data_3EMM # _entry.id 3EMM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EMM pdb_00003emm 10.2210/pdb3emm/pdb RCSB RCSB049512 ? ? WWPDB D_1000049512 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2A13 'selenomethionine substituted At1g79260 without HEME' unspecified TargetDB GO.6462 . unspecified # _pdbx_database_status.entry_id 3EMM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-09-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bianchetti, C.M.' 1 'Bingman, C.A.' 2 'Wesenberg, G.E.' 3 'Phillips Jr., G.N.' 4 'Center for Eukaryotic Structural Genomics (CESG)' 5 # _citation.id primary _citation.title ;The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1. ; _citation.journal_abbrev Proteins _citation.journal_volume 78 _citation.page_first 917 _citation.page_last 931 _citation.year 2010 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19938152 _citation.pdbx_database_id_DOI 10.1002/prot.22617 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bianchetti, C.M.' 1 ? primary 'Blouin, G.C.' 2 ? primary 'Bitto, E.' 3 ? primary 'Olson, J.S.' 4 ? primary 'Phillips, G.N.' 5 ? # _cell.entry_id 3EMM _cell.length_a 59.749 _cell.length_b 79.732 _cell.length_c 36.971 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EMM _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein At1g79260' 18507.957 1 ? ? ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 water nat water 18.015 253 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNQLQQLQNPGESPPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPMHAESG YFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLK AILDKL ; _entity_poly.pdbx_seq_one_letter_code_can ;MNQLQQLQNPGESPPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPMHAESG YFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLK AILDKL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GO.6462 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 GLN n 1 4 LEU n 1 5 GLN n 1 6 GLN n 1 7 LEU n 1 8 GLN n 1 9 ASN n 1 10 PRO n 1 11 GLY n 1 12 GLU n 1 13 SER n 1 14 PRO n 1 15 PRO n 1 16 VAL n 1 17 HIS n 1 18 PRO n 1 19 PHE n 1 20 VAL n 1 21 ALA n 1 22 PRO n 1 23 LEU n 1 24 SER n 1 25 TYR n 1 26 LEU n 1 27 LEU n 1 28 GLY n 1 29 THR n 1 30 TRP n 1 31 ARG n 1 32 GLY n 1 33 GLN n 1 34 GLY n 1 35 GLU n 1 36 GLY n 1 37 GLU n 1 38 TYR n 1 39 PRO n 1 40 THR n 1 41 ILE n 1 42 PRO n 1 43 SER n 1 44 PHE n 1 45 ARG n 1 46 TYR n 1 47 GLY n 1 48 GLU n 1 49 GLU n 1 50 ILE n 1 51 ARG n 1 52 PHE n 1 53 SER n 1 54 HIS n 1 55 SER n 1 56 GLY n 1 57 LYS n 1 58 PRO n 1 59 VAL n 1 60 ILE n 1 61 ALA n 1 62 TYR n 1 63 THR n 1 64 GLN n 1 65 LYS n 1 66 THR n 1 67 TRP n 1 68 LYS n 1 69 LEU n 1 70 GLU n 1 71 SER n 1 72 GLY n 1 73 ALA n 1 74 PRO n 1 75 MET n 1 76 HIS n 1 77 ALA n 1 78 GLU n 1 79 SER n 1 80 GLY n 1 81 TYR n 1 82 PHE n 1 83 ARG n 1 84 PRO n 1 85 ARG n 1 86 PRO n 1 87 ASP n 1 88 GLY n 1 89 SER n 1 90 ILE n 1 91 GLU n 1 92 VAL n 1 93 VAL n 1 94 ILE n 1 95 ALA n 1 96 GLN n 1 97 SER n 1 98 THR n 1 99 GLY n 1 100 LEU n 1 101 VAL n 1 102 GLU n 1 103 VAL n 1 104 GLN n 1 105 LYS n 1 106 GLY n 1 107 THR n 1 108 TYR n 1 109 ASN n 1 110 VAL n 1 111 ASP n 1 112 GLU n 1 113 GLN n 1 114 SER n 1 115 ILE n 1 116 LYS n 1 117 LEU n 1 118 LYS n 1 119 SER n 1 120 ASP n 1 121 LEU n 1 122 VAL n 1 123 GLY n 1 124 ASN n 1 125 ALA n 1 126 SER n 1 127 LYS n 1 128 VAL n 1 129 LYS n 1 130 GLU n 1 131 ILE n 1 132 SER n 1 133 ARG n 1 134 GLU n 1 135 PHE n 1 136 GLU n 1 137 LEU n 1 138 VAL n 1 139 ASP n 1 140 GLY n 1 141 LYS n 1 142 LEU n 1 143 SER n 1 144 TYR n 1 145 VAL n 1 146 VAL n 1 147 ARG n 1 148 MET n 1 149 SER n 1 150 THR n 1 151 THR n 1 152 THR n 1 153 ASN n 1 154 PRO n 1 155 LEU n 1 156 GLN n 1 157 PRO n 1 158 HIS n 1 159 LEU n 1 160 LYS n 1 161 ALA n 1 162 ILE n 1 163 LEU n 1 164 ASP n 1 165 LYS n 1 166 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'At1g79260, YUP8H12R.14' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834 P(RARE2)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PVP 16' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y1926_ARATH _struct_ref.pdbx_db_accession O64527 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNQLQQLQNPGESPPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPMHAESG YFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLK AILDKL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EMM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O64527 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 166 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 166 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3EMM _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 48.0 _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;Protein Solution (16.5 mg/mL native protein [Heme was added in purification step], 0.050 M sodium chloride, 0.0003 M TCEP, 0.005 M MES pH 6.0) mixed in a 1:1 ratio with the Well Solution (24% PEG 4K, 0.05 M BTP pH 7.0 ) Cryoprotected with 30% PEG 4K, 0.05 M BTP pH 7.0 and 15% ethylene glycol, vapor diffusion, hanging drop, temperature 277K, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-07-19 _diffrn_detector.details 'Beryllium lenses' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Diamond [111]' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.pdbx_wavelength_list 0.97856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-G # _reflns.entry_id 3EMM _reflns.d_resolution_high 1.358 _reflns.d_resolution_low 50.000 _reflns.number_obs 37822 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_netI_over_sigmaI 22.969 _reflns.pdbx_chi_squared 0.967 _reflns.pdbx_redundancy 4.700 _reflns.percent_possible_obs 97.200 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.36 1.41 ? ? ? 0.236 5.074 ? 0.957 3.70 ? 3728 97.60 ? 1 1.41 1.47 ? ? ? 0.190 ? ? 0.983 4.50 ? 3830 99.80 ? 2 1.47 1.53 ? ? ? 0.141 ? ? 0.985 4.70 ? 3824 99.80 ? 3 1.53 1.61 ? ? ? 0.099 ? ? 1.001 4.70 ? 3837 99.50 ? 4 1.61 1.71 ? ? ? 0.079 ? ? 1.062 4.80 ? 3792 99.30 ? 5 1.71 1.85 ? ? ? 0.067 ? ? 1.071 4.90 ? 3844 99.00 ? 6 1.85 2.03 ? ? ? 0.047 ? ? 1.033 4.90 ? 3795 98.40 ? 7 2.03 2.33 ? ? ? 0.047 ? ? 0.933 5.00 ? 3834 97.60 ? 8 2.33 2.93 ? ? ? 0.043 ? ? 0.921 5.00 ? 3796 96.20 ? 9 2.93 50.00 ? ? ? 0.031 ? ? 0.702 4.70 ? 3542 85.50 ? 10 # _refine.entry_id 3EMM _refine.ls_d_res_high 1.358 _refine.ls_d_res_low 47.836 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.155 _refine.ls_number_reflns_obs 37799 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.171 _refine.ls_R_factor_R_work 0.170 _refine.ls_wR_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.198 _refine.ls_wR_factor_R_free 0.216 _refine.ls_percent_reflns_R_free 4.931 _refine.ls_number_reflns_R_free 1864 _refine.B_iso_mean 15.287 _refine.aniso_B[1][1] 0.657 _refine.aniso_B[2][2] -0.694 _refine.aniso_B[3][3] 0.037 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.pdbx_overall_ESU_R 0.054 _refine.pdbx_overall_ESU_R_Free 0.057 _refine.overall_SU_ML 0.031 _refine.overall_SU_B 1.526 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 2A13' _refine.B_iso_max 67.43 _refine.B_iso_min 5.30 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1236 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 253 _refine_hist.number_atoms_total 1536 _refine_hist.d_res_high 1.358 _refine_hist.d_res_low 47.836 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1329 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1826 1.354 2.081 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 168 6.236 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 52 36.402 23.846 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 226 11.129 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 22.207 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 192 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1010 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 555 0.205 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 911 0.297 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 168 0.118 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 32 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 19 0.119 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 813 0.769 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1288 1.246 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 597 1.759 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 528 2.512 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.393 1.358 2834 95.872 2582 0.237 135 0.289 . . . . . 'X-RAY DIFFRACTION' 20 1.431 1.393 2743 99.490 2602 0.206 127 0.225 . . . . . 'X-RAY DIFFRACTION' 20 1.473 1.431 2698 99.889 2564 0.192 131 0.237 . . . . . 'X-RAY DIFFRACTION' 20 1.518 1.473 2602 99.769 2483 0.173 113 0.201 . . . . . 'X-RAY DIFFRACTION' 20 1.568 1.518 2530 99.565 2387 0.159 132 0.206 . . . . . 'X-RAY DIFFRACTION' 20 1.623 1.568 2457 99.593 2325 0.167 122 0.170 . . . . . 'X-RAY DIFFRACTION' 20 1.684 1.623 2387 99.372 2262 0.166 110 0.181 . . . . . 'X-RAY DIFFRACTION' 20 1.753 1.684 2281 99.167 2154 0.165 108 0.199 . . . . . 'X-RAY DIFFRACTION' 20 1.831 1.753 2199 98.909 2051 0.160 124 0.187 . . . . . 'X-RAY DIFFRACTION' 20 1.920 1.831 2087 98.658 1960 0.160 99 0.172 . . . . . 'X-RAY DIFFRACTION' 20 2.024 1.920 2010 98.308 1874 0.158 102 0.207 . . . . . 'X-RAY DIFFRACTION' 20 2.146 2.024 1913 97.857 1778 0.162 94 0.181 . . . . . 'X-RAY DIFFRACTION' 20 2.294 2.146 1791 97.655 1649 0.164 100 0.163 . . . . . 'X-RAY DIFFRACTION' 20 2.477 2.294 1693 96.929 1556 0.170 85 0.212 . . . . . 'X-RAY DIFFRACTION' 20 2.713 2.477 1547 96.445 1425 0.174 67 0.235 . . . . . 'X-RAY DIFFRACTION' 20 3.032 2.713 1420 95.282 1284 0.173 69 0.179 . . . . . 'X-RAY DIFFRACTION' 20 3.499 3.032 1248 94.231 1117 0.158 59 0.170 . . . . . 'X-RAY DIFFRACTION' 20 4.279 3.499 1079 88.601 914 0.155 42 0.216 . . . . . 'X-RAY DIFFRACTION' 20 6.028 4.279 864 78.125 640 0.164 35 0.204 . . . . . 'X-RAY DIFFRACTION' 20 47.836 6.028 523 64.627 328 0.290 10 0.423 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3EMM _struct.title 'X-ray structure of protein from Arabidopsis thaliana AT1G79260 with Bound Heme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EMM _struct_keywords.text ;HEME, Unknown Function, Structural Genomics Functional Follow-up Study, Structural Genomics, Protein Structure Initiative, PSI, Center for Eukaryotic Structural Genomics, CESG ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 20 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 27 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 20 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 27 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 158 NE2 ? ? ? 1_555 B HEM . FE ? ? A HIS 158 A HEM 200 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc2 metalc ? ? B HEM . FE ? ? ? 1_555 D HOH . O ? ? A HEM 200 A HOH 3432 1_555 ? ? ? ? ? ? ? 2.505 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 11 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 28 ? TYR A 38 ? GLY A 28 TYR A 38 A 2 ILE A 41 ? SER A 53 ? ILE A 41 SER A 53 A 3 ILE A 60 ? TRP A 67 ? ILE A 60 TRP A 67 A 4 PRO A 74 ? PRO A 84 ? PRO A 74 PRO A 84 A 5 SER A 89 ? GLN A 96 ? SER A 89 GLN A 96 A 6 VAL A 101 ? ASN A 109 ? VAL A 101 ASN A 109 A 7 SER A 114 ? GLY A 123 ? SER A 114 GLY A 123 A 8 VAL A 128 ? VAL A 138 ? VAL A 128 VAL A 138 A 9 LYS A 141 ? THR A 150 ? LYS A 141 THR A 150 A 10 GLN A 156 ? LYS A 165 ? GLN A 156 LYS A 165 A 11 GLY A 28 ? TYR A 38 ? GLY A 28 TYR A 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 36 ? N GLY A 36 O PHE A 44 ? O PHE A 44 A 2 3 N GLY A 47 ? N GLY A 47 O TRP A 67 ? O TRP A 67 A 3 4 N ILE A 60 ? N ILE A 60 O PHE A 82 ? O PHE A 82 A 4 5 N ARG A 83 ? N ARG A 83 O GLU A 91 ? O GLU A 91 A 5 6 N VAL A 92 ? N VAL A 92 O GLN A 104 ? O GLN A 104 A 6 7 N THR A 107 ? N THR A 107 O LYS A 116 ? O LYS A 116 A 7 8 N ILE A 115 ? N ILE A 115 O PHE A 135 ? O PHE A 135 A 8 9 N VAL A 138 ? N VAL A 138 O LYS A 141 ? O LYS A 141 A 9 10 N VAL A 146 ? N VAL A 146 O HIS A 158 ? O HIS A 158 A 10 11 O LYS A 160 ? O LYS A 160 N GLU A 35 ? N GLU A 35 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEM 200 ? 16 'BINDING SITE FOR RESIDUE HEM A 200' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A3318' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 THR A 40 ? THR A 40 . ? 1_555 ? 2 AC1 16 PHE A 44 ? PHE A 44 . ? 1_555 ? 3 AC1 16 TYR A 46 ? TYR A 46 . ? 1_555 ? 4 AC1 16 THR A 66 ? THR A 66 . ? 1_555 ? 5 AC1 16 HIS A 76 ? HIS A 76 . ? 1_555 ? 6 AC1 16 GLN A 96 ? GLN A 96 . ? 1_555 ? 7 AC1 16 LYS A 127 ? LYS A 127 . ? 1_555 ? 8 AC1 16 VAL A 128 ? VAL A 128 . ? 1_555 ? 9 AC1 16 ARG A 133 ? ARG A 133 . ? 1_555 ? 10 AC1 16 VAL A 146 ? VAL A 146 . ? 1_555 ? 11 AC1 16 MET A 148 ? MET A 148 . ? 1_555 ? 12 AC1 16 HIS A 158 ? HIS A 158 . ? 1_555 ? 13 AC1 16 LEU A 159 ? LEU A 159 . ? 1_555 ? 14 AC1 16 HOH D . ? HOH A 3428 . ? 1_555 ? 15 AC1 16 HOH D . ? HOH A 3432 . ? 1_555 ? 16 AC1 16 HOH D . ? HOH A 3482 . ? 1_555 ? 17 AC2 6 HIS A 54 ? HIS A 54 . ? 1_555 ? 18 AC2 6 SER A 55 ? SER A 55 . ? 1_555 ? 19 AC2 6 HOH D . ? HOH A 3324 . ? 1_555 ? 20 AC2 6 HOH D . ? HOH A 3386 . ? 1_555 ? 21 AC2 6 HOH D . ? HOH A 3407 . ? 1_555 ? 22 AC2 6 HOH D . ? HOH A 3571 . ? 1_555 ? # _atom_sites.entry_id 3EMM _atom_sites.fract_transf_matrix[1][1] 0.016737 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012542 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027048 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 LEU 4 4 ? ? ? A . n A 1 5 GLN 5 5 ? ? ? A . n A 1 6 GLN 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 GLN 8 8 ? ? ? A . n A 1 9 ASN 9 9 ? ? ? A . n A 1 10 PRO 10 10 ? ? ? A . n A 1 11 GLY 11 11 ? ? ? A . n A 1 12 GLU 12 12 ? ? ? A . n A 1 13 SER 13 13 ? ? ? A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLN 33 33 33 GLN GLN A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 HIS 76 76 76 HIS HIS A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 GLN 104 104 104 GLN GLN A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 TYR 144 144 144 TYR TYR A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 MET 148 148 148 MET MET A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 THR 151 151 151 THR THR A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 ASN 153 153 153 ASN ASN A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 GLN 156 156 156 GLN GLN A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 HIS 158 158 158 HIS HIS A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 LEU 166 166 166 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Center for Eukaryotic Structural Genomics' _pdbx_SG_project.initial_of_center CESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 200 200 HEM HEM A . C 3 EDO 1 3318 3318 EDO EDO A . D 4 HOH 1 3319 1 HOH HOH A . D 4 HOH 2 3320 2 HOH HOH A . D 4 HOH 3 3321 3 HOH HOH A . D 4 HOH 4 3322 4 HOH HOH A . D 4 HOH 5 3323 5 HOH HOH A . D 4 HOH 6 3324 6 HOH HOH A . D 4 HOH 7 3325 7 HOH HOH A . D 4 HOH 8 3326 8 HOH HOH A . D 4 HOH 9 3327 9 HOH HOH A . D 4 HOH 10 3328 10 HOH HOH A . D 4 HOH 11 3329 11 HOH HOH A . D 4 HOH 12 3330 12 HOH HOH A . D 4 HOH 13 3331 13 HOH HOH A . D 4 HOH 14 3332 14 HOH HOH A . D 4 HOH 15 3333 15 HOH HOH A . D 4 HOH 16 3334 16 HOH HOH A . D 4 HOH 17 3335 17 HOH HOH A . D 4 HOH 18 3336 18 HOH HOH A . D 4 HOH 19 3337 19 HOH HOH A . D 4 HOH 20 3338 20 HOH HOH A . D 4 HOH 21 3339 21 HOH HOH A . D 4 HOH 22 3340 22 HOH HOH A . D 4 HOH 23 3341 23 HOH HOH A . D 4 HOH 24 3342 24 HOH HOH A . D 4 HOH 25 3343 25 HOH HOH A . D 4 HOH 26 3344 26 HOH HOH A . D 4 HOH 27 3345 27 HOH HOH A . D 4 HOH 28 3346 28 HOH HOH A . D 4 HOH 29 3347 29 HOH HOH A . D 4 HOH 30 3348 30 HOH HOH A . D 4 HOH 31 3349 31 HOH HOH A . D 4 HOH 32 3350 32 HOH HOH A . D 4 HOH 33 3351 33 HOH HOH A . D 4 HOH 34 3352 34 HOH HOH A . D 4 HOH 35 3353 36 HOH HOH A . D 4 HOH 36 3354 37 HOH HOH A . D 4 HOH 37 3355 38 HOH HOH A . D 4 HOH 38 3356 39 HOH HOH A . D 4 HOH 39 3357 40 HOH HOH A . D 4 HOH 40 3358 41 HOH HOH A . D 4 HOH 41 3359 42 HOH HOH A . D 4 HOH 42 3360 43 HOH HOH A . D 4 HOH 43 3361 44 HOH HOH A . D 4 HOH 44 3362 45 HOH HOH A . D 4 HOH 45 3363 46 HOH HOH A . D 4 HOH 46 3364 47 HOH HOH A . D 4 HOH 47 3365 48 HOH HOH A . D 4 HOH 48 3366 49 HOH HOH A . D 4 HOH 49 3367 50 HOH HOH A . D 4 HOH 50 3368 51 HOH HOH A . D 4 HOH 51 3369 52 HOH HOH A . D 4 HOH 52 3370 53 HOH HOH A . D 4 HOH 53 3371 54 HOH HOH A . D 4 HOH 54 3372 55 HOH HOH A . D 4 HOH 55 3373 56 HOH HOH A . D 4 HOH 56 3374 57 HOH HOH A . D 4 HOH 57 3375 58 HOH HOH A . D 4 HOH 58 3376 59 HOH HOH A . D 4 HOH 59 3377 60 HOH HOH A . D 4 HOH 60 3378 61 HOH HOH A . D 4 HOH 61 3379 62 HOH HOH A . D 4 HOH 62 3380 63 HOH HOH A . D 4 HOH 63 3381 64 HOH HOH A . D 4 HOH 64 3382 65 HOH HOH A . D 4 HOH 65 3383 66 HOH HOH A . D 4 HOH 66 3384 67 HOH HOH A . D 4 HOH 67 3385 68 HOH HOH A . D 4 HOH 68 3386 69 HOH HOH A . D 4 HOH 69 3387 70 HOH HOH A . D 4 HOH 70 3388 71 HOH HOH A . D 4 HOH 71 3389 72 HOH HOH A . D 4 HOH 72 3390 73 HOH HOH A . D 4 HOH 73 3391 74 HOH HOH A . D 4 HOH 74 3392 75 HOH HOH A . D 4 HOH 75 3393 76 HOH HOH A . D 4 HOH 76 3394 77 HOH HOH A . D 4 HOH 77 3395 78 HOH HOH A . D 4 HOH 78 3396 79 HOH HOH A . D 4 HOH 79 3397 80 HOH HOH A . D 4 HOH 80 3398 81 HOH HOH A . D 4 HOH 81 3399 82 HOH HOH A . D 4 HOH 82 3400 83 HOH HOH A . D 4 HOH 83 3401 84 HOH HOH A . D 4 HOH 84 3402 85 HOH HOH A . D 4 HOH 85 3403 86 HOH HOH A . D 4 HOH 86 3404 87 HOH HOH A . D 4 HOH 87 3405 88 HOH HOH A . D 4 HOH 88 3406 89 HOH HOH A . D 4 HOH 89 3407 90 HOH HOH A . D 4 HOH 90 3408 91 HOH HOH A . D 4 HOH 91 3409 92 HOH HOH A . D 4 HOH 92 3410 93 HOH HOH A . D 4 HOH 93 3411 94 HOH HOH A . D 4 HOH 94 3412 95 HOH HOH A . D 4 HOH 95 3413 96 HOH HOH A . D 4 HOH 96 3414 98 HOH HOH A . D 4 HOH 97 3415 99 HOH HOH A . D 4 HOH 98 3416 100 HOH HOH A . D 4 HOH 99 3417 101 HOH HOH A . D 4 HOH 100 3418 102 HOH HOH A . D 4 HOH 101 3419 105 HOH HOH A . D 4 HOH 102 3420 106 HOH HOH A . D 4 HOH 103 3421 107 HOH HOH A . D 4 HOH 104 3422 108 HOH HOH A . D 4 HOH 105 3423 109 HOH HOH A . D 4 HOH 106 3424 110 HOH HOH A . D 4 HOH 107 3425 113 HOH HOH A . D 4 HOH 108 3426 114 HOH HOH A . D 4 HOH 109 3427 115 HOH HOH A . D 4 HOH 110 3428 116 HOH HOH A . D 4 HOH 111 3429 117 HOH HOH A . D 4 HOH 112 3430 118 HOH HOH A . D 4 HOH 113 3431 119 HOH HOH A . D 4 HOH 114 3432 120 HOH HOH A . D 4 HOH 115 3433 121 HOH HOH A . D 4 HOH 116 3434 122 HOH HOH A . D 4 HOH 117 3435 123 HOH HOH A . D 4 HOH 118 3436 124 HOH HOH A . D 4 HOH 119 3437 125 HOH HOH A . D 4 HOH 120 3438 126 HOH HOH A . D 4 HOH 121 3439 127 HOH HOH A . D 4 HOH 122 3440 128 HOH HOH A . D 4 HOH 123 3441 129 HOH HOH A . D 4 HOH 124 3442 130 HOH HOH A . D 4 HOH 125 3443 133 HOH HOH A . D 4 HOH 126 3444 135 HOH HOH A . D 4 HOH 127 3445 136 HOH HOH A . D 4 HOH 128 3446 137 HOH HOH A . D 4 HOH 129 3447 138 HOH HOH A . D 4 HOH 130 3448 139 HOH HOH A . D 4 HOH 131 3449 140 HOH HOH A . D 4 HOH 132 3450 141 HOH HOH A . D 4 HOH 133 3451 142 HOH HOH A . D 4 HOH 134 3452 143 HOH HOH A . D 4 HOH 135 3453 144 HOH HOH A . D 4 HOH 136 3454 145 HOH HOH A . D 4 HOH 137 3455 146 HOH HOH A . D 4 HOH 138 3456 148 HOH HOH A . D 4 HOH 139 3457 149 HOH HOH A . D 4 HOH 140 3458 150 HOH HOH A . D 4 HOH 141 3459 151 HOH HOH A . D 4 HOH 142 3460 152 HOH HOH A . D 4 HOH 143 3461 153 HOH HOH A . D 4 HOH 144 3462 154 HOH HOH A . D 4 HOH 145 3463 155 HOH HOH A . D 4 HOH 146 3464 156 HOH HOH A . D 4 HOH 147 3465 157 HOH HOH A . D 4 HOH 148 3466 158 HOH HOH A . D 4 HOH 149 3467 159 HOH HOH A . D 4 HOH 150 3468 160 HOH HOH A . D 4 HOH 151 3469 161 HOH HOH A . D 4 HOH 152 3470 162 HOH HOH A . D 4 HOH 153 3471 163 HOH HOH A . D 4 HOH 154 3472 164 HOH HOH A . D 4 HOH 155 3473 165 HOH HOH A . D 4 HOH 156 3474 166 HOH HOH A . D 4 HOH 157 3475 167 HOH HOH A . D 4 HOH 158 3476 168 HOH HOH A . D 4 HOH 159 3477 169 HOH HOH A . D 4 HOH 160 3478 170 HOH HOH A . D 4 HOH 161 3479 171 HOH HOH A . D 4 HOH 162 3480 172 HOH HOH A . D 4 HOH 163 3481 173 HOH HOH A . D 4 HOH 164 3482 175 HOH HOH A . D 4 HOH 165 3483 176 HOH HOH A . D 4 HOH 166 3484 177 HOH HOH A . D 4 HOH 167 3485 178 HOH HOH A . D 4 HOH 168 3486 179 HOH HOH A . D 4 HOH 169 3487 180 HOH HOH A . D 4 HOH 170 3488 182 HOH HOH A . D 4 HOH 171 3489 183 HOH HOH A . D 4 HOH 172 3490 184 HOH HOH A . D 4 HOH 173 3491 185 HOH HOH A . D 4 HOH 174 3492 186 HOH HOH A . D 4 HOH 175 3493 187 HOH HOH A . D 4 HOH 176 3494 188 HOH HOH A . D 4 HOH 177 3495 189 HOH HOH A . D 4 HOH 178 3496 190 HOH HOH A . D 4 HOH 179 3497 191 HOH HOH A . D 4 HOH 180 3498 192 HOH HOH A . D 4 HOH 181 3499 193 HOH HOH A . D 4 HOH 182 3500 194 HOH HOH A . D 4 HOH 183 3501 195 HOH HOH A . D 4 HOH 184 3502 196 HOH HOH A . D 4 HOH 185 3503 198 HOH HOH A . D 4 HOH 186 3504 199 HOH HOH A . D 4 HOH 187 3505 200 HOH HOH A . D 4 HOH 188 3506 201 HOH HOH A . D 4 HOH 189 3507 202 HOH HOH A . D 4 HOH 190 3508 203 HOH HOH A . D 4 HOH 191 3509 204 HOH HOH A . D 4 HOH 192 3510 205 HOH HOH A . D 4 HOH 193 3511 206 HOH HOH A . D 4 HOH 194 3512 207 HOH HOH A . D 4 HOH 195 3513 208 HOH HOH A . D 4 HOH 196 3514 209 HOH HOH A . D 4 HOH 197 3515 210 HOH HOH A . D 4 HOH 198 3516 211 HOH HOH A . D 4 HOH 199 3517 212 HOH HOH A . D 4 HOH 200 3518 213 HOH HOH A . D 4 HOH 201 3519 214 HOH HOH A . D 4 HOH 202 3520 215 HOH HOH A . D 4 HOH 203 3521 216 HOH HOH A . D 4 HOH 204 3522 218 HOH HOH A . D 4 HOH 205 3523 219 HOH HOH A . D 4 HOH 206 3524 220 HOH HOH A . D 4 HOH 207 3525 221 HOH HOH A . D 4 HOH 208 3526 222 HOH HOH A . D 4 HOH 209 3527 223 HOH HOH A . D 4 HOH 210 3528 224 HOH HOH A . D 4 HOH 211 3529 225 HOH HOH A . D 4 HOH 212 3530 226 HOH HOH A . D 4 HOH 213 3531 227 HOH HOH A . D 4 HOH 214 3532 228 HOH HOH A . D 4 HOH 215 3533 229 HOH HOH A . D 4 HOH 216 3534 230 HOH HOH A . D 4 HOH 217 3535 231 HOH HOH A . D 4 HOH 218 3536 232 HOH HOH A . D 4 HOH 219 3537 234 HOH HOH A . D 4 HOH 220 3538 235 HOH HOH A . D 4 HOH 221 3539 236 HOH HOH A . D 4 HOH 222 3540 241 HOH HOH A . D 4 HOH 223 3541 242 HOH HOH A . D 4 HOH 224 3542 243 HOH HOH A . D 4 HOH 225 3543 245 HOH HOH A . D 4 HOH 226 3544 246 HOH HOH A . D 4 HOH 227 3545 249 HOH HOH A . D 4 HOH 228 3546 250 HOH HOH A . D 4 HOH 229 3547 252 HOH HOH A . D 4 HOH 230 3548 253 HOH HOH A . D 4 HOH 231 3549 254 HOH HOH A . D 4 HOH 232 3550 255 HOH HOH A . D 4 HOH 233 3551 256 HOH HOH A . D 4 HOH 234 3552 257 HOH HOH A . D 4 HOH 235 3553 258 HOH HOH A . D 4 HOH 236 3554 259 HOH HOH A . D 4 HOH 237 3555 261 HOH HOH A . D 4 HOH 238 3556 262 HOH HOH A . D 4 HOH 239 3557 263 HOH HOH A . D 4 HOH 240 3558 264 HOH HOH A . D 4 HOH 241 3559 265 HOH HOH A . D 4 HOH 242 3560 267 HOH HOH A . D 4 HOH 243 3561 268 HOH HOH A . D 4 HOH 244 3562 269 HOH HOH A . D 4 HOH 245 3563 270 HOH HOH A . D 4 HOH 246 3564 271 HOH HOH A . D 4 HOH 247 3565 272 HOH HOH A . D 4 HOH 248 3566 273 HOH HOH A . D 4 HOH 249 3567 274 HOH HOH A . D 4 HOH 250 3568 275 HOH HOH A . D 4 HOH 251 3569 276 HOH HOH A . D 4 HOH 252 3570 277 HOH HOH A . D 4 HOH 253 3571 278 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D 2 1 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4450 ? 1 MORE -41 ? 1 'SSA (A^2)' 14150 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 158 ? A HIS 158 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NA ? B HEM . ? A HEM 200 ? 1_555 92.5 ? 2 NE2 ? A HIS 158 ? A HIS 158 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NB ? B HEM . ? A HEM 200 ? 1_555 92.1 ? 3 NA ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NB ? B HEM . ? A HEM 200 ? 1_555 91.1 ? 4 NE2 ? A HIS 158 ? A HIS 158 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NC ? B HEM . ? A HEM 200 ? 1_555 97.6 ? 5 NA ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NC ? B HEM . ? A HEM 200 ? 1_555 169.8 ? 6 NB ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NC ? B HEM . ? A HEM 200 ? 1_555 87.5 ? 7 NE2 ? A HIS 158 ? A HIS 158 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 ND ? B HEM . ? A HEM 200 ? 1_555 99.0 ? 8 NA ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 ND ? B HEM . ? A HEM 200 ? 1_555 89.8 ? 9 NB ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 ND ? B HEM . ? A HEM 200 ? 1_555 168.9 ? 10 NC ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 ND ? B HEM . ? A HEM 200 ? 1_555 89.6 ? 11 NE2 ? A HIS 158 ? A HIS 158 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 O ? D HOH . ? A HOH 3432 ? 1_555 167.6 ? 12 NA ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 O ? D HOH . ? A HOH 3432 ? 1_555 89.0 ? 13 NB ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 O ? D HOH . ? A HOH 3432 ? 1_555 75.5 ? 14 NC ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 O ? D HOH . ? A HOH 3432 ? 1_555 80.9 ? 15 ND ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 O ? D HOH . ? A HOH 3432 ? 1_555 93.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 13 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 14 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 5.9703 9.4478 -1.7530 0.0489 0.0407 0.0568 0.0023 -0.0075 0.0156 1.7667 1.2084 1.1580 -0.0689 -0.8844 0.2915 -0.0677 0.0150 0.0527 -0.0252 -0.0399 -0.0927 0.0122 -0.0782 0.1180 'X-RAY DIFFRACTION' 2 ? refined 18.9212 -1.3172 -4.9326 -0.0026 0.1126 0.4090 0.0295 0.1269 -0.0496 4.6108 7.9010 21.4252 4.5944 -5.1470 0.0987 -0.2912 0.2302 0.0609 0.1904 -1.0416 -1.4384 -0.4869 0.2930 0.9762 'X-RAY DIFFRACTION' 3 ? refined -0.1330 9.4305 7.4538 0.0907 0.0205 0.0491 0.0126 -0.0130 -0.0099 0.4861 2.2349 0.8505 0.0401 -0.2805 0.2943 -0.0077 -0.0252 0.0328 -0.0110 0.0436 -0.0057 0.2465 -0.0431 0.0165 'X-RAY DIFFRACTION' 4 ? refined 10.5230 11.8427 7.5988 0.0811 0.0419 0.0645 -0.0113 -0.0447 -0.0024 0.8768 1.5109 2.0632 0.3773 -0.4869 -0.5796 0.0091 -0.0213 0.0121 -0.0706 0.0476 -0.1825 0.1765 -0.1047 0.1863 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 67 ? 14 . . . . 'X-RAY DIFFRACTION' ? 2 2 A A 76 ? 68 . . . . 'X-RAY DIFFRACTION' ? 3 3 A A 109 ? 77 . . . . 'X-RAY DIFFRACTION' ? 4 4 A A 166 ? 110 . . . . 'X-RAY DIFFRACTION' ? # _pdbx_phasing_MR.entry_id 3EMM _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.424 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.519 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 29.260 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 29.260 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC 5.2.0005 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 3346 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 3435 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 38 ? ? -179.46 149.37 2 1 MET A 75 ? ? -117.15 -135.92 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A LEU 4 ? A LEU 4 5 1 Y 1 A GLN 5 ? A GLN 5 6 1 Y 1 A GLN 6 ? A GLN 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A GLN 8 ? A GLN 8 9 1 Y 1 A ASN 9 ? A ASN 9 10 1 Y 1 A PRO 10 ? A PRO 10 11 1 Y 1 A GLY 11 ? A GLY 11 12 1 Y 1 A GLU 12 ? A GLU 12 13 1 Y 1 A SER 13 ? A SER 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 EDO C1 C N N 74 EDO O1 O N N 75 EDO C2 C N N 76 EDO O2 O N N 77 EDO H11 H N N 78 EDO H12 H N N 79 EDO HO1 H N N 80 EDO H21 H N N 81 EDO H22 H N N 82 EDO HO2 H N N 83 GLN N N N N 84 GLN CA C N S 85 GLN C C N N 86 GLN O O N N 87 GLN CB C N N 88 GLN CG C N N 89 GLN CD C N N 90 GLN OE1 O N N 91 GLN NE2 N N N 92 GLN OXT O N N 93 GLN H H N N 94 GLN H2 H N N 95 GLN HA H N N 96 GLN HB2 H N N 97 GLN HB3 H N N 98 GLN HG2 H N N 99 GLN HG3 H N N 100 GLN HE21 H N N 101 GLN HE22 H N N 102 GLN HXT H N N 103 GLU N N N N 104 GLU CA C N S 105 GLU C C N N 106 GLU O O N N 107 GLU CB C N N 108 GLU CG C N N 109 GLU CD C N N 110 GLU OE1 O N N 111 GLU OE2 O N N 112 GLU OXT O N N 113 GLU H H N N 114 GLU H2 H N N 115 GLU HA H N N 116 GLU HB2 H N N 117 GLU HB3 H N N 118 GLU HG2 H N N 119 GLU HG3 H N N 120 GLU HE2 H N N 121 GLU HXT H N N 122 GLY N N N N 123 GLY CA C N N 124 GLY C C N N 125 GLY O O N N 126 GLY OXT O N N 127 GLY H H N N 128 GLY H2 H N N 129 GLY HA2 H N N 130 GLY HA3 H N N 131 GLY HXT H N N 132 HEM CHA C N N 133 HEM CHB C N N 134 HEM CHC C N N 135 HEM CHD C N N 136 HEM C1A C Y N 137 HEM C2A C Y N 138 HEM C3A C Y N 139 HEM C4A C Y N 140 HEM CMA C N N 141 HEM CAA C N N 142 HEM CBA C N N 143 HEM CGA C N N 144 HEM O1A O N N 145 HEM O2A O N N 146 HEM C1B C N N 147 HEM C2B C N N 148 HEM C3B C N N 149 HEM C4B C N N 150 HEM CMB C N N 151 HEM CAB C N N 152 HEM CBB C N N 153 HEM C1C C Y N 154 HEM C2C C Y N 155 HEM C3C C Y N 156 HEM C4C C Y N 157 HEM CMC C N N 158 HEM CAC C N N 159 HEM CBC C N N 160 HEM C1D C N N 161 HEM C2D C N N 162 HEM C3D C N N 163 HEM C4D C N N 164 HEM CMD C N N 165 HEM CAD C N N 166 HEM CBD C N N 167 HEM CGD C N N 168 HEM O1D O N N 169 HEM O2D O N N 170 HEM NA N Y N 171 HEM NB N N N 172 HEM NC N Y N 173 HEM ND N N N 174 HEM FE FE N N 175 HEM HHB H N N 176 HEM HHC H N N 177 HEM HHD H N N 178 HEM HMA H N N 179 HEM HMAA H N N 180 HEM HMAB H N N 181 HEM HAA H N N 182 HEM HAAA H N N 183 HEM HBA H N N 184 HEM HBAA H N N 185 HEM HMB H N N 186 HEM HMBA H N N 187 HEM HMBB H N N 188 HEM HAB H N N 189 HEM HBB H N N 190 HEM HBBA H N N 191 HEM HMC H N N 192 HEM HMCA H N N 193 HEM HMCB H N N 194 HEM HAC H N N 195 HEM HBC H N N 196 HEM HBCA H N N 197 HEM HMD H N N 198 HEM HMDA H N N 199 HEM HMDB H N N 200 HEM HAD H N N 201 HEM HADA H N N 202 HEM HBD H N N 203 HEM HBDA H N N 204 HEM H2A H N N 205 HEM H2D H N N 206 HEM HHA H N N 207 HIS N N N N 208 HIS CA C N S 209 HIS C C N N 210 HIS O O N N 211 HIS CB C N N 212 HIS CG C Y N 213 HIS ND1 N Y N 214 HIS CD2 C Y N 215 HIS CE1 C Y N 216 HIS NE2 N Y N 217 HIS OXT O N N 218 HIS H H N N 219 HIS H2 H N N 220 HIS HA H N N 221 HIS HB2 H N N 222 HIS HB3 H N N 223 HIS HD1 H N N 224 HIS HD2 H N N 225 HIS HE1 H N N 226 HIS HE2 H N N 227 HIS HXT H N N 228 HOH O O N N 229 HOH H1 H N N 230 HOH H2 H N N 231 ILE N N N N 232 ILE CA C N S 233 ILE C C N N 234 ILE O O N N 235 ILE CB C N S 236 ILE CG1 C N N 237 ILE CG2 C N N 238 ILE CD1 C N N 239 ILE OXT O N N 240 ILE H H N N 241 ILE H2 H N N 242 ILE HA H N N 243 ILE HB H N N 244 ILE HG12 H N N 245 ILE HG13 H N N 246 ILE HG21 H N N 247 ILE HG22 H N N 248 ILE HG23 H N N 249 ILE HD11 H N N 250 ILE HD12 H N N 251 ILE HD13 H N N 252 ILE HXT H N N 253 LEU N N N N 254 LEU CA C N S 255 LEU C C N N 256 LEU O O N N 257 LEU CB C N N 258 LEU CG C N N 259 LEU CD1 C N N 260 LEU CD2 C N N 261 LEU OXT O N N 262 LEU H H N N 263 LEU H2 H N N 264 LEU HA H N N 265 LEU HB2 H N N 266 LEU HB3 H N N 267 LEU HG H N N 268 LEU HD11 H N N 269 LEU HD12 H N N 270 LEU HD13 H N N 271 LEU HD21 H N N 272 LEU HD22 H N N 273 LEU HD23 H N N 274 LEU HXT H N N 275 LYS N N N N 276 LYS CA C N S 277 LYS C C N N 278 LYS O O N N 279 LYS CB C N N 280 LYS CG C N N 281 LYS CD C N N 282 LYS CE C N N 283 LYS NZ N N N 284 LYS OXT O N N 285 LYS H H N N 286 LYS H2 H N N 287 LYS HA H N N 288 LYS HB2 H N N 289 LYS HB3 H N N 290 LYS HG2 H N N 291 LYS HG3 H N N 292 LYS HD2 H N N 293 LYS HD3 H N N 294 LYS HE2 H N N 295 LYS HE3 H N N 296 LYS HZ1 H N N 297 LYS HZ2 H N N 298 LYS HZ3 H N N 299 LYS HXT H N N 300 MET N N N N 301 MET CA C N S 302 MET C C N N 303 MET O O N N 304 MET CB C N N 305 MET CG C N N 306 MET SD S N N 307 MET CE C N N 308 MET OXT O N N 309 MET H H N N 310 MET H2 H N N 311 MET HA H N N 312 MET HB2 H N N 313 MET HB3 H N N 314 MET HG2 H N N 315 MET HG3 H N N 316 MET HE1 H N N 317 MET HE2 H N N 318 MET HE3 H N N 319 MET HXT H N N 320 PHE N N N N 321 PHE CA C N S 322 PHE C C N N 323 PHE O O N N 324 PHE CB C N N 325 PHE CG C Y N 326 PHE CD1 C Y N 327 PHE CD2 C Y N 328 PHE CE1 C Y N 329 PHE CE2 C Y N 330 PHE CZ C Y N 331 PHE OXT O N N 332 PHE H H N N 333 PHE H2 H N N 334 PHE HA H N N 335 PHE HB2 H N N 336 PHE HB3 H N N 337 PHE HD1 H N N 338 PHE HD2 H N N 339 PHE HE1 H N N 340 PHE HE2 H N N 341 PHE HZ H N N 342 PHE HXT H N N 343 PRO N N N N 344 PRO CA C N S 345 PRO C C N N 346 PRO O O N N 347 PRO CB C N N 348 PRO CG C N N 349 PRO CD C N N 350 PRO OXT O N N 351 PRO H H N N 352 PRO HA H N N 353 PRO HB2 H N N 354 PRO HB3 H N N 355 PRO HG2 H N N 356 PRO HG3 H N N 357 PRO HD2 H N N 358 PRO HD3 H N N 359 PRO HXT H N N 360 SER N N N N 361 SER CA C N S 362 SER C C N N 363 SER O O N N 364 SER CB C N N 365 SER OG O N N 366 SER OXT O N N 367 SER H H N N 368 SER H2 H N N 369 SER HA H N N 370 SER HB2 H N N 371 SER HB3 H N N 372 SER HG H N N 373 SER HXT H N N 374 THR N N N N 375 THR CA C N S 376 THR C C N N 377 THR O O N N 378 THR CB C N R 379 THR OG1 O N N 380 THR CG2 C N N 381 THR OXT O N N 382 THR H H N N 383 THR H2 H N N 384 THR HA H N N 385 THR HB H N N 386 THR HG1 H N N 387 THR HG21 H N N 388 THR HG22 H N N 389 THR HG23 H N N 390 THR HXT H N N 391 TRP N N N N 392 TRP CA C N S 393 TRP C C N N 394 TRP O O N N 395 TRP CB C N N 396 TRP CG C Y N 397 TRP CD1 C Y N 398 TRP CD2 C Y N 399 TRP NE1 N Y N 400 TRP CE2 C Y N 401 TRP CE3 C Y N 402 TRP CZ2 C Y N 403 TRP CZ3 C Y N 404 TRP CH2 C Y N 405 TRP OXT O N N 406 TRP H H N N 407 TRP H2 H N N 408 TRP HA H N N 409 TRP HB2 H N N 410 TRP HB3 H N N 411 TRP HD1 H N N 412 TRP HE1 H N N 413 TRP HE3 H N N 414 TRP HZ2 H N N 415 TRP HZ3 H N N 416 TRP HH2 H N N 417 TRP HXT H N N 418 TYR N N N N 419 TYR CA C N S 420 TYR C C N N 421 TYR O O N N 422 TYR CB C N N 423 TYR CG C Y N 424 TYR CD1 C Y N 425 TYR CD2 C Y N 426 TYR CE1 C Y N 427 TYR CE2 C Y N 428 TYR CZ C Y N 429 TYR OH O N N 430 TYR OXT O N N 431 TYR H H N N 432 TYR H2 H N N 433 TYR HA H N N 434 TYR HB2 H N N 435 TYR HB3 H N N 436 TYR HD1 H N N 437 TYR HD2 H N N 438 TYR HE1 H N N 439 TYR HE2 H N N 440 TYR HH H N N 441 TYR HXT H N N 442 VAL N N N N 443 VAL CA C N S 444 VAL C C N N 445 VAL O O N N 446 VAL CB C N N 447 VAL CG1 C N N 448 VAL CG2 C N N 449 VAL OXT O N N 450 VAL H H N N 451 VAL H2 H N N 452 VAL HA H N N 453 VAL HB H N N 454 VAL HG11 H N N 455 VAL HG12 H N N 456 VAL HG13 H N N 457 VAL HG21 H N N 458 VAL HG22 H N N 459 VAL HG23 H N N 460 VAL HXT H N N 461 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 EDO C1 O1 sing N N 70 EDO C1 C2 sing N N 71 EDO C1 H11 sing N N 72 EDO C1 H12 sing N N 73 EDO O1 HO1 sing N N 74 EDO C2 O2 sing N N 75 EDO C2 H21 sing N N 76 EDO C2 H22 sing N N 77 EDO O2 HO2 sing N N 78 GLN N CA sing N N 79 GLN N H sing N N 80 GLN N H2 sing N N 81 GLN CA C sing N N 82 GLN CA CB sing N N 83 GLN CA HA sing N N 84 GLN C O doub N N 85 GLN C OXT sing N N 86 GLN CB CG sing N N 87 GLN CB HB2 sing N N 88 GLN CB HB3 sing N N 89 GLN CG CD sing N N 90 GLN CG HG2 sing N N 91 GLN CG HG3 sing N N 92 GLN CD OE1 doub N N 93 GLN CD NE2 sing N N 94 GLN NE2 HE21 sing N N 95 GLN NE2 HE22 sing N N 96 GLN OXT HXT sing N N 97 GLU N CA sing N N 98 GLU N H sing N N 99 GLU N H2 sing N N 100 GLU CA C sing N N 101 GLU CA CB sing N N 102 GLU CA HA sing N N 103 GLU C O doub N N 104 GLU C OXT sing N N 105 GLU CB CG sing N N 106 GLU CB HB2 sing N N 107 GLU CB HB3 sing N N 108 GLU CG CD sing N N 109 GLU CG HG2 sing N N 110 GLU CG HG3 sing N N 111 GLU CD OE1 doub N N 112 GLU CD OE2 sing N N 113 GLU OE2 HE2 sing N N 114 GLU OXT HXT sing N N 115 GLY N CA sing N N 116 GLY N H sing N N 117 GLY N H2 sing N N 118 GLY CA C sing N N 119 GLY CA HA2 sing N N 120 GLY CA HA3 sing N N 121 GLY C O doub N N 122 GLY C OXT sing N N 123 GLY OXT HXT sing N N 124 HEM CHA C1A sing N N 125 HEM CHA C4D doub N N 126 HEM CHA HHA sing N N 127 HEM CHB C4A sing N N 128 HEM CHB C1B doub N N 129 HEM CHB HHB sing N N 130 HEM CHC C4B sing N N 131 HEM CHC C1C doub N N 132 HEM CHC HHC sing N N 133 HEM CHD C4C doub N N 134 HEM CHD C1D sing N N 135 HEM CHD HHD sing N N 136 HEM C1A C2A doub Y N 137 HEM C1A NA sing Y N 138 HEM C2A C3A sing Y N 139 HEM C2A CAA sing N N 140 HEM C3A C4A doub Y N 141 HEM C3A CMA sing N N 142 HEM C4A NA sing Y N 143 HEM CMA HMA sing N N 144 HEM CMA HMAA sing N N 145 HEM CMA HMAB sing N N 146 HEM CAA CBA sing N N 147 HEM CAA HAA sing N N 148 HEM CAA HAAA sing N N 149 HEM CBA CGA sing N N 150 HEM CBA HBA sing N N 151 HEM CBA HBAA sing N N 152 HEM CGA O1A doub N N 153 HEM CGA O2A sing N N 154 HEM C1B C2B sing N N 155 HEM C1B NB sing N N 156 HEM C2B C3B doub N N 157 HEM C2B CMB sing N N 158 HEM C3B C4B sing N N 159 HEM C3B CAB sing N N 160 HEM C4B NB doub N N 161 HEM CMB HMB sing N N 162 HEM CMB HMBA sing N N 163 HEM CMB HMBB sing N N 164 HEM CAB CBB doub N N 165 HEM CAB HAB sing N N 166 HEM CBB HBB sing N N 167 HEM CBB HBBA sing N N 168 HEM C1C C2C sing Y N 169 HEM C1C NC sing Y N 170 HEM C2C C3C doub Y N 171 HEM C2C CMC sing N N 172 HEM C3C C4C sing Y N 173 HEM C3C CAC sing N N 174 HEM C4C NC sing Y N 175 HEM CMC HMC sing N N 176 HEM CMC HMCA sing N N 177 HEM CMC HMCB sing N N 178 HEM CAC CBC doub N N 179 HEM CAC HAC sing N N 180 HEM CBC HBC sing N N 181 HEM CBC HBCA sing N N 182 HEM C1D C2D sing N N 183 HEM C1D ND doub N N 184 HEM C2D C3D doub N N 185 HEM C2D CMD sing N N 186 HEM C3D C4D sing N N 187 HEM C3D CAD sing N N 188 HEM C4D ND sing N N 189 HEM CMD HMD sing N N 190 HEM CMD HMDA sing N N 191 HEM CMD HMDB sing N N 192 HEM CAD CBD sing N N 193 HEM CAD HAD sing N N 194 HEM CAD HADA sing N N 195 HEM CBD CGD sing N N 196 HEM CBD HBD sing N N 197 HEM CBD HBDA sing N N 198 HEM CGD O1D doub N N 199 HEM CGD O2D sing N N 200 HEM O2A H2A sing N N 201 HEM O2D H2D sing N N 202 HEM FE NA sing N N 203 HEM FE NB sing N N 204 HEM FE NC sing N N 205 HEM FE ND sing N N 206 HIS N CA sing N N 207 HIS N H sing N N 208 HIS N H2 sing N N 209 HIS CA C sing N N 210 HIS CA CB sing N N 211 HIS CA HA sing N N 212 HIS C O doub N N 213 HIS C OXT sing N N 214 HIS CB CG sing N N 215 HIS CB HB2 sing N N 216 HIS CB HB3 sing N N 217 HIS CG ND1 sing Y N 218 HIS CG CD2 doub Y N 219 HIS ND1 CE1 doub Y N 220 HIS ND1 HD1 sing N N 221 HIS CD2 NE2 sing Y N 222 HIS CD2 HD2 sing N N 223 HIS CE1 NE2 sing Y N 224 HIS CE1 HE1 sing N N 225 HIS NE2 HE2 sing N N 226 HIS OXT HXT sing N N 227 HOH O H1 sing N N 228 HOH O H2 sing N N 229 ILE N CA sing N N 230 ILE N H sing N N 231 ILE N H2 sing N N 232 ILE CA C sing N N 233 ILE CA CB sing N N 234 ILE CA HA sing N N 235 ILE C O doub N N 236 ILE C OXT sing N N 237 ILE CB CG1 sing N N 238 ILE CB CG2 sing N N 239 ILE CB HB sing N N 240 ILE CG1 CD1 sing N N 241 ILE CG1 HG12 sing N N 242 ILE CG1 HG13 sing N N 243 ILE CG2 HG21 sing N N 244 ILE CG2 HG22 sing N N 245 ILE CG2 HG23 sing N N 246 ILE CD1 HD11 sing N N 247 ILE CD1 HD12 sing N N 248 ILE CD1 HD13 sing N N 249 ILE OXT HXT sing N N 250 LEU N CA sing N N 251 LEU N H sing N N 252 LEU N H2 sing N N 253 LEU CA C sing N N 254 LEU CA CB sing N N 255 LEU CA HA sing N N 256 LEU C O doub N N 257 LEU C OXT sing N N 258 LEU CB CG sing N N 259 LEU CB HB2 sing N N 260 LEU CB HB3 sing N N 261 LEU CG CD1 sing N N 262 LEU CG CD2 sing N N 263 LEU CG HG sing N N 264 LEU CD1 HD11 sing N N 265 LEU CD1 HD12 sing N N 266 LEU CD1 HD13 sing N N 267 LEU CD2 HD21 sing N N 268 LEU CD2 HD22 sing N N 269 LEU CD2 HD23 sing N N 270 LEU OXT HXT sing N N 271 LYS N CA sing N N 272 LYS N H sing N N 273 LYS N H2 sing N N 274 LYS CA C sing N N 275 LYS CA CB sing N N 276 LYS CA HA sing N N 277 LYS C O doub N N 278 LYS C OXT sing N N 279 LYS CB CG sing N N 280 LYS CB HB2 sing N N 281 LYS CB HB3 sing N N 282 LYS CG CD sing N N 283 LYS CG HG2 sing N N 284 LYS CG HG3 sing N N 285 LYS CD CE sing N N 286 LYS CD HD2 sing N N 287 LYS CD HD3 sing N N 288 LYS CE NZ sing N N 289 LYS CE HE2 sing N N 290 LYS CE HE3 sing N N 291 LYS NZ HZ1 sing N N 292 LYS NZ HZ2 sing N N 293 LYS NZ HZ3 sing N N 294 LYS OXT HXT sing N N 295 MET N CA sing N N 296 MET N H sing N N 297 MET N H2 sing N N 298 MET CA C sing N N 299 MET CA CB sing N N 300 MET CA HA sing N N 301 MET C O doub N N 302 MET C OXT sing N N 303 MET CB CG sing N N 304 MET CB HB2 sing N N 305 MET CB HB3 sing N N 306 MET CG SD sing N N 307 MET CG HG2 sing N N 308 MET CG HG3 sing N N 309 MET SD CE sing N N 310 MET CE HE1 sing N N 311 MET CE HE2 sing N N 312 MET CE HE3 sing N N 313 MET OXT HXT sing N N 314 PHE N CA sing N N 315 PHE N H sing N N 316 PHE N H2 sing N N 317 PHE CA C sing N N 318 PHE CA CB sing N N 319 PHE CA HA sing N N 320 PHE C O doub N N 321 PHE C OXT sing N N 322 PHE CB CG sing N N 323 PHE CB HB2 sing N N 324 PHE CB HB3 sing N N 325 PHE CG CD1 doub Y N 326 PHE CG CD2 sing Y N 327 PHE CD1 CE1 sing Y N 328 PHE CD1 HD1 sing N N 329 PHE CD2 CE2 doub Y N 330 PHE CD2 HD2 sing N N 331 PHE CE1 CZ doub Y N 332 PHE CE1 HE1 sing N N 333 PHE CE2 CZ sing Y N 334 PHE CE2 HE2 sing N N 335 PHE CZ HZ sing N N 336 PHE OXT HXT sing N N 337 PRO N CA sing N N 338 PRO N CD sing N N 339 PRO N H sing N N 340 PRO CA C sing N N 341 PRO CA CB sing N N 342 PRO CA HA sing N N 343 PRO C O doub N N 344 PRO C OXT sing N N 345 PRO CB CG sing N N 346 PRO CB HB2 sing N N 347 PRO CB HB3 sing N N 348 PRO CG CD sing N N 349 PRO CG HG2 sing N N 350 PRO CG HG3 sing N N 351 PRO CD HD2 sing N N 352 PRO CD HD3 sing N N 353 PRO OXT HXT sing N N 354 SER N CA sing N N 355 SER N H sing N N 356 SER N H2 sing N N 357 SER CA C sing N N 358 SER CA CB sing N N 359 SER CA HA sing N N 360 SER C O doub N N 361 SER C OXT sing N N 362 SER CB OG sing N N 363 SER CB HB2 sing N N 364 SER CB HB3 sing N N 365 SER OG HG sing N N 366 SER OXT HXT sing N N 367 THR N CA sing N N 368 THR N H sing N N 369 THR N H2 sing N N 370 THR CA C sing N N 371 THR CA CB sing N N 372 THR CA HA sing N N 373 THR C O doub N N 374 THR C OXT sing N N 375 THR CB OG1 sing N N 376 THR CB CG2 sing N N 377 THR CB HB sing N N 378 THR OG1 HG1 sing N N 379 THR CG2 HG21 sing N N 380 THR CG2 HG22 sing N N 381 THR CG2 HG23 sing N N 382 THR OXT HXT sing N N 383 TRP N CA sing N N 384 TRP N H sing N N 385 TRP N H2 sing N N 386 TRP CA C sing N N 387 TRP CA CB sing N N 388 TRP CA HA sing N N 389 TRP C O doub N N 390 TRP C OXT sing N N 391 TRP CB CG sing N N 392 TRP CB HB2 sing N N 393 TRP CB HB3 sing N N 394 TRP CG CD1 doub Y N 395 TRP CG CD2 sing Y N 396 TRP CD1 NE1 sing Y N 397 TRP CD1 HD1 sing N N 398 TRP CD2 CE2 doub Y N 399 TRP CD2 CE3 sing Y N 400 TRP NE1 CE2 sing Y N 401 TRP NE1 HE1 sing N N 402 TRP CE2 CZ2 sing Y N 403 TRP CE3 CZ3 doub Y N 404 TRP CE3 HE3 sing N N 405 TRP CZ2 CH2 doub Y N 406 TRP CZ2 HZ2 sing N N 407 TRP CZ3 CH2 sing Y N 408 TRP CZ3 HZ3 sing N N 409 TRP CH2 HH2 sing N N 410 TRP OXT HXT sing N N 411 TYR N CA sing N N 412 TYR N H sing N N 413 TYR N H2 sing N N 414 TYR CA C sing N N 415 TYR CA CB sing N N 416 TYR CA HA sing N N 417 TYR C O doub N N 418 TYR C OXT sing N N 419 TYR CB CG sing N N 420 TYR CB HB2 sing N N 421 TYR CB HB3 sing N N 422 TYR CG CD1 doub Y N 423 TYR CG CD2 sing Y N 424 TYR CD1 CE1 sing Y N 425 TYR CD1 HD1 sing N N 426 TYR CD2 CE2 doub Y N 427 TYR CD2 HD2 sing N N 428 TYR CE1 CZ doub Y N 429 TYR CE1 HE1 sing N N 430 TYR CE2 CZ sing Y N 431 TYR CE2 HE2 sing N N 432 TYR CZ OH sing N N 433 TYR OH HH sing N N 434 TYR OXT HXT sing N N 435 VAL N CA sing N N 436 VAL N H sing N N 437 VAL N H2 sing N N 438 VAL CA C sing N N 439 VAL CA CB sing N N 440 VAL CA HA sing N N 441 VAL C O doub N N 442 VAL C OXT sing N N 443 VAL CB CG1 sing N N 444 VAL CB CG2 sing N N 445 VAL CB HB sing N N 446 VAL CG1 HG11 sing N N 447 VAL CG1 HG12 sing N N 448 VAL CG1 HG13 sing N N 449 VAL CG2 HG21 sing N N 450 VAL CG2 HG22 sing N N 451 VAL CG2 HG23 sing N N 452 VAL OXT HXT sing N N 453 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 1,2-ETHANEDIOL EDO 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2A13 _pdbx_initial_refinement_model.details 'PDB entry 2A13' #