 26 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 16 1_555 A U 23 1_555 0.031 -0.099 -0.016 0.460 -1.441 3.984 27 A_A14:U21_A A 14 ? A 21 ? 20 1 1 A G 17 1_555 A C 22 1_555 -0.113 -0.037 -0.172 -1.664 3.123 -0.019 28 A_G15:C20A_A A 15 ? A 20 A 19 1 1 A U 18 1_555 A U 72 1_555 2.156 3.423 0.094 -16.835 2.687 177.198 29 A_U16:U59_A A 16 ? A 59 ? 13 2 1 A G 20 1_555 A C 69 1_555 0.326 -0.306 -0.182 -6.131 -8.674 -8.708 30 A_G19:C56_A A 19 ? A 56 ? 19 1 1 A G 47 1_555 A A 62 1_555 -0.256 1.471 0.123 -11.027 5.362 -8.091 31 A_G45:A48_A A 45 ? A 48 ? 8 1 1 A C 48 1_555 A G 61 1_555 0.075 -0.071 0.149 -3.239 -12.351 0.110 32 A_C46:G47L_A A 46 ? A 47 L 19 1 1 A U 49 1_555 A A 60 1_555 -0.010 -0.065 0.270 -3.728 -4.281 -1.579 33 A_U47:A47K_A A 47 ? A 47 K 20 1 1 A G 50 1_555 A C 59 1_555 0.130 0.079 0.043 0.088 1.569 -1.314 34 A_G47A:C47J_A A 47 A A 47 J 19 1 1 A U 51 1_555 A A 58 1_555 0.012 -0.050 0.092 -0.801 -3.328 -2.799 35 A_U47B:A47I_A A 47 B A 47 I 20 1 1 A C 52 1_555 A G 57 1_555 0.230 0.105 -0.043 1.873 2.815 2.316 36 A_C47C:G47H_A A 47 C A 47 H 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 86 1_555 A C 2 1_555 A G 85 1_555 0.581 -1.450 3.349 1.963 -4.635 33.200 -1.706 -0.666 3.541 -8.054 -3.410 33.568 1 AA_G1C2:G71C72_AA A 1 ? A 72 ? A 2 ? A 71 ? 1 A C 2 1_555 A G 85 1_555 A C 3 1_555 A G 84 1_555 0.707 -2.177 3.226 2.795 13.071 30.656 -5.669 -0.830 2.195 23.378 -5.000 33.379 2 AA_C2C3:G70G71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A C 3 1_555 A G 84 1_555 A C 4 1_555 A G 83 1_555 0.155 -2.034 2.925 2.570 12.656 33.304 -4.769 0.041 2.047 21.121 -4.289 35.654 3 AA_C3C4:G69G70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A C 4 1_555 A G 83 1_555 A G 5 1_555 A C 82 1_555 -0.327 -1.855 3.142 0.746 3.133 28.869 -4.338 0.804 2.920 6.260 -1.491 29.044 4 AA_C4G5:C68G69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A G 5 1_555 A C 82 1_555 A G 6 1_555 A U 81 1_555 0.936 -2.223 2.702 -0.842 13.175 22.203 -7.337 -2.247 1.180 30.943 1.978 25.789 5 AA_G5G5A:U67BC68_AA A 5 ? A 68 ? A 5 A A 67 B 1 A G 6 1_555 A U 81 1_555 A A 7 1_555 A U 80 1_555 0.364 -1.549 3.224 -2.787 6.732 40.740 -2.875 -0.798 2.913 9.577 3.966 41.359 6 AA_G5AA5B:U67AU67B_AA A 5 A A 67 B A 5 B A 67 A 1 A A 7 1_555 A U 80 1_555 A U 8 1_555 A U 79 1_555 0.131 -1.048 3.187 4.536 5.775 44.384 -1.870 0.220 3.034 7.583 -5.956 44.957 7 AA_A5BU6:U67U67A_AA A 5 B A 67 A A 6 ? A 67 ? 1 A U 8 1_555 A U 79 1_555 A G 9 1_555 A C 78 1_555 -1.079 -1.560 3.032 7.164 20.559 24.590 -5.347 2.813 1.094 39.742 -13.848 32.732 8 AA_U6G7:C66U67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A G 9 1_555 A C 78 1_555 A G 63 1_555 A C 77 1_555 0.546 -2.322 3.553 -1.077 13.382 29.688 -6.340 -1.151 2.299 24.595 1.980 32.520 9 AA_G7G50:C64C66_AA A 7 ? A 66 ? A 50 ? A 64 ? 1 A G 63 1_555 A C 77 1_555 A U 64 1_555 A A 76 1_555 -0.691 -1.711 3.342 -2.657 -8.458 34.694 -1.455 0.707 3.686 -13.905 4.369 35.775 10 AA_G50U51:A63C64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A U 64 1_555 A A 76 1_555 A G 65 1_555 A C 75 1_555 0.621 -1.454 2.772 -1.450 9.969 30.672 -3.994 -1.318 2.174 18.239 2.652 32.246 11 AA_U51G52:C62A63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A G 65 1_555 A C 75 1_555 A G 66 1_555 A C 74 1_555 0.092 -1.559 3.408 7.177 -4.301 32.933 -1.929 1.080 3.519 -7.438 -12.412 33.950 12 AA_G52G53:C61C62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 66 1_555 A C 74 1_555 A U 67 1_555 A A 71 1_555 -2.239 -1.896 3.458 3.894 -2.416 86.249 -1.329 1.727 3.417 -1.766 -2.846 86.347 13 AA_G53U54:A58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A U 67 1_555 A A 71 1_555 A U 68 1_555 A G 19 1_555 2.452 -2.289 3.183 12.107 3.463 42.743 -3.359 -2.067 3.532 4.632 -16.195 44.476 14 AA_U54U55:G18A58_AA A 54 ? A 58 ? A 55 ? A 18 ? 1 A C 37 1_555 A C 34 1_555 A C 41 1_555 A G 33 1_555 1.737 -1.606 3.326 -14.609 1.393 70.256 -1.419 -1.965 2.936 1.197 12.557 71.579 15 AA_C35C39:G31C32_AA A 35 ? A 32 ? A 39 ? A 31 ? 1 A C 41 1_555 A G 33 1_555 A C 42 1_555 A G 32 1_555 -0.650 -1.643 3.350 -5.659 -0.935 34.310 -2.599 0.184 3.452 -1.570 9.510 34.772 16 AA_C39C40:G30G31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A C 42 1_555 A G 32 1_555 A U 43 1_555 A A 31 1_555 -0.244 -1.981 2.978 -1.503 12.050 29.311 -5.403 0.225 2.035 22.627 2.822 31.676 17 AA_C40U41:A29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A U 43 1_555 A A 31 1_555 A G 44 1_555 A C 30 1_555 -0.006 -2.087 3.488 -4.574 3.556 27.322 -5.194 -1.106 3.156 7.423 9.547 27.918 18 AA_U41G42:C28A29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 44 1_555 A C 30 1_555 A U 45 1_555 A G 29 1_555 0.445 -1.229 3.241 2.705 -3.049 41.526 -1.402 -0.338 3.341 -4.287 -3.804 41.716 19 AA_G42U43:G27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A U 45 1_555 A G 29 1_555 A A 46 1_555 A U 28 1_555 -0.589 -2.473 3.242 5.554 10.349 19.915 -9.036 3.004 1.563 27.090 -14.538 23.090 20 AA_U43A44:U26G27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 46 1_555 A U 28 1_555 A C 12 1_555 A G 27 1_555 -0.292 -2.110 3.265 2.807 9.638 33.217 -4.885 0.882 2.540 16.399 -4.777 34.660 21 AA_A44C10:G25U26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A C 12 1_555 A G 27 1_555 A C 13 1_555 A G 26 1_555 -0.402 -2.048 3.157 0.332 1.842 32.680 -3.935 0.767 3.036 3.271 -0.589 32.732 22 AA_C10C11:G24G25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A C 13 1_555 A G 26 1_555 A U 14 1_555 A G 25 1_555 0.461 -1.503 2.922 1.525 2.171 41.098 -2.345 -0.510 2.857 3.088 -2.170 41.180 23 AA_C11U12:G23G24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 14 1_555 A G 25 1_555 A C 15 1_555 A G 24 1_555 0.010 -1.671 2.835 5.287 16.950 24.454 -5.690 0.754 1.386 34.758 -10.842 30.140 24 AA_U12C13:G22G23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 15 1_555 A G 24 1_555 A A 16 1_555 A U 23 1_555 0.286 -1.769 3.189 -0.040 1.148 24.792 -4.450 -0.676 3.105 2.673 0.093 24.819 25 AA_C13A14:U21G22_AA A 13 ? A 22 ? A 14 ? A 21 ? 1 A A 16 1_555 A U 23 1_555 A G 17 1_555 A C 22 1_555 0.132 -2.240 3.057 1.943 2.074 33.915 -4.130 0.058 2.922 3.547 -3.323 34.030 26 AA_A14G15:C20AU21_AA A 14 ? A 21 ? A 15 ? A 20 A 1 A G 17 1_555 A C 22 1_555 A U 18 1_555 A U 72 1_555 0.223 -0.947 3.027 -3.338 1.653 -45.991 1.076 0.019 3.066 -2.112 -4.264 -46.134 27 AA_G15U16:U59C20A_AA A 15 ? A 20 A A 16 ? A 59 ? 1 A G 47 1_555 A A 62 1_555 A C 48 1_555 A G 61 1_555 0.232 -1.610 3.237 -3.323 17.083 28.249 -5.302 -0.888 1.937 31.505 6.128 33.086 28 AA_G45C46:G47LA48_AA A 45 ? A 48 ? A 46 ? A 47 L 1 A C 48 1_555 A G 61 1_555 A U 49 1_555 A A 60 1_555 -0.166 -2.143 3.110 -3.761 9.428 30.274 -5.373 -0.285 2.356 17.448 6.961 31.892 29 AA_C46U47:A47KG47L_AA A 46 ? A 47 L A 47 ? A 47 K 1 A U 49 1_555 A A 60 1_555 A G 50 1_555 A C 59 1_555 0.336 -1.782 3.088 -0.630 3.737 29.205 -4.232 -0.784 2.835 7.372 1.244 29.445 30 AA_U47G47A:C47JA47K_AA A 47 ? A 47 K A 47 A A 47 J 1 A G 50 1_555 A C 59 1_555 A U 51 1_555 A A 58 1_555 -0.548 -1.733 3.390 0.755 2.371 30.771 -3.723 1.178 3.236 4.460 -1.419 30.869 31 AA_G47AU47B:A47IC47J_AA A 47 A A 47 J A 47 B A 47 I 1 A U 51 1_555 A A 58 1_555 A C 52 1_555 A G 57 1_555 0.839 -1.405 3.141 0.010 3.176 30.119 -3.292 -1.604 2.980 6.091 -0.018 30.282 32 AA_U47BC47C:G47HA47I_AA A 47 B A 47 I A 47 C A 47 H # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 2TRA 'PDB ENTRY 2TRA, 6TNA' 2 ? 'experimental model' PDB 6TNA 'PDB ENTRY 2TRA, 6TNA' #