data_3B38 # _entry.id 3B38 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3B38 pdb_00003b38 10.2210/pdb3b38/pdb RCSB RCSB045022 ? ? WWPDB D_1000045022 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2RK3 'Structure of A104T DJ-1' unspecified PDB 2RK4 'Structure of M26I DJ-1' unspecified PDB 2RK6 'Structure of E163K DJ-1' unspecified PDB 3B36 'Structure of M26L DJ-1' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3B38 _pdbx_database_status.recvd_initial_deposition_date 2007-10-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lakshminarasimhan, M.' 1 'Maldonado, M.T.' 2 'Zhou, W.' 3 'Fink, A.L.' 4 'Wilson, M.A.' 5 # _citation.id primary _citation.title 'Structural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1.' _citation.journal_abbrev Biochemistry _citation.journal_volume 47 _citation.page_first 1381 _citation.page_last 1392 _citation.year 2008 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18181649 _citation.pdbx_database_id_DOI 10.1021/bi701189c # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lakshminarasimhan, M.' 1 ? primary 'Maldonado, M.T.' 2 ? primary 'Zhou, W.' 3 ? primary 'Fink, A.L.' 4 ? primary 'Wilson, M.A.' 5 ? # _cell.entry_id 3B38 _cell.length_a 66.842 _cell.length_b 66.842 _cell.length_c 175.852 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3B38 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein DJ-1' 20227.381 1 ? A104V ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 7 ? ? ? ? 3 water nat water 18.015 189 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Oncogene DJ1, Parkinson disease protein 7' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL GAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRG PGTSFEFALAIVEALNGKEVAAQVKAPLVLKD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL GAQNLSESAAVKEILKEQENRKGLIAVICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRG PGTSFEFALAIVEALNGKEVAAQVKAPLVLKD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 LYS n 1 8 ARG n 1 9 ALA n 1 10 LEU n 1 11 VAL n 1 12 ILE n 1 13 LEU n 1 14 ALA n 1 15 LYS n 1 16 GLY n 1 17 ALA n 1 18 GLU n 1 19 GLU n 1 20 MET n 1 21 GLU n 1 22 THR n 1 23 VAL n 1 24 ILE n 1 25 PRO n 1 26 VAL n 1 27 ASP n 1 28 VAL n 1 29 MET n 1 30 ARG n 1 31 ARG n 1 32 ALA n 1 33 GLY n 1 34 ILE n 1 35 LYS n 1 36 VAL n 1 37 THR n 1 38 VAL n 1 39 ALA n 1 40 GLY n 1 41 LEU n 1 42 ALA n 1 43 GLY n 1 44 LYS n 1 45 ASP n 1 46 PRO n 1 47 VAL n 1 48 GLN n 1 49 CYS n 1 50 SER n 1 51 ARG n 1 52 ASP n 1 53 VAL n 1 54 VAL n 1 55 ILE n 1 56 CYS n 1 57 PRO n 1 58 ASP n 1 59 ALA n 1 60 SER n 1 61 LEU n 1 62 GLU n 1 63 ASP n 1 64 ALA n 1 65 LYS n 1 66 LYS n 1 67 GLU n 1 68 GLY n 1 69 PRO n 1 70 TYR n 1 71 ASP n 1 72 VAL n 1 73 VAL n 1 74 VAL n 1 75 LEU n 1 76 PRO n 1 77 GLY n 1 78 GLY n 1 79 ASN n 1 80 LEU n 1 81 GLY n 1 82 ALA n 1 83 GLN n 1 84 ASN n 1 85 LEU n 1 86 SER n 1 87 GLU n 1 88 SER n 1 89 ALA n 1 90 ALA n 1 91 VAL n 1 92 LYS n 1 93 GLU n 1 94 ILE n 1 95 LEU n 1 96 LYS n 1 97 GLU n 1 98 GLN n 1 99 GLU n 1 100 ASN n 1 101 ARG n 1 102 LYS n 1 103 GLY n 1 104 LEU n 1 105 ILE n 1 106 ALA n 1 107 VAL n 1 108 ILE n 1 109 CYS n 1 110 ALA n 1 111 GLY n 1 112 PRO n 1 113 THR n 1 114 ALA n 1 115 LEU n 1 116 LEU n 1 117 ALA n 1 118 HIS n 1 119 GLU n 1 120 ILE n 1 121 GLY n 1 122 PHE n 1 123 GLY n 1 124 SER n 1 125 LYS n 1 126 VAL n 1 127 THR n 1 128 THR n 1 129 HIS n 1 130 PRO n 1 131 LEU n 1 132 ALA n 1 133 LYS n 1 134 ASP n 1 135 LYS n 1 136 MET n 1 137 MET n 1 138 ASN n 1 139 GLY n 1 140 GLY n 1 141 HIS n 1 142 TYR n 1 143 THR n 1 144 TYR n 1 145 SER n 1 146 GLU n 1 147 ASN n 1 148 ARG n 1 149 VAL n 1 150 GLU n 1 151 LYS n 1 152 ASP n 1 153 GLY n 1 154 LEU n 1 155 ILE n 1 156 LEU n 1 157 THR n 1 158 SER n 1 159 ARG n 1 160 GLY n 1 161 PRO n 1 162 GLY n 1 163 THR n 1 164 SER n 1 165 PHE n 1 166 GLU n 1 167 PHE n 1 168 ALA n 1 169 LEU n 1 170 ALA n 1 171 ILE n 1 172 VAL n 1 173 GLU n 1 174 ALA n 1 175 LEU n 1 176 ASN n 1 177 GLY n 1 178 LYS n 1 179 GLU n 1 180 VAL n 1 181 ALA n 1 182 ALA n 1 183 GLN n 1 184 VAL n 1 185 LYS n 1 186 ALA n 1 187 PRO n 1 188 LEU n 1 189 VAL n 1 190 LEU n 1 191 LYS n 1 192 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PARK7 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PARK7_HUMAN _struct_ref.pdbx_db_accession Q99497 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ NLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGT SFEFALAIVEALNGKEVAAQVKAPLVLKD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3B38 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 192 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99497 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 189 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 189 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3B38 GLY A 1 ? UNP Q99497 ? ? 'expression tag' -2 1 1 3B38 SER A 2 ? UNP Q99497 ? ? 'expression tag' -1 2 1 3B38 HIS A 3 ? UNP Q99497 ? ? 'expression tag' 0 3 1 3B38 VAL A 107 ? UNP Q99497 ALA 104 'engineered mutation' 104 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3B38 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.80 _exptl_crystal.density_percent_sol 56.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '30% PEG 3000, 100 mM HEPES, 200 mM NaCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2007-09-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'OSMIC BLUE CONFOCAL MIRRORS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.542 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.542 # _reflns.entry_id 3B38 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 57.93 _reflns.number_all 20778 _reflns.number_obs 20778 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 31.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.075 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 14.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2025 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3B38 _refine.ls_number_reflns_obs 19656 _refine.ls_number_reflns_all 19656 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 99.87 _refine.ls_R_factor_obs 0.18346 _refine.ls_R_factor_all 0.18346 _refine.ls_R_factor_R_work 0.18133 _refine.ls_R_factor_R_free 0.2263 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1064 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .956 _refine.correlation_coeff_Fo_to_Fc_free .936 _refine.B_iso_mean 21.541 _refine.aniso_B[1][1] .03 _refine.aniso_B[2][2] .03 _refine.aniso_B[3][3] -.04 _refine.aniso_B[1][2] .01 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1P5F _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R .121 _refine.pdbx_overall_ESU_R_Free .123 _refine.overall_SU_ML .070 _refine.overall_SU_B 2.231 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1420 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 189 _refine_hist.number_atoms_total 1637 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .013 .022 ? 1461 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.339 2.001 ? 1962 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.894 5.000 ? 194 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.365 25.294 ? 51 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.947 15.000 ? 262 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.326 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr .086 .200 ? 230 'X-RAY DIFFRACTION' ? r_gen_planes_refined .005 .020 ? 1056 'X-RAY DIFFRACTION' ? r_nbd_refined .202 .200 ? 729 'X-RAY DIFFRACTION' ? r_nbtor_refined .300 .200 ? 977 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .145 .200 ? 142 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .209 .200 ? 65 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .163 .200 ? 14 'X-RAY DIFFRACTION' ? r_mcbond_it .791 1.500 ? 997 'X-RAY DIFFRACTION' ? r_mcangle_it 1.218 2.000 ? 1533 'X-RAY DIFFRACTION' ? r_scbond_it 2.090 3.000 ? 521 'X-RAY DIFFRACTION' ? r_scangle_it 3.351 4.500 ? 429 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.85 _refine_ls_shell.d_res_low 1.897 _refine_ls_shell.number_reflns_R_work 1369 _refine_ls_shell.R_factor_R_work 0.28 _refine_ls_shell.percent_reflns_obs 98.99 _refine_ls_shell.R_factor_R_free 0.321 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3B38 _struct.title 'Structure of A104V DJ-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3B38 _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text ;PARKINSON'S DISEASE, PFPI, THIJ, Chaperone, Cytoplasm, Disease mutation, Nucleus, Oncogene, Oxidation, Parkinson disease, Phosphorylation, Polymorphism, Ubl conjugation ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 18 ? ALA A 32 ? GLU A 15 ALA A 29 1 ? 15 HELX_P HELX_P2 2 LEU A 61 ? LYS A 65 ? LEU A 58 LYS A 62 1 ? 5 HELX_P HELX_P3 3 LYS A 66 ? GLY A 68 ? LYS A 63 GLY A 65 5 ? 3 HELX_P HELX_P4 4 GLY A 78 ? SER A 88 ? GLY A 75 SER A 85 1 ? 11 HELX_P HELX_P5 5 SER A 88 ? ARG A 101 ? SER A 85 ARG A 98 1 ? 14 HELX_P HELX_P6 6 PRO A 112 ? HIS A 118 ? PRO A 109 HIS A 115 1 ? 7 HELX_P HELX_P7 7 HIS A 129 ? LEU A 131 ? HIS A 126 LEU A 128 5 ? 3 HELX_P HELX_P8 8 ALA A 132 ? ASN A 138 ? ALA A 129 ASN A 135 1 ? 7 HELX_P HELX_P9 9 GLY A 160 ? GLY A 162 ? GLY A 157 GLY A 159 5 ? 3 HELX_P HELX_P10 10 THR A 163 ? GLY A 177 ? THR A 160 GLY A 174 1 ? 15 HELX_P HELX_P11 11 GLY A 177 ? ALA A 186 ? GLY A 174 ALA A 183 1 ? 10 HELX_P HELX_P12 12 PRO A 187 ? VAL A 189 ? PRO A 184 VAL A 186 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 68 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 65 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 69 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 66 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.66 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 59 ? SER A 60 ? ALA A 56 SER A 57 A 2 LYS A 35 ? GLY A 40 ? LYS A 32 GLY A 37 A 3 ARG A 8 ? LEU A 13 ? ARG A 5 LEU A 10 A 4 VAL A 72 ? LEU A 75 ? VAL A 69 LEU A 72 A 5 LEU A 104 ? ILE A 108 ? LEU A 101 ILE A 105 A 6 ILE A 155 ? SER A 158 ? ILE A 152 SER A 155 A 7 VAL A 149 ? ASP A 152 ? VAL A 146 ASP A 149 B 1 VAL A 47 ? GLN A 48 ? VAL A 44 GLN A 45 B 2 VAL A 54 ? ILE A 55 ? VAL A 51 ILE A 52 C 1 LYS A 125 ? VAL A 126 ? LYS A 122 VAL A 123 C 2 THR A 143 ? TYR A 144 ? THR A 140 TYR A 141 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 59 ? O ALA A 56 N GLY A 40 ? N GLY A 37 A 2 3 O ALA A 39 ? O ALA A 36 N LEU A 13 ? N LEU A 10 A 3 4 N LEU A 10 ? N LEU A 7 O VAL A 74 ? O VAL A 71 A 4 5 N VAL A 73 ? N VAL A 70 O ALA A 106 ? O ALA A 103 A 5 6 N ILE A 105 ? N ILE A 102 O LEU A 156 ? O LEU A 153 A 6 7 O THR A 157 ? O THR A 154 N GLU A 150 ? N GLU A 147 B 1 2 N VAL A 47 ? N VAL A 44 O ILE A 55 ? O ILE A 52 C 1 2 N VAL A 126 ? N VAL A 123 O THR A 143 ? O THR A 140 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 190 ? 4 'BINDING SITE FOR RESIDUE EDO A 190' AC2 Software A EDO 191 ? 6 'BINDING SITE FOR RESIDUE EDO A 191' AC3 Software A EDO 192 ? 9 'BINDING SITE FOR RESIDUE EDO A 192' AC4 Software A EDO 193 ? 4 'BINDING SITE FOR RESIDUE EDO A 193' AC5 Software A EDO 194 ? 5 'BINDING SITE FOR RESIDUE EDO A 194' AC6 Software A EDO 195 ? 5 'BINDING SITE FOR RESIDUE EDO A 195' AC7 Software A EDO 196 ? 4 'BINDING SITE FOR RESIDUE EDO A 196' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLN A 183 ? GLN A 180 . ? 9_555 ? 2 AC1 4 GLN A 183 ? GLN A 180 . ? 1_555 ? 3 AC1 4 HOH I . ? HOH A 255 . ? 9_555 ? 4 AC1 4 HOH I . ? HOH A 255 . ? 1_555 ? 5 AC2 6 ASN A 79 ? ASN A 76 . ? 1_555 ? 6 AC2 6 ALA A 110 ? ALA A 107 . ? 1_555 ? 7 AC2 6 HIS A 129 ? HIS A 126 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH A 217 . ? 1_555 ? 9 AC2 6 HOH I . ? HOH A 293 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH A 319 . ? 1_555 ? 11 AC3 9 LEU A 13 ? LEU A 10 . ? 1_555 ? 12 AC3 9 ALA A 14 ? ALA A 11 . ? 1_555 ? 13 AC3 9 LYS A 15 ? LYS A 12 . ? 1_555 ? 14 AC3 9 GLY A 40 ? GLY A 37 . ? 1_555 ? 15 AC3 9 LEU A 41 ? LEU A 38 . ? 1_555 ? 16 AC3 9 ALA A 42 ? ALA A 39 . ? 1_555 ? 17 AC3 9 VAL A 47 ? VAL A 44 . ? 1_555 ? 18 AC3 9 HOH I . ? HOH A 256 . ? 1_555 ? 19 AC3 9 HOH I . ? HOH A 360 . ? 1_555 ? 20 AC4 4 ASN A 147 ? ASN A 144 . ? 1_555 ? 21 AC4 4 ARG A 148 ? ARG A 145 . ? 1_555 ? 22 AC4 4 VAL A 149 ? VAL A 146 . ? 1_555 ? 23 AC4 4 HOH I . ? HOH A 230 . ? 1_555 ? 24 AC5 5 MET A 4 ? MET A 1 . ? 9_555 ? 25 AC5 5 ARG A 30 ? ARG A 27 . ? 1_555 ? 26 AC5 5 GLY A 33 ? GLY A 30 . ? 1_555 ? 27 AC5 5 ILE A 34 ? ILE A 31 . ? 1_555 ? 28 AC5 5 HOH I . ? HOH A 205 . ? 1_555 ? 29 AC6 5 HIS A 129 ? HIS A 126 . ? 10_555 ? 30 AC6 5 PRO A 130 ? PRO A 127 . ? 10_555 ? 31 AC6 5 HOH I . ? HOH A 238 . ? 1_555 ? 32 AC6 5 HOH I . ? HOH A 382 . ? 1_555 ? 33 AC6 5 HOH I . ? HOH A 383 . ? 9_555 ? 34 AC7 4 PRO A 69 ? PRO A 66 . ? 1_555 ? 35 AC7 4 TYR A 70 ? TYR A 67 . ? 1_555 ? 36 AC7 4 GLN A 98 ? GLN A 95 . ? 1_555 ? 37 AC7 4 HOH I . ? HOH A 316 . ? 1_555 ? # _database_PDB_matrix.entry_id 3B38 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3B38 _atom_sites.fract_transf_matrix[1][1] .014961 _atom_sites.fract_transf_matrix[1][2] .008638 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .017275 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .005687 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -2 GLY GLY A . n A 1 2 SER 2 -1 -1 SER SER A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 SER 6 3 3 SER SER A . n A 1 7 LYS 7 4 4 LYS LYS A . n A 1 8 ARG 8 5 5 ARG ARG A . n A 1 9 ALA 9 6 6 ALA ALA A . n A 1 10 LEU 10 7 7 LEU LEU A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 ALA 14 11 11 ALA ALA A . n A 1 15 LYS 15 12 12 LYS LYS A . n A 1 16 GLY 16 13 13 GLY GLY A . n A 1 17 ALA 17 14 14 ALA ALA A . n A 1 18 GLU 18 15 15 GLU GLU A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 MET 20 17 17 MET MET A . n A 1 21 GLU 21 18 18 GLU GLU A . n A 1 22 THR 22 19 19 THR THR A . n A 1 23 VAL 23 20 20 VAL VAL A . n A 1 24 ILE 24 21 21 ILE ILE A . n A 1 25 PRO 25 22 22 PRO PRO A . n A 1 26 VAL 26 23 23 VAL VAL A . n A 1 27 ASP 27 24 24 ASP ASP A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 MET 29 26 26 MET MET A . n A 1 30 ARG 30 27 27 ARG ARG A . n A 1 31 ARG 31 28 28 ARG ARG A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 GLY 33 30 30 GLY GLY A . n A 1 34 ILE 34 31 31 ILE ILE A . n A 1 35 LYS 35 32 32 LYS LYS A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 THR 37 34 34 THR THR A . n A 1 38 VAL 38 35 35 VAL VAL A . n A 1 39 ALA 39 36 36 ALA ALA A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 ALA 42 39 39 ALA ALA A . n A 1 43 GLY 43 40 40 GLY GLY A . n A 1 44 LYS 44 41 41 LYS LYS A . n A 1 45 ASP 45 42 42 ASP ASP A . n A 1 46 PRO 46 43 43 PRO PRO A . n A 1 47 VAL 47 44 44 VAL VAL A . n A 1 48 GLN 48 45 45 GLN GLN A . n A 1 49 CYS 49 46 46 CYS CYS A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 ARG 51 48 48 ARG ARG A . n A 1 52 ASP 52 49 49 ASP ASP A . n A 1 53 VAL 53 50 50 VAL VAL A . n A 1 54 VAL 54 51 51 VAL VAL A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 CYS 56 53 53 CYS CYS A . n A 1 57 PRO 57 54 54 PRO PRO A . n A 1 58 ASP 58 55 55 ASP ASP A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 GLU 62 59 59 GLU GLU A . n A 1 63 ASP 63 60 60 ASP ASP A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 LYS 65 62 62 LYS LYS A . n A 1 66 LYS 66 63 63 LYS LYS A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 GLY 68 65 65 GLY GLY A . n A 1 69 PRO 69 66 66 PRO PRO A . n A 1 70 TYR 70 67 67 TYR TYR A . n A 1 71 ASP 71 68 68 ASP ASP A . n A 1 72 VAL 72 69 69 VAL VAL A . n A 1 73 VAL 73 70 70 VAL VAL A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 LEU 75 72 72 LEU LEU A . n A 1 76 PRO 76 73 73 PRO PRO A . n A 1 77 GLY 77 74 74 GLY GLY A . n A 1 78 GLY 78 75 75 GLY GLY A . n A 1 79 ASN 79 76 76 ASN ASN A . n A 1 80 LEU 80 77 77 LEU LEU A . n A 1 81 GLY 81 78 78 GLY GLY A . n A 1 82 ALA 82 79 79 ALA ALA A . n A 1 83 GLN 83 80 80 GLN GLN A . n A 1 84 ASN 84 81 81 ASN ASN A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 GLU 87 84 84 GLU GLU A . n A 1 88 SER 88 85 85 SER SER A . n A 1 89 ALA 89 86 86 ALA ALA A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 VAL 91 88 88 VAL VAL A . n A 1 92 LYS 92 89 89 LYS LYS A . n A 1 93 GLU 93 90 90 GLU GLU A . n A 1 94 ILE 94 91 91 ILE ILE A . n A 1 95 LEU 95 92 92 LEU LEU A . n A 1 96 LYS 96 93 93 LYS LYS A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 GLN 98 95 95 GLN GLN A . n A 1 99 GLU 99 96 96 GLU GLU A . n A 1 100 ASN 100 97 97 ASN ASN A . n A 1 101 ARG 101 98 98 ARG ARG A . n A 1 102 LYS 102 99 99 LYS LYS A . n A 1 103 GLY 103 100 100 GLY GLY A . n A 1 104 LEU 104 101 101 LEU LEU A . n A 1 105 ILE 105 102 102 ILE ILE A . n A 1 106 ALA 106 103 103 ALA ALA A . n A 1 107 VAL 107 104 104 VAL VAL A . n A 1 108 ILE 108 105 105 ILE ILE A . n A 1 109 CYS 109 106 106 CYS CYS A . n A 1 110 ALA 110 107 107 ALA ALA A . n A 1 111 GLY 111 108 108 GLY GLY A . n A 1 112 PRO 112 109 109 PRO PRO A . n A 1 113 THR 113 110 110 THR THR A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 LEU 115 112 112 LEU LEU A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 ALA 117 114 114 ALA ALA A . n A 1 118 HIS 118 115 115 HIS HIS A . n A 1 119 GLU 119 116 116 GLU GLU A . n A 1 120 ILE 120 117 117 ILE ILE A . n A 1 121 GLY 121 118 118 GLY GLY A . n A 1 122 PHE 122 119 119 PHE PHE A . n A 1 123 GLY 123 120 120 GLY GLY A . n A 1 124 SER 124 121 121 SER SER A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 VAL 126 123 123 VAL VAL A . n A 1 127 THR 127 124 124 THR THR A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 HIS 129 126 126 HIS HIS A . n A 1 130 PRO 130 127 127 PRO PRO A . n A 1 131 LEU 131 128 128 LEU LEU A . n A 1 132 ALA 132 129 129 ALA ALA A . n A 1 133 LYS 133 130 130 LYS LYS A . n A 1 134 ASP 134 131 131 ASP ASP A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 MET 136 133 133 MET MET A . n A 1 137 MET 137 134 134 MET MET A . n A 1 138 ASN 138 135 135 ASN ASN A . n A 1 139 GLY 139 136 136 GLY GLY A . n A 1 140 GLY 140 137 137 GLY GLY A . n A 1 141 HIS 141 138 138 HIS HIS A . n A 1 142 TYR 142 139 139 TYR TYR A . n A 1 143 THR 143 140 140 THR THR A . n A 1 144 TYR 144 141 141 TYR TYR A . n A 1 145 SER 145 142 142 SER SER A . n A 1 146 GLU 146 143 143 GLU GLU A . n A 1 147 ASN 147 144 144 ASN ASN A . n A 1 148 ARG 148 145 145 ARG ARG A . n A 1 149 VAL 149 146 146 VAL VAL A . n A 1 150 GLU 150 147 147 GLU GLU A . n A 1 151 LYS 151 148 148 LYS LYS A . n A 1 152 ASP 152 149 149 ASP ASP A . n A 1 153 GLY 153 150 150 GLY GLY A . n A 1 154 LEU 154 151 151 LEU LEU A . n A 1 155 ILE 155 152 152 ILE ILE A . n A 1 156 LEU 156 153 153 LEU LEU A . n A 1 157 THR 157 154 154 THR THR A . n A 1 158 SER 158 155 155 SER SER A . n A 1 159 ARG 159 156 156 ARG ARG A . n A 1 160 GLY 160 157 157 GLY GLY A . n A 1 161 PRO 161 158 158 PRO PRO A . n A 1 162 GLY 162 159 159 GLY GLY A . n A 1 163 THR 163 160 160 THR THR A . n A 1 164 SER 164 161 161 SER SER A . n A 1 165 PHE 165 162 162 PHE PHE A . n A 1 166 GLU 166 163 163 GLU GLU A . n A 1 167 PHE 167 164 164 PHE PHE A . n A 1 168 ALA 168 165 165 ALA ALA A . n A 1 169 LEU 169 166 166 LEU LEU A . n A 1 170 ALA 170 167 167 ALA ALA A . n A 1 171 ILE 171 168 168 ILE ILE A . n A 1 172 VAL 172 169 169 VAL VAL A . n A 1 173 GLU 173 170 170 GLU GLU A . n A 1 174 ALA 174 171 171 ALA ALA A . n A 1 175 LEU 175 172 172 LEU LEU A . n A 1 176 ASN 176 173 173 ASN ASN A . n A 1 177 GLY 177 174 174 GLY GLY A . n A 1 178 LYS 178 175 175 LYS LYS A . n A 1 179 GLU 179 176 176 GLU GLU A . n A 1 180 VAL 180 177 177 VAL VAL A . n A 1 181 ALA 181 178 178 ALA ALA A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 GLN 183 180 180 GLN GLN A . n A 1 184 VAL 184 181 181 VAL VAL A . n A 1 185 LYS 185 182 182 LYS LYS A . n A 1 186 ALA 186 183 183 ALA ALA A . n A 1 187 PRO 187 184 184 PRO PRO A . n A 1 188 LEU 188 185 185 LEU LEU A . n A 1 189 VAL 189 186 186 VAL VAL A . n A 1 190 LEU 190 187 187 LEU LEU A . n A 1 191 LYS 191 188 188 LYS LYS A . n A 1 192 ASP 192 189 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 190 1 EDO EDO A . C 2 EDO 1 191 2 EDO EDO A . D 2 EDO 1 192 3 EDO EDO A . E 2 EDO 1 193 4 EDO EDO A . F 2 EDO 1 194 5 EDO EDO A . G 2 EDO 1 195 6 EDO EDO A . H 2 EDO 1 196 7 EDO EDO A . I 3 HOH 1 197 1 HOH HOH A . I 3 HOH 2 198 2 HOH HOH A . I 3 HOH 3 199 3 HOH HOH A . I 3 HOH 4 200 4 HOH HOH A . I 3 HOH 5 201 5 HOH HOH A . I 3 HOH 6 202 6 HOH HOH A . I 3 HOH 7 203 7 HOH HOH A . I 3 HOH 8 204 8 HOH HOH A . I 3 HOH 9 205 9 HOH HOH A . I 3 HOH 10 206 10 HOH HOH A . I 3 HOH 11 207 11 HOH HOH A . I 3 HOH 12 208 12 HOH HOH A . I 3 HOH 13 209 13 HOH HOH A . I 3 HOH 14 210 14 HOH HOH A . I 3 HOH 15 211 15 HOH HOH A . I 3 HOH 16 212 16 HOH HOH A . I 3 HOH 17 213 17 HOH HOH A . I 3 HOH 18 214 18 HOH HOH A . I 3 HOH 19 215 19 HOH HOH A . I 3 HOH 20 216 20 HOH HOH A . I 3 HOH 21 217 21 HOH HOH A . I 3 HOH 22 218 22 HOH HOH A . I 3 HOH 23 219 23 HOH HOH A . I 3 HOH 24 220 24 HOH HOH A . I 3 HOH 25 221 25 HOH HOH A . I 3 HOH 26 222 26 HOH HOH A . I 3 HOH 27 223 27 HOH HOH A . I 3 HOH 28 224 28 HOH HOH A . I 3 HOH 29 225 29 HOH HOH A . I 3 HOH 30 226 30 HOH HOH A . I 3 HOH 31 227 31 HOH HOH A . I 3 HOH 32 228 32 HOH HOH A . I 3 HOH 33 229 33 HOH HOH A . I 3 HOH 34 230 34 HOH HOH A . I 3 HOH 35 231 35 HOH HOH A . I 3 HOH 36 232 36 HOH HOH A . I 3 HOH 37 233 37 HOH HOH A . I 3 HOH 38 234 38 HOH HOH A . I 3 HOH 39 235 39 HOH HOH A . I 3 HOH 40 236 40 HOH HOH A . I 3 HOH 41 237 41 HOH HOH A . I 3 HOH 42 238 42 HOH HOH A . I 3 HOH 43 239 43 HOH HOH A . I 3 HOH 44 240 44 HOH HOH A . I 3 HOH 45 241 45 HOH HOH A . I 3 HOH 46 242 46 HOH HOH A . I 3 HOH 47 243 47 HOH HOH A . I 3 HOH 48 244 48 HOH HOH A . I 3 HOH 49 245 49 HOH HOH A . I 3 HOH 50 246 50 HOH HOH A . I 3 HOH 51 247 51 HOH HOH A . I 3 HOH 52 248 52 HOH HOH A . I 3 HOH 53 249 53 HOH HOH A . I 3 HOH 54 250 54 HOH HOH A . I 3 HOH 55 251 55 HOH HOH A . I 3 HOH 56 252 56 HOH HOH A . I 3 HOH 57 253 57 HOH HOH A . I 3 HOH 58 254 58 HOH HOH A . I 3 HOH 59 255 59 HOH HOH A . I 3 HOH 60 256 60 HOH HOH A . I 3 HOH 61 257 61 HOH HOH A . I 3 HOH 62 258 62 HOH HOH A . I 3 HOH 63 259 63 HOH HOH A . I 3 HOH 64 260 64 HOH HOH A . I 3 HOH 65 261 65 HOH HOH A . I 3 HOH 66 262 66 HOH HOH A . I 3 HOH 67 263 67 HOH HOH A . I 3 HOH 68 264 68 HOH HOH A . I 3 HOH 69 265 69 HOH HOH A . I 3 HOH 70 266 70 HOH HOH A . I 3 HOH 71 267 71 HOH HOH A . I 3 HOH 72 268 72 HOH HOH A . I 3 HOH 73 269 73 HOH HOH A . I 3 HOH 74 270 74 HOH HOH A . I 3 HOH 75 271 75 HOH HOH A . I 3 HOH 76 272 76 HOH HOH A . I 3 HOH 77 273 77 HOH HOH A . I 3 HOH 78 274 78 HOH HOH A . I 3 HOH 79 275 79 HOH HOH A . I 3 HOH 80 276 80 HOH HOH A . I 3 HOH 81 277 81 HOH HOH A . I 3 HOH 82 278 82 HOH HOH A . I 3 HOH 83 279 83 HOH HOH A . I 3 HOH 84 280 84 HOH HOH A . I 3 HOH 85 281 85 HOH HOH A . I 3 HOH 86 282 86 HOH HOH A . I 3 HOH 87 283 87 HOH HOH A . I 3 HOH 88 284 88 HOH HOH A . I 3 HOH 89 285 89 HOH HOH A . I 3 HOH 90 286 90 HOH HOH A . I 3 HOH 91 287 91 HOH HOH A . I 3 HOH 92 288 92 HOH HOH A . I 3 HOH 93 289 93 HOH HOH A . I 3 HOH 94 290 94 HOH HOH A . I 3 HOH 95 291 95 HOH HOH A . I 3 HOH 96 292 96 HOH HOH A . I 3 HOH 97 293 97 HOH HOH A . I 3 HOH 98 294 98 HOH HOH A . I 3 HOH 99 295 99 HOH HOH A . I 3 HOH 100 296 100 HOH HOH A . I 3 HOH 101 297 101 HOH HOH A . I 3 HOH 102 298 102 HOH HOH A . I 3 HOH 103 299 103 HOH HOH A . I 3 HOH 104 300 104 HOH HOH A . I 3 HOH 105 301 105 HOH HOH A . I 3 HOH 106 302 106 HOH HOH A . I 3 HOH 107 303 107 HOH HOH A . I 3 HOH 108 304 108 HOH HOH A . I 3 HOH 109 305 109 HOH HOH A . I 3 HOH 110 306 110 HOH HOH A . I 3 HOH 111 307 111 HOH HOH A . I 3 HOH 112 308 112 HOH HOH A . I 3 HOH 113 309 113 HOH HOH A . I 3 HOH 114 310 114 HOH HOH A . I 3 HOH 115 311 115 HOH HOH A . I 3 HOH 116 312 116 HOH HOH A . I 3 HOH 117 313 117 HOH HOH A . I 3 HOH 118 314 118 HOH HOH A . I 3 HOH 119 315 119 HOH HOH A . I 3 HOH 120 316 120 HOH HOH A . I 3 HOH 121 317 121 HOH HOH A . I 3 HOH 122 318 122 HOH HOH A . I 3 HOH 123 319 123 HOH HOH A . I 3 HOH 124 320 124 HOH HOH A . I 3 HOH 125 321 125 HOH HOH A . I 3 HOH 126 322 126 HOH HOH A . I 3 HOH 127 323 127 HOH HOH A . I 3 HOH 128 324 128 HOH HOH A . I 3 HOH 129 325 129 HOH HOH A . I 3 HOH 130 326 130 HOH HOH A . I 3 HOH 131 327 131 HOH HOH A . I 3 HOH 132 328 132 HOH HOH A . I 3 HOH 133 329 133 HOH HOH A . I 3 HOH 134 330 134 HOH HOH A . I 3 HOH 135 331 135 HOH HOH A . I 3 HOH 136 332 136 HOH HOH A . I 3 HOH 137 333 137 HOH HOH A . I 3 HOH 138 334 138 HOH HOH A . I 3 HOH 139 335 139 HOH HOH A . I 3 HOH 140 336 140 HOH HOH A . I 3 HOH 141 337 141 HOH HOH A . I 3 HOH 142 338 142 HOH HOH A . I 3 HOH 143 339 143 HOH HOH A . I 3 HOH 144 340 144 HOH HOH A . I 3 HOH 145 341 145 HOH HOH A . I 3 HOH 146 342 146 HOH HOH A . I 3 HOH 147 343 147 HOH HOH A . I 3 HOH 148 344 148 HOH HOH A . I 3 HOH 149 345 149 HOH HOH A . I 3 HOH 150 346 150 HOH HOH A . I 3 HOH 151 347 151 HOH HOH A . I 3 HOH 152 348 152 HOH HOH A . I 3 HOH 153 349 153 HOH HOH A . I 3 HOH 154 350 154 HOH HOH A . I 3 HOH 155 351 155 HOH HOH A . I 3 HOH 156 352 156 HOH HOH A . I 3 HOH 157 353 157 HOH HOH A . I 3 HOH 158 354 158 HOH HOH A . I 3 HOH 159 355 159 HOH HOH A . I 3 HOH 160 356 160 HOH HOH A . I 3 HOH 161 357 161 HOH HOH A . I 3 HOH 162 358 162 HOH HOH A . I 3 HOH 163 359 163 HOH HOH A . I 3 HOH 164 360 164 HOH HOH A . I 3 HOH 165 361 165 HOH HOH A . I 3 HOH 166 362 166 HOH HOH A . I 3 HOH 167 363 167 HOH HOH A . I 3 HOH 168 364 168 HOH HOH A . I 3 HOH 169 365 169 HOH HOH A . I 3 HOH 170 366 170 HOH HOH A . I 3 HOH 171 367 171 HOH HOH A . I 3 HOH 172 368 172 HOH HOH A . I 3 HOH 173 369 173 HOH HOH A . I 3 HOH 174 370 174 HOH HOH A . I 3 HOH 175 371 175 HOH HOH A . I 3 HOH 176 372 176 HOH HOH A . I 3 HOH 177 373 177 HOH HOH A . I 3 HOH 178 374 178 HOH HOH A . I 3 HOH 179 375 179 HOH HOH A . I 3 HOH 180 376 180 HOH HOH A . I 3 HOH 181 377 181 HOH HOH A . I 3 HOH 182 378 182 HOH HOH A . I 3 HOH 183 379 183 HOH HOH A . I 3 HOH 184 380 184 HOH HOH A . I 3 HOH 185 381 185 HOH HOH A . I 3 HOH 186 382 186 HOH HOH A . I 3 HOH 187 383 187 HOH HOH A . I 3 HOH 188 384 188 HOH HOH A . I 3 HOH 189 385 189 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4990 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 29.3086666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 CrystalClear 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 PHASER phasing . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id CYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 106 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 74.66 _pdbx_validate_torsion.psi -107.14 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ASP _pdbx_unobs_or_zero_occ_residues.auth_seq_id 189 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ASP _pdbx_unobs_or_zero_occ_residues.label_seq_id 192 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 THR N CA sing N N 299 THR N H sing N N 300 THR N H2 sing N N 301 THR CA C sing N N 302 THR CA CB sing N N 303 THR CA HA sing N N 304 THR C O doub N N 305 THR C OXT sing N N 306 THR CB OG1 sing N N 307 THR CB CG2 sing N N 308 THR CB HB sing N N 309 THR OG1 HG1 sing N N 310 THR CG2 HG21 sing N N 311 THR CG2 HG22 sing N N 312 THR CG2 HG23 sing N N 313 THR OXT HXT sing N N 314 TYR N CA sing N N 315 TYR N H sing N N 316 TYR N H2 sing N N 317 TYR CA C sing N N 318 TYR CA CB sing N N 319 TYR CA HA sing N N 320 TYR C O doub N N 321 TYR C OXT sing N N 322 TYR CB CG sing N N 323 TYR CB HB2 sing N N 324 TYR CB HB3 sing N N 325 TYR CG CD1 doub Y N 326 TYR CG CD2 sing Y N 327 TYR CD1 CE1 sing Y N 328 TYR CD1 HD1 sing N N 329 TYR CD2 CE2 doub Y N 330 TYR CD2 HD2 sing N N 331 TYR CE1 CZ doub Y N 332 TYR CE1 HE1 sing N N 333 TYR CE2 CZ sing Y N 334 TYR CE2 HE2 sing N N 335 TYR CZ OH sing N N 336 TYR OH HH sing N N 337 TYR OXT HXT sing N N 338 VAL N CA sing N N 339 VAL N H sing N N 340 VAL N H2 sing N N 341 VAL CA C sing N N 342 VAL CA CB sing N N 343 VAL CA HA sing N N 344 VAL C O doub N N 345 VAL C OXT sing N N 346 VAL CB CG1 sing N N 347 VAL CB CG2 sing N N 348 VAL CB HB sing N N 349 VAL CG1 HG11 sing N N 350 VAL CG1 HG12 sing N N 351 VAL CG1 HG13 sing N N 352 VAL CG2 HG21 sing N N 353 VAL CG2 HG22 sing N N 354 VAL CG2 HG23 sing N N 355 VAL OXT HXT sing N N 356 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1P5F _pdbx_initial_refinement_model.details ? #