data_3ERE # _entry.id 3ERE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ERE pdb_00003ere 10.2210/pdb3ere/pdb NDB PD1188 ? ? RCSB RCSB049674 ? ? WWPDB D_1000049674 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type TargetDB Rv1657 . unspecified PDB 3BUE 'Crystal structure of the C-terminal domain hexamer of ArgR from Mycobacterium tuberculosis' unspecified PDB 2ZFZ 'Crystal structure of the C-terminal domain hexamer of ArgR from Mycobacterium tuberculosis in complex with arginine' unspecified PDB 3CAG ;Crystal structure of the oligomerization domain hexamer of the arginine repressor protein from Mycobacterium tuberculosis in complex with 9 arginines. ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3ERE _pdbx_database_status.recvd_initial_deposition_date 2008-10-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cherney, L.T.' 1 'Cherney, M.M.' 2 'Garen, C.R.' 3 'Lu, G.J.' 4 'James, M.N.' 5 'TB Structural Genomics Consortium (TBSGC)' 6 # _citation.id primary _citation.title 'Crystal structure of the arginine repressor protein in complex with the DNA operator from Mycobacterium tuberculosis.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 384 _citation.page_first 1330 _citation.page_last 1340 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18952097 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.10.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cherney, L.T.' 1 ? primary 'Cherney, M.M.' 2 ? primary 'Garen, C.R.' 3 ? primary 'Lu, G.J.' 4 ? primary 'James, M.N.' 5 ? # _cell.entry_id 3ERE _cell.length_a 94.128 _cell.length_b 94.128 _cell.length_c 147.014 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3ERE _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Arginine repressor' 17366.635 1 ? ? ? ? 2 polymer syn "5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DAP*DAP*DCP*DGP*DAP*DTP*DGP*DCP*DAP*DA)-3'" 4906.217 1 ? ? ? 'ArgR box DNA segment, strand A' 3 polymer syn "5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DCP*DGP*DTP*DTP*DAP*DTP*DGP*DCP*DAP*DA)-3'" 4888.189 1 ? ? ? 'ArgR box DNA segment, strand B' 4 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 5 water nat water 18.015 93 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSRAKAAPVAGPEVAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVV PEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGA QLAGMFENLR ; ;MSRAKAAPVAGPEVAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVV PEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGA QLAGMFENLR ; D Rv1657 2 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DC)(DA)(DT)(DA)(DA)(DC)(DG)(DA)(DT)(DG)(DC)(DA)(DA)' TTGCATAACGATGCAA A ? 3 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DC)(DA)(DT)(DC)(DG)(DT)(DT)(DA)(DT)(DG)(DC)(DA)(DA)' TTGCATCGTTATGCAA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 ARG n 1 4 ALA n 1 5 LYS n 1 6 ALA n 1 7 ALA n 1 8 PRO n 1 9 VAL n 1 10 ALA n 1 11 GLY n 1 12 PRO n 1 13 GLU n 1 14 VAL n 1 15 ALA n 1 16 ALA n 1 17 ASN n 1 18 ARG n 1 19 ALA n 1 20 GLY n 1 21 ARG n 1 22 GLN n 1 23 ALA n 1 24 ARG n 1 25 ILE n 1 26 VAL n 1 27 ALA n 1 28 ILE n 1 29 LEU n 1 30 SER n 1 31 SER n 1 32 ALA n 1 33 GLN n 1 34 VAL n 1 35 ARG n 1 36 SER n 1 37 GLN n 1 38 ASN n 1 39 GLU n 1 40 LEU n 1 41 ALA n 1 42 ALA n 1 43 LEU n 1 44 LEU n 1 45 ALA n 1 46 ALA n 1 47 GLU n 1 48 GLY n 1 49 ILE n 1 50 GLU n 1 51 VAL n 1 52 THR n 1 53 GLN n 1 54 ALA n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 ARG n 1 59 ASP n 1 60 LEU n 1 61 GLU n 1 62 GLU n 1 63 LEU n 1 64 GLY n 1 65 ALA n 1 66 VAL n 1 67 LYS n 1 68 LEU n 1 69 ARG n 1 70 GLY n 1 71 ALA n 1 72 ASP n 1 73 GLY n 1 74 GLY n 1 75 THR n 1 76 GLY n 1 77 ILE n 1 78 TYR n 1 79 VAL n 1 80 VAL n 1 81 PRO n 1 82 GLU n 1 83 ASP n 1 84 GLY n 1 85 SER n 1 86 PRO n 1 87 VAL n 1 88 ARG n 1 89 GLY n 1 90 VAL n 1 91 SER n 1 92 GLY n 1 93 GLY n 1 94 THR n 1 95 ASP n 1 96 ARG n 1 97 MET n 1 98 ALA n 1 99 ARG n 1 100 LEU n 1 101 LEU n 1 102 GLY n 1 103 GLU n 1 104 LEU n 1 105 LEU n 1 106 VAL n 1 107 SER n 1 108 THR n 1 109 ASP n 1 110 ASP n 1 111 SER n 1 112 GLY n 1 113 ASN n 1 114 LEU n 1 115 ALA n 1 116 VAL n 1 117 LEU n 1 118 ARG n 1 119 THR n 1 120 PRO n 1 121 PRO n 1 122 GLY n 1 123 ALA n 1 124 ALA n 1 125 HIS n 1 126 TYR n 1 127 LEU n 1 128 ALA n 1 129 SER n 1 130 ALA n 1 131 ILE n 1 132 ASP n 1 133 ARG n 1 134 ALA n 1 135 ALA n 1 136 LEU n 1 137 PRO n 1 138 GLN n 1 139 VAL n 1 140 VAL n 1 141 GLY n 1 142 THR n 1 143 ILE n 1 144 ALA n 1 145 GLY n 1 146 ASP n 1 147 ASP n 1 148 THR n 1 149 ILE n 1 150 LEU n 1 151 VAL n 1 152 VAL n 1 153 ALA n 1 154 ARG n 1 155 GLU n 1 156 PRO n 1 157 THR n 1 158 THR n 1 159 GLY n 1 160 ALA n 1 161 GLN n 1 162 LEU n 1 163 ALA n 1 164 GLY n 1 165 MET n 1 166 PHE n 1 167 GLU n 1 168 ASN n 1 169 LEU n 1 170 ARG n 2 1 DT n 2 2 DT n 2 3 DG n 2 4 DC n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DC n 2 10 DG n 2 11 DA n 2 12 DT n 2 13 DG n 2 14 DC n 2 15 DA n 2 16 DA n 3 1 DT n 3 2 DT n 3 3 DG n 3 4 DC n 3 5 DA n 3 6 DT n 3 7 DC n 3 8 DG n 3 9 DT n 3 10 DT n 3 11 DA n 3 12 DT n 3 13 DG n 3 14 DC n 3 15 DA n 3 16 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'argR, ahrC, Rv1657, MT1695, MTCY06H11.22' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain H37Rv _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 25618 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGST-1657 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'DNA strand A' 3 1 sample ? ? ? ? ? 'DNA strand B' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ARGR_MYCTU P0A4Y8 1 ;MSRAKAAPVAGPEVAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVV PEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGA QLAGMFENLR ; 1 ? 2 PDB 3ERE 3ERE 2 TTGCATAACGATGCAA 1 ? 3 PDB 3ERE 3ERE 3 TTGCATCGTTATGCAA 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ERE D 1 ? 170 ? P0A4Y8 1 ? 170 ? 1 170 2 2 3ERE A 1 ? 16 ? 3ERE 1 ? 16 ? 1 16 3 3 3ERE B 1 ? 16 ? 3ERE 1 ? 16 ? 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3ERE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.46 _exptl_crystal.density_percent_sol 64.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '1M Ammonium sulfate, 100 mM Bis-tris buffer, 1% PEG 3350, pH 5.5, VAPOR DIFFUSION, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Ammonium sulfate' ? ? ? 1 2 1 Bis-tris ? ? ? 1 3 1 'PEG 3350' ? ? ? 1 4 2 'Ammonium sulfate' ? ? ? 1 5 2 Bis-tris ? ? ? 1 6 2 'PEG 3350' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-01-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11588 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.11588 # _reflns.entry_id 3ERE _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.50 _reflns.number_obs 13952 _reflns.number_all 13952 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 36.0 _reflns.B_iso_Wilson_estimate 76.4 _reflns.pdbx_redundancy 11.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.802 _reflns_shell.pdbx_Rsym_value 0.802 _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 10.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1337 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3ERE _refine.ls_number_reflns_obs 13917 _refine.ls_number_reflns_all 13950 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.2274 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2274 _refine.ls_R_factor_R_free 0.2554 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 700 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB entries 2FZF, 1B4A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1122 _refine_hist.pdbx_number_atoms_nucleic_acid 650 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1880 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1061 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.59 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 941 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3ERE _struct.title 'Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ERE _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;Mycobacterium tuberculosis, arginine repressor protein, DNA binding, ArgR-operator complex, Structural Genomics, TB structural genomics, TB Structural Genomics Consortium, TBSGC, Amino-acid biosynthesis, Arginine biosynthesis, DNA-binding, Transcription, Transcription regulation, DNA BINDING PROTEIN-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ;The biological unit is a trimer generated by the three-fold crystallographic axis or a dimer of trimers that associate by the antiparallel packing dimer interface. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 17 ? SER A 31 ? ASN D 17 SER D 31 1 ? 15 HELX_P HELX_P2 2 SER A 36 ? GLU A 47 ? SER D 36 GLU D 47 1 ? 12 HELX_P HELX_P3 3 THR A 52 ? GLU A 62 ? THR D 52 GLU D 62 1 ? 11 HELX_P HELX_P4 4 GLY A 93 ? LEU A 105 ? GLY D 93 LEU D 105 1 ? 13 HELX_P HELX_P5 5 ALA A 123 ? ALA A 134 ? ALA D 123 ALA D 134 1 ? 12 HELX_P HELX_P6 6 THR A 158 ? ASN A 168 ? THR D 158 ASN D 168 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DA 16 N1 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 1 O4 ? ? ? 1_555 C DA 16 N6 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 15 N1 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 15 N6 ? ? A DT 2 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 14 N3 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 14 O2 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 14 N4 ? ? A DG 3 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 13 N1 ? ? A DC 4 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 13 O6 ? ? A DC 4 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 13 N2 ? ? A DC 4 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 12 N3 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 12 O4 ? ? A DA 5 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 11 N1 ? ? A DT 6 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 11 N6 ? ? A DT 6 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 10 N3 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 10 O4 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 9 N3 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 9 O4 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 8 N1 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 8 O6 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 8 N2 ? ? A DC 9 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 7 N3 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 7 O2 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 7 N4 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 6 N3 ? ? A DA 11 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 6 O4 ? ? A DA 11 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 5 N1 ? ? A DT 12 B DA 5 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog28 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 4 N3 ? ? A DG 13 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 4 O2 ? ? A DG 13 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 4 N4 ? ? A DG 13 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 3 N1 ? ? A DC 14 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 3 O6 ? ? A DC 14 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 3 N2 ? ? A DC 14 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 2 N3 ? ? A DA 15 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 15 N6 ? ? ? 1_555 C DT 2 O4 ? ? A DA 15 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DA 16 N1 ? ? ? 1_555 C DT 1 N3 ? ? A DA 16 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DA 16 N6 ? ? ? 1_555 C DT 1 O4 ? ? A DA 16 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 85 A . ? SER 85 D PRO 86 A ? PRO 86 D 1 0.04 2 GLU 155 A . ? GLU 155 D PRO 156 A ? PRO 156 D 1 0.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 66 ? ARG A 69 ? VAL D 66 ARG D 69 A 2 THR A 75 ? VAL A 79 ? THR D 75 VAL D 79 B 1 SER A 107 ? SER A 111 ? SER D 107 SER D 111 B 2 LEU A 114 ? ARG A 118 ? LEU D 114 ARG D 118 B 3 THR A 148 ? ALA A 153 ? THR D 148 ALA D 153 B 4 VAL A 139 ? ALA A 144 ? VAL D 139 ALA D 144 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 66 ? N VAL D 66 O VAL A 79 ? O VAL D 79 B 1 2 N ASP A 109 ? N ASP D 109 O VAL A 116 ? O VAL D 116 B 2 3 N ALA A 115 ? N ALA D 115 O VAL A 151 ? O VAL D 151 B 3 4 O VAL A 152 ? O VAL D 152 N VAL A 140 ? N VAL D 140 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D SO4 171 ? 8 'BINDING SITE FOR RESIDUE SO4 D 171' AC2 Software D SO4 172 ? 9 'BINDING SITE FOR RESIDUE SO4 D 172' AC3 Software D SO4 173 ? 1 'BINDING SITE FOR RESIDUE SO4 D 173' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HIS A 125 ? HIS D 125 . ? 1_555 ? 2 AC1 8 ASP A 132 ? ASP D 132 . ? 1_555 ? 3 AC1 8 THR A 142 ? THR D 142 . ? 1_555 ? 4 AC1 8 ALA A 144 ? ALA D 144 . ? 1_555 ? 5 AC1 8 ASP A 146 ? ASP D 146 . ? 3_565 ? 6 AC1 8 ASP A 147 ? ASP D 147 . ? 3_565 ? 7 AC1 8 THR A 148 ? THR D 148 . ? 3_565 ? 8 AC1 8 HOH G . ? HOH D 208 . ? 1_555 ? 9 AC2 9 GLY A 89 ? GLY D 89 . ? 1_555 ? 10 AC2 9 VAL A 90 ? VAL D 90 . ? 1_555 ? 11 AC2 9 SER A 91 ? SER D 91 . ? 1_555 ? 12 AC2 9 GLY A 93 ? GLY D 93 . ? 1_555 ? 13 AC2 9 THR A 94 ? THR D 94 . ? 1_555 ? 14 AC2 9 ASP A 95 ? ASP D 95 . ? 1_555 ? 15 AC2 9 ARG A 96 ? ARG D 96 . ? 1_555 ? 16 AC2 9 ARG A 133 ? ARG D 133 . ? 1_555 ? 17 AC2 9 HOH G . ? HOH D 177 . ? 1_555 ? 18 AC3 1 ARG A 170 ? ARG D 170 . ? 1_555 ? # _database_PDB_matrix.entry_id 3ERE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3ERE _atom_sites.fract_transf_matrix[1][1] 0.010624 _atom_sites.fract_transf_matrix[1][2] 0.006134 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012267 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006802 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? D . n A 1 2 SER 2 2 ? ? ? D . n A 1 3 ARG 3 3 ? ? ? D . n A 1 4 ALA 4 4 ? ? ? D . n A 1 5 LYS 5 5 ? ? ? D . n A 1 6 ALA 6 6 ? ? ? D . n A 1 7 ALA 7 7 ? ? ? D . n A 1 8 PRO 8 8 ? ? ? D . n A 1 9 VAL 9 9 ? ? ? D . n A 1 10 ALA 10 10 ? ? ? D . n A 1 11 GLY 11 11 ? ? ? D . n A 1 12 PRO 12 12 ? ? ? D . n A 1 13 GLU 13 13 ? ? ? D . n A 1 14 VAL 14 14 ? ? ? D . n A 1 15 ALA 15 15 15 ALA ALA D . n A 1 16 ALA 16 16 16 ALA ALA D . n A 1 17 ASN 17 17 17 ASN ASN D . n A 1 18 ARG 18 18 18 ARG ARG D . n A 1 19 ALA 19 19 19 ALA ALA D . n A 1 20 GLY 20 20 20 GLY GLY D . n A 1 21 ARG 21 21 21 ARG ARG D . n A 1 22 GLN 22 22 22 GLN GLN D . n A 1 23 ALA 23 23 23 ALA ALA D . n A 1 24 ARG 24 24 24 ARG ARG D . n A 1 25 ILE 25 25 25 ILE ILE D . n A 1 26 VAL 26 26 26 VAL VAL D . n A 1 27 ALA 27 27 27 ALA ALA D . n A 1 28 ILE 28 28 28 ILE ILE D . n A 1 29 LEU 29 29 29 LEU LEU D . n A 1 30 SER 30 30 30 SER SER D . n A 1 31 SER 31 31 31 SER SER D . n A 1 32 ALA 32 32 32 ALA ALA D . n A 1 33 GLN 33 33 33 GLN GLN D . n A 1 34 VAL 34 34 34 VAL VAL D . n A 1 35 ARG 35 35 35 ARG ARG D . n A 1 36 SER 36 36 36 SER SER D . n A 1 37 GLN 37 37 37 GLN GLN D . n A 1 38 ASN 38 38 38 ASN ASN D . n A 1 39 GLU 39 39 39 GLU GLU D . n A 1 40 LEU 40 40 40 LEU LEU D . n A 1 41 ALA 41 41 41 ALA ALA D . n A 1 42 ALA 42 42 42 ALA ALA D . n A 1 43 LEU 43 43 43 LEU LEU D . n A 1 44 LEU 44 44 44 LEU LEU D . n A 1 45 ALA 45 45 45 ALA ALA D . n A 1 46 ALA 46 46 46 ALA ALA D . n A 1 47 GLU 47 47 47 GLU GLU D . n A 1 48 GLY 48 48 48 GLY GLY D . n A 1 49 ILE 49 49 49 ILE ILE D . n A 1 50 GLU 50 50 50 GLU GLU D . n A 1 51 VAL 51 51 51 VAL VAL D . n A 1 52 THR 52 52 52 THR THR D . n A 1 53 GLN 53 53 53 GLN GLN D . n A 1 54 ALA 54 54 54 ALA ALA D . n A 1 55 THR 55 55 55 THR THR D . n A 1 56 LEU 56 56 56 LEU LEU D . n A 1 57 SER 57 57 57 SER SER D . n A 1 58 ARG 58 58 58 ARG ARG D . n A 1 59 ASP 59 59 59 ASP ASP D . n A 1 60 LEU 60 60 60 LEU LEU D . n A 1 61 GLU 61 61 61 GLU GLU D . n A 1 62 GLU 62 62 62 GLU GLU D . n A 1 63 LEU 63 63 63 LEU LEU D . n A 1 64 GLY 64 64 64 GLY GLY D . n A 1 65 ALA 65 65 65 ALA ALA D . n A 1 66 VAL 66 66 66 VAL VAL D . n A 1 67 LYS 67 67 67 LYS LYS D . n A 1 68 LEU 68 68 68 LEU LEU D . n A 1 69 ARG 69 69 69 ARG ARG D . n A 1 70 GLY 70 70 70 GLY GLY D . n A 1 71 ALA 71 71 71 ALA ALA D . n A 1 72 ASP 72 72 72 ASP ASP D . n A 1 73 GLY 73 73 73 GLY GLY D . n A 1 74 GLY 74 74 74 GLY GLY D . n A 1 75 THR 75 75 75 THR THR D . n A 1 76 GLY 76 76 76 GLY GLY D . n A 1 77 ILE 77 77 77 ILE ILE D . n A 1 78 TYR 78 78 78 TYR TYR D . n A 1 79 VAL 79 79 79 VAL VAL D . n A 1 80 VAL 80 80 80 VAL VAL D . n A 1 81 PRO 81 81 81 PRO PRO D . n A 1 82 GLU 82 82 82 GLU GLU D . n A 1 83 ASP 83 83 83 ASP ASP D . n A 1 84 GLY 84 84 84 GLY GLY D . n A 1 85 SER 85 85 85 SER SER D . n A 1 86 PRO 86 86 86 PRO PRO D . n A 1 87 VAL 87 87 87 VAL VAL D . n A 1 88 ARG 88 88 88 ARG ARG D . n A 1 89 GLY 89 89 89 GLY GLY D . n A 1 90 VAL 90 90 90 VAL VAL D . n A 1 91 SER 91 91 91 SER SER D . n A 1 92 GLY 92 92 92 GLY GLY D . n A 1 93 GLY 93 93 93 GLY GLY D . n A 1 94 THR 94 94 94 THR THR D . n A 1 95 ASP 95 95 95 ASP ASP D . n A 1 96 ARG 96 96 96 ARG ARG D . n A 1 97 MET 97 97 97 MET MET D . n A 1 98 ALA 98 98 98 ALA ALA D . n A 1 99 ARG 99 99 99 ARG ARG D . n A 1 100 LEU 100 100 100 LEU LEU D . n A 1 101 LEU 101 101 101 LEU LEU D . n A 1 102 GLY 102 102 102 GLY GLY D . n A 1 103 GLU 103 103 103 GLU GLU D . n A 1 104 LEU 104 104 104 LEU LEU D . n A 1 105 LEU 105 105 105 LEU LEU D . n A 1 106 VAL 106 106 106 VAL VAL D . n A 1 107 SER 107 107 107 SER SER D . n A 1 108 THR 108 108 108 THR THR D . n A 1 109 ASP 109 109 109 ASP ASP D . n A 1 110 ASP 110 110 110 ASP ASP D . n A 1 111 SER 111 111 111 SER SER D . n A 1 112 GLY 112 112 112 GLY GLY D . n A 1 113 ASN 113 113 113 ASN ASN D . n A 1 114 LEU 114 114 114 LEU LEU D . n A 1 115 ALA 115 115 115 ALA ALA D . n A 1 116 VAL 116 116 116 VAL VAL D . n A 1 117 LEU 117 117 117 LEU LEU D . n A 1 118 ARG 118 118 118 ARG ARG D . n A 1 119 THR 119 119 119 THR THR D . n A 1 120 PRO 120 120 120 PRO PRO D . n A 1 121 PRO 121 121 121 PRO PRO D . n A 1 122 GLY 122 122 122 GLY GLY D . n A 1 123 ALA 123 123 123 ALA ALA D . n A 1 124 ALA 124 124 124 ALA ALA D . n A 1 125 HIS 125 125 125 HIS HIS D . n A 1 126 TYR 126 126 126 TYR TYR D . n A 1 127 LEU 127 127 127 LEU LEU D . n A 1 128 ALA 128 128 128 ALA ALA D . n A 1 129 SER 129 129 129 SER SER D . n A 1 130 ALA 130 130 130 ALA ALA D . n A 1 131 ILE 131 131 131 ILE ILE D . n A 1 132 ASP 132 132 132 ASP ASP D . n A 1 133 ARG 133 133 133 ARG ARG D . n A 1 134 ALA 134 134 134 ALA ALA D . n A 1 135 ALA 135 135 135 ALA ALA D . n A 1 136 LEU 136 136 136 LEU LEU D . n A 1 137 PRO 137 137 137 PRO PRO D . n A 1 138 GLN 138 138 138 GLN GLN D . n A 1 139 VAL 139 139 139 VAL VAL D . n A 1 140 VAL 140 140 140 VAL VAL D . n A 1 141 GLY 141 141 141 GLY GLY D . n A 1 142 THR 142 142 142 THR THR D . n A 1 143 ILE 143 143 143 ILE ILE D . n A 1 144 ALA 144 144 144 ALA ALA D . n A 1 145 GLY 145 145 145 GLY GLY D . n A 1 146 ASP 146 146 146 ASP ASP D . n A 1 147 ASP 147 147 147 ASP ASP D . n A 1 148 THR 148 148 148 THR THR D . n A 1 149 ILE 149 149 149 ILE ILE D . n A 1 150 LEU 150 150 150 LEU LEU D . n A 1 151 VAL 151 151 151 VAL VAL D . n A 1 152 VAL 152 152 152 VAL VAL D . n A 1 153 ALA 153 153 153 ALA ALA D . n A 1 154 ARG 154 154 154 ARG ARG D . n A 1 155 GLU 155 155 155 GLU GLU D . n A 1 156 PRO 156 156 156 PRO PRO D . n A 1 157 THR 157 157 157 THR THR D . n A 1 158 THR 158 158 158 THR THR D . n A 1 159 GLY 159 159 159 GLY GLY D . n A 1 160 ALA 160 160 160 ALA ALA D . n A 1 161 GLN 161 161 161 GLN GLN D . n A 1 162 LEU 162 162 162 LEU LEU D . n A 1 163 ALA 163 163 163 ALA ALA D . n A 1 164 GLY 164 164 164 GLY GLY D . n A 1 165 MET 165 165 165 MET MET D . n A 1 166 PHE 166 166 166 PHE PHE D . n A 1 167 GLU 167 167 167 GLU GLU D . n A 1 168 ASN 168 168 168 ASN ASN D . n A 1 169 LEU 169 169 169 LEU LEU D . n A 1 170 ARG 170 170 170 ARG ARG D . n B 2 1 DT 1 1 1 DT THY A . n B 2 2 DT 2 2 2 DT THY A . n B 2 3 DG 3 3 3 DG GUA A . n B 2 4 DC 4 4 4 DC CYT A . n B 2 5 DA 5 5 5 DA ADE A . n B 2 6 DT 6 6 6 DT THY A . n B 2 7 DA 7 7 7 DA ADE A . n B 2 8 DA 8 8 8 DA ADE A . n B 2 9 DC 9 9 9 DC CYT A . n B 2 10 DG 10 10 10 DG GUA A . n B 2 11 DA 11 11 11 DA ADE A . n B 2 12 DT 12 12 12 DT THY A . n B 2 13 DG 13 13 13 DG GUA A . n B 2 14 DC 14 14 14 DC CYT A . n B 2 15 DA 15 15 15 DA ADE A . n B 2 16 DA 16 16 16 DA ADE A . n C 3 1 DT 1 1 1 DT THY B . n C 3 2 DT 2 2 2 DT THY B . n C 3 3 DG 3 3 3 DG GUA B . n C 3 4 DC 4 4 4 DC CYT B . n C 3 5 DA 5 5 5 DA ADE B . n C 3 6 DT 6 6 6 DT THY B . n C 3 7 DC 7 7 7 DC CYT B . n C 3 8 DG 8 8 8 DG GUA B . n C 3 9 DT 9 9 9 DT THY B . n C 3 10 DT 10 10 10 DT THY B . n C 3 11 DA 11 11 11 DA ADE B . n C 3 12 DT 12 12 12 DT THY B . n C 3 13 DG 13 13 13 DG GUA B . n C 3 14 DC 14 14 14 DC CYT B . n C 3 15 DA 15 15 15 DA ADE B . n C 3 16 DA 16 16 16 DA ADE B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'TB Structural Genomics Consortium' _pdbx_SG_project.initial_of_center TBSGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 1 171 1 SO4 SO4 D . E 4 SO4 1 172 2 SO4 SO4 D . F 4 SO4 1 173 3 SO4 SO4 D . G 5 HOH 1 174 1 HOH HOH D . G 5 HOH 2 175 2 HOH HOH D . G 5 HOH 3 176 3 HOH HOH D . G 5 HOH 4 177 4 HOH HOH D . G 5 HOH 5 178 6 HOH HOH D . G 5 HOH 6 179 8 HOH HOH D . G 5 HOH 7 180 9 HOH HOH D . G 5 HOH 8 181 10 HOH HOH D . G 5 HOH 9 182 11 HOH HOH D . G 5 HOH 10 183 12 HOH HOH D . G 5 HOH 11 184 14 HOH HOH D . G 5 HOH 12 185 16 HOH HOH D . G 5 HOH 13 186 17 HOH HOH D . G 5 HOH 14 187 19 HOH HOH D . G 5 HOH 15 188 20 HOH HOH D . G 5 HOH 16 189 21 HOH HOH D . G 5 HOH 17 190 22 HOH HOH D . G 5 HOH 18 191 23 HOH HOH D . G 5 HOH 19 192 24 HOH HOH D . G 5 HOH 20 193 25 HOH HOH D . G 5 HOH 21 194 26 HOH HOH D . G 5 HOH 22 195 27 HOH HOH D . G 5 HOH 23 196 28 HOH HOH D . G 5 HOH 24 197 29 HOH HOH D . G 5 HOH 25 198 30 HOH HOH D . G 5 HOH 26 199 31 HOH HOH D . G 5 HOH 27 200 32 HOH HOH D . G 5 HOH 28 201 33 HOH HOH D . G 5 HOH 29 202 34 HOH HOH D . G 5 HOH 30 203 35 HOH HOH D . G 5 HOH 31 204 36 HOH HOH D . G 5 HOH 32 205 37 HOH HOH D . G 5 HOH 33 206 38 HOH HOH D . G 5 HOH 34 207 39 HOH HOH D . G 5 HOH 35 208 41 HOH HOH D . G 5 HOH 36 209 42 HOH HOH D . G 5 HOH 37 210 43 HOH HOH D . G 5 HOH 38 211 44 HOH HOH D . G 5 HOH 39 212 45 HOH HOH D . G 5 HOH 40 213 46 HOH HOH D . G 5 HOH 41 214 47 HOH HOH D . G 5 HOH 42 215 48 HOH HOH D . G 5 HOH 43 216 49 HOH HOH D . G 5 HOH 44 217 50 HOH HOH D . G 5 HOH 45 218 51 HOH HOH D . G 5 HOH 46 219 52 HOH HOH D . G 5 HOH 47 220 53 HOH HOH D . G 5 HOH 48 221 54 HOH HOH D . G 5 HOH 49 222 55 HOH HOH D . G 5 HOH 50 223 56 HOH HOH D . G 5 HOH 51 224 57 HOH HOH D . G 5 HOH 52 225 58 HOH HOH D . G 5 HOH 53 226 59 HOH HOH D . G 5 HOH 54 227 60 HOH HOH D . G 5 HOH 55 228 62 HOH HOH D . G 5 HOH 56 229 63 HOH HOH D . G 5 HOH 57 230 65 HOH HOH D . G 5 HOH 58 231 66 HOH HOH D . G 5 HOH 59 232 67 HOH HOH D . G 5 HOH 60 233 68 HOH HOH D . G 5 HOH 61 234 69 HOH HOH D . G 5 HOH 62 235 70 HOH HOH D . G 5 HOH 63 236 71 HOH HOH D . G 5 HOH 64 237 72 HOH HOH D . G 5 HOH 65 238 73 HOH HOH D . G 5 HOH 66 239 74 HOH HOH D . G 5 HOH 67 240 75 HOH HOH D . G 5 HOH 68 241 76 HOH HOH D . G 5 HOH 69 242 77 HOH HOH D . G 5 HOH 70 243 79 HOH HOH D . G 5 HOH 71 244 84 HOH HOH D . G 5 HOH 72 245 86 HOH HOH D . G 5 HOH 73 246 87 HOH HOH D . G 5 HOH 74 247 88 HOH HOH D . G 5 HOH 75 248 90 HOH HOH D . G 5 HOH 76 249 91 HOH HOH D . G 5 HOH 77 250 92 HOH HOH D . G 5 HOH 78 251 93 HOH HOH D . G 5 HOH 79 252 89 HOH HOH D . H 5 HOH 1 17 7 HOH HOH A . H 5 HOH 2 18 13 HOH HOH A . H 5 HOH 3 19 15 HOH HOH A . H 5 HOH 4 20 61 HOH HOH A . H 5 HOH 5 21 81 HOH HOH A . H 5 HOH 6 22 82 HOH HOH A . I 5 HOH 1 17 5 HOH HOH B . I 5 HOH 2 18 18 HOH HOH B . I 5 HOH 3 19 40 HOH HOH B . I 5 HOH 4 20 64 HOH HOH B . I 5 HOH 5 21 78 HOH HOH B . I 5 HOH 6 22 80 HOH HOH B . I 5 HOH 7 23 83 HOH HOH B . I 5 HOH 8 24 85 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA hexameric 6 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7860 ? 1 MORE -43.7 ? 1 'SSA (A^2)' 23200 ? 2 'ABSA (A^2)' 2840 ? 2 MORE -15.5 ? 2 'SSA (A^2)' 12690 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 9_555 -x,-x+y,-z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id D _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 240 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-10-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU D 62 ? ? -69.96 16.09 2 1 PRO D 81 ? ? -57.02 49.53 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D MET 1 ? A MET 1 2 1 Y 1 D SER 2 ? A SER 2 3 1 Y 1 D ARG 3 ? A ARG 3 4 1 Y 1 D ALA 4 ? A ALA 4 5 1 Y 1 D LYS 5 ? A LYS 5 6 1 Y 1 D ALA 6 ? A ALA 6 7 1 Y 1 D ALA 7 ? A ALA 7 8 1 Y 1 D PRO 8 ? A PRO 8 9 1 Y 1 D VAL 9 ? A VAL 9 10 1 Y 1 D ALA 10 ? A ALA 10 11 1 Y 1 D GLY 11 ? A GLY 11 12 1 Y 1 D PRO 12 ? A PRO 12 13 1 Y 1 D GLU 13 ? A GLU 13 14 1 Y 1 D VAL 14 ? A VAL 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 SO4 S S N N 433 SO4 O1 O N N 434 SO4 O2 O N N 435 SO4 O3 O N N 436 SO4 O4 O N N 437 THR N N N N 438 THR CA C N S 439 THR C C N N 440 THR O O N N 441 THR CB C N R 442 THR OG1 O N N 443 THR CG2 C N N 444 THR OXT O N N 445 THR H H N N 446 THR H2 H N N 447 THR HA H N N 448 THR HB H N N 449 THR HG1 H N N 450 THR HG21 H N N 451 THR HG22 H N N 452 THR HG23 H N N 453 THR HXT H N N 454 TYR N N N N 455 TYR CA C N S 456 TYR C C N N 457 TYR O O N N 458 TYR CB C N N 459 TYR CG C Y N 460 TYR CD1 C Y N 461 TYR CD2 C Y N 462 TYR CE1 C Y N 463 TYR CE2 C Y N 464 TYR CZ C Y N 465 TYR OH O N N 466 TYR OXT O N N 467 TYR H H N N 468 TYR H2 H N N 469 TYR HA H N N 470 TYR HB2 H N N 471 TYR HB3 H N N 472 TYR HD1 H N N 473 TYR HD2 H N N 474 TYR HE1 H N N 475 TYR HE2 H N N 476 TYR HH H N N 477 TYR HXT H N N 478 VAL N N N N 479 VAL CA C N S 480 VAL C C N N 481 VAL O O N N 482 VAL CB C N N 483 VAL CG1 C N N 484 VAL CG2 C N N 485 VAL OXT O N N 486 VAL H H N N 487 VAL H2 H N N 488 VAL HA H N N 489 VAL HB H N N 490 VAL HG11 H N N 491 VAL HG12 H N N 492 VAL HG13 H N N 493 VAL HG21 H N N 494 VAL HG22 H N N 495 VAL HG23 H N N 496 VAL HXT H N N 497 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 SO4 S O1 doub N N 426 SO4 S O2 doub N N 427 SO4 S O3 sing N N 428 SO4 S O4 sing N N 429 THR N CA sing N N 430 THR N H sing N N 431 THR N H2 sing N N 432 THR CA C sing N N 433 THR CA CB sing N N 434 THR CA HA sing N N 435 THR C O doub N N 436 THR C OXT sing N N 437 THR CB OG1 sing N N 438 THR CB CG2 sing N N 439 THR CB HB sing N N 440 THR OG1 HG1 sing N N 441 THR CG2 HG21 sing N N 442 THR CG2 HG22 sing N N 443 THR CG2 HG23 sing N N 444 THR OXT HXT sing N N 445 TYR N CA sing N N 446 TYR N H sing N N 447 TYR N H2 sing N N 448 TYR CA C sing N N 449 TYR CA CB sing N N 450 TYR CA HA sing N N 451 TYR C O doub N N 452 TYR C OXT sing N N 453 TYR CB CG sing N N 454 TYR CB HB2 sing N N 455 TYR CB HB3 sing N N 456 TYR CG CD1 doub Y N 457 TYR CG CD2 sing Y N 458 TYR CD1 CE1 sing Y N 459 TYR CD1 HD1 sing N N 460 TYR CD2 CE2 doub Y N 461 TYR CD2 HD2 sing N N 462 TYR CE1 CZ doub Y N 463 TYR CE1 HE1 sing N N 464 TYR CE2 CZ sing Y N 465 TYR CE2 HE2 sing N N 466 TYR CZ OH sing N N 467 TYR OH HH sing N N 468 TYR OXT HXT sing N N 469 VAL N CA sing N N 470 VAL N H sing N N 471 VAL N H2 sing N N 472 VAL CA C sing N N 473 VAL CA CB sing N N 474 VAL CA HA sing N N 475 VAL C O doub N N 476 VAL C OXT sing N N 477 VAL CB CG1 sing N N 478 VAL CB CG2 sing N N 479 VAL CB HB sing N N 480 VAL CG1 HG11 sing N N 481 VAL CG1 HG12 sing N N 482 VAL CG1 HG13 sing N N 483 VAL CG2 HG21 sing N N 484 VAL CG2 HG22 sing N N 485 VAL CG2 HG23 sing N N 486 VAL OXT HXT sing N N 487 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3ERE 'double helix' 3ERE 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 C DA 16 1_555 -0.236 -0.121 0.682 -6.194 -0.652 -2.382 1 A_DT1:DA16_B A 1 ? B 16 ? 20 1 1 B DT 2 1_555 C DA 15 1_555 -0.021 -0.001 0.170 -3.558 -11.428 -5.333 2 A_DT2:DA15_B A 2 ? B 15 ? 20 1 1 B DG 3 1_555 C DC 14 1_555 -0.301 0.091 0.022 -0.261 -7.868 -3.896 3 A_DG3:DC14_B A 3 ? B 14 ? 19 1 1 B DC 4 1_555 C DG 13 1_555 0.196 0.023 0.195 -0.421 -15.561 -0.869 4 A_DC4:DG13_B A 4 ? B 13 ? 19 1 1 B DA 5 1_555 C DT 12 1_555 -0.248 -0.262 -0.442 -7.034 -6.385 8.311 5 A_DA5:DT12_B A 5 ? B 12 ? 20 1 1 B DT 6 1_555 C DA 11 1_555 -0.009 -0.269 -0.175 14.386 -4.639 2.815 6 A_DT6:DA11_B A 6 ? B 11 ? 20 1 1 B DA 7 1_555 C DT 10 1_555 -0.656 -0.043 0.240 5.623 -14.491 -0.082 7 A_DA7:DT10_B A 7 ? B 10 ? 20 1 1 B DA 8 1_555 C DT 9 1_555 0.028 0.224 0.615 10.086 -12.939 1.661 8 A_DA8:DT9_B A 8 ? B 9 ? 20 1 1 B DC 9 1_555 C DG 8 1_555 0.643 -0.289 0.212 0.734 -7.263 1.707 9 A_DC9:DG8_B A 9 ? B 8 ? 19 1 1 B DG 10 1_555 C DC 7 1_555 0.668 0.246 0.057 -2.384 -7.416 2.051 10 A_DG10:DC7_B A 10 ? B 7 ? 19 1 1 B DA 11 1_555 C DT 6 1_555 -0.197 -0.002 0.137 -2.308 -11.276 4.976 11 A_DA11:DT6_B A 11 ? B 6 ? 20 1 1 B DT 12 1_555 C DA 5 1_555 -0.373 0.450 -0.319 1.594 -17.376 1.793 12 A_DT12:DA5_B A 12 ? B 5 ? ? ? 1 B DG 13 1_555 C DC 4 1_555 -0.193 -0.396 0.047 -1.369 -8.421 -0.690 13 A_DG13:DC4_B A 13 ? B 4 ? 19 1 1 B DC 14 1_555 C DG 3 1_555 0.422 -0.295 0.254 1.563 -6.128 -1.443 14 A_DC14:DG3_B A 14 ? B 3 ? 19 1 1 B DA 15 1_555 C DT 2 1_555 -0.173 -0.350 0.260 -0.397 -3.606 -1.800 15 A_DA15:DT2_B A 15 ? B 2 ? 20 1 1 B DA 16 1_555 C DT 1 1_555 0.114 -0.291 0.572 3.070 -5.049 -4.317 16 A_DA16:DT1_B A 16 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 C DA 16 1_555 B DT 2 1_555 C DA 15 1_555 -0.164 -0.643 3.089 4.281 4.379 31.963 -1.858 0.987 2.931 7.862 -7.686 32.530 1 AA_DT1DT2:DA15DA16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 B DT 2 1_555 C DA 15 1_555 B DG 3 1_555 C DC 14 1_555 -0.354 0.109 3.281 -0.292 4.285 33.342 -0.517 0.564 3.272 7.430 0.506 33.610 2 AA_DT2DG3:DC14DA15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 B DG 3 1_555 C DC 14 1_555 B DC 4 1_555 C DG 13 1_555 -0.239 -0.337 3.240 -1.283 4.167 34.972 -1.167 0.207 3.186 6.900 2.125 35.234 3 AA_DG3DC4:DG13DC14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 B DC 4 1_555 C DG 13 1_555 B DA 5 1_555 C DT 12 1_555 1.403 1.200 3.489 7.033 3.778 39.102 1.271 -1.147 3.771 5.574 -10.376 39.877 4 AA_DC4DA5:DT12DG13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 B DA 5 1_555 C DT 12 1_555 B DT 6 1_555 C DA 11 1_555 0.273 -0.072 2.781 -1.800 0.671 28.014 -0.282 -0.922 2.756 1.383 3.713 28.079 5 AA_DA5DT6:DA11DT12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 B DT 6 1_555 C DA 11 1_555 B DA 7 1_555 C DT 10 1_555 0.095 0.268 3.537 -0.555 -3.331 38.670 0.841 -0.216 3.501 -5.019 0.836 38.812 6 AA_DT6DA7:DT10DA11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 B DA 7 1_555 C DT 10 1_555 B DA 8 1_555 C DT 9 1_555 0.055 -0.261 3.100 -0.202 -6.052 41.317 0.241 -0.098 3.106 -8.522 0.284 41.739 7 AA_DA7DA8:DT9DT10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 B DA 8 1_555 C DT 9 1_555 B DC 9 1_555 C DG 8 1_555 0.751 -0.991 3.542 3.987 0.919 35.606 -1.755 -0.597 3.577 1.496 -6.494 35.833 8 AA_DA8DC9:DG8DT9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 B DC 9 1_555 C DG 8 1_555 B DG 10 1_555 C DC 7 1_555 -0.185 0.369 3.425 0.034 -0.901 37.751 0.691 0.290 3.415 -1.392 -0.053 37.762 9 AA_DC9DG10:DC7DG8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 B DG 10 1_555 C DC 7 1_555 B DA 11 1_555 C DT 6 1_555 0.038 -0.404 3.328 0.722 -2.508 33.618 -0.280 0.055 3.348 -4.328 -1.245 33.716 10 AA_DG10DA11:DT6DC7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 B DA 11 1_555 C DT 6 1_555 B DT 12 1_555 C DA 5 1_555 -0.134 -0.244 3.095 3.668 1.616 34.915 -0.631 0.739 3.051 2.683 -6.089 35.138 11 AA_DA11DT12:DA5DT6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 B DT 12 1_555 C DA 5 1_555 B DG 13 1_555 C DC 4 1_555 -0.368 0.329 3.516 -4.278 6.924 35.169 -0.540 -0.068 3.534 11.273 6.965 36.069 12 AA_DT12DG13:DC4DA5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 B DG 13 1_555 C DC 4 1_555 B DC 14 1_555 C DG 3 1_555 0.223 -0.131 3.415 -0.077 -3.856 38.345 0.300 -0.347 3.411 -5.852 0.116 38.531 13 AA_DG13DC14:DG3DC4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 B DC 14 1_555 C DG 3 1_555 B DA 15 1_555 C DT 2 1_555 -0.001 -0.226 3.258 -0.650 6.404 33.387 -1.401 -0.102 3.161 11.020 1.118 33.984 14 AA_DC14DA15:DT2DG3_BB A 14 ? B 3 ? A 15 ? B 2 ? 1 B DA 15 1_555 C DT 2 1_555 B DA 16 1_555 C DT 1 1_555 0.020 -0.235 3.508 0.294 -8.740 37.699 0.808 0.008 3.475 -13.307 -0.448 38.664 15 AA_DA15DA16:DT1DT2_BB A 15 ? B 2 ? A 16 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 2FZF 'PDB entries 2FZF, 1B4A' 2 ? 'experimental model' PDB 1B4A 'PDB entries 2FZF, 1B4A' #