data_3ELO # _entry.id 3ELO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3ELO RCSB RCSB049478 WWPDB D_1000049478 # _pdbx_database_status.entry_id 3ELO _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-09-22 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, W.' 1 'Yi, L.' 2 'Feng, Y.' 3 'Chen, L.' 4 'Liu, J.' 5 # _citation.id primary _citation.title 'Structural insight into the activation mechanism of human pancreatic prophospholipase A2' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 284 _citation.page_first 16659 _citation.page_last 16666 _citation.year 2009 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19297324 _citation.pdbx_database_id_DOI 10.1074/jbc.M808029200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Xu, W.' 1 primary 'Yi, L.' 2 primary 'Feng, Y.' 3 primary 'Chen, L.' 4 primary 'Liu, J.' 5 # _cell.length_a 56.549 _cell.length_b 56.549 _cell.length_c 60.631 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3ELO _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63' _symmetry.entry_id 3ELO _symmetry.Int_Tables_number 173 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phospholipase A2' 14870.794 1 3.1.1.4 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 164 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Phosphatidylcholine 2-acylhydrolase, Group IB phospholipase A2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTY SYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS ; _entity_poly.pdbx_seq_one_letter_code_can ;DSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTY SYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 SER n 1 3 GLY n 1 4 ILE n 1 5 SER n 1 6 PRO n 1 7 ARG n 1 8 ALA n 1 9 VAL n 1 10 TRP n 1 11 GLN n 1 12 PHE n 1 13 ARG n 1 14 LYS n 1 15 MET n 1 16 ILE n 1 17 LYS n 1 18 CYS n 1 19 VAL n 1 20 ILE n 1 21 PRO n 1 22 GLY n 1 23 SER n 1 24 ASP n 1 25 PRO n 1 26 PHE n 1 27 LEU n 1 28 GLU n 1 29 TYR n 1 30 ASN n 1 31 ASN n 1 32 TYR n 1 33 GLY n 1 34 CYS n 1 35 TYR n 1 36 CYS n 1 37 GLY n 1 38 LEU n 1 39 GLY n 1 40 GLY n 1 41 SER n 1 42 GLY n 1 43 THR n 1 44 PRO n 1 45 VAL n 1 46 ASP n 1 47 GLU n 1 48 LEU n 1 49 ASP n 1 50 LYS n 1 51 CYS n 1 52 CYS n 1 53 GLN n 1 54 THR n 1 55 HIS n 1 56 ASP n 1 57 ASN n 1 58 CYS n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ALA n 1 63 LYS n 1 64 LYS n 1 65 LEU n 1 66 ASP n 1 67 SER n 1 68 CYS n 1 69 LYS n 1 70 PHE n 1 71 LEU n 1 72 LEU n 1 73 ASP n 1 74 ASN n 1 75 PRO n 1 76 TYR n 1 77 THR n 1 78 HIS n 1 79 THR n 1 80 TYR n 1 81 SER n 1 82 TYR n 1 83 SER n 1 84 CYS n 1 85 SER n 1 86 GLY n 1 87 SER n 1 88 ALA n 1 89 ILE n 1 90 THR n 1 91 CYS n 1 92 SER n 1 93 SER n 1 94 LYS n 1 95 ASN n 1 96 LYS n 1 97 GLU n 1 98 CYS n 1 99 GLU n 1 100 ALA n 1 101 PHE n 1 102 ILE n 1 103 CYS n 1 104 ASN n 1 105 CYS n 1 106 ASP n 1 107 ARG n 1 108 ASN n 1 109 ALA n 1 110 ALA n 1 111 ILE n 1 112 CYS n 1 113 PHE n 1 114 SER n 1 115 LYS n 1 116 ALA n 1 117 PRO n 1 118 TYR n 1 119 ASN n 1 120 LYS n 1 121 ALA n 1 122 HIS n 1 123 LYS n 1 124 ASN n 1 125 LEU n 1 126 ASP n 1 127 THR n 1 128 LYS n 1 129 LYS n 1 130 TYR n 1 131 CYS n 1 132 GLN n 1 133 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PLA2G1B _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain GS115 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPIC9K _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PA21B_HUMAN _struct_ref.pdbx_db_accession P04054 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTY SYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS ; _struct_ref.pdbx_align_begin 16 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3ELO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 133 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04054 _struct_ref_seq.db_align_beg 16 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -6 _struct_ref_seq.pdbx_auth_seq_align_end 126 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3ELO _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 34.64 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 8.4 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.1M Tris, 0.2M lithium sulfate, 33% PEG 4000, pH 8.4, vapor diffusion, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'OXFORD RUBY CCD' _diffrn_detector.pdbx_collection_date 2007-12-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type 'OXFORD DIFFRACTION ENHANCED ULTRA' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3ELO _reflns.d_resolution_high 1.550 _reflns.d_resolution_low 18.683 _reflns.number_all ? _reflns.number_obs 16060 _reflns.pdbx_Rmerge_I_obs 0.072 _reflns.pdbx_netI_over_sigmaI 7.879 _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_redundancy 5.200 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.55 1.63 ? 8749 ? 0.513 1.4 0.513 ? 3.80 ? 2323 100.00 1 1 1.63 1.73 ? 9079 ? 0.386 2.0 0.386 ? 4.10 ? 2219 100.00 2 1 1.73 1.85 ? 8792 ? 0.351 1.7 0.351 ? 4.20 ? 2079 100.00 3 1 1.85 2.00 ? 9382 ? 0.174 1.6 0.174 ? 4.90 ? 1931 100.00 4 1 2.00 2.19 ? 9321 ? 0.107 6.9 0.107 ? 5.20 ? 1778 100.00 5 1 2.19 2.45 ? 9311 ? 0.074 9.9 0.074 ? 5.70 ? 1626 100.00 6 1 2.45 2.83 ? 9277 ? 0.056 13.1 0.056 ? 6.50 ? 1433 100.00 7 1 2.83 3.47 ? 8434 ? 0.038 18.0 0.038 ? 7.00 ? 1199 100.00 8 1 3.47 4.90 ? 8015 ? 0.030 21.8 0.030 ? 8.50 ? 947 100.00 9 1 4.90 19.05 ? 3949 ? 0.027 24.8 0.027 ? 7.50 ? 525 98.30 10 1 # _refine.entry_id 3ELO _refine.ls_d_res_high 1.550 _refine.ls_d_res_low 18.680 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.990 _refine.ls_number_reflns_obs 16042 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS, U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_obs 0.147 _refine.ls_R_factor_R_work 0.145 _refine.ls_R_factor_R_free 0.183 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 810 _refine.B_iso_mean 8.896 _refine.aniso_B[1][1] 0.060 _refine.aniso_B[2][2] 0.060 _refine.aniso_B[3][3] -0.100 _refine.aniso_B[1][2] 0.030 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.pdbx_overall_ESU_R 0.079 _refine.pdbx_overall_ESU_R_Free 0.082 _refine.overall_SU_ML 0.053 _refine.overall_SU_B 3.326 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 36.78 _refine.B_iso_min 2.44 _refine.occupancy_max 1.00 _refine.occupancy_min 0.33 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1033 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 164 _refine_hist.number_atoms_total 1202 _refine_hist.d_res_high 1.550 _refine_hist.d_res_low 18.680 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1093 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 756 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1486 1.365 1.955 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1835 0.936 3.015 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 140 5.789 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 50 40.676 25.200 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 185 11.998 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 3 9.309 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 151 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1235 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 215 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 678 0.524 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 272 0.151 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1093 0.915 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 415 1.611 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 390 2.571 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.550 _refine_ls_shell.d_res_low 1.590 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1111 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.243 _refine_ls_shell.R_factor_R_free 0.243 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1174 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3ELO _struct.title 'Crystal Structure of Human Pancreatic Prophospholipase A2' _struct.pdbx_descriptor 'Phospholipase A2 (E.C.3.1.1.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ELO _struct_keywords.text 'Human Pancreatic Prophospholipase A2, Trimeric, Hydrolase, Lipid degradation, Metal-binding, Secreted' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? ALA A 8 ? SER A -2 ALA A 1 5 ? 4 HELX_P HELX_P2 2 VAL A 9 ? ILE A 16 ? VAL A 2 ILE A 9 1 ? 8 HELX_P HELX_P3 3 LYS A 17 ? VAL A 19 ? LYS A 10 VAL A 12 5 ? 3 HELX_P HELX_P4 4 ASP A 24 ? ASN A 30 ? ASP A 17 ASN A 23 5 ? 7 HELX_P HELX_P5 5 ASP A 46 ? LYS A 63 ? ASP A 39 LYS A 56 1 ? 18 HELX_P HELX_P6 6 LYS A 64 ? LYS A 69 ? LYS A 57 LYS A 62 5 ? 6 HELX_P HELX_P7 7 LYS A 96 ? ALA A 116 ? LYS A 89 ALA A 109 1 ? 21 HELX_P HELX_P8 8 ASN A 119 ? LYS A 123 ? ASN A 112 LYS A 116 5 ? 5 HELX_P HELX_P9 9 ASP A 126 ? CYS A 131 ? ASP A 119 CYS A 124 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 11 A CYS 77 1_555 ? ? ? ? ? ? ? 2.045 ? disulf2 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 131 SG ? ? A CYS 27 A CYS 124 1_555 ? ? ? ? ? ? ? 2.007 ? disulf3 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 29 A CYS 45 1_555 ? ? ? ? ? ? ? 2.023 ? disulf4 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 112 SG ? ? A CYS 44 A CYS 105 1_555 ? ? ? ? ? ? ? 2.007 ? disulf5 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 51 A CYS 98 1_555 ? ? ? ? ? ? ? 2.032 ? disulf6 disulf ? ? A CYS 68 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 61 A CYS 91 1_555 ? ? ? ? ? ? ? 2.004 ? disulf7 disulf ? ? A CYS 91 SG ? ? ? 1_555 A CYS 103 SG ? ? A CYS 84 A CYS 96 1_555 ? ? ? ? ? ? ? 2.030 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 82 ? SER A 85 ? TYR A 75 SER A 78 A 2 ALA A 88 ? CYS A 91 ? ALA A 81 CYS A 84 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 83 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 76 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id THR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 90 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id THR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 83 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 127' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 TRP A 10 ? TRP A 3 . ? 1_555 ? 2 AC1 4 ARG A 13 ? ARG A 6 . ? 1_555 ? 3 AC1 4 TYR A 76 ? TYR A 69 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 174 . ? 1_555 ? # _atom_sites.entry_id 3ELO _atom_sites.fract_transf_matrix[1][1] 0.017684 _atom_sites.fract_transf_matrix[1][2] 0.010210 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020419 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016493 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 -6 -6 ASP ASP A . n A 1 2 SER 2 -5 -5 SER SER A . n A 1 3 GLY 3 -4 -4 GLY GLY A . n A 1 4 ILE 4 -3 -3 ILE ILE A . n A 1 5 SER 5 -2 -2 SER SER A . n A 1 6 PRO 6 -1 -1 PRO PRO A . n A 1 7 ARG 7 0 0 ARG ARG A . n A 1 8 ALA 8 1 1 ALA ALA A . n A 1 9 VAL 9 2 2 VAL VAL A . n A 1 10 TRP 10 3 3 TRP TRP A . n A 1 11 GLN 11 4 4 GLN GLN A . n A 1 12 PHE 12 5 5 PHE PHE A . n A 1 13 ARG 13 6 6 ARG ARG A . n A 1 14 LYS 14 7 7 LYS LYS A . n A 1 15 MET 15 8 8 MET MET A . n A 1 16 ILE 16 9 9 ILE ILE A . n A 1 17 LYS 17 10 10 LYS LYS A . n A 1 18 CYS 18 11 11 CYS CYS A . n A 1 19 VAL 19 12 12 VAL VAL A . n A 1 20 ILE 20 13 13 ILE ILE A . n A 1 21 PRO 21 14 14 PRO PRO A . n A 1 22 GLY 22 15 15 GLY GLY A . n A 1 23 SER 23 16 16 SER SER A . n A 1 24 ASP 24 17 17 ASP ASP A . n A 1 25 PRO 25 18 18 PRO PRO A . n A 1 26 PHE 26 19 19 PHE PHE A . n A 1 27 LEU 27 20 20 LEU LEU A . n A 1 28 GLU 28 21 21 GLU GLU A . n A 1 29 TYR 29 22 22 TYR TYR A . n A 1 30 ASN 30 23 23 ASN ASN A . n A 1 31 ASN 31 24 24 ASN ASN A . n A 1 32 TYR 32 25 25 TYR TYR A . n A 1 33 GLY 33 26 26 GLY GLY A . n A 1 34 CYS 34 27 27 CYS CYS A . n A 1 35 TYR 35 28 28 TYR TYR A . n A 1 36 CYS 36 29 29 CYS CYS A . n A 1 37 GLY 37 30 30 GLY GLY A . n A 1 38 LEU 38 31 31 LEU LEU A . n A 1 39 GLY 39 32 32 GLY GLY A . n A 1 40 GLY 40 33 33 GLY GLY A . n A 1 41 SER 41 34 34 SER SER A . n A 1 42 GLY 42 35 35 GLY GLY A . n A 1 43 THR 43 36 36 THR THR A . n A 1 44 PRO 44 37 37 PRO PRO A . n A 1 45 VAL 45 38 38 VAL VAL A . n A 1 46 ASP 46 39 39 ASP ASP A . n A 1 47 GLU 47 40 40 GLU GLU A . n A 1 48 LEU 48 41 41 LEU LEU A . n A 1 49 ASP 49 42 42 ASP ASP A . n A 1 50 LYS 50 43 43 LYS LYS A . n A 1 51 CYS 51 44 44 CYS CYS A . n A 1 52 CYS 52 45 45 CYS CYS A . n A 1 53 GLN 53 46 46 GLN GLN A . n A 1 54 THR 54 47 47 THR THR A . n A 1 55 HIS 55 48 48 HIS HIS A . n A 1 56 ASP 56 49 49 ASP ASP A . n A 1 57 ASN 57 50 50 ASN ASN A . n A 1 58 CYS 58 51 51 CYS CYS A . n A 1 59 TYR 59 52 52 TYR TYR A . n A 1 60 ASP 60 53 53 ASP ASP A . n A 1 61 GLN 61 54 54 GLN GLN A . n A 1 62 ALA 62 55 55 ALA ALA A . n A 1 63 LYS 63 56 56 LYS LYS A . n A 1 64 LYS 64 57 57 LYS LYS A . n A 1 65 LEU 65 58 58 LEU LEU A . n A 1 66 ASP 66 59 59 ASP ASP A . n A 1 67 SER 67 60 60 SER SER A . n A 1 68 CYS 68 61 61 CYS CYS A . n A 1 69 LYS 69 62 62 LYS LYS A . n A 1 70 PHE 70 63 63 PHE PHE A . n A 1 71 LEU 71 64 64 LEU LEU A . n A 1 72 LEU 72 65 65 LEU LEU A . n A 1 73 ASP 73 66 66 ASP ASP A . n A 1 74 ASN 74 67 67 ASN ASN A . n A 1 75 PRO 75 68 68 PRO PRO A . n A 1 76 TYR 76 69 69 TYR TYR A . n A 1 77 THR 77 70 70 THR THR A . n A 1 78 HIS 78 71 71 HIS HIS A . n A 1 79 THR 79 72 72 THR THR A . n A 1 80 TYR 80 73 73 TYR TYR A . n A 1 81 SER 81 74 74 SER SER A . n A 1 82 TYR 82 75 75 TYR TYR A . n A 1 83 SER 83 76 76 SER SER A . n A 1 84 CYS 84 77 77 CYS CYS A . n A 1 85 SER 85 78 78 SER SER A . n A 1 86 GLY 86 79 79 GLY GLY A . n A 1 87 SER 87 80 80 SER SER A . n A 1 88 ALA 88 81 81 ALA ALA A . n A 1 89 ILE 89 82 82 ILE ILE A . n A 1 90 THR 90 83 83 THR THR A . n A 1 91 CYS 91 84 84 CYS CYS A . n A 1 92 SER 92 85 85 SER SER A . n A 1 93 SER 93 86 86 SER SER A . n A 1 94 LYS 94 87 87 LYS LYS A . n A 1 95 ASN 95 88 88 ASN ASN A . n A 1 96 LYS 96 89 89 LYS LYS A . n A 1 97 GLU 97 90 90 GLU GLU A . n A 1 98 CYS 98 91 91 CYS CYS A . n A 1 99 GLU 99 92 92 GLU GLU A . n A 1 100 ALA 100 93 93 ALA ALA A . n A 1 101 PHE 101 94 94 PHE PHE A . n A 1 102 ILE 102 95 95 ILE ILE A . n A 1 103 CYS 103 96 96 CYS CYS A . n A 1 104 ASN 104 97 97 ASN ASN A . n A 1 105 CYS 105 98 98 CYS CYS A . n A 1 106 ASP 106 99 99 ASP ASP A . n A 1 107 ARG 107 100 100 ARG ARG A . n A 1 108 ASN 108 101 101 ASN ASN A . n A 1 109 ALA 109 102 102 ALA ALA A . n A 1 110 ALA 110 103 103 ALA ALA A . n A 1 111 ILE 111 104 104 ILE ILE A . n A 1 112 CYS 112 105 105 CYS CYS A . n A 1 113 PHE 113 106 106 PHE PHE A . n A 1 114 SER 114 107 107 SER SER A . n A 1 115 LYS 115 108 108 LYS LYS A . n A 1 116 ALA 116 109 109 ALA ALA A . n A 1 117 PRO 117 110 110 PRO PRO A . n A 1 118 TYR 118 111 111 TYR TYR A . n A 1 119 ASN 119 112 112 ASN ASN A . n A 1 120 LYS 120 113 113 LYS LYS A . n A 1 121 ALA 121 114 114 ALA ALA A . n A 1 122 HIS 122 115 115 HIS HIS A . n A 1 123 LYS 123 116 116 LYS LYS A . n A 1 124 ASN 124 117 117 ASN ASN A . n A 1 125 LEU 125 118 118 LEU LEU A . n A 1 126 ASP 126 119 119 ASP ASP A . n A 1 127 THR 127 120 120 THR THR A . n A 1 128 LYS 128 121 121 LYS LYS A . n A 1 129 LYS 129 122 122 LYS LYS A . n A 1 130 TYR 130 123 123 TYR TYR A . n A 1 131 CYS 131 124 124 CYS CYS A . n A 1 132 GLN 132 125 125 GLN GLN A . n A 1 133 SER 133 126 126 SER SER A . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2,3 A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 5670 ? 2 MORE -71 ? 2 'SSA (A^2)' 16610 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 -28.2745000000 0.8660254038 -0.5000000000 0.0000000000 -48.9728705586 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5000000000 0.8660254038 0.0000000000 28.2745000000 -0.8660254038 -0.5000000000 0.0000000000 -48.9728705586 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 127 ? B SO4 . 2 1 A SO4 127 ? B SO4 . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-02-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -7.7451 -28.8047 -6.1866 0.0907 0.2091 0.0889 0.0101 0.0533 -0.0765 6.9297 7.1980 5.3118 0.0801 1.9794 -5.1975 -0.0948 -0.1368 0.2315 1.1781 -0.4957 -0.6038 -0.6798 0.6216 0.5193 'X-RAY DIFFRACTION' 2 ? refined -7.1289 -25.2248 5.8264 0.0413 0.0603 0.0479 -0.0040 -0.0007 -0.0032 0.6998 1.2357 2.3938 -0.5508 -1.2868 0.8899 -0.0070 0.0183 -0.0112 -0.0765 0.0154 -0.0912 0.0687 0.0203 0.1337 'X-RAY DIFFRACTION' 3 ? refined -13.3385 -31.1879 8.1476 0.0494 0.0406 0.0477 0.0172 0.0218 0.0145 1.6096 1.6519 5.0320 0.8233 0.0214 2.4793 -0.0352 -0.0500 0.0852 -0.1563 -0.1636 -0.0173 0.1973 0.4102 0.0563 'X-RAY DIFFRACTION' 4 ? refined -18.4974 -30.7260 -6.9702 0.0320 0.0475 0.0477 -0.0064 0.0064 -0.0033 0.6379 1.0738 3.9264 -0.2426 1.1853 -0.4842 -0.0078 0.0036 0.0042 0.0835 -0.0196 -0.0114 -0.0091 -0.0371 0.0470 'X-RAY DIFFRACTION' 5 ? refined -19.5381 -23.3700 -4.5840 0.0384 0.0692 0.0482 0.0132 -0.0066 0.0013 1.6069 1.5001 0.7535 0.8899 -0.1964 0.3324 -0.0224 0.0248 -0.0024 0.1193 0.0765 0.0607 -0.0653 -0.0381 -0.0706 'X-RAY DIFFRACTION' 6 ? refined -5.9748 -12.7195 -10.1360 0.0811 0.0650 0.0682 -0.0055 0.0120 0.0222 11.1237 3.0880 4.6658 -1.0881 -0.9397 0.1906 -0.0440 0.1343 -0.0904 0.6268 0.2746 0.0877 -0.3428 -0.2595 -0.1192 'X-RAY DIFFRACTION' 7 ? refined -0.9074 -21.8424 -5.9617 0.0207 0.0436 0.0604 0.0135 0.0234 0.0047 0.2376 4.1104 2.2133 0.6356 0.1853 -1.7357 -0.0270 -0.0099 0.0370 0.0112 -0.0244 -0.1327 -0.0995 -0.0079 0.0389 'X-RAY DIFFRACTION' 8 ? refined -8.4008 -14.4080 9.8012 0.0601 0.0362 0.0267 0.0053 -0.0112 -0.0037 2.9690 1.9497 5.0889 0.2947 -1.9550 -0.4043 0.0309 -0.0643 0.0334 -0.0036 0.0829 -0.0908 0.0107 -0.4321 0.0902 'X-RAY DIFFRACTION' 9 ? refined -11.7229 -15.8648 2.1135 0.0494 0.0521 0.0561 0.0179 -0.0004 -0.0046 2.5327 2.2199 1.2942 1.4304 -0.5277 -0.4444 0.0359 -0.0381 0.0022 -0.0012 0.1115 -0.0232 0.0131 -0.0753 0.0230 'X-RAY DIFFRACTION' 10 ? refined -22.8784 -34.6483 1.7245 0.0374 0.0489 0.0530 -0.0153 0.0140 0.0058 3.3220 2.3671 3.0406 -1.7970 -1.3007 2.3224 0.0172 -0.0086 -0.0086 -0.0690 -0.0510 -0.0241 0.0232 0.0814 -0.0794 'X-RAY DIFFRACTION' 11 ? refined -23.9169 -37.1271 -13.5962 0.0483 0.0548 0.0470 0.0020 -0.0042 -0.0100 1.9358 7.9472 8.7661 -1.6425 2.1650 -5.5485 0.1565 -0.0983 -0.0582 0.0400 -0.2640 0.1431 -0.1998 0.4825 0.0670 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 0 ? -6 . . . . 'X-RAY DIFFRACTION' ? 2 2 A A 10 ? 1 . . . . 'X-RAY DIFFRACTION' ? 3 3 A A 22 ? 11 . . . . 'X-RAY DIFFRACTION' ? 4 4 A A 36 ? 23 . . . . 'X-RAY DIFFRACTION' ? 5 5 A A 54 ? 37 . . . . 'X-RAY DIFFRACTION' ? 6 6 A A 60 ? 55 . . . . 'X-RAY DIFFRACTION' ? 7 7 A A 71 ? 61 . . . . 'X-RAY DIFFRACTION' ? 8 8 A A 87 ? 72 . . . . 'X-RAY DIFFRACTION' ? 9 9 A A 107 ? 88 . . . . 'X-RAY DIFFRACTION' ? 10 10 A A 118 ? 108 . . . . 'X-RAY DIFFRACTION' ? 11 11 A A 126 ? 119 . . . . 'X-RAY DIFFRACTION' ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 1 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 2 REFMAC 5.5.0044 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CrysalisPro . ? ? ? ? 'data reduction' ? ? ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 158 ? ? O A HOH 279 ? ? 1.89 2 1 O A HOH 165 ? ? O A HOH 212 ? ? 1.94 3 1 OG A SER 60 ? ? O A HOH 170 ? ? 2.07 4 1 O A HOH 165 ? ? O A HOH 241 ? ? 2.18 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PHE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 63 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 81.67 _pdbx_validate_torsion.psi -7.30 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 127 1 SO4 SO4 A . C 3 HOH 1 128 1 HOH HOH A . C 3 HOH 2 129 2 HOH HOH A . C 3 HOH 3 130 3 HOH HOH A . C 3 HOH 4 131 4 HOH HOH A . C 3 HOH 5 132 5 HOH HOH A . C 3 HOH 6 133 6 HOH HOH A . C 3 HOH 7 134 7 HOH HOH A . C 3 HOH 8 135 8 HOH HOH A . C 3 HOH 9 136 9 HOH HOH A . C 3 HOH 10 137 11 HOH HOH A . C 3 HOH 11 138 12 HOH HOH A . C 3 HOH 12 139 13 HOH HOH A . C 3 HOH 13 140 14 HOH HOH A . C 3 HOH 14 141 15 HOH HOH A . C 3 HOH 15 142 16 HOH HOH A . C 3 HOH 16 143 18 HOH HOH A . C 3 HOH 17 144 19 HOH HOH A . C 3 HOH 18 145 20 HOH HOH A . C 3 HOH 19 146 21 HOH HOH A . C 3 HOH 20 147 22 HOH HOH A . C 3 HOH 21 148 23 HOH HOH A . C 3 HOH 22 149 24 HOH HOH A . C 3 HOH 23 150 25 HOH HOH A . C 3 HOH 24 151 26 HOH HOH A . C 3 HOH 25 152 27 HOH HOH A . C 3 HOH 26 153 28 HOH HOH A . C 3 HOH 27 154 31 HOH HOH A . C 3 HOH 28 155 32 HOH HOH A . C 3 HOH 29 156 33 HOH HOH A . C 3 HOH 30 157 34 HOH HOH A . C 3 HOH 31 158 36 HOH HOH A . C 3 HOH 32 159 39 HOH HOH A . C 3 HOH 33 160 41 HOH HOH A . C 3 HOH 34 161 45 HOH HOH A . C 3 HOH 35 162 47 HOH HOH A . C 3 HOH 36 163 48 HOH HOH A . C 3 HOH 37 164 49 HOH HOH A . C 3 HOH 38 165 50 HOH HOH A . C 3 HOH 39 166 51 HOH HOH A . C 3 HOH 40 167 52 HOH HOH A . C 3 HOH 41 168 53 HOH HOH A . C 3 HOH 42 169 54 HOH HOH A . C 3 HOH 43 170 55 HOH HOH A . C 3 HOH 44 171 56 HOH HOH A . C 3 HOH 45 172 57 HOH HOH A . C 3 HOH 46 173 58 HOH HOH A . C 3 HOH 47 174 59 HOH HOH A . C 3 HOH 48 175 60 HOH HOH A . C 3 HOH 49 176 61 HOH HOH A . C 3 HOH 50 177 62 HOH HOH A . C 3 HOH 51 178 63 HOH HOH A . C 3 HOH 52 179 64 HOH HOH A . C 3 HOH 53 180 65 HOH HOH A . C 3 HOH 54 181 66 HOH HOH A . C 3 HOH 55 182 67 HOH HOH A . C 3 HOH 56 183 68 HOH HOH A . C 3 HOH 57 184 69 HOH HOH A . C 3 HOH 58 185 71 HOH HOH A . C 3 HOH 59 186 72 HOH HOH A . C 3 HOH 60 187 73 HOH HOH A . C 3 HOH 61 188 74 HOH HOH A . C 3 HOH 62 189 75 HOH HOH A . C 3 HOH 63 190 76 HOH HOH A . C 3 HOH 64 191 77 HOH HOH A . C 3 HOH 65 192 78 HOH HOH A . C 3 HOH 66 193 79 HOH HOH A . C 3 HOH 67 194 80 HOH HOH A . C 3 HOH 68 195 81 HOH HOH A . C 3 HOH 69 196 82 HOH HOH A . C 3 HOH 70 197 83 HOH HOH A . C 3 HOH 71 198 84 HOH HOH A . C 3 HOH 72 199 85 HOH HOH A . C 3 HOH 73 200 86 HOH HOH A . C 3 HOH 74 201 87 HOH HOH A . C 3 HOH 75 202 88 HOH HOH A . C 3 HOH 76 203 89 HOH HOH A . C 3 HOH 77 204 90 HOH HOH A . C 3 HOH 78 205 91 HOH HOH A . C 3 HOH 79 206 92 HOH HOH A . C 3 HOH 80 207 93 HOH HOH A . C 3 HOH 81 208 94 HOH HOH A . C 3 HOH 82 209 95 HOH HOH A . C 3 HOH 83 210 96 HOH HOH A . C 3 HOH 84 211 97 HOH HOH A . C 3 HOH 85 212 98 HOH HOH A . C 3 HOH 86 213 99 HOH HOH A . C 3 HOH 87 214 100 HOH HOH A . C 3 HOH 88 215 101 HOH HOH A . C 3 HOH 89 216 102 HOH HOH A . C 3 HOH 90 217 103 HOH HOH A . C 3 HOH 91 218 104 HOH HOH A . C 3 HOH 92 219 105 HOH HOH A . C 3 HOH 93 220 106 HOH HOH A . C 3 HOH 94 221 107 HOH HOH A . C 3 HOH 95 222 108 HOH HOH A . C 3 HOH 96 223 109 HOH HOH A . C 3 HOH 97 224 110 HOH HOH A . C 3 HOH 98 225 111 HOH HOH A . C 3 HOH 99 226 112 HOH HOH A . C 3 HOH 100 227 113 HOH HOH A . C 3 HOH 101 228 114 HOH HOH A . C 3 HOH 102 229 115 HOH HOH A . C 3 HOH 103 230 116 HOH HOH A . C 3 HOH 104 231 117 HOH HOH A . C 3 HOH 105 232 118 HOH HOH A . C 3 HOH 106 233 119 HOH HOH A . C 3 HOH 107 234 120 HOH HOH A . C 3 HOH 108 235 121 HOH HOH A . C 3 HOH 109 236 122 HOH HOH A . C 3 HOH 110 237 123 HOH HOH A . C 3 HOH 111 238 124 HOH HOH A . C 3 HOH 112 239 125 HOH HOH A . C 3 HOH 113 240 126 HOH HOH A . C 3 HOH 114 241 128 HOH HOH A . C 3 HOH 115 242 129 HOH HOH A . C 3 HOH 116 243 130 HOH HOH A . C 3 HOH 117 244 131 HOH HOH A . C 3 HOH 118 245 132 HOH HOH A . C 3 HOH 119 246 133 HOH HOH A . C 3 HOH 120 247 134 HOH HOH A . C 3 HOH 121 248 135 HOH HOH A . C 3 HOH 122 249 136 HOH HOH A . C 3 HOH 123 250 137 HOH HOH A . C 3 HOH 124 251 138 HOH HOH A . C 3 HOH 125 252 139 HOH HOH A . C 3 HOH 126 253 140 HOH HOH A . C 3 HOH 127 254 141 HOH HOH A . C 3 HOH 128 255 142 HOH HOH A . C 3 HOH 129 256 143 HOH HOH A . C 3 HOH 130 257 144 HOH HOH A . C 3 HOH 131 258 145 HOH HOH A . C 3 HOH 132 259 146 HOH HOH A . C 3 HOH 133 260 147 HOH HOH A . C 3 HOH 134 261 148 HOH HOH A . C 3 HOH 135 262 149 HOH HOH A . C 3 HOH 136 263 150 HOH HOH A . C 3 HOH 137 264 151 HOH HOH A . C 3 HOH 138 265 152 HOH HOH A . C 3 HOH 139 266 153 HOH HOH A . C 3 HOH 140 267 154 HOH HOH A . C 3 HOH 141 268 155 HOH HOH A . C 3 HOH 142 269 156 HOH HOH A . C 3 HOH 143 270 157 HOH HOH A . C 3 HOH 144 271 158 HOH HOH A . C 3 HOH 145 272 160 HOH HOH A . C 3 HOH 146 273 161 HOH HOH A . C 3 HOH 147 274 162 HOH HOH A . C 3 HOH 148 275 163 HOH HOH A . C 3 HOH 149 276 165 HOH HOH A . C 3 HOH 150 277 166 HOH HOH A . C 3 HOH 151 278 167 HOH HOH A . C 3 HOH 152 279 168 HOH HOH A . C 3 HOH 153 280 169 HOH HOH A . C 3 HOH 154 281 170 HOH HOH A . C 3 HOH 155 282 171 HOH HOH A . C 3 HOH 156 283 172 HOH HOH A . C 3 HOH 157 284 173 HOH HOH A . C 3 HOH 158 285 174 HOH HOH A . C 3 HOH 159 286 175 HOH HOH A . C 3 HOH 160 287 176 HOH HOH A . C 3 HOH 161 288 177 HOH HOH A . C 3 HOH 162 289 178 HOH HOH A . C 3 HOH 163 290 179 HOH HOH A . C 3 HOH 164 291 180 HOH HOH A . #