data_3CW6 # _entry.id 3CW6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CW6 pdb_00003cw6 10.2210/pdb3cw6/pdb NDB UR0140 ? ? RCSB RCSB047285 ? ? WWPDB D_1000047285 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.entry_id 3CW6 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-04-21 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3CW5 _pdbx_database_related.details 'E. coli initiator tRNA at pH 4.6' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barraud, P.' 1 'Schmitt, E.' 2 'Mechulam, Y.' 3 'Dardel, F.' 4 'Tisne, C.' 5 # _citation.id primary _citation.title 'A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 36 _citation.page_first 4894 _citation.page_last 4901 _citation.year 2008 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18653533 _citation.pdbx_database_id_DOI 10.1093/nar/gkn462 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barraud, P.' 1 ? primary 'Schmitt, E.' 2 ? primary 'Mechulam, Y.' 3 ? primary 'Dardel, F.' 4 ? primary 'Tisne, C.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Initiator tRNA' _entity.formula_weight 24832.918 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;CGCGGGG(4SU)GGAGCAGCCUGG(H2U)AGCUCGUCGGG(OMC)UCAUAACCCGAAGAUCGUCGG(5MU)(PSU)CAAA UCCGGCCCCCGCAACCA ; _entity_poly.pdbx_seq_one_letter_code_can CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 G n 1 6 G n 1 7 G n 1 8 4SU n 1 9 G n 1 10 G n 1 11 A n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 C n 1 17 C n 1 18 U n 1 19 G n 1 20 G n 1 21 H2U n 1 22 A n 1 23 G n 1 24 C n 1 25 U n 1 26 C n 1 27 G n 1 28 U n 1 29 C n 1 30 G n 1 31 G n 1 32 G n 1 33 OMC n 1 34 U n 1 35 C n 1 36 A n 1 37 U n 1 38 A n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 A n 1 45 A n 1 46 G n 1 47 A n 1 48 U n 1 49 C n 1 50 G n 1 51 U n 1 52 C n 1 53 G n 1 54 G n 1 55 5MU n 1 56 PSU n 1 57 C n 1 58 A n 1 59 A n 1 60 A n 1 61 U n 1 62 C n 1 63 C n 1 64 G n 1 65 G n 1 66 C n 1 67 C n 1 68 C n 1 69 C n 1 70 C n 1 71 G n 1 72 C n 1 73 A n 1 74 A n 1 75 C n 1 76 C n 1 77 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM101TR _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBSTtRNAfMet _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4SU 'RNA linking' n "4-THIOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P S' 340.247 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 4SU 8 8 8 4SU 4SU A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 17 17 U U A A n A 1 19 G 19 18 18 G G A . n A 1 20 G 20 19 19 G G A . n A 1 21 H2U 21 20 20 H2U H2U A . n A 1 22 A 22 21 21 A A A . n A 1 23 G 23 22 22 G G A . n A 1 24 C 24 23 23 C C A . n A 1 25 U 25 24 24 U U A . n A 1 26 C 26 25 25 C C A . n A 1 27 G 27 26 26 G G A . n A 1 28 U 28 27 27 U U A . n A 1 29 C 29 28 28 C C A . n A 1 30 G 30 29 29 G G A . n A 1 31 G 31 30 30 G G A . n A 1 32 G 32 31 31 G G A . n A 1 33 OMC 33 32 32 OMC OMC A . n A 1 34 U 34 33 33 U U A . n A 1 35 C 35 34 34 C C A . n A 1 36 A 36 35 35 A A A . n A 1 37 U 37 36 36 U U A . n A 1 38 A 38 37 37 A A A . n A 1 39 A 39 38 38 A A A . n A 1 40 C 40 39 39 C C A . n A 1 41 C 41 40 40 C C A . n A 1 42 C 42 41 41 C C A . n A 1 43 G 43 42 42 G G A . n A 1 44 A 44 43 43 A A A . n A 1 45 A 45 44 44 A A A . n A 1 46 G 46 45 45 G G A . n A 1 47 A 47 46 46 A A A . n A 1 48 U 48 47 47 U U A . n A 1 49 C 49 48 48 C C A . n A 1 50 G 50 49 49 G G A . n A 1 51 U 51 50 50 U U A . n A 1 52 C 52 51 51 C C A . n A 1 53 G 53 52 52 G G A . n A 1 54 G 54 53 53 G G A . n A 1 55 5MU 55 54 54 5MU 5MU A . n A 1 56 PSU 56 55 55 PSU PSU A . n A 1 57 C 57 56 56 C C A . n A 1 58 A 58 57 57 A A A . n A 1 59 A 59 58 58 A A A . n A 1 60 A 60 59 59 A A A . n A 1 61 U 61 60 60 U U A . n A 1 62 C 62 61 61 C C A . n A 1 63 C 63 62 62 C C A . n A 1 64 G 64 63 63 G G A . n A 1 65 G 65 64 64 G G A . n A 1 66 C 66 65 65 C C A . n A 1 67 C 67 66 66 C C A . n A 1 68 C 68 67 67 C C A . n A 1 69 C 69 68 68 C C A . n A 1 70 C 70 69 69 C C A . n A 1 71 G 71 70 70 G G A . n A 1 72 C 72 71 71 C C A . n A 1 73 A 73 72 72 A A A . n A 1 74 A 74 73 73 A A A . n A 1 75 C 75 74 74 C C A . n A 1 76 C 76 75 75 C C A . n A 1 77 A 77 76 76 A A A . n # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'A.G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA 3.2.25 21/9/2006 other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 PHASER . ? ? ? ? phasing ? ? ? 5 # _cell.entry_id 3CW6 _cell.length_a 93.800 _cell.length_b 93.800 _cell.length_c 218.590 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CW6 _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 # _exptl.crystals_number 1 _exptl.entry_id 3CW6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.59 _exptl_crystal.density_percent_sol 77.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details '2.0 M Ammonium Sulphate, pH 8.0, VAPOR DIFFUSION, temperature 292K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 '(NH4)2SO4' ? ? ? 1 2 2 '(NH4)2SO4' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2006-11-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-3' _diffrn_source.pdbx_wavelength_list 0.931 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-3 # _reflns.entry_id 3CW6 _reflns.d_resolution_high 3.300 _reflns.d_resolution_low 38.905 _reflns.number_all 8490 _reflns.number_obs 7902 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_netI_over_sigmaI 4.900 _reflns.pdbx_Rsym_value 0.103 _reflns.pdbx_redundancy 8.000 _reflns.percent_possible_obs 91.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 3.30 3.48 ? 4286 ? 0.674 1.1 0.674 ? 4.90 ? 875 67.40 1 1 3.48 3.69 ? 5936 ? 0.620 1.2 0.620 ? 5.90 ? 998 82.30 2 1 3.69 3.94 ? 8128 ? 0.472 1.6 0.472 ? 7.30 ? 1107 93.60 3 1 3.94 4.26 ? 9873 ? 0.469 1.6 0.469 ? 9.00 ? 1093 99.70 4 1 4.26 4.67 ? 9320 ? 0.239 2.9 0.239 ? 9.10 ? 1024 99.70 5 1 4.67 5.22 ? 8644 ? 0.159 4.2 0.159 ? 9.20 ? 937 99.60 6 1 5.22 6.02 ? 7792 ? 0.114 5.7 0.114 ? 9.40 ? 827 99.50 7 1 6.02 7.38 ? 6529 ? 0.078 7.7 0.078 ? 9.00 ? 724 99.30 8 1 7.38 10.44 ? 5302 ? 0.043 13.0 0.043 ? 9.20 ? 578 98.80 9 1 10.44 81.38 ? 2453 ? 0.043 12.1 0.043 ? 7.50 ? 327 92.40 10 1 # _refine.entry_id 3CW6 _refine.ls_d_res_high 3.300 _refine.ls_d_res_low 38.905 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 86.090 _refine.ls_number_reflns_obs 7902 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.235 _refine.ls_R_factor_R_work 0.231 _refine.ls_R_factor_R_free 0.274 _refine.ls_percent_reflns_R_free 9.900 _refine.ls_number_reflns_R_free 779 _refine.B_iso_mean 82.315 _refine.aniso_B[1][1] 3.580 _refine.aniso_B[2][2] 3.580 _refine.aniso_B[3][3] -5.370 _refine.aniso_B[1][2] 1.790 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.924 _refine.correlation_coeff_Fo_to_Fc_free 0.885 _refine.pdbx_overall_ESU_R 1.445 _refine.pdbx_overall_ESU_R_Free 0.473 _refine.overall_SU_ML 0.374 _refine.overall_SU_B 49.215 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 8490 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1645 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1645 _refine_hist.d_res_high 3.300 _refine_hist.d_res_low 38.905 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1837 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2863 1.946 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 364 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 799 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 905 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1168 0.294 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 62 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 54 0.291 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.255 0.200 ? 'X-RAY DIFFRACTION' ? r_scbond_it 2598 0.850 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 2863 1.535 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 3.300 _refine_ls_shell.d_res_low 3.385 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 45.630 _refine_ls_shell.number_reflns_R_work 268 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.281 _refine_ls_shell.R_factor_R_free 0.395 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 303 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CW6 _struct.title 'E. coli Initiator tRNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CW6 _struct_keywords.text 'tRNA, initiator, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name GB _struct_ref.db_code X70452 _struct_ref.pdbx_db_accession 312135 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code CGCGGGGUGGAGCAGCCUGGNAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUNCAAAUCCGGCCCCCGCAACCA _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CW6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 77 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 312135 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 77 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 7 "O3'" ? ? ? 1_555 A 4SU 8 P ? ? A G 7 A 4SU 8 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale2 covale both ? A 4SU 8 "O3'" ? ? ? 1_555 A G 9 P ? ? A 4SU 8 A G 9 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale3 covale both ? A G 20 "O3'" ? ? ? 1_555 A H2U 21 P ? ? A G 19 A H2U 20 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale4 covale both ? A H2U 21 "O3'" ? ? ? 1_555 A A 22 P ? ? A H2U 20 A A 21 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale5 covale both ? A G 32 "O3'" ? ? ? 1_555 A OMC 33 P ? ? A G 31 A OMC 32 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale6 covale both ? A OMC 33 "O3'" ? ? ? 1_555 A U 34 P ? ? A OMC 32 A U 33 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale7 covale both ? A G 54 "O3'" ? ? ? 1_555 A 5MU 55 P ? ? A G 53 A 5MU 54 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale8 covale both ? A 5MU 55 "O3'" ? ? ? 1_555 A PSU 56 P ? ? A 5MU 54 A PSU 55 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale9 covale both ? A PSU 56 "O3'" ? ? ? 1_555 A C 57 P ? ? A PSU 55 A C 56 1_555 ? ? ? ? ? ? ? 1.603 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 2 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 4 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 4 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 4 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 6 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 7 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A 4SU 8 O2 ? ? ? 1_555 A C 13 N4 ? ? A 4SU 8 A C 13 1_555 ? ? ? ? ? ? '4SU-C MISPAIR' ? ? ? hydrog20 hydrog ? ? A 4SU 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A 4SU 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A 4SU 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A 4SU 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 46 N2 ? ? A G 10 A G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 25 N3 ? ? A A 11 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 25 O4 ? ? A A 11 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 49 O2 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 49 N3 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 19 N1 ? ? ? 1_555 A PSU 56 O4 ? ? A G 18 A PSU 55 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 23 N7 ? ? ? 1_555 A A 47 N6 ? ? A G 22 A A 46 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A G 27 N1 ? ? ? 1_555 A A 45 N1 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog42 hydrog ? ? A G 27 O6 ? ? ? 1_555 A A 45 N6 ? ? A G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog43 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 44 N1 ? ? A U 27 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 44 N6 ? ? A U 27 A A 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 30 N7 ? ? ? 1_555 A A 38 N6 ? ? A G 29 A A 37 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog49 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A OMC 33 O2 ? ? ? 1_555 A A 39 N6 ? ? A OMC 32 A A 38 1_555 ? ? ? ? ? ? 'OMC-A MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 50 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 50 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 49 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 51 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 50 A G 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A U 51 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 50 A G 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A C 52 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 51 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 52 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 51 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 52 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 51 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 54 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 54 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 54 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A 5MU 55 N3 ? ? ? 1_555 A A 59 N7 ? ? A 5MU 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog74 hydrog ? ? A 5MU 55 O2 ? ? ? 1_555 A A 59 N6 ? ? A 5MU 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "O2'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 C _pdbx_validate_close_contact.auth_seq_id_1 16 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 C _pdbx_validate_close_contact.auth_seq_id_2 61 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 C _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 C _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.483 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.124 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A C 1 ? ? P A C 1 ? ? OP2 A C 1 ? ? 105.49 119.60 -14.11 1.50 N 2 1 "O4'" A C 13 ? ? "C1'" A C 13 ? ? N1 A C 13 ? ? 115.08 108.50 6.58 0.70 N 3 1 "O5'" A G 15 ? ? "C5'" A G 15 ? ? "C4'" A G 15 ? ? 104.56 109.40 -4.84 0.80 N 4 1 "C3'" A C 16 ? ? "O3'" A C 16 ? ? P A C 17 ? ? 109.61 119.70 -10.09 1.20 Y 5 1 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.40 108.50 4.90 0.70 N 6 1 "O4'" A G 22 ? ? "C1'" A G 22 ? ? N9 A G 22 ? ? 112.86 108.50 4.36 0.70 N 7 1 "C3'" A U 24 ? ? "O3'" A U 24 ? ? P A C 25 ? ? 111.21 119.70 -8.49 1.20 Y 8 1 "C5'" A G 49 ? ? "C4'" A G 49 ? ? "O4'" A G 49 ? ? 115.52 109.80 5.72 0.90 N 9 1 "C1'" A C 56 ? ? "O4'" A C 56 ? ? "C4'" A C 56 ? ? 105.24 109.70 -4.46 0.70 N 10 1 "O4'" A U 60 ? ? "C1'" A U 60 ? ? N1 A U 60 ? ? 102.84 108.20 -5.36 0.80 N 11 1 "C1'" A A 76 ? ? "O4'" A A 76 ? ? "C4'" A A 76 ? ? 105.16 109.70 -4.54 0.70 N 12 1 "O4'" A A 76 ? ? "C1'" A A 76 ? ? N9 A A 76 ? ? 114.24 108.50 5.74 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 4SU 8 A 4SU 8 ? U "4-THIOURIDINE-5'-MONOPHOSPHATE" 2 A H2U 21 A H2U 20 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 3 A OMC 33 A OMC 32 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 4 A 5MU 55 A 5MU 54 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 5 A PSU 56 A PSU 55 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -34.3352 _pdbx_refine_tls.origin_y 21.5275 _pdbx_refine_tls.origin_z -27.5249 _pdbx_refine_tls.T[1][1] -0.2903 _pdbx_refine_tls.T[2][2] 0.2952 _pdbx_refine_tls.T[3][3] 0.1608 _pdbx_refine_tls.T[1][2] -0.3380 _pdbx_refine_tls.T[1][3] 0.1105 _pdbx_refine_tls.T[2][3] -0.0117 _pdbx_refine_tls.L[1][1] 2.7392 _pdbx_refine_tls.L[2][2] 3.0165 _pdbx_refine_tls.L[3][3] 2.7313 _pdbx_refine_tls.L[1][2] -0.5183 _pdbx_refine_tls.L[1][3] -1.2701 _pdbx_refine_tls.L[2][3] -1.1529 _pdbx_refine_tls.S[1][1] 0.0505 _pdbx_refine_tls.S[2][2] 0.1239 _pdbx_refine_tls.S[3][3] -0.1744 _pdbx_refine_tls.S[1][2] -0.7906 _pdbx_refine_tls.S[1][3] -0.5312 _pdbx_refine_tls.S[2][3] -0.3630 _pdbx_refine_tls.S[2][1] 0.1354 _pdbx_refine_tls.S[3][1] 0.3556 _pdbx_refine_tls.S[3][2] 0.0557 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 76 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 77 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4SU N1 N N N 1 4SU C2 C N N 2 4SU N3 N N N 3 4SU C4 C N N 4 4SU C5 C N N 5 4SU C6 C N N 6 4SU O2 O N N 7 4SU S4 S N N 8 4SU "C1'" C N R 9 4SU "C2'" C N R 10 4SU "O2'" O N N 11 4SU "C3'" C N S 12 4SU "C4'" C N R 13 4SU "O3'" O N N 14 4SU "O4'" O N N 15 4SU "C5'" C N N 16 4SU "O5'" O N N 17 4SU P P N N 18 4SU OP1 O N N 19 4SU OP2 O N N 20 4SU OP3 O N N 21 4SU HN3 H N N 22 4SU H5 H N N 23 4SU H6 H N N 24 4SU "H1'" H N N 25 4SU "H2'" H N N 26 4SU "HO2'" H N N 27 4SU "H3'" H N N 28 4SU "H4'" H N N 29 4SU "HO3'" H N N 30 4SU "H5'" H N N 31 4SU "H5''" H N N 32 4SU HOP2 H N N 33 4SU HOP3 H N N 34 5MU N1 N N N 35 5MU C2 C N N 36 5MU N3 N N N 37 5MU C4 C N N 38 5MU C5 C N N 39 5MU C5M C N N 40 5MU C6 C N N 41 5MU O2 O N N 42 5MU O4 O N N 43 5MU "C1'" C N R 44 5MU "C2'" C N R 45 5MU "O2'" O N N 46 5MU "C3'" C N S 47 5MU "C4'" C N R 48 5MU "O3'" O N N 49 5MU "O4'" O N N 50 5MU "C5'" C N N 51 5MU "O5'" O N N 52 5MU P P N N 53 5MU OP1 O N N 54 5MU OP2 O N N 55 5MU OP3 O N N 56 5MU HN3 H N N 57 5MU H71 H N N 58 5MU H72 H N N 59 5MU H73 H N N 60 5MU H6 H N N 61 5MU "H1'" H N N 62 5MU "H2'" H N N 63 5MU "HO2'" H N N 64 5MU "H3'" H N N 65 5MU "H4'" H N N 66 5MU "HO3'" H N N 67 5MU "H5'" H N N 68 5MU "H5''" H N N 69 5MU HOP2 H N N 70 5MU HOP3 H N N 71 A OP3 O N N 72 A P P N N 73 A OP1 O N N 74 A OP2 O N N 75 A "O5'" O N N 76 A "C5'" C N N 77 A "C4'" C N R 78 A "O4'" O N N 79 A "C3'" C N S 80 A "O3'" O N N 81 A "C2'" C N R 82 A "O2'" O N N 83 A "C1'" C N R 84 A N9 N Y N 85 A C8 C Y N 86 A N7 N Y N 87 A C5 C Y N 88 A C6 C Y N 89 A N6 N N N 90 A N1 N Y N 91 A C2 C Y N 92 A N3 N Y N 93 A C4 C Y N 94 A HOP3 H N N 95 A HOP2 H N N 96 A "H5'" H N N 97 A "H5''" H N N 98 A "H4'" H N N 99 A "H3'" H N N 100 A "HO3'" H N N 101 A "H2'" H N N 102 A "HO2'" H N N 103 A "H1'" H N N 104 A H8 H N N 105 A H61 H N N 106 A H62 H N N 107 A H2 H N N 108 C OP3 O N N 109 C P P N N 110 C OP1 O N N 111 C OP2 O N N 112 C "O5'" O N N 113 C "C5'" C N N 114 C "C4'" C N R 115 C "O4'" O N N 116 C "C3'" C N S 117 C "O3'" O N N 118 C "C2'" C N R 119 C "O2'" O N N 120 C "C1'" C N R 121 C N1 N N N 122 C C2 C N N 123 C O2 O N N 124 C N3 N N N 125 C C4 C N N 126 C N4 N N N 127 C C5 C N N 128 C C6 C N N 129 C HOP3 H N N 130 C HOP2 H N N 131 C "H5'" H N N 132 C "H5''" H N N 133 C "H4'" H N N 134 C "H3'" H N N 135 C "HO3'" H N N 136 C "H2'" H N N 137 C "HO2'" H N N 138 C "H1'" H N N 139 C H41 H N N 140 C H42 H N N 141 C H5 H N N 142 C H6 H N N 143 G OP3 O N N 144 G P P N N 145 G OP1 O N N 146 G OP2 O N N 147 G "O5'" O N N 148 G "C5'" C N N 149 G "C4'" C N R 150 G "O4'" O N N 151 G "C3'" C N S 152 G "O3'" O N N 153 G "C2'" C N R 154 G "O2'" O N N 155 G "C1'" C N R 156 G N9 N Y N 157 G C8 C Y N 158 G N7 N Y N 159 G C5 C Y N 160 G C6 C N N 161 G O6 O N N 162 G N1 N N N 163 G C2 C N N 164 G N2 N N N 165 G N3 N N N 166 G C4 C Y N 167 G HOP3 H N N 168 G HOP2 H N N 169 G "H5'" H N N 170 G "H5''" H N N 171 G "H4'" H N N 172 G "H3'" H N N 173 G "HO3'" H N N 174 G "H2'" H N N 175 G "HO2'" H N N 176 G "H1'" H N N 177 G H8 H N N 178 G H1 H N N 179 G H21 H N N 180 G H22 H N N 181 H2U P P N N 182 H2U OP1 O N N 183 H2U OP2 O N N 184 H2U OP3 O N N 185 H2U "O5'" O N N 186 H2U "C5'" C N N 187 H2U "C4'" C N R 188 H2U "O4'" O N N 189 H2U "C3'" C N S 190 H2U "O3'" O N N 191 H2U "C1'" C N R 192 H2U "C2'" C N R 193 H2U "O2'" O N N 194 H2U N1 N N N 195 H2U C2 C N N 196 H2U O2 O N N 197 H2U N3 N N N 198 H2U C4 C N N 199 H2U O4 O N N 200 H2U C5 C N N 201 H2U C6 C N N 202 H2U HOP2 H N N 203 H2U HOP3 H N N 204 H2U "H5'" H N N 205 H2U "H5''" H N N 206 H2U "H4'" H N N 207 H2U "H3'" H N N 208 H2U "HO3'" H N N 209 H2U "H1'" H N N 210 H2U "H2'" H N N 211 H2U "HO2'" H N N 212 H2U HN3 H N N 213 H2U H51 H N N 214 H2U H52 H N N 215 H2U H61 H N N 216 H2U H62 H N N 217 OMC N1 N N N 218 OMC C2 C N N 219 OMC N3 N N N 220 OMC C4 C N N 221 OMC C5 C N N 222 OMC C6 C N N 223 OMC O2 O N N 224 OMC N4 N N N 225 OMC "C1'" C N R 226 OMC "C2'" C N R 227 OMC "O2'" O N N 228 OMC CM2 C N N 229 OMC "C3'" C N R 230 OMC "C4'" C N R 231 OMC "O4'" O N N 232 OMC "O3'" O N N 233 OMC "C5'" C N N 234 OMC "O5'" O N N 235 OMC P P N N 236 OMC OP1 O N N 237 OMC OP2 O N N 238 OMC OP3 O N N 239 OMC H5 H N N 240 OMC H6 H N N 241 OMC HN41 H N N 242 OMC HN42 H N N 243 OMC "H1'" H N N 244 OMC "H2'" H N N 245 OMC HM21 H N N 246 OMC HM22 H N N 247 OMC HM23 H N N 248 OMC "H3'" H N N 249 OMC "H4'" H N N 250 OMC "HO3'" H N N 251 OMC "H5'" H N N 252 OMC "H5''" H N N 253 OMC HOP2 H N N 254 OMC HOP3 H N N 255 PSU N1 N N N 256 PSU C2 C N N 257 PSU N3 N N N 258 PSU C4 C N N 259 PSU C5 C N N 260 PSU C6 C N N 261 PSU O2 O N N 262 PSU O4 O N N 263 PSU "C1'" C N S 264 PSU "C2'" C N R 265 PSU "O2'" O N N 266 PSU "C3'" C N S 267 PSU "C4'" C N R 268 PSU "O3'" O N N 269 PSU "O4'" O N N 270 PSU "C5'" C N N 271 PSU "O5'" O N N 272 PSU P P N N 273 PSU OP1 O N N 274 PSU OP2 O N N 275 PSU OP3 O N N 276 PSU HN1 H N N 277 PSU HN3 H N N 278 PSU H6 H N N 279 PSU "H1'" H N N 280 PSU "H2'" H N N 281 PSU "HO2'" H N N 282 PSU "H3'" H N N 283 PSU "H4'" H N N 284 PSU "HO3'" H N N 285 PSU "H5'" H N N 286 PSU "H5''" H N N 287 PSU HOP2 H N N 288 PSU HOP3 H N N 289 U OP3 O N N 290 U P P N N 291 U OP1 O N N 292 U OP2 O N N 293 U "O5'" O N N 294 U "C5'" C N N 295 U "C4'" C N R 296 U "O4'" O N N 297 U "C3'" C N S 298 U "O3'" O N N 299 U "C2'" C N R 300 U "O2'" O N N 301 U "C1'" C N R 302 U N1 N N N 303 U C2 C N N 304 U O2 O N N 305 U N3 N N N 306 U C4 C N N 307 U O4 O N N 308 U C5 C N N 309 U C6 C N N 310 U HOP3 H N N 311 U HOP2 H N N 312 U "H5'" H N N 313 U "H5''" H N N 314 U "H4'" H N N 315 U "H3'" H N N 316 U "HO3'" H N N 317 U "H2'" H N N 318 U "HO2'" H N N 319 U "H1'" H N N 320 U H3 H N N 321 U H5 H N N 322 U H6 H N N 323 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4SU N1 C2 sing N N 1 4SU N1 C6 sing N N 2 4SU N1 "C1'" sing N N 3 4SU C2 N3 sing N N 4 4SU C2 O2 doub N N 5 4SU N3 C4 sing N N 6 4SU N3 HN3 sing N N 7 4SU C4 C5 sing N N 8 4SU C4 S4 doub N N 9 4SU C5 C6 doub N N 10 4SU C5 H5 sing N N 11 4SU C6 H6 sing N N 12 4SU "C1'" "C2'" sing N N 13 4SU "C1'" "O4'" sing N N 14 4SU "C1'" "H1'" sing N N 15 4SU "C2'" "O2'" sing N N 16 4SU "C2'" "C3'" sing N N 17 4SU "C2'" "H2'" sing N N 18 4SU "O2'" "HO2'" sing N N 19 4SU "C3'" "C4'" sing N N 20 4SU "C3'" "O3'" sing N N 21 4SU "C3'" "H3'" sing N N 22 4SU "C4'" "O4'" sing N N 23 4SU "C4'" "C5'" sing N N 24 4SU "C4'" "H4'" sing N N 25 4SU "O3'" "HO3'" sing N N 26 4SU "C5'" "O5'" sing N N 27 4SU "C5'" "H5'" sing N N 28 4SU "C5'" "H5''" sing N N 29 4SU "O5'" P sing N N 30 4SU P OP1 doub N N 31 4SU P OP2 sing N N 32 4SU P OP3 sing N N 33 4SU OP2 HOP2 sing N N 34 4SU OP3 HOP3 sing N N 35 5MU N1 C2 sing N N 36 5MU N1 C6 sing N N 37 5MU N1 "C1'" sing N N 38 5MU C2 N3 sing N N 39 5MU C2 O2 doub N N 40 5MU N3 C4 sing N N 41 5MU N3 HN3 sing N N 42 5MU C4 C5 sing N N 43 5MU C4 O4 doub N N 44 5MU C5 C5M sing N N 45 5MU C5 C6 doub N N 46 5MU C5M H71 sing N N 47 5MU C5M H72 sing N N 48 5MU C5M H73 sing N N 49 5MU C6 H6 sing N N 50 5MU "C1'" "C2'" sing N N 51 5MU "C1'" "O4'" sing N N 52 5MU "C1'" "H1'" sing N N 53 5MU "C2'" "O2'" sing N N 54 5MU "C2'" "C3'" sing N N 55 5MU "C2'" "H2'" sing N N 56 5MU "O2'" "HO2'" sing N N 57 5MU "C3'" "C4'" sing N N 58 5MU "C3'" "O3'" sing N N 59 5MU "C3'" "H3'" sing N N 60 5MU "C4'" "O4'" sing N N 61 5MU "C4'" "C5'" sing N N 62 5MU "C4'" "H4'" sing N N 63 5MU "O3'" "HO3'" sing N N 64 5MU "C5'" "O5'" sing N N 65 5MU "C5'" "H5'" sing N N 66 5MU "C5'" "H5''" sing N N 67 5MU "O5'" P sing N N 68 5MU P OP1 doub N N 69 5MU P OP2 sing N N 70 5MU P OP3 sing N N 71 5MU OP2 HOP2 sing N N 72 5MU OP3 HOP3 sing N N 73 A OP3 P sing N N 74 A OP3 HOP3 sing N N 75 A P OP1 doub N N 76 A P OP2 sing N N 77 A P "O5'" sing N N 78 A OP2 HOP2 sing N N 79 A "O5'" "C5'" sing N N 80 A "C5'" "C4'" sing N N 81 A "C5'" "H5'" sing N N 82 A "C5'" "H5''" sing N N 83 A "C4'" "O4'" sing N N 84 A "C4'" "C3'" sing N N 85 A "C4'" "H4'" sing N N 86 A "O4'" "C1'" sing N N 87 A "C3'" "O3'" sing N N 88 A "C3'" "C2'" sing N N 89 A "C3'" "H3'" sing N N 90 A "O3'" "HO3'" sing N N 91 A "C2'" "O2'" sing N N 92 A "C2'" "C1'" sing N N 93 A "C2'" "H2'" sing N N 94 A "O2'" "HO2'" sing N N 95 A "C1'" N9 sing N N 96 A "C1'" "H1'" sing N N 97 A N9 C8 sing Y N 98 A N9 C4 sing Y N 99 A C8 N7 doub Y N 100 A C8 H8 sing N N 101 A N7 C5 sing Y N 102 A C5 C6 sing Y N 103 A C5 C4 doub Y N 104 A C6 N6 sing N N 105 A C6 N1 doub Y N 106 A N6 H61 sing N N 107 A N6 H62 sing N N 108 A N1 C2 sing Y N 109 A C2 N3 doub Y N 110 A C2 H2 sing N N 111 A N3 C4 sing Y N 112 C OP3 P sing N N 113 C OP3 HOP3 sing N N 114 C P OP1 doub N N 115 C P OP2 sing N N 116 C P "O5'" sing N N 117 C OP2 HOP2 sing N N 118 C "O5'" "C5'" sing N N 119 C "C5'" "C4'" sing N N 120 C "C5'" "H5'" sing N N 121 C "C5'" "H5''" sing N N 122 C "C4'" "O4'" sing N N 123 C "C4'" "C3'" sing N N 124 C "C4'" "H4'" sing N N 125 C "O4'" "C1'" sing N N 126 C "C3'" "O3'" sing N N 127 C "C3'" "C2'" sing N N 128 C "C3'" "H3'" sing N N 129 C "O3'" "HO3'" sing N N 130 C "C2'" "O2'" sing N N 131 C "C2'" "C1'" sing N N 132 C "C2'" "H2'" sing N N 133 C "O2'" "HO2'" sing N N 134 C "C1'" N1 sing N N 135 C "C1'" "H1'" sing N N 136 C N1 C2 sing N N 137 C N1 C6 sing N N 138 C C2 O2 doub N N 139 C C2 N3 sing N N 140 C N3 C4 doub N N 141 C C4 N4 sing N N 142 C C4 C5 sing N N 143 C N4 H41 sing N N 144 C N4 H42 sing N N 145 C C5 C6 doub N N 146 C C5 H5 sing N N 147 C C6 H6 sing N N 148 G OP3 P sing N N 149 G OP3 HOP3 sing N N 150 G P OP1 doub N N 151 G P OP2 sing N N 152 G P "O5'" sing N N 153 G OP2 HOP2 sing N N 154 G "O5'" "C5'" sing N N 155 G "C5'" "C4'" sing N N 156 G "C5'" "H5'" sing N N 157 G "C5'" "H5''" sing N N 158 G "C4'" "O4'" sing N N 159 G "C4'" "C3'" sing N N 160 G "C4'" "H4'" sing N N 161 G "O4'" "C1'" sing N N 162 G "C3'" "O3'" sing N N 163 G "C3'" "C2'" sing N N 164 G "C3'" "H3'" sing N N 165 G "O3'" "HO3'" sing N N 166 G "C2'" "O2'" sing N N 167 G "C2'" "C1'" sing N N 168 G "C2'" "H2'" sing N N 169 G "O2'" "HO2'" sing N N 170 G "C1'" N9 sing N N 171 G "C1'" "H1'" sing N N 172 G N9 C8 sing Y N 173 G N9 C4 sing Y N 174 G C8 N7 doub Y N 175 G C8 H8 sing N N 176 G N7 C5 sing Y N 177 G C5 C6 sing N N 178 G C5 C4 doub Y N 179 G C6 O6 doub N N 180 G C6 N1 sing N N 181 G N1 C2 sing N N 182 G N1 H1 sing N N 183 G C2 N2 sing N N 184 G C2 N3 doub N N 185 G N2 H21 sing N N 186 G N2 H22 sing N N 187 G N3 C4 sing N N 188 H2U P OP1 doub N N 189 H2U P OP2 sing N N 190 H2U P OP3 sing N N 191 H2U P "O5'" sing N N 192 H2U OP2 HOP2 sing N N 193 H2U OP3 HOP3 sing N N 194 H2U "O5'" "C5'" sing N N 195 H2U "C5'" "C4'" sing N N 196 H2U "C5'" "H5'" sing N N 197 H2U "C5'" "H5''" sing N N 198 H2U "C4'" "O4'" sing N N 199 H2U "C4'" "C3'" sing N N 200 H2U "C4'" "H4'" sing N N 201 H2U "O4'" "C1'" sing N N 202 H2U "C3'" "O3'" sing N N 203 H2U "C3'" "C2'" sing N N 204 H2U "C3'" "H3'" sing N N 205 H2U "O3'" "HO3'" sing N N 206 H2U "C1'" "C2'" sing N N 207 H2U "C1'" N1 sing N N 208 H2U "C1'" "H1'" sing N N 209 H2U "C2'" "O2'" sing N N 210 H2U "C2'" "H2'" sing N N 211 H2U "O2'" "HO2'" sing N N 212 H2U N1 C2 sing N N 213 H2U N1 C6 sing N N 214 H2U C2 O2 doub N N 215 H2U C2 N3 sing N N 216 H2U N3 C4 sing N N 217 H2U N3 HN3 sing N N 218 H2U C4 O4 doub N N 219 H2U C4 C5 sing N N 220 H2U C5 C6 sing N N 221 H2U C5 H51 sing N N 222 H2U C5 H52 sing N N 223 H2U C6 H61 sing N N 224 H2U C6 H62 sing N N 225 OMC N1 C2 sing N N 226 OMC N1 C6 sing N N 227 OMC N1 "C1'" sing N N 228 OMC C2 N3 sing N N 229 OMC C2 O2 doub N N 230 OMC N3 C4 doub N N 231 OMC C4 C5 sing N N 232 OMC C4 N4 sing N N 233 OMC C5 C6 doub N N 234 OMC C5 H5 sing N N 235 OMC C6 H6 sing N N 236 OMC N4 HN41 sing N N 237 OMC N4 HN42 sing N N 238 OMC "C1'" "C2'" sing N N 239 OMC "C1'" "O4'" sing N N 240 OMC "C1'" "H1'" sing N N 241 OMC "C2'" "O2'" sing N N 242 OMC "C2'" "C3'" sing N N 243 OMC "C2'" "H2'" sing N N 244 OMC "O2'" CM2 sing N N 245 OMC CM2 HM21 sing N N 246 OMC CM2 HM22 sing N N 247 OMC CM2 HM23 sing N N 248 OMC "C3'" "C4'" sing N N 249 OMC "C3'" "O3'" sing N N 250 OMC "C3'" "H3'" sing N N 251 OMC "C4'" "O4'" sing N N 252 OMC "C4'" "C5'" sing N N 253 OMC "C4'" "H4'" sing N N 254 OMC "O3'" "HO3'" sing N N 255 OMC "C5'" "O5'" sing N N 256 OMC "C5'" "H5'" sing N N 257 OMC "C5'" "H5''" sing N N 258 OMC "O5'" P sing N N 259 OMC P OP1 doub N N 260 OMC P OP2 sing N N 261 OMC P OP3 sing N N 262 OMC OP2 HOP2 sing N N 263 OMC OP3 HOP3 sing N N 264 PSU N1 C2 sing N N 265 PSU N1 C6 sing N N 266 PSU N1 HN1 sing N N 267 PSU C2 N3 sing N N 268 PSU C2 O2 doub N N 269 PSU N3 C4 sing N N 270 PSU N3 HN3 sing N N 271 PSU C4 C5 sing N N 272 PSU C4 O4 doub N N 273 PSU C5 C6 doub N N 274 PSU C5 "C1'" sing N N 275 PSU C6 H6 sing N N 276 PSU "C1'" "C2'" sing N N 277 PSU "C1'" "O4'" sing N N 278 PSU "C1'" "H1'" sing N N 279 PSU "C2'" "O2'" sing N N 280 PSU "C2'" "C3'" sing N N 281 PSU "C2'" "H2'" sing N N 282 PSU "O2'" "HO2'" sing N N 283 PSU "C3'" "C4'" sing N N 284 PSU "C3'" "O3'" sing N N 285 PSU "C3'" "H3'" sing N N 286 PSU "C4'" "O4'" sing N N 287 PSU "C4'" "C5'" sing N N 288 PSU "C4'" "H4'" sing N N 289 PSU "O3'" "HO3'" sing N N 290 PSU "C5'" "O5'" sing N N 291 PSU "C5'" "H5'" sing N N 292 PSU "C5'" "H5''" sing N N 293 PSU "O5'" P sing N N 294 PSU P OP1 doub N N 295 PSU P OP2 sing N N 296 PSU P OP3 sing N N 297 PSU OP2 HOP2 sing N N 298 PSU OP3 HOP3 sing N N 299 U OP3 P sing N N 300 U OP3 HOP3 sing N N 301 U P OP1 doub N N 302 U P OP2 sing N N 303 U P "O5'" sing N N 304 U OP2 HOP2 sing N N 305 U "O5'" "C5'" sing N N 306 U "C5'" "C4'" sing N N 307 U "C5'" "H5'" sing N N 308 U "C5'" "H5''" sing N N 309 U "C4'" "O4'" sing N N 310 U "C4'" "C3'" sing N N 311 U "C4'" "H4'" sing N N 312 U "O4'" "C1'" sing N N 313 U "C3'" "O3'" sing N N 314 U "C3'" "C2'" sing N N 315 U "C3'" "H3'" sing N N 316 U "O3'" "HO3'" sing N N 317 U "C2'" "O2'" sing N N 318 U "C2'" "C1'" sing N N 319 U "C2'" "H2'" sing N N 320 U "O2'" "HO2'" sing N N 321 U "C1'" N1 sing N N 322 U "C1'" "H1'" sing N N 323 U N1 C2 sing N N 324 U N1 C6 sing N N 325 U C2 O2 doub N N 326 U C2 N3 sing N N 327 U N3 C4 sing N N 328 U N3 H3 sing N N 329 U C4 O4 doub N N 330 U C4 C5 sing N N 331 U C5 C6 doub N N 332 U C5 H5 sing N N 333 U C6 H6 sing N N 334 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3CW6 'double helix' 3CW6 'a-form double helix' 3CW6 'parallel strands' 3CW6 'hairpin loop' 3CW6 'mismatched base pair' 3CW6 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 72 1_555 -0.887 -0.546 -0.102 -3.883 -9.840 -0.253 1 A_G2:C71_A A 2 ? A 71 ? 19 1 1 A C 3 1_555 A G 71 1_555 0.238 -0.452 0.528 -7.862 -4.084 -1.146 2 A_C3:G70_A A 3 ? A 70 ? 19 1 1 A G 4 1_555 A C 70 1_555 -0.484 -0.309 -0.210 0.943 2.800 -3.571 3 A_G4:C69_A A 4 ? A 69 ? 19 1 1 A G 5 1_555 A C 69 1_555 -0.740 -0.580 -0.345 -9.413 -5.649 0.065 4 A_G5:C68_A A 5 ? A 68 ? 19 1 1 A G 6 1_555 A C 68 1_555 -1.098 -0.345 -0.204 -9.919 -5.946 -2.327 5 A_G6:C67_A A 6 ? A 67 ? 19 1 1 A G 7 1_555 A C 67 1_555 -0.824 -0.356 -0.061 1.831 3.354 -5.231 6 A_G7:C66_A A 7 ? A 66 ? 19 1 1 A G 50 1_555 A C 66 1_555 0.351 -0.147 -0.267 -4.140 -3.376 -5.764 7 A_G49:C65_A A 49 ? A 65 ? 19 1 1 A U 51 1_555 A G 65 1_555 1.959 -0.841 -0.034 2.139 -1.435 -4.169 8 A_U50:G64_A A 50 ? A 64 ? 28 1 1 A C 52 1_555 A G 64 1_555 0.706 -0.394 -0.377 11.345 -12.152 0.591 9 A_C51:G63_A A 51 ? A 63 ? 19 1 1 A G 53 1_555 A C 63 1_555 0.280 -0.108 0.500 5.867 5.861 -2.967 10 A_G52:C62_A A 52 ? A 62 ? 19 1 1 A G 54 1_555 A C 62 1_555 0.293 -0.075 -0.531 -19.023 -5.650 1.017 11 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A 5MU 55 1_555 A A 59 1_555 4.095 -1.632 0.803 -1.137 10.124 -103.383 12 A_5MU54:A58_A A 54 ? A 58 ? 24 4 1 A PSU 56 1_555 A G 19 1_555 0.251 -5.075 0.632 16.528 21.716 -102.534 13 A_PSU55:G18_A A 55 ? A 18 ? ? 2 1 A A 39 1_555 A OMC 33 1_555 -3.053 -0.789 0.893 17.936 4.953 -2.821 14 A_A38:OMC32_A A 38 ? A 32 ? ? 1 1 A C 40 1_555 A G 32 1_555 0.339 -0.050 0.296 22.612 -17.306 5.468 15 A_C39:G31_A A 39 ? A 31 ? 19 1 1 A C 41 1_555 A G 31 1_555 -0.459 -0.308 -0.601 17.425 -13.160 -1.264 16 A_C40:G30_A A 40 ? A 30 ? 19 1 1 A C 42 1_555 A G 30 1_555 0.354 -0.497 -0.556 5.413 -4.839 -2.550 17 A_C41:G29_A A 41 ? A 29 ? 19 1 1 A G 43 1_555 A C 29 1_555 -0.264 -0.100 0.511 -4.500 -12.028 6.886 18 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A A 44 1_555 A U 28 1_555 -0.556 -0.308 -0.180 -19.496 -16.684 -4.412 19 A_A43:U27_A A 43 ? A 27 ? 20 1 1 A A 45 1_555 A G 27 1_555 0.443 1.639 0.175 -27.525 -13.241 -8.093 20 A_A44:G26_A A 44 ? A 26 ? 8 ? 1 A G 10 1_555 A C 26 1_555 -0.559 -0.562 -0.587 0.890 -0.696 -0.267 21 A_G10:C25_A A 10 ? A 25 ? 19 1 1 A A 11 1_555 A U 25 1_555 0.172 -0.312 0.041 -6.213 10.559 3.050 22 A_A11:U24_A A 11 ? A 24 ? 20 1 1 A G 12 1_555 A C 24 1_555 0.129 -0.121 -0.769 -25.225 -20.103 2.841 23 A_G12:C23_A A 12 ? A 23 ? 19 1 1 A C 13 1_555 A G 23 1_555 -0.117 -0.066 0.125 -13.670 -9.538 -2.371 24 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 14 1_555 A 4SU 8 1_555 -3.951 -1.713 1.379 8.475 24.745 -93.665 25 A_A14:4SU8_A A 14 ? A 8 ? 24 4 1 A G 15 1_555 A C 49 1_555 0.303 3.205 0.174 -17.446 -1.144 155.874 26 A_G15:C48_A A 15 ? A 48 ? 22 2 1 A G 20 1_555 A C 57 1_555 0.359 -0.471 0.135 -15.766 -11.043 -11.138 27 A_G19:C56_A A 19 ? A 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 72 1_555 A C 3 1_555 A G 71 1_555 -0.282 -2.156 3.283 -4.209 0.601 36.528 -3.501 -0.128 3.259 0.955 6.687 36.766 1 AA_G2C3:G70C71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A C 3 1_555 A G 71 1_555 A G 4 1_555 A C 70 1_555 0.545 -2.779 3.003 4.916 -2.830 18.339 -6.898 0.865 3.416 -8.615 -14.966 19.189 2 AA_C3G4:C69G70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A G 4 1_555 A C 70 1_555 A G 5 1_555 A C 69 1_555 0.441 -2.473 3.602 0.531 3.009 27.453 -5.957 -0.786 3.324 6.316 -1.114 27.619 3 AA_G4G5:C68C69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A G 5 1_555 A C 69 1_555 A G 6 1_555 A C 68 1_555 0.259 -2.322 3.114 0.421 6.610 28.430 -5.867 -0.435 2.525 13.233 -0.842 29.176 4 AA_G5G6:C67C68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A G 6 1_555 A C 68 1_555 A G 7 1_555 A C 67 1_555 0.254 -2.118 2.883 1.436 6.315 31.168 -4.810 -0.248 2.427 11.596 -2.638 31.817 5 AA_G6G7:C66C67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A G 7 1_555 A C 67 1_555 A G 50 1_555 A C 66 1_555 -0.038 -2.173 3.517 4.599 1.564 39.267 -3.407 0.630 3.406 2.317 -6.812 39.554 6 AA_G7G49:C65C66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A G 50 1_555 A C 66 1_555 A U 51 1_555 A G 65 1_555 -0.488 -2.097 3.068 -1.386 0.223 38.783 -3.182 0.575 3.072 0.336 2.086 38.808 7 AA_G49U50:G64C65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A U 51 1_555 A G 65 1_555 A C 52 1_555 A G 64 1_555 0.166 -1.643 2.841 8.352 5.350 29.074 -3.982 1.055 2.459 10.286 -16.058 30.685 8 AA_U50C51:G63G64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A C 52 1_555 A G 64 1_555 A G 53 1_555 A C 63 1_555 0.594 -2.501 3.126 -6.305 4.907 22.108 -7.552 -3.268 2.271 12.292 15.794 23.491 9 AA_C51G52:C62G63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A G 53 1_555 A C 63 1_555 A G 54 1_555 A C 62 1_555 0.858 -2.687 3.797 12.345 8.899 34.859 -5.397 0.436 3.159 14.056 -19.498 37.941 10 AA_G52G53:C61C62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 54 1_555 A C 62 1_555 A 5MU 55 1_555 A A 59 1_555 -2.532 -2.162 3.013 -3.457 3.275 84.773 -1.672 1.802 3.026 2.427 2.562 84.881 11 AA_G535MU54:A58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A 5MU 55 1_555 A A 59 1_555 A PSU 56 1_555 A G 19 1_555 1.740 -2.250 3.638 10.437 -1.444 39.636 -3.027 -1.126 4.027 -2.086 -15.071 40.958 12 AA_5MU54PSU55:G18A58_AA A 54 ? A 58 ? A 55 ? A 18 ? 1 A A 39 1_555 A OMC 33 1_555 A C 40 1_555 A G 32 1_555 0.165 -1.501 3.425 2.548 -6.115 46.265 -1.343 0.021 3.588 -7.736 -3.223 46.711 13 AA_A38C39:G31OMC32_AA A 38 ? A 32 ? A 39 ? A 31 ? 1 A C 40 1_555 A G 32 1_555 A C 41 1_555 A G 31 1_555 -0.432 -2.037 3.172 2.996 7.600 28.438 -5.417 1.409 2.498 15.082 -5.945 29.564 14 AA_C39C40:G30G31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A C 41 1_555 A G 31 1_555 A C 42 1_555 A G 30 1_555 -0.392 -1.610 3.685 -0.198 7.293 33.938 -3.905 0.625 3.281 12.317 0.335 34.691 15 AA_C40C41:G29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A C 42 1_555 A G 30 1_555 A G 43 1_555 A C 29 1_555 1.034 -1.867 3.244 -3.046 10.263 27.032 -5.698 -2.647 2.270 20.942 6.216 29.038 16 AA_C41G42:C28G29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 43 1_555 A C 29 1_555 A A 44 1_555 A U 28 1_555 -0.033 -2.051 3.491 7.768 6.947 31.822 -4.716 1.344 2.903 12.266 -13.716 33.443 17 AA_G42A43:U27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A A 44 1_555 A U 28 1_555 A A 45 1_555 A G 27 1_555 -0.235 -1.793 3.193 2.251 5.718 41.301 -3.081 0.551 2.914 8.053 -3.170 41.736 18 AA_A43A44:G26U27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 45 1_555 A G 27 1_555 A G 10 1_555 A C 26 1_555 -2.953 -2.645 3.111 20.038 5.584 51.934 -3.079 4.048 1.682 6.106 -21.909 55.675 19 AA_A44G10:C25G26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A G 10 1_555 A C 26 1_555 A A 11 1_555 A U 25 1_555 -0.769 -1.863 3.343 -7.434 1.383 35.955 -3.154 0.169 3.358 2.211 11.881 36.716 20 AA_G10A11:U24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A A 11 1_555 A U 25 1_555 A G 12 1_555 A C 24 1_555 0.472 -1.855 3.745 12.259 15.732 31.640 -5.100 0.974 2.584 25.889 -20.173 37.265 21 AA_A11G12:C23U24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A G 12 1_555 A C 24 1_555 A C 13 1_555 A G 23 1_555 0.702 -2.102 2.872 -0.189 2.767 25.019 -5.508 -1.658 2.623 6.361 0.434 25.169 22 AA_G12C13:G22C23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 13 1_555 A G 23 1_555 A A 14 1_555 A 4SU 8 1_555 -0.964 -0.444 2.718 -1.889 -10.066 70.589 -0.090 0.773 2.773 -8.665 1.626 71.233 23 AA_C13A14:4SU8G22_AA A 13 ? A 22 ? A 14 ? A 8 ? 1 A A 14 1_555 A 4SU 8 1_555 A G 15 1_555 A C 49 1_555 1.758 -3.294 3.220 3.046 13.476 -70.195 2.335 1.617 3.651 -11.606 2.624 -71.370 24 AA_A14G15:C484SU8_AA A 14 ? A 8 ? A 15 ? A 48 ? # _atom_sites.entry_id 3CW6 _atom_sites.fract_transf_matrix[1][1] 0.010661 _atom_sites.fract_transf_matrix[1][2] 0.006155 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012310 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004575 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_