data_3BKZ # _entry.id 3BKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3BKZ pdb_00003bkz 10.2210/pdb3bkz/pdb NDB PD1060 ? ? RCSB RCSB045649 ? ? WWPDB D_1000045649 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2FD8 'the same protein' unspecified PDB 2QXQ 'human homolog' unspecified # _pdbx_database_status.entry_id 3BKZ _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-12-09 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yi, C.' 1 'Yang, C.-G.' 2 'He, C.' 3 # _citation.id primary _citation.title 'Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA' _citation.journal_abbrev Nature _citation.journal_volume 452 _citation.page_first 961 _citation.page_last 965 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18432238 _citation.pdbx_database_id_DOI 10.1038/nature06889 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, C.-G.' 1 ? primary 'Yi, C.' 2 ? primary 'Duguid, E.M.' 3 ? primary 'Sullivan, C.T.' 4 ? primary 'Jian, X.' 5 ? primary 'Rice, P.A.' 6 ? primary 'He, C.' 7 ? # _cell.entry_id 3BKZ _cell.length_a 41.397 _cell.length_b 75.507 _cell.length_c 46.788 _cell.angle_alpha 90.00 _cell.angle_beta 105.45 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3BKZ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB' 22286.559 1 1.14.11.- D135C ? ? 2 polymer syn ;DNA (5'-D(*DTP*DAP*DGP*DGP*DTP*DAP*DAP*DCP*DAP*DTP*DCP*DGP*DT)-3') ; 4050.739 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*DAP*DAP*DCP*DGP*DAP*DTP*DAP*DTP*DTP*DAP*DCP*DCP*DT)-3') ; 3934.599 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 5 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? 6 water nat water 18.015 292 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB' # _entity_name_sys.entity_id 1 _entity_name_sys.name E.C.1.14.11.- # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMP QSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKCEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHG DVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGK ; ;PLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMP QSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKCEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHG DVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGK ; A ? 2 polydeoxyribonucleotide no yes '(DT)(DA)(DG)(DG)(DT)(DA)(DA)(2YR)(DA)(DT)(DC)(DG)(DT)' TAGGTAAXATCGT B ? 3 polydeoxyribonucleotide no no '(DA)(DA)(DC)(DG)(DA)(DT)(DA)(DT)(DT)(DA)(DC)(DC)(DT)' AACGATATTACCT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LEU n 1 3 ALA n 1 4 ALA n 1 5 GLY n 1 6 ALA n 1 7 VAL n 1 8 ILE n 1 9 LEU n 1 10 ARG n 1 11 ARG n 1 12 PHE n 1 13 ALA n 1 14 PHE n 1 15 ASN n 1 16 ALA n 1 17 ALA n 1 18 GLU n 1 19 GLN n 1 20 LEU n 1 21 ILE n 1 22 ARG n 1 23 ASP n 1 24 ILE n 1 25 ASN n 1 26 ASP n 1 27 VAL n 1 28 ALA n 1 29 SER n 1 30 GLN n 1 31 SER n 1 32 PRO n 1 33 PHE n 1 34 ARG n 1 35 GLN n 1 36 MET n 1 37 VAL n 1 38 THR n 1 39 PRO n 1 40 GLY n 1 41 GLY n 1 42 TYR n 1 43 THR n 1 44 MET n 1 45 SER n 1 46 VAL n 1 47 ALA n 1 48 MET n 1 49 THR n 1 50 ASN n 1 51 CYS n 1 52 GLY n 1 53 HIS n 1 54 LEU n 1 55 GLY n 1 56 TRP n 1 57 THR n 1 58 THR n 1 59 HIS n 1 60 ARG n 1 61 GLN n 1 62 GLY n 1 63 TYR n 1 64 LEU n 1 65 TYR n 1 66 SER n 1 67 PRO n 1 68 ILE n 1 69 ASP n 1 70 PRO n 1 71 GLN n 1 72 THR n 1 73 ASN n 1 74 LYS n 1 75 PRO n 1 76 TRP n 1 77 PRO n 1 78 ALA n 1 79 MET n 1 80 PRO n 1 81 GLN n 1 82 SER n 1 83 PHE n 1 84 HIS n 1 85 ASN n 1 86 LEU n 1 87 CYS n 1 88 GLN n 1 89 ARG n 1 90 ALA n 1 91 ALA n 1 92 THR n 1 93 ALA n 1 94 ALA n 1 95 GLY n 1 96 TYR n 1 97 PRO n 1 98 ASP n 1 99 PHE n 1 100 GLN n 1 101 PRO n 1 102 ASP n 1 103 ALA n 1 104 CYS n 1 105 LEU n 1 106 ILE n 1 107 ASN n 1 108 ARG n 1 109 TYR n 1 110 ALA n 1 111 PRO n 1 112 GLY n 1 113 ALA n 1 114 LYS n 1 115 LEU n 1 116 SER n 1 117 LEU n 1 118 HIS n 1 119 GLN n 1 120 ASP n 1 121 LYS n 1 122 CYS n 1 123 GLU n 1 124 PRO n 1 125 ASP n 1 126 LEU n 1 127 ARG n 1 128 ALA n 1 129 PRO n 1 130 ILE n 1 131 VAL n 1 132 SER n 1 133 VAL n 1 134 SER n 1 135 LEU n 1 136 GLY n 1 137 LEU n 1 138 PRO n 1 139 ALA n 1 140 ILE n 1 141 PHE n 1 142 GLN n 1 143 PHE n 1 144 GLY n 1 145 GLY n 1 146 LEU n 1 147 LYS n 1 148 ARG n 1 149 ASN n 1 150 ASP n 1 151 PRO n 1 152 LEU n 1 153 LYS n 1 154 ARG n 1 155 LEU n 1 156 LEU n 1 157 LEU n 1 158 GLU n 1 159 HIS n 1 160 GLY n 1 161 ASP n 1 162 VAL n 1 163 VAL n 1 164 VAL n 1 165 TRP n 1 166 GLY n 1 167 GLY n 1 168 GLU n 1 169 SER n 1 170 ARG n 1 171 LEU n 1 172 PHE n 1 173 TYR n 1 174 HIS n 1 175 GLY n 1 176 ILE n 1 177 GLN n 1 178 PRO n 1 179 LEU n 1 180 LYS n 1 181 ALA n 1 182 GLY n 1 183 PHE n 1 184 HIS n 1 185 PRO n 1 186 LEU n 1 187 THR n 1 188 ILE n 1 189 ASP n 1 190 CYS n 1 191 ARG n 1 192 TYR n 1 193 ASN n 1 194 LEU n 1 195 THR n 1 196 PHE n 1 197 ARG n 1 198 GLN n 1 199 ALA n 1 200 GLY n 1 201 LYS n 2 1 DT n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 DT n 2 6 DA n 2 7 DA n 2 8 2YR n 2 9 DA n 2 10 DT n 2 11 DC n 2 12 DG n 2 13 DT n 3 1 DA n 3 2 DA n 3 3 DC n 3 4 DG n 3 5 DA n 3 6 DT n 3 7 DA n 3 8 DT n 3 9 DT n 3 10 DA n 3 11 DC n 3 12 DC n 3 13 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene 'alkB, aidD' _entity_src_gen.gene_src_species 'Escherichia coli' _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli K12' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 UNP ALKB_ECOLI P05050 14 ;PLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMP QSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHG DVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGK ; ? 2 2 PDB 3BKZ 3BKZ 1 'TAGGTAA(2YR)ATCGT' ? 3 3 PDB 3BKZ 3BKZ 1 AACGATATTACCT ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3BKZ A 1 ? 201 ? P05050 14 ? 214 ? 14 214 2 2 3BKZ B 1 ? 13 ? 3BKZ 1 ? 13 ? 1 13 3 3 3BKZ C 1 ? 13 ? 3BKZ 1 ? 13 ? 1 13 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3BKZ _struct_ref_seq_dif.mon_id CYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 122 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P05050 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 135 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 135 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2YR non-polymer . ;2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate) ; ? 'C11 H18 N3 O7 P S' 367.315 AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3BKZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_percent_sol 47.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;20% PEG 5000, 0.1M sodium chloride, 25 mM magnesium chloride, 0.1M cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 5000' ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 1 'sodium Cacodylate' ? ? ? 1 5 2 'PEG 5000' ? ? ? 1 6 2 NaCl ? ? ? 1 7 2 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 3BKZ _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.59 _reflns.number_obs 36607 _reflns.number_all 36607 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.59 _reflns_shell.d_res_low 1.65 _reflns_shell.percent_possible_all 87.3 _reflns_shell.Rmerge_I_obs 0.366 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 2.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3BKZ _refine.ls_number_reflns_obs 31663 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 99.86 _refine.ls_R_factor_obs 0.18882 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18756 _refine.ls_R_factor_R_free 0.21236 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1663 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 22.876 _refine.aniso_B[1][1] -0.69 _refine.aniso_B[2][2] -0.40 _refine.aniso_B[3][3] 1.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.13 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.113 _refine.pdbx_overall_ESU_R_Free 0.104 _refine.overall_SU_ML 0.068 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.664 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1570 _refine_hist.pdbx_number_atoms_nucleic_acid 529 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 292 _refine_hist.number_atoms_total 2402 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.021 ? 2556 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.040 2.358 ? 3641 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.764 5.000 ? 206 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.848 22.838 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.434 15.000 ? 253 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.354 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.061 0.200 ? 395 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1712 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.172 0.200 ? 952 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.297 0.200 ? 1589 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.094 0.200 ? 259 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.099 0.200 ? 40 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.063 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.365 1.500 ? 1052 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.530 2.000 ? 1649 'X-RAY DIFFRACTION' ? r_scbond_it 0.618 3.000 ? 1971 'X-RAY DIFFRACTION' ? r_scangle_it 0.984 4.500 ? 1992 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.650 _refine_ls_shell.d_res_low 1.693 _refine_ls_shell.number_reflns_R_work 2264 _refine_ls_shell.R_factor_R_work 0.256 _refine_ls_shell.percent_reflns_obs 99.01 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 128 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3BKZ _struct.title 'X-ray structure of E coli AlkB crosslinked to dsDNA in the active site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3BKZ _struct_keywords.pdbx_keywords 'DNA REPAIR,OXIDOREDUCTASE/DNA' _struct_keywords.text 'alkylation repair, protein DNA interaction, cross-linking, dioxygenase, DNA REPAIR, OXIDOREDUCTASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 16 ? SER A 31 ? ALA A 29 SER A 44 1 ? 16 HELX_P HELX_P2 2 PRO A 80 ? ALA A 94 ? PRO A 93 ALA A 107 1 ? 15 HELX_P HELX_P3 3 GLY A 166 ? ARG A 170 ? GLY A 179 ARG A 183 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CYS 122 SG ? ? ? 1_555 B 2YR 8 S ? ? A CYS 135 B 2YR 8 1_555 ? ? ? ? ? ? ? 2.027 ? ? covale2 covale both ? B DA 7 "O3'" A ? ? 1_555 B 2YR 8 P ? ? B DA 7 B 2YR 8 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale3 covale both ? B DA 7 "O3'" B ? ? 1_555 B 2YR 8 P ? ? B DA 7 B 2YR 8 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale4 covale both ? B 2YR 8 "O3'" ? ? ? 1_555 B DA 9 P ? ? B 2YR 8 B DA 9 1_555 ? ? ? ? ? ? ? 1.599 ? ? metalc1 metalc ? ? A HIS 118 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 131 A MN 501 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc2 metalc ? ? A ASP 120 OD1 ? ? ? 1_555 D MN . MN ? ? A ASP 133 A MN 501 1_555 ? ? ? ? ? ? ? 2.218 ? ? metalc3 metalc ? ? A HIS 174 NE2 ? ? ? 1_555 D MN . MN ? ? A HIS 187 A MN 501 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc4 metalc ? ? D MN . MN ? ? ? 1_555 E AKG . O2 ? ? A MN 501 A AKG 502 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc5 metalc ? ? D MN . MN ? ? ? 1_555 E AKG . O5 ? ? A MN 501 A AKG 502 1_555 ? ? ? ? ? ? ? 2.317 ? ? metalc6 metalc ? ? D MN . MN ? ? ? 1_555 F HOH . O ? ? A MN 501 A HOH 625 1_555 ? ? ? ? ? ? ? 2.296 ? ? hydrog1 hydrog ? ? B DA 2 N1 A ? ? 1_555 C DT 13 N3 A ? B DA 2 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 2 N6 A ? ? 1_555 C DT 13 O4 A ? B DA 2 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 N1 A ? ? 1_555 C DC 12 N3 A ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N2 A ? ? 1_555 C DC 12 O2 A ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 O6 A ? ? 1_555 C DC 12 N4 A ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N2 A ? ? 1_555 C DT 13 O2 A ? B DG 3 C DT 13 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog7 hydrog ? ? B DG 4 N1 A ? ? 1_555 C DC 11 N3 A ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 N2 A ? ? 1_555 C DC 11 O2 A ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 O6 A ? ? 1_555 C DC 11 N4 A ? B DG 4 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 N3 A ? ? 1_555 C DA 10 N1 A ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 5 O4 A ? ? 1_555 C DA 10 N6 A ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N1 A ? ? 1_555 C DT 9 N3 A ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N6 A ? ? 1_555 C DT 9 O4 A ? B DA 6 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 7 N6 A ? ? 1_555 C DA 7 N1 A ? B DA 7 C DA 7 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog15 hydrog ? ? B DA 7 N7 A ? ? 1_555 C DA 7 N6 A ? B DA 7 C DA 7 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog16 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 6 N3 A ? B DA 9 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 6 O4 A ? B DA 9 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 10 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 10 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 4 N1 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 4 O6 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 4 N2 ? ? B DC 11 C DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 13 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 13 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 13 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 13 C DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? LEU A 9 ? VAL A 20 LEU A 22 A 2 VAL A 162 ? TRP A 165 ? VAL A 175 TRP A 178 A 3 ILE A 130 ? GLY A 136 ? ILE A 143 GLY A 149 A 4 ARG A 191 ? PHE A 196 ? ARG A 204 PHE A 209 A 5 ALA A 103 ? TYR A 109 ? ALA A 116 TYR A 122 A 6 ALA A 47 ? GLY A 52 ? ALA A 60 GLY A 65 B 1 GLY A 55 ? THR A 58 ? GLY A 68 THR A 71 B 2 TYR A 63 ? SER A 66 ? TYR A 76 SER A 79 C 1 LEU A 115 ? HIS A 118 ? LEU A 128 HIS A 131 C 2 HIS A 174 ? ILE A 176 ? HIS A 187 ILE A 189 C 3 ALA A 139 ? PHE A 143 ? ALA A 152 PHE A 156 C 4 LYS A 153 ? LEU A 157 ? LYS A 166 LEU A 170 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 9 ? N LEU A 22 O VAL A 162 ? O VAL A 175 A 2 3 O VAL A 163 ? O VAL A 176 N SER A 132 ? N SER A 145 A 3 4 N VAL A 131 ? N VAL A 144 O PHE A 196 ? O PHE A 209 A 4 5 O ARG A 191 ? O ARG A 204 N TYR A 109 ? N TYR A 122 A 5 6 O ARG A 108 ? O ARG A 121 N ALA A 47 ? N ALA A 60 B 1 2 N THR A 57 ? N THR A 70 O LEU A 64 ? O LEU A 77 C 1 2 N LEU A 115 ? N LEU A 128 O ILE A 176 ? O ILE A 189 C 2 3 O GLY A 175 ? O GLY A 188 N GLN A 142 ? N GLN A 155 C 3 4 N PHE A 141 ? N PHE A 154 O LEU A 155 ? O LEU A 168 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 501 ? 5 'BINDING SITE FOR RESIDUE MN A 501' AC2 Software A AKG 502 ? 15 'BINDING SITE FOR RESIDUE AKG A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 118 ? HIS A 131 . ? 1_555 ? 2 AC1 5 ASP A 120 ? ASP A 133 . ? 1_555 ? 3 AC1 5 HIS A 174 ? HIS A 187 . ? 1_555 ? 4 AC1 5 AKG E . ? AKG A 502 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 625 . ? 1_555 ? 6 AC2 15 LEU A 105 ? LEU A 118 . ? 1_555 ? 7 AC2 15 ASN A 107 ? ASN A 120 . ? 1_555 ? 8 AC2 15 TYR A 109 ? TYR A 122 . ? 1_555 ? 9 AC2 15 LEU A 115 ? LEU A 128 . ? 1_555 ? 10 AC2 15 HIS A 118 ? HIS A 131 . ? 1_555 ? 11 AC2 15 ASP A 120 ? ASP A 133 . ? 1_555 ? 12 AC2 15 HIS A 174 ? HIS A 187 . ? 1_555 ? 13 AC2 15 ILE A 176 ? ILE A 189 . ? 1_555 ? 14 AC2 15 ARG A 191 ? ARG A 204 . ? 1_555 ? 15 AC2 15 ASN A 193 ? ASN A 206 . ? 1_555 ? 16 AC2 15 ARG A 197 ? ARG A 210 . ? 1_555 ? 17 AC2 15 MN D . ? MN A 501 . ? 1_555 ? 18 AC2 15 HOH F . ? HOH A 610 . ? 1_555 ? 19 AC2 15 HOH F . ? HOH A 625 . ? 1_555 ? 20 AC2 15 HOH G . ? HOH B 103 . ? 1_555 ? # _atom_sites.entry_id 3BKZ _atom_sites.fract_transf_matrix[1][1] 0.024156 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006676 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013244 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022174 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 14 14 PRO PRO A . n A 1 2 LEU 2 15 15 LEU LEU A . n A 1 3 ALA 3 16 16 ALA ALA A . n A 1 4 ALA 4 17 17 ALA ALA A . n A 1 5 GLY 5 18 18 GLY GLY A . n A 1 6 ALA 6 19 19 ALA ALA A . n A 1 7 VAL 7 20 20 VAL VAL A . n A 1 8 ILE 8 21 21 ILE ILE A . n A 1 9 LEU 9 22 22 LEU LEU A . n A 1 10 ARG 10 23 23 ARG ARG A . n A 1 11 ARG 11 24 24 ARG ARG A . n A 1 12 PHE 12 25 25 PHE PHE A . n A 1 13 ALA 13 26 26 ALA ALA A . n A 1 14 PHE 14 27 27 PHE PHE A . n A 1 15 ASN 15 28 28 ASN ASN A . n A 1 16 ALA 16 29 29 ALA ALA A . n A 1 17 ALA 17 30 30 ALA ALA A . n A 1 18 GLU 18 31 31 GLU GLU A . n A 1 19 GLN 19 32 32 GLN GLN A . n A 1 20 LEU 20 33 33 LEU LEU A . n A 1 21 ILE 21 34 34 ILE ILE A . n A 1 22 ARG 22 35 35 ARG ARG A . n A 1 23 ASP 23 36 36 ASP ASP A . n A 1 24 ILE 24 37 37 ILE ILE A . n A 1 25 ASN 25 38 38 ASN ASN A . n A 1 26 ASP 26 39 39 ASP ASP A . n A 1 27 VAL 27 40 40 VAL VAL A . n A 1 28 ALA 28 41 41 ALA ALA A . n A 1 29 SER 29 42 42 SER SER A . n A 1 30 GLN 30 43 43 GLN GLN A . n A 1 31 SER 31 44 44 SER SER A . n A 1 32 PRO 32 45 45 PRO PRO A . n A 1 33 PHE 33 46 46 PHE PHE A . n A 1 34 ARG 34 47 47 ARG ARG A . n A 1 35 GLN 35 48 48 GLN GLN A . n A 1 36 MET 36 49 49 MET MET A . n A 1 37 VAL 37 50 50 VAL VAL A . n A 1 38 THR 38 51 51 THR THR A . n A 1 39 PRO 39 52 52 PRO PRO A . n A 1 40 GLY 40 53 53 GLY GLY A . n A 1 41 GLY 41 54 54 GLY GLY A . n A 1 42 TYR 42 55 55 TYR TYR A . n A 1 43 THR 43 56 56 THR THR A . n A 1 44 MET 44 57 57 MET MET A . n A 1 45 SER 45 58 58 SER SER A . n A 1 46 VAL 46 59 59 VAL VAL A . n A 1 47 ALA 47 60 60 ALA ALA A . n A 1 48 MET 48 61 61 MET MET A . n A 1 49 THR 49 62 62 THR THR A . n A 1 50 ASN 50 63 63 ASN ASN A . n A 1 51 CYS 51 64 64 CYS CYS A . n A 1 52 GLY 52 65 65 GLY GLY A . n A 1 53 HIS 53 66 66 HIS HIS A . n A 1 54 LEU 54 67 67 LEU LEU A . n A 1 55 GLY 55 68 68 GLY GLY A . n A 1 56 TRP 56 69 69 TRP TRP A . n A 1 57 THR 57 70 70 THR THR A . n A 1 58 THR 58 71 71 THR THR A . n A 1 59 HIS 59 72 72 HIS HIS A . n A 1 60 ARG 60 73 73 ARG ARG A . n A 1 61 GLN 61 74 74 GLN GLN A . n A 1 62 GLY 62 75 75 GLY GLY A . n A 1 63 TYR 63 76 76 TYR TYR A . n A 1 64 LEU 64 77 77 LEU LEU A . n A 1 65 TYR 65 78 78 TYR TYR A . n A 1 66 SER 66 79 79 SER SER A . n A 1 67 PRO 67 80 80 PRO PRO A . n A 1 68 ILE 68 81 81 ILE ILE A . n A 1 69 ASP 69 82 82 ASP ASP A . n A 1 70 PRO 70 83 83 PRO PRO A . n A 1 71 GLN 71 84 84 GLN GLN A . n A 1 72 THR 72 85 85 THR THR A . n A 1 73 ASN 73 86 86 ASN ASN A . n A 1 74 LYS 74 87 87 LYS LYS A . n A 1 75 PRO 75 88 88 PRO PRO A . n A 1 76 TRP 76 89 89 TRP TRP A . n A 1 77 PRO 77 90 90 PRO PRO A . n A 1 78 ALA 78 91 91 ALA ALA A . n A 1 79 MET 79 92 92 MET MET A . n A 1 80 PRO 80 93 93 PRO PRO A . n A 1 81 GLN 81 94 94 GLN GLN A . n A 1 82 SER 82 95 95 SER SER A . n A 1 83 PHE 83 96 96 PHE PHE A . n A 1 84 HIS 84 97 97 HIS HIS A . n A 1 85 ASN 85 98 98 ASN ASN A . n A 1 86 LEU 86 99 99 LEU LEU A . n A 1 87 CYS 87 100 100 CYS CYS A . n A 1 88 GLN 88 101 101 GLN GLN A . n A 1 89 ARG 89 102 102 ARG ARG A . n A 1 90 ALA 90 103 103 ALA ALA A . n A 1 91 ALA 91 104 104 ALA ALA A . n A 1 92 THR 92 105 105 THR THR A . n A 1 93 ALA 93 106 106 ALA ALA A . n A 1 94 ALA 94 107 107 ALA ALA A . n A 1 95 GLY 95 108 108 GLY GLY A . n A 1 96 TYR 96 109 109 TYR TYR A . n A 1 97 PRO 97 110 110 PRO PRO A . n A 1 98 ASP 98 111 111 ASP ASP A . n A 1 99 PHE 99 112 112 PHE PHE A . n A 1 100 GLN 100 113 113 GLN GLN A . n A 1 101 PRO 101 114 114 PRO PRO A . n A 1 102 ASP 102 115 115 ASP ASP A . n A 1 103 ALA 103 116 116 ALA ALA A . n A 1 104 CYS 104 117 117 CYS CYS A . n A 1 105 LEU 105 118 118 LEU LEU A . n A 1 106 ILE 106 119 119 ILE ILE A . n A 1 107 ASN 107 120 120 ASN ASN A . n A 1 108 ARG 108 121 121 ARG ARG A . n A 1 109 TYR 109 122 122 TYR TYR A . n A 1 110 ALA 110 123 123 ALA ALA A . n A 1 111 PRO 111 124 124 PRO PRO A . n A 1 112 GLY 112 125 125 GLY GLY A . n A 1 113 ALA 113 126 126 ALA ALA A . n A 1 114 LYS 114 127 127 LYS LYS A . n A 1 115 LEU 115 128 128 LEU LEU A . n A 1 116 SER 116 129 129 SER SER A . n A 1 117 LEU 117 130 130 LEU LEU A . n A 1 118 HIS 118 131 131 HIS HIS A . n A 1 119 GLN 119 132 132 GLN GLN A . n A 1 120 ASP 120 133 133 ASP ASP A . n A 1 121 LYS 121 134 134 LYS LYS A . n A 1 122 CYS 122 135 135 CYS CYS A . n A 1 123 GLU 123 136 136 GLU GLU A . n A 1 124 PRO 124 137 137 PRO PRO A . n A 1 125 ASP 125 138 138 ASP ASP A . n A 1 126 LEU 126 139 139 LEU LEU A . n A 1 127 ARG 127 140 140 ARG ARG A . n A 1 128 ALA 128 141 141 ALA ALA A . n A 1 129 PRO 129 142 142 PRO PRO A . n A 1 130 ILE 130 143 143 ILE ILE A . n A 1 131 VAL 131 144 144 VAL VAL A . n A 1 132 SER 132 145 145 SER SER A . n A 1 133 VAL 133 146 146 VAL VAL A . n A 1 134 SER 134 147 147 SER SER A . n A 1 135 LEU 135 148 148 LEU LEU A . n A 1 136 GLY 136 149 149 GLY GLY A . n A 1 137 LEU 137 150 150 LEU LEU A . n A 1 138 PRO 138 151 151 PRO PRO A . n A 1 139 ALA 139 152 152 ALA ALA A . n A 1 140 ILE 140 153 153 ILE ILE A . n A 1 141 PHE 141 154 154 PHE PHE A . n A 1 142 GLN 142 155 155 GLN GLN A . n A 1 143 PHE 143 156 156 PHE PHE A . n A 1 144 GLY 144 157 157 GLY GLY A . n A 1 145 GLY 145 158 158 GLY GLY A . n A 1 146 LEU 146 159 159 LEU LEU A . n A 1 147 LYS 147 160 160 LYS LYS A . n A 1 148 ARG 148 161 161 ARG ARG A . n A 1 149 ASN 149 162 162 ASN ASN A . n A 1 150 ASP 150 163 163 ASP ASP A . n A 1 151 PRO 151 164 164 PRO PRO A . n A 1 152 LEU 152 165 165 LEU LEU A . n A 1 153 LYS 153 166 166 LYS LYS A . n A 1 154 ARG 154 167 167 ARG ARG A . n A 1 155 LEU 155 168 168 LEU LEU A . n A 1 156 LEU 156 169 169 LEU LEU A . n A 1 157 LEU 157 170 170 LEU LEU A . n A 1 158 GLU 158 171 171 GLU GLU A . n A 1 159 HIS 159 172 172 HIS HIS A . n A 1 160 GLY 160 173 173 GLY GLY A . n A 1 161 ASP 161 174 174 ASP ASP A . n A 1 162 VAL 162 175 175 VAL VAL A . n A 1 163 VAL 163 176 176 VAL VAL A . n A 1 164 VAL 164 177 177 VAL VAL A . n A 1 165 TRP 165 178 178 TRP TRP A . n A 1 166 GLY 166 179 179 GLY GLY A . n A 1 167 GLY 167 180 180 GLY GLY A . n A 1 168 GLU 168 181 181 GLU GLU A . n A 1 169 SER 169 182 182 SER SER A . n A 1 170 ARG 170 183 183 ARG ARG A . n A 1 171 LEU 171 184 184 LEU LEU A . n A 1 172 PHE 172 185 185 PHE PHE A . n A 1 173 TYR 173 186 186 TYR TYR A . n A 1 174 HIS 174 187 187 HIS HIS A . n A 1 175 GLY 175 188 188 GLY GLY A . n A 1 176 ILE 176 189 189 ILE ILE A . n A 1 177 GLN 177 190 190 GLN GLN A . n A 1 178 PRO 178 191 191 PRO PRO A . n A 1 179 LEU 179 192 192 LEU LEU A . n A 1 180 LYS 180 193 193 LYS LYS A . n A 1 181 ALA 181 194 194 ALA ALA A . n A 1 182 GLY 182 195 195 GLY GLY A . n A 1 183 PHE 183 196 196 PHE PHE A . n A 1 184 HIS 184 197 197 HIS HIS A . n A 1 185 PRO 185 198 198 PRO PRO A . n A 1 186 LEU 186 199 199 LEU LEU A . n A 1 187 THR 187 200 200 THR THR A . n A 1 188 ILE 188 201 201 ILE ILE A . n A 1 189 ASP 189 202 202 ASP ASP A . n A 1 190 CYS 190 203 203 CYS CYS A . n A 1 191 ARG 191 204 204 ARG ARG A . n A 1 192 TYR 192 205 205 TYR TYR A . n A 1 193 ASN 193 206 206 ASN ASN A . n A 1 194 LEU 194 207 207 LEU LEU A . n A 1 195 THR 195 208 208 THR THR A . n A 1 196 PHE 196 209 209 PHE PHE A . n A 1 197 ARG 197 210 210 ARG ARG A . n A 1 198 GLN 198 211 211 GLN GLN A . n A 1 199 ALA 199 212 212 ALA ALA A . n A 1 200 GLY 200 213 213 GLY GLY A . n A 1 201 LYS 201 214 214 LYS LYS A . n B 2 1 DT 1 1 1 DT T B . n B 2 2 DA 2 2 2 DA A B . n B 2 3 DG 3 3 3 DG G B . n B 2 4 DG 4 4 4 DG G B . n B 2 5 DT 5 5 5 DT T B . n B 2 6 DA 6 6 6 DA A B . n B 2 7 DA 7 7 7 DA A B . n B 2 8 2YR 8 8 8 2YR C B . n B 2 9 DA 9 9 9 DA A B . n B 2 10 DT 10 10 10 DT T B . n B 2 11 DC 11 11 11 DC C B . n B 2 12 DG 12 12 12 DG G B . n B 2 13 DT 13 13 13 DT T B . n C 3 1 DA 1 1 1 DA A C . n C 3 2 DA 2 2 2 DA A C . n C 3 3 DC 3 3 3 DC C C . n C 3 4 DG 4 4 4 DG G C . n C 3 5 DA 5 5 5 DA A C . n C 3 6 DT 6 6 6 DT T C . n C 3 7 DA 7 7 7 DA A C . n C 3 8 DT 8 8 8 DT T C . n C 3 9 DT 9 9 9 DT T C . n C 3 10 DA 10 10 10 DA A C . n C 3 11 DC 11 11 11 DC C C . n C 3 12 DC 12 12 12 DC C C . n C 3 13 DT 13 13 13 DT T C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 501 501 MN MN A . E 5 AKG 1 502 601 AKG AKG A . F 6 HOH 1 601 801 HOH HOH A . F 6 HOH 2 602 803 HOH HOH A . F 6 HOH 3 603 804 HOH HOH A . F 6 HOH 4 604 805 HOH HOH A . F 6 HOH 5 605 806 HOH HOH A . F 6 HOH 6 606 807 HOH HOH A . F 6 HOH 7 607 809 HOH HOH A . F 6 HOH 8 608 812 HOH HOH A . F 6 HOH 9 609 813 HOH HOH A . F 6 HOH 10 610 815 HOH HOH A . F 6 HOH 11 611 816 HOH HOH A . F 6 HOH 12 612 817 HOH HOH A . F 6 HOH 13 613 818 HOH HOH A . F 6 HOH 14 614 819 HOH HOH A . F 6 HOH 15 615 820 HOH HOH A . F 6 HOH 16 616 821 HOH HOH A . F 6 HOH 17 617 822 HOH HOH A . F 6 HOH 18 618 823 HOH HOH A . F 6 HOH 19 619 824 HOH HOH A . F 6 HOH 20 620 825 HOH HOH A . F 6 HOH 21 621 826 HOH HOH A . F 6 HOH 22 622 827 HOH HOH A . F 6 HOH 23 623 828 HOH HOH A . F 6 HOH 24 624 829 HOH HOH A . F 6 HOH 25 625 831 HOH HOH A . F 6 HOH 26 626 832 HOH HOH A . F 6 HOH 27 627 833 HOH HOH A . F 6 HOH 28 628 836 HOH HOH A . F 6 HOH 29 629 837 HOH HOH A . F 6 HOH 30 630 839 HOH HOH A . F 6 HOH 31 631 840 HOH HOH A . F 6 HOH 32 632 841 HOH HOH A . F 6 HOH 33 633 843 HOH HOH A . F 6 HOH 34 634 844 HOH HOH A . F 6 HOH 35 635 845 HOH HOH A . F 6 HOH 36 636 846 HOH HOH A . F 6 HOH 37 637 847 HOH HOH A . F 6 HOH 38 638 849 HOH HOH A . F 6 HOH 39 639 850 HOH HOH A . F 6 HOH 40 640 851 HOH HOH A . F 6 HOH 41 641 852 HOH HOH A . F 6 HOH 42 642 853 HOH HOH A . F 6 HOH 43 643 854 HOH HOH A . F 6 HOH 44 644 855 HOH HOH A . F 6 HOH 45 645 856 HOH HOH A . F 6 HOH 46 646 857 HOH HOH A . F 6 HOH 47 647 858 HOH HOH A . F 6 HOH 48 648 859 HOH HOH A . F 6 HOH 49 649 860 HOH HOH A . F 6 HOH 50 650 861 HOH HOH A . F 6 HOH 51 651 862 HOH HOH A . F 6 HOH 52 652 863 HOH HOH A . F 6 HOH 53 653 864 HOH HOH A . F 6 HOH 54 654 865 HOH HOH A . F 6 HOH 55 655 866 HOH HOH A . F 6 HOH 56 656 867 HOH HOH A . F 6 HOH 57 657 868 HOH HOH A . F 6 HOH 58 658 869 HOH HOH A . F 6 HOH 59 659 873 HOH HOH A . F 6 HOH 60 660 875 HOH HOH A . F 6 HOH 61 661 876 HOH HOH A . F 6 HOH 62 662 877 HOH HOH A . F 6 HOH 63 663 879 HOH HOH A . F 6 HOH 64 664 880 HOH HOH A . F 6 HOH 65 665 882 HOH HOH A . F 6 HOH 66 666 884 HOH HOH A . F 6 HOH 67 667 885 HOH HOH A . F 6 HOH 68 668 886 HOH HOH A . F 6 HOH 69 669 887 HOH HOH A . F 6 HOH 70 670 888 HOH HOH A . F 6 HOH 71 671 890 HOH HOH A . F 6 HOH 72 672 891 HOH HOH A . F 6 HOH 73 673 892 HOH HOH A . F 6 HOH 74 674 894 HOH HOH A . F 6 HOH 75 675 895 HOH HOH A . F 6 HOH 76 676 896 HOH HOH A . F 6 HOH 77 677 897 HOH HOH A . F 6 HOH 78 678 899 HOH HOH A . F 6 HOH 79 679 900 HOH HOH A . F 6 HOH 80 680 901 HOH HOH A . F 6 HOH 81 681 902 HOH HOH A . F 6 HOH 82 682 903 HOH HOH A . F 6 HOH 83 683 904 HOH HOH A . F 6 HOH 84 684 905 HOH HOH A . F 6 HOH 85 685 906 HOH HOH A . F 6 HOH 86 686 907 HOH HOH A . F 6 HOH 87 687 908 HOH HOH A . F 6 HOH 88 688 910 HOH HOH A . F 6 HOH 89 689 911 HOH HOH A . F 6 HOH 90 690 913 HOH HOH A . F 6 HOH 91 691 914 HOH HOH A . F 6 HOH 92 692 915 HOH HOH A . F 6 HOH 93 693 916 HOH HOH A . F 6 HOH 94 694 917 HOH HOH A . F 6 HOH 95 695 919 HOH HOH A . F 6 HOH 96 696 920 HOH HOH A . F 6 HOH 97 697 921 HOH HOH A . F 6 HOH 98 698 922 HOH HOH A . F 6 HOH 99 699 924 HOH HOH A . F 6 HOH 100 700 925 HOH HOH A . F 6 HOH 101 701 926 HOH HOH A . F 6 HOH 102 702 927 HOH HOH A . F 6 HOH 103 703 928 HOH HOH A . F 6 HOH 104 704 929 HOH HOH A . F 6 HOH 105 705 931 HOH HOH A . F 6 HOH 106 706 932 HOH HOH A . F 6 HOH 107 707 933 HOH HOH A . F 6 HOH 108 708 936 HOH HOH A . F 6 HOH 109 709 937 HOH HOH A . F 6 HOH 110 710 938 HOH HOH A . F 6 HOH 111 711 939 HOH HOH A . F 6 HOH 112 712 941 HOH HOH A . F 6 HOH 113 713 943 HOH HOH A . F 6 HOH 114 714 944 HOH HOH A . F 6 HOH 115 715 945 HOH HOH A . F 6 HOH 116 716 946 HOH HOH A . F 6 HOH 117 717 947 HOH HOH A . F 6 HOH 118 718 949 HOH HOH A . F 6 HOH 119 719 950 HOH HOH A . F 6 HOH 120 720 951 HOH HOH A . F 6 HOH 121 721 952 HOH HOH A . F 6 HOH 122 722 953 HOH HOH A . F 6 HOH 123 723 954 HOH HOH A . F 6 HOH 124 724 955 HOH HOH A . F 6 HOH 125 725 956 HOH HOH A . F 6 HOH 126 726 957 HOH HOH A . F 6 HOH 127 727 958 HOH HOH A . F 6 HOH 128 728 959 HOH HOH A . F 6 HOH 129 729 960 HOH HOH A . F 6 HOH 130 730 962 HOH HOH A . F 6 HOH 131 731 963 HOH HOH A . F 6 HOH 132 732 965 HOH HOH A . F 6 HOH 133 733 966 HOH HOH A . F 6 HOH 134 734 968 HOH HOH A . F 6 HOH 135 735 969 HOH HOH A . F 6 HOH 136 736 970 HOH HOH A . F 6 HOH 137 737 971 HOH HOH A . F 6 HOH 138 738 972 HOH HOH A . F 6 HOH 139 739 973 HOH HOH A . F 6 HOH 140 740 977 HOH HOH A . F 6 HOH 141 741 978 HOH HOH A . F 6 HOH 142 742 980 HOH HOH A . F 6 HOH 143 743 981 HOH HOH A . F 6 HOH 144 744 982 HOH HOH A . F 6 HOH 145 745 983 HOH HOH A . F 6 HOH 146 746 986 HOH HOH A . F 6 HOH 147 747 987 HOH HOH A . F 6 HOH 148 748 988 HOH HOH A . F 6 HOH 149 749 990 HOH HOH A . F 6 HOH 150 750 991 HOH HOH A . F 6 HOH 151 751 992 HOH HOH A . F 6 HOH 152 752 994 HOH HOH A . F 6 HOH 153 753 995 HOH HOH A . F 6 HOH 154 754 996 HOH HOH A . F 6 HOH 155 755 997 HOH HOH A . F 6 HOH 156 756 999 HOH HOH A . F 6 HOH 157 757 1001 HOH HOH A . F 6 HOH 158 758 1002 HOH HOH A . F 6 HOH 159 759 1003 HOH HOH A . F 6 HOH 160 760 1004 HOH HOH A . F 6 HOH 161 761 1005 HOH HOH A . F 6 HOH 162 762 1006 HOH HOH A . F 6 HOH 163 763 1007 HOH HOH A . F 6 HOH 164 764 1008 HOH HOH A . F 6 HOH 165 765 1010 HOH HOH A . F 6 HOH 166 766 1011 HOH HOH A . F 6 HOH 167 767 1012 HOH HOH A . F 6 HOH 168 768 1013 HOH HOH A . F 6 HOH 169 769 1014 HOH HOH A . F 6 HOH 170 770 1016 HOH HOH A . F 6 HOH 171 771 1023 HOH HOH A . F 6 HOH 172 772 1025 HOH HOH A . F 6 HOH 173 773 1028 HOH HOH A . F 6 HOH 174 774 1031 HOH HOH A . F 6 HOH 175 775 1035 HOH HOH A . F 6 HOH 176 776 1037 HOH HOH A . F 6 HOH 177 777 1038 HOH HOH A . F 6 HOH 178 778 1039 HOH HOH A . F 6 HOH 179 779 1042 HOH HOH A . F 6 HOH 180 780 1043 HOH HOH A . F 6 HOH 181 781 1044 HOH HOH A . F 6 HOH 182 782 1045 HOH HOH A . F 6 HOH 183 783 1046 HOH HOH A . F 6 HOH 184 784 1047 HOH HOH A . F 6 HOH 185 785 1048 HOH HOH A . F 6 HOH 186 786 1049 HOH HOH A . F 6 HOH 187 787 1050 HOH HOH A . F 6 HOH 188 788 1051 HOH HOH A . F 6 HOH 189 789 1052 HOH HOH A . F 6 HOH 190 790 1053 HOH HOH A . F 6 HOH 191 791 1054 HOH HOH A . F 6 HOH 192 792 1055 HOH HOH A . F 6 HOH 193 793 1056 HOH HOH A . F 6 HOH 194 794 1057 HOH HOH A . F 6 HOH 195 795 1060 HOH HOH A . F 6 HOH 196 796 1061 HOH HOH A . F 6 HOH 197 797 1062 HOH HOH A . F 6 HOH 198 798 1063 HOH HOH A . F 6 HOH 199 799 1064 HOH HOH A . F 6 HOH 200 800 1069 HOH HOH A . F 6 HOH 201 801 1070 HOH HOH A . F 6 HOH 202 802 1071 HOH HOH A . F 6 HOH 203 803 1072 HOH HOH A . F 6 HOH 204 804 1073 HOH HOH A . F 6 HOH 205 805 1074 HOH HOH A . F 6 HOH 206 806 1075 HOH HOH A . F 6 HOH 207 807 1076 HOH HOH A . F 6 HOH 208 808 1077 HOH HOH A . F 6 HOH 209 809 1078 HOH HOH A . F 6 HOH 210 810 1083 HOH HOH A . F 6 HOH 211 811 1084 HOH HOH A . F 6 HOH 212 812 1086 HOH HOH A . F 6 HOH 213 813 1089 HOH HOH A . F 6 HOH 214 814 1092 HOH HOH A . F 6 HOH 215 815 1093 HOH HOH A . G 6 HOH 1 101 976 HOH HOH B . G 6 HOH 2 102 802 HOH HOH B . G 6 HOH 3 103 808 HOH HOH B . G 6 HOH 4 104 810 HOH HOH B . G 6 HOH 5 105 811 HOH HOH B . G 6 HOH 6 106 814 HOH HOH B . G 6 HOH 7 107 830 HOH HOH B . G 6 HOH 8 108 834 HOH HOH B . G 6 HOH 9 109 835 HOH HOH B . G 6 HOH 10 110 842 HOH HOH B . G 6 HOH 11 111 870 HOH HOH B . G 6 HOH 12 112 871 HOH HOH B . G 6 HOH 13 113 872 HOH HOH B . G 6 HOH 14 114 874 HOH HOH B . G 6 HOH 15 115 878 HOH HOH B . G 6 HOH 16 116 883 HOH HOH B . G 6 HOH 17 117 893 HOH HOH B . G 6 HOH 18 118 909 HOH HOH B . G 6 HOH 19 119 912 HOH HOH B . G 6 HOH 20 120 918 HOH HOH B . G 6 HOH 21 121 935 HOH HOH B . G 6 HOH 22 122 940 HOH HOH B . G 6 HOH 23 123 942 HOH HOH B . G 6 HOH 24 124 948 HOH HOH B . G 6 HOH 25 125 961 HOH HOH B . G 6 HOH 26 126 974 HOH HOH B . G 6 HOH 27 127 989 HOH HOH B . G 6 HOH 28 128 998 HOH HOH B . G 6 HOH 29 129 1015 HOH HOH B . G 6 HOH 30 130 1021 HOH HOH B . G 6 HOH 31 131 1022 HOH HOH B . G 6 HOH 32 132 1026 HOH HOH B . G 6 HOH 33 133 1032 HOH HOH B . G 6 HOH 34 134 1034 HOH HOH B . G 6 HOH 35 135 1059 HOH HOH B . G 6 HOH 36 136 1066 HOH HOH B . G 6 HOH 37 137 1067 HOH HOH B . G 6 HOH 38 138 1079 HOH HOH B . G 6 HOH 39 139 1080 HOH HOH B . G 6 HOH 40 140 1081 HOH HOH B . G 6 HOH 41 141 1082 HOH HOH B . G 6 HOH 42 142 1085 HOH HOH B . G 6 HOH 43 143 1087 HOH HOH B . G 6 HOH 44 144 1088 HOH HOH B . G 6 HOH 45 145 1090 HOH HOH B . G 6 HOH 46 146 1091 HOH HOH B . H 6 HOH 1 101 985 HOH HOH C . H 6 HOH 2 102 881 HOH HOH C . H 6 HOH 3 103 838 HOH HOH C . H 6 HOH 4 104 848 HOH HOH C . H 6 HOH 5 105 889 HOH HOH C . H 6 HOH 6 106 898 HOH HOH C . H 6 HOH 7 107 923 HOH HOH C . H 6 HOH 8 108 930 HOH HOH C . H 6 HOH 9 109 934 HOH HOH C . H 6 HOH 10 110 964 HOH HOH C . H 6 HOH 11 111 967 HOH HOH C . H 6 HOH 12 112 975 HOH HOH C . H 6 HOH 13 113 979 HOH HOH C . H 6 HOH 14 114 984 HOH HOH C . H 6 HOH 15 115 993 HOH HOH C . H 6 HOH 16 116 1000 HOH HOH C . H 6 HOH 17 117 1009 HOH HOH C . H 6 HOH 18 118 1017 HOH HOH C . H 6 HOH 19 119 1018 HOH HOH C . H 6 HOH 20 120 1020 HOH HOH C . H 6 HOH 21 121 1024 HOH HOH C . H 6 HOH 22 122 1027 HOH HOH C . H 6 HOH 23 123 1029 HOH HOH C . H 6 HOH 24 124 1030 HOH HOH C . H 6 HOH 25 125 1033 HOH HOH C . H 6 HOH 26 126 1036 HOH HOH C . H 6 HOH 27 127 1040 HOH HOH C . H 6 HOH 28 128 1041 HOH HOH C . H 6 HOH 29 129 1058 HOH HOH C . H 6 HOH 30 130 1065 HOH HOH C . H 6 HOH 31 131 1068 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3480 ? 1 MORE -11.8 ? 1 'SSA (A^2)' 13090 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 118 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 OD1 ? A ASP 120 ? A ASP 133 ? 1_555 98.2 ? 2 NE2 ? A HIS 118 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 NE2 ? A HIS 174 ? A HIS 187 ? 1_555 91.7 ? 3 OD1 ? A ASP 120 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 NE2 ? A HIS 174 ? A HIS 187 ? 1_555 90.5 ? 4 NE2 ? A HIS 118 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O2 ? E AKG . ? A AKG 502 ? 1_555 92.1 ? 5 OD1 ? A ASP 120 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O2 ? E AKG . ? A AKG 502 ? 1_555 108.3 ? 6 NE2 ? A HIS 174 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O2 ? E AKG . ? A AKG 502 ? 1_555 160.0 ? 7 NE2 ? A HIS 118 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O5 ? E AKG . ? A AKG 502 ? 1_555 96.9 ? 8 OD1 ? A ASP 120 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O5 ? E AKG . ? A AKG 502 ? 1_555 164.9 ? 9 NE2 ? A HIS 174 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O5 ? E AKG . ? A AKG 502 ? 1_555 88.9 ? 10 O2 ? E AKG . ? A AKG 502 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O5 ? E AKG . ? A AKG 502 ? 1_555 71.2 ? 11 NE2 ? A HIS 118 ? A HIS 131 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O ? F HOH . ? A HOH 625 ? 1_555 173.5 ? 12 OD1 ? A ASP 120 ? A ASP 133 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O ? F HOH . ? A HOH 625 ? 1_555 86.9 ? 13 NE2 ? A HIS 174 ? A HIS 187 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O ? F HOH . ? A HOH 625 ? 1_555 92.4 ? 14 O2 ? E AKG . ? A AKG 502 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O ? F HOH . ? A HOH 625 ? 1_555 82.4 ? 15 O5 ? E AKG . ? A AKG 502 ? 1_555 MN ? D MN . ? A MN 501 ? 1_555 O ? F HOH . ? A HOH 625 ? 1_555 78.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-05-28 4 'Structure model' 1 3 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Non-polymer description' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_conn_type 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.conn_type_id' 17 4 'Structure model' '_struct_conn.id' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 4 'Structure model' '_struct_conn_type.id' 36 4 'Structure model' '_struct_ref_seq_dif.details' 37 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -8.2693 -1.7559 -21.3648 -0.1271 -0.1375 -0.1617 0.0064 -0.0067 0.0130 2.3078 1.7020 0.5352 -0.2984 -0.3959 0.1665 0.0287 0.0812 0.0567 -0.0678 -0.0174 0.0276 0.0328 -0.0164 -0.0113 'X-RAY DIFFRACTION' 2 ? refined -9.6532 -17.5092 -38.6714 0.0116 0.0022 -0.0428 0.0739 -0.0638 -0.0167 2.0943 0.0158 0.3285 0.1432 -0.8266 -0.0529 0.1789 0.5664 -0.1057 -0.2336 -0.1289 0.1034 -0.1182 -0.0441 -0.0500 'X-RAY DIFFRACTION' 3 ? refined -6.5317 -19.9564 -39.0628 -0.0065 0.0140 -0.0396 0.0480 -0.0003 0.0360 9.2404 2.7612 4.7752 0.2833 4.8320 -0.0471 -0.2511 0.6292 -0.0134 -0.2119 0.2313 0.1444 -0.2080 0.0052 0.0199 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 14 C 1 A 214 C 201 ? 'X-RAY DIFFRACTION' ? 2 2 B 1 A 1 B 13 A 13 ? 'X-RAY DIFFRACTION' ? 3 3 C 1 B 1 C 13 B 13 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASES phasing . ? 1 REFMAC refinement 5.2 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 5 ? B "C1'" B DT 5 ? B N1 B DT 5 ? B 111.15 108.30 2.85 0.30 N 2 1 "O4'" B DA 7 ? A "C1'" B DA 7 ? A N9 B DA 7 ? A 111.02 108.30 2.72 0.30 N 3 1 "O4'" C DT 6 ? A "C1'" C DT 6 ? A N1 C DT 6 ? A 110.64 108.30 2.34 0.30 N 4 1 "O4'" C DT 6 ? B "C1'" C DT 6 ? B N1 C DT 6 ? B 111.26 108.30 2.96 0.30 N 5 1 "O4'" C DC 11 ? A "C1'" C DC 11 ? A N1 C DC 11 ? A 110.33 108.30 2.03 0.30 N 6 1 "O4'" C DC 11 ? B "C1'" C DC 11 ? B N1 C DC 11 ? B 110.51 108.30 2.21 0.30 N 7 1 "O4'" C DC 12 ? A "C1'" C DC 12 ? A N1 C DC 12 ? A 110.31 108.30 2.01 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 201 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 68.54 _pdbx_validate_torsion.psi -73.22 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3BKZ 'double helix' 3BKZ 'b-form double helix' 3BKZ 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 2 1_555 C DT 13 1_555 0.519 -0.028 -0.791 -18.847 -5.176 10.682 1 B_DA2:DT13_C B 2 ? C 13 ? 20 1 1 B DG 3 1_555 C DC 12 1_555 0.406 0.072 0.425 4.807 -14.968 0.593 2 B_DG3:DC12_C B 3 ? C 12 ? 19 1 1 B DG 4 1_555 C DC 11 1_555 -0.371 0.158 0.570 3.081 -9.678 2.479 3 B_DG4:DC11_C B 4 ? C 11 ? 19 1 1 B DT 5 1_555 C DA 10 1_555 0.166 -0.156 0.599 3.490 -17.735 1.977 4 B_DT5:DA10_C B 5 ? C 10 ? 20 1 1 B DA 6 1_555 C DT 9 1_555 0.511 -0.078 0.948 18.082 -12.119 10.929 5 B_DA6:DT9_C B 6 ? C 9 ? 20 1 1 B DA 7 1_555 C DA 7 1_555 -4.133 1.063 -0.562 -1.594 1.382 -109.511 6 B_DA7:DA7_C B 7 ? C 7 ? 5 4 1 B DA 9 1_555 C DT 6 1_555 0.210 -0.015 0.504 -13.134 -14.695 7.660 7 B_DA9:DT6_C B 9 ? C 6 ? 20 1 1 B DT 10 1_555 C DA 5 1_555 -0.135 -0.073 -0.125 -0.998 -4.747 -0.938 8 B_DT10:DA5_C B 10 ? C 5 ? 20 1 1 B DC 11 1_555 C DG 4 1_555 0.087 -0.177 -0.156 0.695 -8.308 -0.735 9 B_DC11:DG4_C B 11 ? C 4 ? 19 1 1 B DG 12 1_555 C DC 3 1_555 -0.266 -0.157 0.036 -1.514 -6.022 1.774 10 B_DG12:DC3_C B 12 ? C 3 ? 19 1 1 B DT 13 1_555 C DA 2 1_555 0.025 -0.147 -0.081 6.238 -6.431 1.990 11 B_DT13:DA2_C B 13 ? C 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 2 1_555 C DT 13 1_555 B DG 3 1_555 C DC 12 1_555 -1.065 1.396 2.792 -13.122 -1.609 35.827 2.323 0.129 2.928 -2.513 20.491 38.114 1 BB_DA2DG3:DC12DT13_CC B 2 ? C 13 ? B 3 ? C 12 ? 1 B DG 3 1_555 C DC 12 1_555 B DG 4 1_555 C DC 11 1_555 -0.390 -0.541 3.201 -4.230 0.914 30.903 -1.177 -0.067 3.208 1.705 7.889 31.197 2 BB_DG3DG4:DC11DC12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DG 4 1_555 C DC 11 1_555 B DT 5 1_555 C DA 10 1_555 -0.161 -0.544 3.353 -0.358 -1.459 31.714 -0.720 0.226 3.376 -2.669 0.655 31.749 3 BB_DG4DT5:DA10DC11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 B DT 5 1_555 C DA 10 1_555 B DA 6 1_555 C DT 9 1_555 1.149 0.549 2.888 1.593 -1.443 39.923 0.949 -1.519 2.909 -2.112 -2.331 39.978 4 BB_DT5DA6:DT9DA10_CC B 5 ? C 10 ? B 6 ? C 9 ? 1 B DA 7 1_555 C DA 7 1_555 B DA 9 1_555 C DT 6 1_555 4.266 -0.645 4.836 6.993 171.316 157.192 -0.795 -2.114 4.649 85.742 -3.500 178.313 5 BB_DA7DA9:DT6DA7_CC B 7 ? C 7 ? B 9 ? C 6 ? 1 B DA 9 1_555 C DT 6 1_555 B DT 10 1_555 C DA 5 1_555 -0.724 -0.787 3.048 6.871 3.508 27.306 -2.329 2.891 2.670 7.250 -14.199 28.355 6 BB_DA9DT10:DA5DT6_CC B 9 ? C 6 ? B 10 ? C 5 ? 1 B DT 10 1_555 C DA 5 1_555 B DC 11 1_555 C DG 4 1_555 0.202 -0.377 3.319 1.930 0.035 35.424 -0.625 -0.044 3.325 0.058 -3.169 35.475 7 BB_DT10DC11:DG4DA5_CC B 10 ? C 5 ? B 11 ? C 4 ? 1 B DC 11 1_555 C DG 4 1_555 B DG 12 1_555 C DC 3 1_555 0.106 -0.057 3.413 -1.976 6.580 34.329 -1.128 -0.486 3.334 11.011 3.307 34.989 8 BB_DC11DG12:DC3DG4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 B DG 12 1_555 C DC 3 1_555 B DT 13 1_555 C DA 2 1_555 -0.091 -0.473 3.150 0.722 0.613 30.929 -1.000 0.306 3.137 1.148 -1.354 30.943 9 BB_DG12DT13:DA2DC3_CC B 12 ? C 3 ? B 13 ? C 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 '2-OXOGLUTARIC ACID' AKG 6 water HOH #