data_3EJ5 # _entry.id 3EJ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EJ5 pdb_00003ej5 10.2210/pdb3ej5/pdb RCSB RCSB049387 ? ? WWPDB D_1000049387 ? ? # _pdbx_database_status.entry_id 3EJ5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bai, Y.' 1 'Monzingo, A.F.' 2 'Robertus, J.D.' 3 # _citation.id primary _citation.title 'The X-ray structure of ricin A chain with a novel inhibitor' _citation.journal_abbrev Arch.Biochem.Biophys. _citation.journal_volume 483 _citation.page_first 23 _citation.page_last 28 _citation.year 2009 _citation.journal_id_ASTM ABBIA4 _citation.country US _citation.journal_id_ISSN 0003-9861 _citation.journal_id_CSD 0158 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19138659 _citation.pdbx_database_id_DOI 10.1016/j.abb.2008.12.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bai, Y.' 1 ? primary 'Monzingo, A.F.' 2 ? primary 'Robertus, J.D.' 3 ? # _cell.length_a 42.642 _cell.length_b 68.006 _cell.length_c 49.675 _cell.angle_alpha 90.000 _cell.angle_beta 112.970 _cell.angle_gamma 90.000 _cell.entry_id 3EJ5 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3EJ5 _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ricin A chain' 28762.414 1 3.2.2.22 ? 'sequence database residues 40-296' ? 2 non-polymer syn '4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid' 289.287 1 ? ? ? ? 3 water nat water 18.015 20 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'rRNA N- glycosidase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVGY RAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTL AISFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSKFSVYD VSILIPIIALMVYRCAP ; _entity_poly.pdbx_seq_one_letter_code_can ;QYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVGY RAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTL AISFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSKFSVYD VSILIPIIALMVYRCAP ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 TYR n 1 3 PRO n 1 4 ILE n 1 5 ILE n 1 6 ASN n 1 7 PHE n 1 8 THR n 1 9 THR n 1 10 ALA n 1 11 GLY n 1 12 ALA n 1 13 THR n 1 14 VAL n 1 15 GLN n 1 16 SER n 1 17 TYR n 1 18 THR n 1 19 ASN n 1 20 PHE n 1 21 ILE n 1 22 ARG n 1 23 ALA n 1 24 VAL n 1 25 ARG n 1 26 GLY n 1 27 ARG n 1 28 LEU n 1 29 THR n 1 30 THR n 1 31 GLY n 1 32 ALA n 1 33 ASP n 1 34 VAL n 1 35 ARG n 1 36 HIS n 1 37 GLU n 1 38 ILE n 1 39 PRO n 1 40 VAL n 1 41 LEU n 1 42 PRO n 1 43 ASN n 1 44 ARG n 1 45 VAL n 1 46 GLY n 1 47 LEU n 1 48 PRO n 1 49 ILE n 1 50 ASN n 1 51 GLN n 1 52 ARG n 1 53 PHE n 1 54 ILE n 1 55 LEU n 1 56 VAL n 1 57 GLU n 1 58 LEU n 1 59 SER n 1 60 ASN n 1 61 HIS n 1 62 ALA n 1 63 GLU n 1 64 LEU n 1 65 SER n 1 66 VAL n 1 67 THR n 1 68 LEU n 1 69 ALA n 1 70 LEU n 1 71 ASP n 1 72 VAL n 1 73 THR n 1 74 ASN n 1 75 ALA n 1 76 TYR n 1 77 VAL n 1 78 VAL n 1 79 GLY n 1 80 TYR n 1 81 ARG n 1 82 ALA n 1 83 GLY n 1 84 ASN n 1 85 SER n 1 86 ALA n 1 87 TYR n 1 88 PHE n 1 89 PHE n 1 90 HIS n 1 91 PRO n 1 92 ASP n 1 93 ASN n 1 94 GLN n 1 95 GLU n 1 96 ASP n 1 97 ALA n 1 98 GLU n 1 99 ALA n 1 100 ILE n 1 101 THR n 1 102 HIS n 1 103 LEU n 1 104 PHE n 1 105 THR n 1 106 ASP n 1 107 VAL n 1 108 GLN n 1 109 ASN n 1 110 ARG n 1 111 TYR n 1 112 THR n 1 113 PHE n 1 114 ALA n 1 115 PHE n 1 116 GLY n 1 117 GLY n 1 118 ASN n 1 119 TYR n 1 120 ASP n 1 121 ARG n 1 122 LEU n 1 123 GLU n 1 124 GLN n 1 125 LEU n 1 126 ALA n 1 127 GLY n 1 128 ASN n 1 129 LEU n 1 130 ARG n 1 131 GLU n 1 132 ASN n 1 133 ILE n 1 134 GLU n 1 135 LEU n 1 136 GLY n 1 137 ASN n 1 138 GLY n 1 139 PRO n 1 140 LEU n 1 141 GLU n 1 142 GLU n 1 143 ALA n 1 144 ILE n 1 145 SER n 1 146 ALA n 1 147 LEU n 1 148 TYR n 1 149 TYR n 1 150 TYR n 1 151 SER n 1 152 THR n 1 153 GLY n 1 154 GLY n 1 155 THR n 1 156 GLN n 1 157 LEU n 1 158 PRO n 1 159 THR n 1 160 LEU n 1 161 ALA n 1 162 ILE n 1 163 SER n 1 164 PHE n 1 165 ILE n 1 166 ILE n 1 167 CYS n 1 168 ILE n 1 169 GLN n 1 170 MET n 1 171 ILE n 1 172 SER n 1 173 GLU n 1 174 ALA n 1 175 ALA n 1 176 ARG n 1 177 PHE n 1 178 GLN n 1 179 TYR n 1 180 ILE n 1 181 GLU n 1 182 GLY n 1 183 GLU n 1 184 MET n 1 185 ARG n 1 186 THR n 1 187 ARG n 1 188 ILE n 1 189 ARG n 1 190 TYR n 1 191 ASN n 1 192 ARG n 1 193 ARG n 1 194 SER n 1 195 ALA n 1 196 PRO n 1 197 ASP n 1 198 PRO n 1 199 SER n 1 200 VAL n 1 201 ILE n 1 202 THR n 1 203 LEU n 1 204 GLU n 1 205 ASN n 1 206 SER n 1 207 TRP n 1 208 GLY n 1 209 ARG n 1 210 LEU n 1 211 SER n 1 212 THR n 1 213 ALA n 1 214 ILE n 1 215 GLN n 1 216 GLU n 1 217 SER n 1 218 ASN n 1 219 GLN n 1 220 GLY n 1 221 ALA n 1 222 PHE n 1 223 ALA n 1 224 SER n 1 225 PRO n 1 226 ILE n 1 227 GLN n 1 228 LEU n 1 229 GLN n 1 230 ARG n 1 231 ARG n 1 232 ASN n 1 233 GLY n 1 234 SER n 1 235 LYS n 1 236 PHE n 1 237 SER n 1 238 VAL n 1 239 TYR n 1 240 ASP n 1 241 VAL n 1 242 SER n 1 243 ILE n 1 244 LEU n 1 245 ILE n 1 246 PRO n 1 247 ILE n 1 248 ILE n 1 249 ALA n 1 250 LEU n 1 251 MET n 1 252 VAL n 1 253 TYR n 1 254 ARG n 1 255 CYS n 1 256 ALA n 1 257 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Castor bean' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Ricinus communis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3988 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM101 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PUC18 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RICI_RICCO _struct_ref.pdbx_db_accession P02879 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QYPIINFTTAGATVQSYTNFIRAVRGRLTTGADVRHEIPVLPNRVGLPINQRFILVELSNHAELSVTLALDVTNAYVVGY RAGNSAYFFHPDNQEDAEAITHLFTDVQNRYTFAFGGNYDRLEQLAGNLRENIELGNGPLEEAISALYYYSTGGTQLPTL ARSFIICIQMISEAARFQYIEGEMRTRIRYNRRSAPDPSVITLENSWGRLSTAIQESNQGAFASPIQLQRRNGSKFSVYD VSILIPIIALMVYRCAP ; _struct_ref.pdbx_align_begin 40 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EJ5 _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 257 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02879 _struct_ref_seq.db_align_beg 40 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 296 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 261 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3EJ5 _struct_ref_seq_dif.mon_id ILE _struct_ref_seq_dif.pdbx_pdb_strand_id X _struct_ref_seq_dif.seq_num 162 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P02879 _struct_ref_seq_dif.db_mon_id ARG _struct_ref_seq_dif.pdbx_seq_db_seq_num 201 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 166 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EJ5 non-polymer . '4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid' ? 'C14 H15 N3 O4' 289.287 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3EJ5 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'tris-HCl, BME, EDTA, PEG 8000, pH 8.9, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2008-03-28 _diffrn_detector.details varimax # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3EJ5 _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 30.000 _reflns.number_obs 9083 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_chi_squared 0.998 _reflns.pdbx_redundancy 3.400 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.113 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.706 _reflns_shell.pdbx_redundancy 3.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 893 _reflns_shell.percent_possible_all 99.80 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3EJ5 _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 25.700 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.180 _refine.ls_number_reflns_obs 8936 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_R_work 0.194 _refine.ls_wR_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.266 _refine.ls_wR_factor_R_free 0.244 _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 467 _refine.B_iso_mean 25.539 _refine.aniso_B[1][1] -1.620 _refine.aniso_B[2][2] 0.330 _refine.aniso_B[3][3] 0.440 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -1.090 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.896 _refine.overall_SU_R_Cruickshank_DPI 1.591 _refine.overall_SU_R_free 0.335 _refine.pdbx_overall_ESU_R 1.561 _refine.pdbx_overall_ESU_R_Free 0.337 _refine.overall_SU_ML 0.214 _refine.overall_SU_B 19.935 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.832 _refine.B_iso_max 65.14 _refine.B_iso_min 5.77 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB entry 1RTC' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2024 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 2065 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 25.700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2089 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1391 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2844 1.237 1.959 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3348 0.882 3.001 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 256 5.284 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 103 35.865 23.301 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 324 15.084 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19 18.502 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 317 0.075 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2363 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 450 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 452 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1473 0.195 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1063 0.182 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1109 0.082 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 52 0.156 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 3 0.233 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 21 0.190 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.179 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1381 1.373 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 518 0.250 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2069 2.190 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 898 3.634 7.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 775 5.066 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.500 _refine_ls_shell.number_reflns_R_work 586 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.248 _refine_ls_shell.R_factor_R_free 0.416 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 619 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3EJ5 _struct.title 'complex of Ricin A chain and pyrimidine-based inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EJ5 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'protein inhibitor complex, Glycoprotein, Hydrolase, Lectin, Nucleotide-binding, Plant defense, Protein synthesis inhibitor, Toxin' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 13 ? THR A 29 ? THR X 17 THR X 33 1 ? 17 HELX_P HELX_P2 2 PRO A 48 ? GLN A 51 ? PRO X 52 GLN X 55 5 ? 4 HELX_P HELX_P3 3 ASN A 93 ? ILE A 100 ? ASN X 97 ILE X 104 1 ? 8 HELX_P HELX_P4 4 THR A 101 ? LEU A 103 ? THR X 105 LEU X 107 5 ? 3 HELX_P HELX_P5 5 ASN A 118 ? GLY A 127 ? ASN X 122 GLY X 131 1 ? 10 HELX_P HELX_P6 6 LEU A 129 ? ILE A 133 ? LEU X 133 ILE X 137 5 ? 5 HELX_P HELX_P7 7 GLY A 136 ? TYR A 150 ? GLY X 140 TYR X 154 1 ? 15 HELX_P HELX_P8 8 SER A 151 ? GLY A 153 ? SER X 155 GLY X 157 5 ? 3 HELX_P HELX_P9 9 GLN A 156 ? ILE A 171 ? GLN X 160 ILE X 175 1 ? 16 HELX_P HELX_P10 10 ILE A 171 ? PHE A 177 ? ILE X 175 PHE X 181 1 ? 7 HELX_P HELX_P11 11 PHE A 177 ? ASN A 191 ? PHE X 181 ASN X 195 1 ? 15 HELX_P HELX_P12 12 ASP A 197 ? SER A 206 ? ASP X 201 SER X 210 1 ? 10 HELX_P HELX_P13 13 SER A 206 ? GLU A 216 ? SER X 210 GLU X 220 1 ? 11 HELX_P HELX_P14 14 VAL A 241 ? ILE A 245 ? VAL X 245 ILE X 249 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 4 ? THR A 8 ? ILE X 8 THR X 12 A 2 PHE A 53 ? SER A 59 ? PHE X 57 SER X 63 A 3 SER A 65 ? ASP A 71 ? SER X 69 ASP X 75 A 4 VAL A 77 ? ALA A 82 ? VAL X 81 ALA X 86 A 5 SER A 85 ? PHE A 88 ? SER X 89 PHE X 92 A 6 ASN A 109 ? THR A 112 ? ASN X 113 THR X 116 B 1 VAL A 34 ? ARG A 35 ? VAL X 38 ARG X 39 B 2 ILE A 38 ? PRO A 39 ? ILE X 42 PRO X 43 C 1 ALA A 221 ? GLN A 229 ? ALA X 225 GLN X 233 C 2 LYS A 235 ? ASP A 240 ? LYS X 239 ASP X 244 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE X 9 O GLU A 57 ? O GLU X 61 A 2 3 N LEU A 58 ? N LEU X 62 O VAL A 66 ? O VAL X 70 A 3 4 N THR A 67 ? N THR X 71 O ARG A 81 ? O ARG X 85 A 4 5 N TYR A 80 ? N TYR X 84 O TYR A 87 ? O TYR X 91 A 5 6 N PHE A 88 ? N PHE X 92 O TYR A 111 ? O TYR X 115 B 1 2 N ARG A 35 ? N ARG X 39 O ILE A 38 ? O ILE X 42 C 1 2 N LEU A 228 ? N LEU X 232 O PHE A 236 ? O PHE X 240 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id X _struct_site.pdbx_auth_comp_id EJ5 _struct_site.pdbx_auth_seq_id 300 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE EJ5 X 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TYR A 76 ? TYR X 80 . ? 1_555 ? 2 AC1 8 VAL A 77 ? VAL X 81 . ? 1_555 ? 3 AC1 8 GLY A 117 ? GLY X 121 . ? 1_555 ? 4 AC1 8 TYR A 119 ? TYR X 123 . ? 1_555 ? 5 AC1 8 ILE A 168 ? ILE X 172 . ? 1_555 ? 6 AC1 8 SER A 172 ? SER X 176 . ? 1_555 ? 7 AC1 8 GLU A 173 ? GLU X 177 . ? 1_555 ? 8 AC1 8 ARG A 176 ? ARG X 180 . ? 1_555 ? # _atom_sites.entry_id 3EJ5 _atom_sites.fract_transf_matrix[1][1] 0.023451 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009941 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014705 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021865 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 5 5 GLN GLN X . n A 1 2 TYR 2 6 6 TYR TYR X . n A 1 3 PRO 3 7 7 PRO PRO X . n A 1 4 ILE 4 8 8 ILE ILE X . n A 1 5 ILE 5 9 9 ILE ILE X . n A 1 6 ASN 6 10 10 ASN ASN X . n A 1 7 PHE 7 11 11 PHE PHE X . n A 1 8 THR 8 12 12 THR THR X . n A 1 9 THR 9 13 13 THR THR X . n A 1 10 ALA 10 14 14 ALA ALA X . n A 1 11 GLY 11 15 15 GLY GLY X . n A 1 12 ALA 12 16 16 ALA ALA X . n A 1 13 THR 13 17 17 THR THR X . n A 1 14 VAL 14 18 18 VAL VAL X . n A 1 15 GLN 15 19 19 GLN GLN X . n A 1 16 SER 16 20 20 SER SER X . n A 1 17 TYR 17 21 21 TYR TYR X . n A 1 18 THR 18 22 22 THR THR X . n A 1 19 ASN 19 23 23 ASN ASN X . n A 1 20 PHE 20 24 24 PHE PHE X . n A 1 21 ILE 21 25 25 ILE ILE X . n A 1 22 ARG 22 26 26 ARG ARG X . n A 1 23 ALA 23 27 27 ALA ALA X . n A 1 24 VAL 24 28 28 VAL VAL X . n A 1 25 ARG 25 29 29 ARG ARG X . n A 1 26 GLY 26 30 30 GLY GLY X . n A 1 27 ARG 27 31 31 ARG ARG X . n A 1 28 LEU 28 32 32 LEU LEU X . n A 1 29 THR 29 33 33 THR THR X . n A 1 30 THR 30 34 34 THR THR X . n A 1 31 GLY 31 35 35 GLY GLY X . n A 1 32 ALA 32 36 36 ALA ALA X . n A 1 33 ASP 33 37 37 ASP ASP X . n A 1 34 VAL 34 38 38 VAL VAL X . n A 1 35 ARG 35 39 39 ARG ARG X . n A 1 36 HIS 36 40 40 HIS HIS X . n A 1 37 GLU 37 41 41 GLU GLU X . n A 1 38 ILE 38 42 42 ILE ILE X . n A 1 39 PRO 39 43 43 PRO PRO X . n A 1 40 VAL 40 44 44 VAL VAL X . n A 1 41 LEU 41 45 45 LEU LEU X . n A 1 42 PRO 42 46 46 PRO PRO X . n A 1 43 ASN 43 47 47 ASN ASN X . n A 1 44 ARG 44 48 48 ARG ARG X . n A 1 45 VAL 45 49 49 VAL VAL X . n A 1 46 GLY 46 50 50 GLY GLY X . n A 1 47 LEU 47 51 51 LEU LEU X . n A 1 48 PRO 48 52 52 PRO PRO X . n A 1 49 ILE 49 53 53 ILE ILE X . n A 1 50 ASN 50 54 54 ASN ASN X . n A 1 51 GLN 51 55 55 GLN GLN X . n A 1 52 ARG 52 56 56 ARG ARG X . n A 1 53 PHE 53 57 57 PHE PHE X . n A 1 54 ILE 54 58 58 ILE ILE X . n A 1 55 LEU 55 59 59 LEU LEU X . n A 1 56 VAL 56 60 60 VAL VAL X . n A 1 57 GLU 57 61 61 GLU GLU X . n A 1 58 LEU 58 62 62 LEU LEU X . n A 1 59 SER 59 63 63 SER SER X . n A 1 60 ASN 60 64 64 ASN ASN X . n A 1 61 HIS 61 65 65 HIS HIS X . n A 1 62 ALA 62 66 66 ALA ALA X . n A 1 63 GLU 63 67 67 GLU GLU X . n A 1 64 LEU 64 68 68 LEU LEU X . n A 1 65 SER 65 69 69 SER SER X . n A 1 66 VAL 66 70 70 VAL VAL X . n A 1 67 THR 67 71 71 THR THR X . n A 1 68 LEU 68 72 72 LEU LEU X . n A 1 69 ALA 69 73 73 ALA ALA X . n A 1 70 LEU 70 74 74 LEU LEU X . n A 1 71 ASP 71 75 75 ASP ASP X . n A 1 72 VAL 72 76 76 VAL VAL X . n A 1 73 THR 73 77 77 THR THR X . n A 1 74 ASN 74 78 78 ASN ASN X . n A 1 75 ALA 75 79 79 ALA ALA X . n A 1 76 TYR 76 80 80 TYR TYR X . n A 1 77 VAL 77 81 81 VAL VAL X . n A 1 78 VAL 78 82 82 VAL VAL X . n A 1 79 GLY 79 83 83 GLY GLY X . n A 1 80 TYR 80 84 84 TYR TYR X . n A 1 81 ARG 81 85 85 ARG ARG X . n A 1 82 ALA 82 86 86 ALA ALA X . n A 1 83 GLY 83 87 87 GLY GLY X . n A 1 84 ASN 84 88 88 ASN ASN X . n A 1 85 SER 85 89 89 SER SER X . n A 1 86 ALA 86 90 90 ALA ALA X . n A 1 87 TYR 87 91 91 TYR TYR X . n A 1 88 PHE 88 92 92 PHE PHE X . n A 1 89 PHE 89 93 93 PHE PHE X . n A 1 90 HIS 90 94 94 HIS HIS X . n A 1 91 PRO 91 95 95 PRO PRO X . n A 1 92 ASP 92 96 96 ASP ASP X . n A 1 93 ASN 93 97 97 ASN ASN X . n A 1 94 GLN 94 98 98 GLN GLN X . n A 1 95 GLU 95 99 99 GLU GLU X . n A 1 96 ASP 96 100 100 ASP ASP X . n A 1 97 ALA 97 101 101 ALA ALA X . n A 1 98 GLU 98 102 102 GLU GLU X . n A 1 99 ALA 99 103 103 ALA ALA X . n A 1 100 ILE 100 104 104 ILE ILE X . n A 1 101 THR 101 105 105 THR THR X . n A 1 102 HIS 102 106 106 HIS HIS X . n A 1 103 LEU 103 107 107 LEU LEU X . n A 1 104 PHE 104 108 108 PHE PHE X . n A 1 105 THR 105 109 109 THR THR X . n A 1 106 ASP 106 110 110 ASP ASP X . n A 1 107 VAL 107 111 111 VAL VAL X . n A 1 108 GLN 108 112 112 GLN GLN X . n A 1 109 ASN 109 113 113 ASN ASN X . n A 1 110 ARG 110 114 114 ARG ARG X . n A 1 111 TYR 111 115 115 TYR TYR X . n A 1 112 THR 112 116 116 THR THR X . n A 1 113 PHE 113 117 117 PHE PHE X . n A 1 114 ALA 114 118 118 ALA ALA X . n A 1 115 PHE 115 119 119 PHE PHE X . n A 1 116 GLY 116 120 120 GLY GLY X . n A 1 117 GLY 117 121 121 GLY GLY X . n A 1 118 ASN 118 122 122 ASN ASN X . n A 1 119 TYR 119 123 123 TYR TYR X . n A 1 120 ASP 120 124 124 ASP ASP X . n A 1 121 ARG 121 125 125 ARG ARG X . n A 1 122 LEU 122 126 126 LEU LEU X . n A 1 123 GLU 123 127 127 GLU GLU X . n A 1 124 GLN 124 128 128 GLN GLN X . n A 1 125 LEU 125 129 129 LEU LEU X . n A 1 126 ALA 126 130 130 ALA ALA X . n A 1 127 GLY 127 131 131 GLY GLY X . n A 1 128 ASN 128 132 132 ASN ASN X . n A 1 129 LEU 129 133 133 LEU LEU X . n A 1 130 ARG 130 134 134 ARG ARG X . n A 1 131 GLU 131 135 135 GLU GLU X . n A 1 132 ASN 132 136 136 ASN ASN X . n A 1 133 ILE 133 137 137 ILE ILE X . n A 1 134 GLU 134 138 138 GLU GLU X . n A 1 135 LEU 135 139 139 LEU LEU X . n A 1 136 GLY 136 140 140 GLY GLY X . n A 1 137 ASN 137 141 141 ASN ASN X . n A 1 138 GLY 138 142 142 GLY GLY X . n A 1 139 PRO 139 143 143 PRO PRO X . n A 1 140 LEU 140 144 144 LEU LEU X . n A 1 141 GLU 141 145 145 GLU GLU X . n A 1 142 GLU 142 146 146 GLU GLU X . n A 1 143 ALA 143 147 147 ALA ALA X . n A 1 144 ILE 144 148 148 ILE ILE X . n A 1 145 SER 145 149 149 SER SER X . n A 1 146 ALA 146 150 150 ALA ALA X . n A 1 147 LEU 147 151 151 LEU LEU X . n A 1 148 TYR 148 152 152 TYR TYR X . n A 1 149 TYR 149 153 153 TYR TYR X . n A 1 150 TYR 150 154 154 TYR TYR X . n A 1 151 SER 151 155 155 SER SER X . n A 1 152 THR 152 156 156 THR THR X . n A 1 153 GLY 153 157 157 GLY GLY X . n A 1 154 GLY 154 158 158 GLY GLY X . n A 1 155 THR 155 159 159 THR THR X . n A 1 156 GLN 156 160 160 GLN GLN X . n A 1 157 LEU 157 161 161 LEU LEU X . n A 1 158 PRO 158 162 162 PRO PRO X . n A 1 159 THR 159 163 163 THR THR X . n A 1 160 LEU 160 164 164 LEU LEU X . n A 1 161 ALA 161 165 165 ALA ALA X . n A 1 162 ILE 162 166 166 ILE ILE X . n A 1 163 SER 163 167 167 SER SER X . n A 1 164 PHE 164 168 168 PHE PHE X . n A 1 165 ILE 165 169 169 ILE ILE X . n A 1 166 ILE 166 170 170 ILE ILE X . n A 1 167 CYS 167 171 171 CYS CYS X . n A 1 168 ILE 168 172 172 ILE ILE X . n A 1 169 GLN 169 173 173 GLN GLN X . n A 1 170 MET 170 174 174 MET MET X . n A 1 171 ILE 171 175 175 ILE ILE X . n A 1 172 SER 172 176 176 SER SER X . n A 1 173 GLU 173 177 177 GLU GLU X . n A 1 174 ALA 174 178 178 ALA ALA X . n A 1 175 ALA 175 179 179 ALA ALA X . n A 1 176 ARG 176 180 180 ARG ARG X . n A 1 177 PHE 177 181 181 PHE PHE X . n A 1 178 GLN 178 182 182 GLN GLN X . n A 1 179 TYR 179 183 183 TYR TYR X . n A 1 180 ILE 180 184 184 ILE ILE X . n A 1 181 GLU 181 185 185 GLU GLU X . n A 1 182 GLY 182 186 186 GLY GLY X . n A 1 183 GLU 183 187 187 GLU GLU X . n A 1 184 MET 184 188 188 MET MET X . n A 1 185 ARG 185 189 189 ARG ARG X . n A 1 186 THR 186 190 190 THR THR X . n A 1 187 ARG 187 191 191 ARG ARG X . n A 1 188 ILE 188 192 192 ILE ILE X . n A 1 189 ARG 189 193 193 ARG ARG X . n A 1 190 TYR 190 194 194 TYR TYR X . n A 1 191 ASN 191 195 195 ASN ASN X . n A 1 192 ARG 192 196 196 ARG ARG X . n A 1 193 ARG 193 197 197 ARG ARG X . n A 1 194 SER 194 198 198 SER SER X . n A 1 195 ALA 195 199 199 ALA ALA X . n A 1 196 PRO 196 200 200 PRO PRO X . n A 1 197 ASP 197 201 201 ASP ASP X . n A 1 198 PRO 198 202 202 PRO PRO X . n A 1 199 SER 199 203 203 SER SER X . n A 1 200 VAL 200 204 204 VAL VAL X . n A 1 201 ILE 201 205 205 ILE ILE X . n A 1 202 THR 202 206 206 THR THR X . n A 1 203 LEU 203 207 207 LEU LEU X . n A 1 204 GLU 204 208 208 GLU GLU X . n A 1 205 ASN 205 209 209 ASN ASN X . n A 1 206 SER 206 210 210 SER SER X . n A 1 207 TRP 207 211 211 TRP TRP X . n A 1 208 GLY 208 212 212 GLY GLY X . n A 1 209 ARG 209 213 213 ARG ARG X . n A 1 210 LEU 210 214 214 LEU LEU X . n A 1 211 SER 211 215 215 SER SER X . n A 1 212 THR 212 216 216 THR THR X . n A 1 213 ALA 213 217 217 ALA ALA X . n A 1 214 ILE 214 218 218 ILE ILE X . n A 1 215 GLN 215 219 219 GLN GLN X . n A 1 216 GLU 216 220 220 GLU GLU X . n A 1 217 SER 217 221 221 SER SER X . n A 1 218 ASN 218 222 222 ASN ASN X . n A 1 219 GLN 219 223 223 GLN GLN X . n A 1 220 GLY 220 224 224 GLY GLY X . n A 1 221 ALA 221 225 225 ALA ALA X . n A 1 222 PHE 222 226 226 PHE PHE X . n A 1 223 ALA 223 227 227 ALA ALA X . n A 1 224 SER 224 228 228 SER SER X . n A 1 225 PRO 225 229 229 PRO PRO X . n A 1 226 ILE 226 230 230 ILE ILE X . n A 1 227 GLN 227 231 231 GLN GLN X . n A 1 228 LEU 228 232 232 LEU LEU X . n A 1 229 GLN 229 233 233 GLN GLN X . n A 1 230 ARG 230 234 234 ARG ARG X . n A 1 231 ARG 231 235 235 ARG ARG X . n A 1 232 ASN 232 236 236 ASN ASN X . n A 1 233 GLY 233 237 237 GLY GLY X . n A 1 234 SER 234 238 238 SER SER X . n A 1 235 LYS 235 239 239 LYS LYS X . n A 1 236 PHE 236 240 240 PHE PHE X . n A 1 237 SER 237 241 241 SER SER X . n A 1 238 VAL 238 242 242 VAL VAL X . n A 1 239 TYR 239 243 243 TYR TYR X . n A 1 240 ASP 240 244 244 ASP ASP X . n A 1 241 VAL 241 245 245 VAL VAL X . n A 1 242 SER 242 246 246 SER SER X . n A 1 243 ILE 243 247 247 ILE ILE X . n A 1 244 LEU 244 248 248 LEU LEU X . n A 1 245 ILE 245 249 249 ILE ILE X . n A 1 246 PRO 246 250 250 PRO PRO X . n A 1 247 ILE 247 251 251 ILE ILE X . n A 1 248 ILE 248 252 252 ILE ILE X . n A 1 249 ALA 249 253 253 ALA ALA X . n A 1 250 LEU 250 254 254 LEU LEU X . n A 1 251 MET 251 255 255 MET MET X . n A 1 252 VAL 252 256 256 VAL VAL X . n A 1 253 TYR 253 257 257 TYR TYR X . n A 1 254 ARG 254 258 258 ARG ARG X . n A 1 255 CYS 255 259 259 CYS CYS X . n A 1 256 ALA 256 260 260 ALA ALA X . n A 1 257 PRO 257 261 261 PRO PRO X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EJ5 1 300 300 EJ5 EJ5 X . C 3 HOH 1 301 1 HOH HOH X . C 3 HOH 2 302 2 HOH HOH X . C 3 HOH 3 303 3 HOH HOH X . C 3 HOH 4 304 4 HOH HOH X . C 3 HOH 5 305 5 HOH HOH X . C 3 HOH 6 306 6 HOH HOH X . C 3 HOH 7 307 7 HOH HOH X . C 3 HOH 8 308 8 HOH HOH X . C 3 HOH 9 309 9 HOH HOH X . C 3 HOH 10 310 10 HOH HOH X . C 3 HOH 11 311 11 HOH HOH X . C 3 HOH 12 312 12 HOH HOH X . C 3 HOH 13 313 13 HOH HOH X . C 3 HOH 14 314 14 HOH HOH X . C 3 HOH 15 315 15 HOH HOH X . C 3 HOH 16 316 16 HOH HOH X . C 3 HOH 17 317 17 HOH HOH X . C 3 HOH 18 318 18 HOH HOH X . C 3 HOH 19 319 19 HOH HOH X . C 3 HOH 20 320 20 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ref_seq_dif.details' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -2.8310 _pdbx_refine_tls.origin_y 0.6917 _pdbx_refine_tls.origin_z 8.0857 _pdbx_refine_tls.T[1][1] -0.0350 _pdbx_refine_tls.T[2][2] -0.0290 _pdbx_refine_tls.T[3][3] -0.0391 _pdbx_refine_tls.T[1][2] -0.0322 _pdbx_refine_tls.T[1][3] 0.0135 _pdbx_refine_tls.T[2][3] -0.0140 _pdbx_refine_tls.L[1][1] 2.0249 _pdbx_refine_tls.L[2][2] 1.6659 _pdbx_refine_tls.L[3][3] 1.2561 _pdbx_refine_tls.L[1][2] -0.8068 _pdbx_refine_tls.L[1][3] 0.3285 _pdbx_refine_tls.L[2][3] -0.1689 _pdbx_refine_tls.S[1][1] -0.0313 _pdbx_refine_tls.S[2][2] 0.0112 _pdbx_refine_tls.S[3][3] 0.0201 _pdbx_refine_tls.S[1][2] 0.0118 _pdbx_refine_tls.S[1][3] 0.0725 _pdbx_refine_tls.S[2][3] -0.0210 _pdbx_refine_tls.S[2][1] 0.0997 _pdbx_refine_tls.S[3][1] 0.0044 _pdbx_refine_tls.S[3][2] 0.1251 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id X _pdbx_refine_tls_group.end_auth_asym_id X _pdbx_refine_tls_group.end_auth_seq_id 261 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? 7 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id X _pdbx_validate_torsion.auth_seq_id 79 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 53.21 _pdbx_validate_torsion.psi 15.26 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X ARG 26 ? CD ? A ARG 22 CD 2 1 Y 1 X ARG 26 ? NE ? A ARG 22 NE 3 1 Y 1 X ARG 26 ? CZ ? A ARG 22 CZ 4 1 Y 1 X ARG 26 ? NH1 ? A ARG 22 NH1 5 1 Y 1 X ARG 26 ? NH2 ? A ARG 22 NH2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EJ5 CAF C Y N 88 EJ5 CAH C Y N 89 EJ5 CAR C Y N 90 EJ5 CAO C N N 91 EJ5 OAD O N N 92 EJ5 OAB O N N 93 EJ5 CAI C Y N 94 EJ5 CAG C Y N 95 EJ5 CAQ C Y N 96 EJ5 CAK C N N 97 EJ5 CAJ C N N 98 EJ5 CAL C N N 99 EJ5 CAT C N N 100 EJ5 CAS C N N 101 EJ5 OAE O N N 102 EJ5 NAM N N N 103 EJ5 CAP C N N 104 EJ5 NAA N N N 105 EJ5 NAN N N N 106 EJ5 CAU C N N 107 EJ5 OAC O N N 108 EJ5 HAF H N N 109 EJ5 HAH H N N 110 EJ5 HOAD H N N 111 EJ5 HAG H N N 112 EJ5 HAK H N N 113 EJ5 HAKA H N N 114 EJ5 HAJ H N N 115 EJ5 HAJA H N N 116 EJ5 HAL H N N 117 EJ5 HNAA H N N 118 EJ5 HNAB H N N 119 EJ5 HAI H N N 120 EJ5 H13 H N N 121 EJ5 H14 H N N 122 EJ5 HNAN H N N 123 GLN N N N N 124 GLN CA C N S 125 GLN C C N N 126 GLN O O N N 127 GLN CB C N N 128 GLN CG C N N 129 GLN CD C N N 130 GLN OE1 O N N 131 GLN NE2 N N N 132 GLN OXT O N N 133 GLN H H N N 134 GLN H2 H N N 135 GLN HA H N N 136 GLN HB2 H N N 137 GLN HB3 H N N 138 GLN HG2 H N N 139 GLN HG3 H N N 140 GLN HE21 H N N 141 GLN HE22 H N N 142 GLN HXT H N N 143 GLU N N N N 144 GLU CA C N S 145 GLU C C N N 146 GLU O O N N 147 GLU CB C N N 148 GLU CG C N N 149 GLU CD C N N 150 GLU OE1 O N N 151 GLU OE2 O N N 152 GLU OXT O N N 153 GLU H H N N 154 GLU H2 H N N 155 GLU HA H N N 156 GLU HB2 H N N 157 GLU HB3 H N N 158 GLU HG2 H N N 159 GLU HG3 H N N 160 GLU HE2 H N N 161 GLU HXT H N N 162 GLY N N N N 163 GLY CA C N N 164 GLY C C N N 165 GLY O O N N 166 GLY OXT O N N 167 GLY H H N N 168 GLY H2 H N N 169 GLY HA2 H N N 170 GLY HA3 H N N 171 GLY HXT H N N 172 HIS N N N N 173 HIS CA C N S 174 HIS C C N N 175 HIS O O N N 176 HIS CB C N N 177 HIS CG C Y N 178 HIS ND1 N Y N 179 HIS CD2 C Y N 180 HIS CE1 C Y N 181 HIS NE2 N Y N 182 HIS OXT O N N 183 HIS H H N N 184 HIS H2 H N N 185 HIS HA H N N 186 HIS HB2 H N N 187 HIS HB3 H N N 188 HIS HD1 H N N 189 HIS HD2 H N N 190 HIS HE1 H N N 191 HIS HE2 H N N 192 HIS HXT H N N 193 HOH O O N N 194 HOH H1 H N N 195 HOH H2 H N N 196 ILE N N N N 197 ILE CA C N S 198 ILE C C N N 199 ILE O O N N 200 ILE CB C N S 201 ILE CG1 C N N 202 ILE CG2 C N N 203 ILE CD1 C N N 204 ILE OXT O N N 205 ILE H H N N 206 ILE H2 H N N 207 ILE HA H N N 208 ILE HB H N N 209 ILE HG12 H N N 210 ILE HG13 H N N 211 ILE HG21 H N N 212 ILE HG22 H N N 213 ILE HG23 H N N 214 ILE HD11 H N N 215 ILE HD12 H N N 216 ILE HD13 H N N 217 ILE HXT H N N 218 LEU N N N N 219 LEU CA C N S 220 LEU C C N N 221 LEU O O N N 222 LEU CB C N N 223 LEU CG C N N 224 LEU CD1 C N N 225 LEU CD2 C N N 226 LEU OXT O N N 227 LEU H H N N 228 LEU H2 H N N 229 LEU HA H N N 230 LEU HB2 H N N 231 LEU HB3 H N N 232 LEU HG H N N 233 LEU HD11 H N N 234 LEU HD12 H N N 235 LEU HD13 H N N 236 LEU HD21 H N N 237 LEU HD22 H N N 238 LEU HD23 H N N 239 LEU HXT H N N 240 LYS N N N N 241 LYS CA C N S 242 LYS C C N N 243 LYS O O N N 244 LYS CB C N N 245 LYS CG C N N 246 LYS CD C N N 247 LYS CE C N N 248 LYS NZ N N N 249 LYS OXT O N N 250 LYS H H N N 251 LYS H2 H N N 252 LYS HA H N N 253 LYS HB2 H N N 254 LYS HB3 H N N 255 LYS HG2 H N N 256 LYS HG3 H N N 257 LYS HD2 H N N 258 LYS HD3 H N N 259 LYS HE2 H N N 260 LYS HE3 H N N 261 LYS HZ1 H N N 262 LYS HZ2 H N N 263 LYS HZ3 H N N 264 LYS HXT H N N 265 MET N N N N 266 MET CA C N S 267 MET C C N N 268 MET O O N N 269 MET CB C N N 270 MET CG C N N 271 MET SD S N N 272 MET CE C N N 273 MET OXT O N N 274 MET H H N N 275 MET H2 H N N 276 MET HA H N N 277 MET HB2 H N N 278 MET HB3 H N N 279 MET HG2 H N N 280 MET HG3 H N N 281 MET HE1 H N N 282 MET HE2 H N N 283 MET HE3 H N N 284 MET HXT H N N 285 PHE N N N N 286 PHE CA C N S 287 PHE C C N N 288 PHE O O N N 289 PHE CB C N N 290 PHE CG C Y N 291 PHE CD1 C Y N 292 PHE CD2 C Y N 293 PHE CE1 C Y N 294 PHE CE2 C Y N 295 PHE CZ C Y N 296 PHE OXT O N N 297 PHE H H N N 298 PHE H2 H N N 299 PHE HA H N N 300 PHE HB2 H N N 301 PHE HB3 H N N 302 PHE HD1 H N N 303 PHE HD2 H N N 304 PHE HE1 H N N 305 PHE HE2 H N N 306 PHE HZ H N N 307 PHE HXT H N N 308 PRO N N N N 309 PRO CA C N S 310 PRO C C N N 311 PRO O O N N 312 PRO CB C N N 313 PRO CG C N N 314 PRO CD C N N 315 PRO OXT O N N 316 PRO H H N N 317 PRO HA H N N 318 PRO HB2 H N N 319 PRO HB3 H N N 320 PRO HG2 H N N 321 PRO HG3 H N N 322 PRO HD2 H N N 323 PRO HD3 H N N 324 PRO HXT H N N 325 SER N N N N 326 SER CA C N S 327 SER C C N N 328 SER O O N N 329 SER CB C N N 330 SER OG O N N 331 SER OXT O N N 332 SER H H N N 333 SER H2 H N N 334 SER HA H N N 335 SER HB2 H N N 336 SER HB3 H N N 337 SER HG H N N 338 SER HXT H N N 339 THR N N N N 340 THR CA C N S 341 THR C C N N 342 THR O O N N 343 THR CB C N R 344 THR OG1 O N N 345 THR CG2 C N N 346 THR OXT O N N 347 THR H H N N 348 THR H2 H N N 349 THR HA H N N 350 THR HB H N N 351 THR HG1 H N N 352 THR HG21 H N N 353 THR HG22 H N N 354 THR HG23 H N N 355 THR HXT H N N 356 TRP N N N N 357 TRP CA C N S 358 TRP C C N N 359 TRP O O N N 360 TRP CB C N N 361 TRP CG C Y N 362 TRP CD1 C Y N 363 TRP CD2 C Y N 364 TRP NE1 N Y N 365 TRP CE2 C Y N 366 TRP CE3 C Y N 367 TRP CZ2 C Y N 368 TRP CZ3 C Y N 369 TRP CH2 C Y N 370 TRP OXT O N N 371 TRP H H N N 372 TRP H2 H N N 373 TRP HA H N N 374 TRP HB2 H N N 375 TRP HB3 H N N 376 TRP HD1 H N N 377 TRP HE1 H N N 378 TRP HE3 H N N 379 TRP HZ2 H N N 380 TRP HZ3 H N N 381 TRP HH2 H N N 382 TRP HXT H N N 383 TYR N N N N 384 TYR CA C N S 385 TYR C C N N 386 TYR O O N N 387 TYR CB C N N 388 TYR CG C Y N 389 TYR CD1 C Y N 390 TYR CD2 C Y N 391 TYR CE1 C Y N 392 TYR CE2 C Y N 393 TYR CZ C Y N 394 TYR OH O N N 395 TYR OXT O N N 396 TYR H H N N 397 TYR H2 H N N 398 TYR HA H N N 399 TYR HB2 H N N 400 TYR HB3 H N N 401 TYR HD1 H N N 402 TYR HD2 H N N 403 TYR HE1 H N N 404 TYR HE2 H N N 405 TYR HH H N N 406 TYR HXT H N N 407 VAL N N N N 408 VAL CA C N S 409 VAL C C N N 410 VAL O O N N 411 VAL CB C N N 412 VAL CG1 C N N 413 VAL CG2 C N N 414 VAL OXT O N N 415 VAL H H N N 416 VAL H2 H N N 417 VAL HA H N N 418 VAL HB H N N 419 VAL HG11 H N N 420 VAL HG12 H N N 421 VAL HG13 H N N 422 VAL HG21 H N N 423 VAL HG22 H N N 424 VAL HG23 H N N 425 VAL HXT H N N 426 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EJ5 CAF CAH sing Y N 83 EJ5 CAF HAF sing N N 84 EJ5 CAH CAR doub Y N 85 EJ5 CAH HAH sing N N 86 EJ5 CAR CAO sing N N 87 EJ5 CAO OAD sing N N 88 EJ5 OAD HOAD sing N N 89 EJ5 OAB CAO doub N N 90 EJ5 CAI CAR sing Y N 91 EJ5 CAG CAI doub Y N 92 EJ5 CAG HAG sing N N 93 EJ5 CAQ CAF doub Y N 94 EJ5 CAQ CAG sing Y N 95 EJ5 CAK CAQ sing N N 96 EJ5 CAK CAJ sing N N 97 EJ5 CAK HAK sing N N 98 EJ5 CAK HAKA sing N N 99 EJ5 CAJ CAL sing N N 100 EJ5 CAJ HAJ sing N N 101 EJ5 CAJ HAJA sing N N 102 EJ5 CAL CAT sing N N 103 EJ5 CAL HAL sing N N 104 EJ5 CAT CAU sing N N 105 EJ5 CAS CAT doub N N 106 EJ5 CAS NAM sing N N 107 EJ5 OAE CAS sing N N 108 EJ5 NAM CAP doub N N 109 EJ5 CAP NAN sing N N 110 EJ5 CAP NAA sing N N 111 EJ5 NAA HNAA sing N N 112 EJ5 NAA HNAB sing N N 113 EJ5 CAU NAN sing N N 114 EJ5 CAU OAC doub N N 115 EJ5 CAI HAI sing N N 116 EJ5 CAL H13 sing N N 117 EJ5 OAE H14 sing N N 118 EJ5 NAN HNAN sing N N 119 GLN N CA sing N N 120 GLN N H sing N N 121 GLN N H2 sing N N 122 GLN CA C sing N N 123 GLN CA CB sing N N 124 GLN CA HA sing N N 125 GLN C O doub N N 126 GLN C OXT sing N N 127 GLN CB CG sing N N 128 GLN CB HB2 sing N N 129 GLN CB HB3 sing N N 130 GLN CG CD sing N N 131 GLN CG HG2 sing N N 132 GLN CG HG3 sing N N 133 GLN CD OE1 doub N N 134 GLN CD NE2 sing N N 135 GLN NE2 HE21 sing N N 136 GLN NE2 HE22 sing N N 137 GLN OXT HXT sing N N 138 GLU N CA sing N N 139 GLU N H sing N N 140 GLU N H2 sing N N 141 GLU CA C sing N N 142 GLU CA CB sing N N 143 GLU CA HA sing N N 144 GLU C O doub N N 145 GLU C OXT sing N N 146 GLU CB CG sing N N 147 GLU CB HB2 sing N N 148 GLU CB HB3 sing N N 149 GLU CG CD sing N N 150 GLU CG HG2 sing N N 151 GLU CG HG3 sing N N 152 GLU CD OE1 doub N N 153 GLU CD OE2 sing N N 154 GLU OE2 HE2 sing N N 155 GLU OXT HXT sing N N 156 GLY N CA sing N N 157 GLY N H sing N N 158 GLY N H2 sing N N 159 GLY CA C sing N N 160 GLY CA HA2 sing N N 161 GLY CA HA3 sing N N 162 GLY C O doub N N 163 GLY C OXT sing N N 164 GLY OXT HXT sing N N 165 HIS N CA sing N N 166 HIS N H sing N N 167 HIS N H2 sing N N 168 HIS CA C sing N N 169 HIS CA CB sing N N 170 HIS CA HA sing N N 171 HIS C O doub N N 172 HIS C OXT sing N N 173 HIS CB CG sing N N 174 HIS CB HB2 sing N N 175 HIS CB HB3 sing N N 176 HIS CG ND1 sing Y N 177 HIS CG CD2 doub Y N 178 HIS ND1 CE1 doub Y N 179 HIS ND1 HD1 sing N N 180 HIS CD2 NE2 sing Y N 181 HIS CD2 HD2 sing N N 182 HIS CE1 NE2 sing Y N 183 HIS CE1 HE1 sing N N 184 HIS NE2 HE2 sing N N 185 HIS OXT HXT sing N N 186 HOH O H1 sing N N 187 HOH O H2 sing N N 188 ILE N CA sing N N 189 ILE N H sing N N 190 ILE N H2 sing N N 191 ILE CA C sing N N 192 ILE CA CB sing N N 193 ILE CA HA sing N N 194 ILE C O doub N N 195 ILE C OXT sing N N 196 ILE CB CG1 sing N N 197 ILE CB CG2 sing N N 198 ILE CB HB sing N N 199 ILE CG1 CD1 sing N N 200 ILE CG1 HG12 sing N N 201 ILE CG1 HG13 sing N N 202 ILE CG2 HG21 sing N N 203 ILE CG2 HG22 sing N N 204 ILE CG2 HG23 sing N N 205 ILE CD1 HD11 sing N N 206 ILE CD1 HD12 sing N N 207 ILE CD1 HD13 sing N N 208 ILE OXT HXT sing N N 209 LEU N CA sing N N 210 LEU N H sing N N 211 LEU N H2 sing N N 212 LEU CA C sing N N 213 LEU CA CB sing N N 214 LEU CA HA sing N N 215 LEU C O doub N N 216 LEU C OXT sing N N 217 LEU CB CG sing N N 218 LEU CB HB2 sing N N 219 LEU CB HB3 sing N N 220 LEU CG CD1 sing N N 221 LEU CG CD2 sing N N 222 LEU CG HG sing N N 223 LEU CD1 HD11 sing N N 224 LEU CD1 HD12 sing N N 225 LEU CD1 HD13 sing N N 226 LEU CD2 HD21 sing N N 227 LEU CD2 HD22 sing N N 228 LEU CD2 HD23 sing N N 229 LEU OXT HXT sing N N 230 LYS N CA sing N N 231 LYS N H sing N N 232 LYS N H2 sing N N 233 LYS CA C sing N N 234 LYS CA CB sing N N 235 LYS CA HA sing N N 236 LYS C O doub N N 237 LYS C OXT sing N N 238 LYS CB CG sing N N 239 LYS CB HB2 sing N N 240 LYS CB HB3 sing N N 241 LYS CG CD sing N N 242 LYS CG HG2 sing N N 243 LYS CG HG3 sing N N 244 LYS CD CE sing N N 245 LYS CD HD2 sing N N 246 LYS CD HD3 sing N N 247 LYS CE NZ sing N N 248 LYS CE HE2 sing N N 249 LYS CE HE3 sing N N 250 LYS NZ HZ1 sing N N 251 LYS NZ HZ2 sing N N 252 LYS NZ HZ3 sing N N 253 LYS OXT HXT sing N N 254 MET N CA sing N N 255 MET N H sing N N 256 MET N H2 sing N N 257 MET CA C sing N N 258 MET CA CB sing N N 259 MET CA HA sing N N 260 MET C O doub N N 261 MET C OXT sing N N 262 MET CB CG sing N N 263 MET CB HB2 sing N N 264 MET CB HB3 sing N N 265 MET CG SD sing N N 266 MET CG HG2 sing N N 267 MET CG HG3 sing N N 268 MET SD CE sing N N 269 MET CE HE1 sing N N 270 MET CE HE2 sing N N 271 MET CE HE3 sing N N 272 MET OXT HXT sing N N 273 PHE N CA sing N N 274 PHE N H sing N N 275 PHE N H2 sing N N 276 PHE CA C sing N N 277 PHE CA CB sing N N 278 PHE CA HA sing N N 279 PHE C O doub N N 280 PHE C OXT sing N N 281 PHE CB CG sing N N 282 PHE CB HB2 sing N N 283 PHE CB HB3 sing N N 284 PHE CG CD1 doub Y N 285 PHE CG CD2 sing Y N 286 PHE CD1 CE1 sing Y N 287 PHE CD1 HD1 sing N N 288 PHE CD2 CE2 doub Y N 289 PHE CD2 HD2 sing N N 290 PHE CE1 CZ doub Y N 291 PHE CE1 HE1 sing N N 292 PHE CE2 CZ sing Y N 293 PHE CE2 HE2 sing N N 294 PHE CZ HZ sing N N 295 PHE OXT HXT sing N N 296 PRO N CA sing N N 297 PRO N CD sing N N 298 PRO N H sing N N 299 PRO CA C sing N N 300 PRO CA CB sing N N 301 PRO CA HA sing N N 302 PRO C O doub N N 303 PRO C OXT sing N N 304 PRO CB CG sing N N 305 PRO CB HB2 sing N N 306 PRO CB HB3 sing N N 307 PRO CG CD sing N N 308 PRO CG HG2 sing N N 309 PRO CG HG3 sing N N 310 PRO CD HD2 sing N N 311 PRO CD HD3 sing N N 312 PRO OXT HXT sing N N 313 SER N CA sing N N 314 SER N H sing N N 315 SER N H2 sing N N 316 SER CA C sing N N 317 SER CA CB sing N N 318 SER CA HA sing N N 319 SER C O doub N N 320 SER C OXT sing N N 321 SER CB OG sing N N 322 SER CB HB2 sing N N 323 SER CB HB3 sing N N 324 SER OG HG sing N N 325 SER OXT HXT sing N N 326 THR N CA sing N N 327 THR N H sing N N 328 THR N H2 sing N N 329 THR CA C sing N N 330 THR CA CB sing N N 331 THR CA HA sing N N 332 THR C O doub N N 333 THR C OXT sing N N 334 THR CB OG1 sing N N 335 THR CB CG2 sing N N 336 THR CB HB sing N N 337 THR OG1 HG1 sing N N 338 THR CG2 HG21 sing N N 339 THR CG2 HG22 sing N N 340 THR CG2 HG23 sing N N 341 THR OXT HXT sing N N 342 TRP N CA sing N N 343 TRP N H sing N N 344 TRP N H2 sing N N 345 TRP CA C sing N N 346 TRP CA CB sing N N 347 TRP CA HA sing N N 348 TRP C O doub N N 349 TRP C OXT sing N N 350 TRP CB CG sing N N 351 TRP CB HB2 sing N N 352 TRP CB HB3 sing N N 353 TRP CG CD1 doub Y N 354 TRP CG CD2 sing Y N 355 TRP CD1 NE1 sing Y N 356 TRP CD1 HD1 sing N N 357 TRP CD2 CE2 doub Y N 358 TRP CD2 CE3 sing Y N 359 TRP NE1 CE2 sing Y N 360 TRP NE1 HE1 sing N N 361 TRP CE2 CZ2 sing Y N 362 TRP CE3 CZ3 doub Y N 363 TRP CE3 HE3 sing N N 364 TRP CZ2 CH2 doub Y N 365 TRP CZ2 HZ2 sing N N 366 TRP CZ3 CH2 sing Y N 367 TRP CZ3 HZ3 sing N N 368 TRP CH2 HH2 sing N N 369 TRP OXT HXT sing N N 370 TYR N CA sing N N 371 TYR N H sing N N 372 TYR N H2 sing N N 373 TYR CA C sing N N 374 TYR CA CB sing N N 375 TYR CA HA sing N N 376 TYR C O doub N N 377 TYR C OXT sing N N 378 TYR CB CG sing N N 379 TYR CB HB2 sing N N 380 TYR CB HB3 sing N N 381 TYR CG CD1 doub Y N 382 TYR CG CD2 sing Y N 383 TYR CD1 CE1 sing Y N 384 TYR CD1 HD1 sing N N 385 TYR CD2 CE2 doub Y N 386 TYR CD2 HD2 sing N N 387 TYR CE1 CZ doub Y N 388 TYR CE1 HE1 sing N N 389 TYR CE2 CZ sing Y N 390 TYR CE2 HE2 sing N N 391 TYR CZ OH sing N N 392 TYR OH HH sing N N 393 TYR OXT HXT sing N N 394 VAL N CA sing N N 395 VAL N H sing N N 396 VAL N H2 sing N N 397 VAL CA C sing N N 398 VAL CA CB sing N N 399 VAL CA HA sing N N 400 VAL C O doub N N 401 VAL C OXT sing N N 402 VAL CB CG1 sing N N 403 VAL CB CG2 sing N N 404 VAL CB HB sing N N 405 VAL CG1 HG11 sing N N 406 VAL CG1 HG12 sing N N 407 VAL CG1 HG13 sing N N 408 VAL CG2 HG21 sing N N 409 VAL CG2 HG22 sing N N 410 VAL CG2 HG23 sing N N 411 VAL OXT HXT sing N N 412 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid' EJ5 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1RTC _pdbx_initial_refinement_model.details 'PDB entry 1RTC' #