data_3FZX # _entry.id 3FZX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FZX pdb_00003fzx 10.2210/pdb3fzx/pdb RCSB RCSB051247 ? ? WWPDB D_1000051247 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 393247 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3FZX _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of putative exported protein with YmcC-like fold (YP_211880.1) from Bacteroides fragilis NCTC 9343 at 2.22 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3FZX _cell.length_a 143.740 _cell.length_b 143.740 _cell.length_c 49.460 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FZX _symmetry.Int_Tables_number 181 _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative exported protein' 25200.281 1 ? ? 'UNP residues 20-236' ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 water nat water 18.015 66 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GAQNQDCAFFFPNQEGEQITRNCYTADGKLTNILVYRVDQAYEYPSG(MSE)EVVANYTFADAAGKTLNSGQ(MSE)VAR CSDGNFS(MSE)S(MSE)GDVATFPTALN(MSE)(MSE)NADVY(MSE)(MSE)GDL(MSE)NYPDAFSNP(MSE)NPGD DDEFDDGTLRLYQKGNKNNRAEISVFDREFVTTETVNTPAGAFYCTKVKYE(MSE)NIWTPKETIKGYGYEWYAPNIGIV RSEQYNNKKELQSYSVLERIKK ; _entity_poly.pdbx_seq_one_letter_code_can ;GAQNQDCAFFFPNQEGEQITRNCYTADGKLTNILVYRVDQAYEYPSGMEVVANYTFADAAGKTLNSGQMVARCSDGNFSM SMGDVATFPTALNMMNADVYMMGDLMNYPDAFSNPMNPGDDDEFDDGTLRLYQKGNKNNRAEISVFDREFVTTETVNTPA GAFYCTKVKYEMNIWTPKETIKGYGYEWYAPNIGIVRSEQYNNKKELQSYSVLERIKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 393247 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 GLN n 1 4 ASN n 1 5 GLN n 1 6 ASP n 1 7 CYS n 1 8 ALA n 1 9 PHE n 1 10 PHE n 1 11 PHE n 1 12 PRO n 1 13 ASN n 1 14 GLN n 1 15 GLU n 1 16 GLY n 1 17 GLU n 1 18 GLN n 1 19 ILE n 1 20 THR n 1 21 ARG n 1 22 ASN n 1 23 CYS n 1 24 TYR n 1 25 THR n 1 26 ALA n 1 27 ASP n 1 28 GLY n 1 29 LYS n 1 30 LEU n 1 31 THR n 1 32 ASN n 1 33 ILE n 1 34 LEU n 1 35 VAL n 1 36 TYR n 1 37 ARG n 1 38 VAL n 1 39 ASP n 1 40 GLN n 1 41 ALA n 1 42 TYR n 1 43 GLU n 1 44 TYR n 1 45 PRO n 1 46 SER n 1 47 GLY n 1 48 MSE n 1 49 GLU n 1 50 VAL n 1 51 VAL n 1 52 ALA n 1 53 ASN n 1 54 TYR n 1 55 THR n 1 56 PHE n 1 57 ALA n 1 58 ASP n 1 59 ALA n 1 60 ALA n 1 61 GLY n 1 62 LYS n 1 63 THR n 1 64 LEU n 1 65 ASN n 1 66 SER n 1 67 GLY n 1 68 GLN n 1 69 MSE n 1 70 VAL n 1 71 ALA n 1 72 ARG n 1 73 CYS n 1 74 SER n 1 75 ASP n 1 76 GLY n 1 77 ASN n 1 78 PHE n 1 79 SER n 1 80 MSE n 1 81 SER n 1 82 MSE n 1 83 GLY n 1 84 ASP n 1 85 VAL n 1 86 ALA n 1 87 THR n 1 88 PHE n 1 89 PRO n 1 90 THR n 1 91 ALA n 1 92 LEU n 1 93 ASN n 1 94 MSE n 1 95 MSE n 1 96 ASN n 1 97 ALA n 1 98 ASP n 1 99 VAL n 1 100 TYR n 1 101 MSE n 1 102 MSE n 1 103 GLY n 1 104 ASP n 1 105 LEU n 1 106 MSE n 1 107 ASN n 1 108 TYR n 1 109 PRO n 1 110 ASP n 1 111 ALA n 1 112 PHE n 1 113 SER n 1 114 ASN n 1 115 PRO n 1 116 MSE n 1 117 ASN n 1 118 PRO n 1 119 GLY n 1 120 ASP n 1 121 ASP n 1 122 ASP n 1 123 GLU n 1 124 PHE n 1 125 ASP n 1 126 ASP n 1 127 GLY n 1 128 THR n 1 129 LEU n 1 130 ARG n 1 131 LEU n 1 132 TYR n 1 133 GLN n 1 134 LYS n 1 135 GLY n 1 136 ASN n 1 137 LYS n 1 138 ASN n 1 139 ASN n 1 140 ARG n 1 141 ALA n 1 142 GLU n 1 143 ILE n 1 144 SER n 1 145 VAL n 1 146 PHE n 1 147 ASP n 1 148 ARG n 1 149 GLU n 1 150 PHE n 1 151 VAL n 1 152 THR n 1 153 THR n 1 154 GLU n 1 155 THR n 1 156 VAL n 1 157 ASN n 1 158 THR n 1 159 PRO n 1 160 ALA n 1 161 GLY n 1 162 ALA n 1 163 PHE n 1 164 TYR n 1 165 CYS n 1 166 THR n 1 167 LYS n 1 168 VAL n 1 169 LYS n 1 170 TYR n 1 171 GLU n 1 172 MSE n 1 173 ASN n 1 174 ILE n 1 175 TRP n 1 176 THR n 1 177 PRO n 1 178 LYS n 1 179 GLU n 1 180 THR n 1 181 ILE n 1 182 LYS n 1 183 GLY n 1 184 TYR n 1 185 GLY n 1 186 TYR n 1 187 GLU n 1 188 TRP n 1 189 TYR n 1 190 ALA n 1 191 PRO n 1 192 ASN n 1 193 ILE n 1 194 GLY n 1 195 ILE n 1 196 VAL n 1 197 ARG n 1 198 SER n 1 199 GLU n 1 200 GLN n 1 201 TYR n 1 202 ASN n 1 203 ASN n 1 204 LYS n 1 205 LYS n 1 206 GLU n 1 207 LEU n 1 208 GLN n 1 209 SER n 1 210 TYR n 1 211 SER n 1 212 VAL n 1 213 LEU n 1 214 GLU n 1 215 ARG n 1 216 ILE n 1 217 LYS n 1 218 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BF2257, YP_211880.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 25285 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LD59_BACFN _struct_ref.pdbx_db_accession Q5LD59 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AQNQDCAFFFPNQEGEQITRNCYTADGKLTNILVYRVDQAYEYPSGMEVVANYTFADAAGKTLNSGQMVARCSDGNFSMS MGDVATFPTALNMMNADVYMMGDLMNYPDAFSNPMNPGDDDEFDDGTLRLYQKGNKNNRAEISVFDREFVTTETVNTPAG AFYCTKVKYEMNIWTPKETIKGYGYEWYAPNIGIVRSEQYNNKKELQSYSVLERIKK ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FZX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 218 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LD59 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 236 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 236 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3FZX _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5LD59 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 19 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3FZX # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 0.20M Ca(OAc)2, 30.0% PEG 400, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-12-07 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97982 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97982' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3FZX _reflns.d_resolution_high 2.22 _reflns.d_resolution_low 29.074 _reflns.number_obs 15388 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 51.769 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.22 2.30 21744 ? 2842 0.012 1.9 ? ? ? ? ? 99.80 1 1 2.30 2.39 21327 ? 2778 0.012 2.3 ? ? ? ? ? 99.90 2 1 2.39 2.50 21975 ? 2855 0.012 3.1 ? ? ? ? ? 99.80 3 1 2.50 2.63 21674 ? 2808 0.012 4.4 ? ? ? ? ? 99.90 4 1 2.63 2.80 22402 ? 2900 0.012 7.0 ? ? ? ? ? 99.80 5 1 2.80 3.01 21156 ? 2733 0.012 10.8 ? ? ? ? ? 99.90 6 1 3.01 3.31 21940 ? 2833 0.012 18.8 ? ? ? ? ? 99.90 7 1 3.31 3.79 22019 ? 2853 0.012 30.8 ? ? ? ? ? 99.90 8 1 3.79 4.76 21481 ? 2799 0.012 42.6 ? ? ? ? ? 99.90 9 1 4.76 29.074 21970 ? 2884 0.012 49.0 ? ? ? ? ? 99.40 10 1 # _refine.entry_id 3FZX _refine.ls_d_res_high 2.220 _refine.ls_d_res_low 29.074 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.840 _refine.ls_number_reflns_obs 15373 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 4. CALCIUM IONS MODELED ARE PRESENT IN CRYSTALLIZATION CONDITIONS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_R_work 0.200 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.250 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 768 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.839 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.190 _refine.aniso_B[2][2] 1.190 _refine.aniso_B[3][3] -1.790 _refine.aniso_B[1][2] 0.600 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.220 _refine.pdbx_overall_ESU_R_Free 0.197 _refine.overall_SU_ML 0.130 _refine.overall_SU_B 11.510 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 89.01 _refine.B_iso_min 25.57 _refine.occupancy_max 1.00 _refine.occupancy_min 0.23 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1685 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 66 _refine_hist.number_atoms_total 1753 _refine_hist.d_res_high 2.220 _refine_hist.d_res_low 29.074 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1751 0.014 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1171 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2378 1.570 1.946 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2856 0.962 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 221 5.449 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 91 34.422 25.165 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 293 13.534 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 8 17.388 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 248 0.107 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2002 0.007 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 364 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1069 1.743 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 434 0.425 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1727 3.315 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 682 6.224 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 646 8.472 11.000 ? ? # _refine_ls_shell.d_res_high 2.220 _refine_ls_shell.d_res_low 2.277 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.820 _refine_ls_shell.number_reflns_R_work 1065 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.270 _refine_ls_shell.R_factor_R_free 0.321 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1115 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FZX _struct.title ;CRYSTAL STRUCTURE OF A PUTATIVE EXPORTED PROTEIN WITH YMCC-LIKE FOLD (BF2203) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.22 A RESOLUTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PUTATIVE EXPORTED PROTEIN WITH YMCC-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, LIPID BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.entry_id 3FZX # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 83 ? THR A 87 ? GLY A 101 THR A 105 5 ? 5 HELX_P HELX_P2 2 PHE A 88 ? MSE A 95 ? PHE A 106 MSE A 113 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 47 C ? ? ? 1_555 A MSE 48 N ? ? A GLY 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale2 covale both ? A MSE 48 C ? ? ? 1_555 A GLU 49 N ? ? A MSE 66 A GLU 67 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A GLN 68 C ? ? ? 1_555 A MSE 69 N ? ? A GLN 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? A MSE 69 C ? ? ? 1_555 A VAL 70 N ? ? A MSE 87 A VAL 88 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A SER 79 C ? ? ? 1_555 A MSE 80 N ? ? A SER 97 A MSE 98 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? A MSE 80 C ? ? ? 1_555 A SER 81 N ? ? A MSE 98 A SER 99 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A SER 81 C ? ? ? 1_555 A MSE 82 N ? ? A SER 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A MSE 82 C ? ? ? 1_555 A GLY 83 N ? ? A MSE 100 A GLY 101 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? A ASN 93 C ? ? ? 1_555 A MSE 94 N ? ? A ASN 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale10 covale both ? A MSE 94 C ? ? ? 1_555 A MSE 95 N ? ? A MSE 112 A MSE 113 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale11 covale both ? A MSE 95 C ? ? ? 1_555 A ASN 96 N ? ? A MSE 113 A ASN 114 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale12 covale both ? A TYR 100 C ? ? ? 1_555 A MSE 101 N ? ? A TYR 118 A MSE 119 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale13 covale both ? A MSE 101 C ? ? ? 1_555 A MSE 102 N ? ? A MSE 119 A MSE 120 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? A MSE 102 C ? ? ? 1_555 A GLY 103 N ? ? A MSE 120 A GLY 121 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale15 covale both ? A LEU 105 C ? ? ? 1_555 A MSE 106 N ? ? A LEU 123 A MSE 124 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale16 covale both ? A MSE 106 C ? ? ? 1_555 A ASN 107 N ? ? A MSE 124 A ASN 125 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale17 covale both ? A PRO 115 C ? ? ? 1_555 A MSE 116 N ? ? A PRO 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale18 covale both ? A MSE 116 C ? ? ? 1_555 A ASN 117 N ? ? A MSE 134 A ASN 135 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale19 covale both ? A GLU 171 C ? ? ? 1_555 A MSE 172 N ? ? A GLU 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? A MSE 172 C ? ? ? 1_555 A ASN 173 N ? ? A MSE 190 A ASN 191 1_555 ? ? ? ? ? ? ? 1.333 ? ? metalc1 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 3 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 14 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 121 OD1 ? ? A CA 1 A ASP 139 1_555 ? ? ? ? ? ? ? 2.617 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 121 OD2 ? ? A CA 1 A ASP 139 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 122 OD1 ? ? A CA 1 A ASP 140 1_555 ? ? ? ? ? ? ? 2.906 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 254 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 1 A HOH 285 1_555 ? ? ? ? ? ? ? 2.850 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 A GLY 119 O ? ? A CA 2 A GLY 137 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 A ASP 121 OD1 ? ? A CA 2 A ASP 139 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc10 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 2 A HOH 237 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc11 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 2 A HOH 286 1_555 ? ? ? ? ? ? ? 2.384 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 13 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel A 12 13 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 99 ? GLY A 103 ? VAL A 117 GLY A 121 A 2 GLY A 127 ? GLN A 133 ? GLY A 145 GLN A 151 A 3 ASN A 136 ? THR A 158 ? ASN A 154 THR A 176 A 4 GLY A 161 ? TRP A 175 ? GLY A 179 TRP A 193 A 5 THR A 180 ? ALA A 190 ? THR A 198 ALA A 208 A 6 GLY A 194 ? ASN A 202 ? GLY A 212 ASN A 220 A 7 LEU A 207 ? LYS A 217 ? LEU A 225 LYS A 235 A 8 GLN A 18 ? THR A 25 ? GLN A 36 THR A 43 A 9 LEU A 30 ? TYR A 44 ? LEU A 48 TYR A 62 A 10 GLY A 47 ? ASP A 58 ? GLY A 65 ASP A 76 A 11 THR A 63 ? SER A 74 ? THR A 81 SER A 92 A 12 ASN A 77 ? SER A 81 ? ASN A 95 SER A 99 A 13 LEU A 105 ? ASN A 107 ? LEU A 123 ASN A 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 100 ? N TYR A 118 O TYR A 132 ? O TYR A 150 A 2 3 N LEU A 129 ? N LEU A 147 O ILE A 143 ? O ILE A 161 A 3 4 N THR A 152 ? N THR A 170 O LYS A 167 ? O LYS A 185 A 4 5 N VAL A 168 ? N VAL A 186 O GLU A 187 ? O GLU A 205 A 5 6 N TYR A 184 ? N TYR A 202 O TYR A 201 ? O TYR A 219 A 6 7 N GLN A 200 ? N GLN A 218 O GLN A 208 ? O GLN A 226 A 7 8 O TYR A 210 ? O TYR A 228 N TYR A 24 ? N TYR A 42 A 8 9 N ARG A 21 ? N ARG A 39 O LEU A 34 ? O LEU A 52 A 9 10 N TYR A 42 ? N TYR A 60 O GLU A 49 ? O GLU A 67 A 10 11 N PHE A 56 ? N PHE A 74 O LEU A 64 ? O LEU A 82 A 11 12 N ARG A 72 ? N ARG A 90 O SER A 79 ? O SER A 97 A 12 13 N MSE A 80 ? N MSE A 98 O MSE A 106 ? O MSE A 124 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 1 ? 7 'BINDING SITE FOR RESIDUE CA A 1' AC2 Software A CA 2 ? 6 'BINDING SITE FOR RESIDUE CA A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH D . ? HOH A 3 . ? 1_555 ? 2 AC1 7 HOH D . ? HOH A 14 . ? 1_555 ? 3 AC1 7 ASP A 121 ? ASP A 139 . ? 1_555 ? 4 AC1 7 ASP A 122 ? ASP A 140 . ? 1_555 ? 5 AC1 7 ASP A 147 ? ASP A 165 . ? 11_655 ? 6 AC1 7 HOH D . ? HOH A 254 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 285 . ? 1_555 ? 8 AC2 6 HOH D . ? HOH A 15 . ? 11_655 ? 9 AC2 6 GLY A 119 ? GLY A 137 . ? 1_555 ? 10 AC2 6 ASP A 121 ? ASP A 139 . ? 1_555 ? 11 AC2 6 ASP A 147 ? ASP A 165 . ? 11_655 ? 12 AC2 6 HOH D . ? HOH A 237 . ? 1_555 ? 13 AC2 6 HOH D . ? HOH A 286 . ? 1_555 ? # _atom_sites.entry_id 3FZX _atom_sites.fract_transf_matrix[1][1] 0.006957 _atom_sites.fract_transf_matrix[1][2] 0.004017 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008033 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020218 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 19 ? ? ? A . n A 1 2 ALA 2 20 ? ? ? A . n A 1 3 GLN 3 21 ? ? ? A . n A 1 4 ASN 4 22 ? ? ? A . n A 1 5 GLN 5 23 ? ? ? A . n A 1 6 ASP 6 24 ? ? ? A . n A 1 7 CYS 7 25 25 CYS CYS A . n A 1 8 ALA 8 26 26 ALA ALA A . n A 1 9 PHE 9 27 27 PHE PHE A . n A 1 10 PHE 10 28 28 PHE PHE A . n A 1 11 PHE 11 29 29 PHE PHE A . n A 1 12 PRO 12 30 30 PRO PRO A . n A 1 13 ASN 13 31 31 ASN ASN A . n A 1 14 GLN 14 32 32 GLN GLN A . n A 1 15 GLU 15 33 33 GLU GLU A . n A 1 16 GLY 16 34 34 GLY GLY A . n A 1 17 GLU 17 35 35 GLU GLU A . n A 1 18 GLN 18 36 36 GLN GLN A . n A 1 19 ILE 19 37 37 ILE ILE A . n A 1 20 THR 20 38 38 THR THR A . n A 1 21 ARG 21 39 39 ARG ARG A . n A 1 22 ASN 22 40 40 ASN ASN A . n A 1 23 CYS 23 41 41 CYS CYS A . n A 1 24 TYR 24 42 42 TYR TYR A . n A 1 25 THR 25 43 43 THR THR A . n A 1 26 ALA 26 44 44 ALA ALA A . n A 1 27 ASP 27 45 45 ASP ASP A . n A 1 28 GLY 28 46 46 GLY GLY A . n A 1 29 LYS 29 47 47 LYS LYS A . n A 1 30 LEU 30 48 48 LEU LEU A . n A 1 31 THR 31 49 49 THR THR A . n A 1 32 ASN 32 50 50 ASN ASN A . n A 1 33 ILE 33 51 51 ILE ILE A . n A 1 34 LEU 34 52 52 LEU LEU A . n A 1 35 VAL 35 53 53 VAL VAL A . n A 1 36 TYR 36 54 54 TYR TYR A . n A 1 37 ARG 37 55 55 ARG ARG A . n A 1 38 VAL 38 56 56 VAL VAL A . n A 1 39 ASP 39 57 57 ASP ASP A . n A 1 40 GLN 40 58 58 GLN GLN A . n A 1 41 ALA 41 59 59 ALA ALA A . n A 1 42 TYR 42 60 60 TYR TYR A . n A 1 43 GLU 43 61 61 GLU GLU A . n A 1 44 TYR 44 62 62 TYR TYR A . n A 1 45 PRO 45 63 63 PRO PRO A . n A 1 46 SER 46 64 64 SER SER A . n A 1 47 GLY 47 65 65 GLY GLY A . n A 1 48 MSE 48 66 66 MSE MSE A . n A 1 49 GLU 49 67 67 GLU GLU A . n A 1 50 VAL 50 68 68 VAL VAL A . n A 1 51 VAL 51 69 69 VAL VAL A . n A 1 52 ALA 52 70 70 ALA ALA A . n A 1 53 ASN 53 71 71 ASN ASN A . n A 1 54 TYR 54 72 72 TYR TYR A . n A 1 55 THR 55 73 73 THR THR A . n A 1 56 PHE 56 74 74 PHE PHE A . n A 1 57 ALA 57 75 75 ALA ALA A . n A 1 58 ASP 58 76 76 ASP ASP A . n A 1 59 ALA 59 77 77 ALA ALA A . n A 1 60 ALA 60 78 78 ALA ALA A . n A 1 61 GLY 61 79 79 GLY GLY A . n A 1 62 LYS 62 80 80 LYS LYS A . n A 1 63 THR 63 81 81 THR THR A . n A 1 64 LEU 64 82 82 LEU LEU A . n A 1 65 ASN 65 83 83 ASN ASN A . n A 1 66 SER 66 84 84 SER SER A . n A 1 67 GLY 67 85 85 GLY GLY A . n A 1 68 GLN 68 86 86 GLN GLN A . n A 1 69 MSE 69 87 87 MSE MSE A . n A 1 70 VAL 70 88 88 VAL VAL A . n A 1 71 ALA 71 89 89 ALA ALA A . n A 1 72 ARG 72 90 90 ARG ARG A . n A 1 73 CYS 73 91 91 CYS CYS A . n A 1 74 SER 74 92 92 SER SER A . n A 1 75 ASP 75 93 93 ASP ASP A . n A 1 76 GLY 76 94 94 GLY GLY A . n A 1 77 ASN 77 95 95 ASN ASN A . n A 1 78 PHE 78 96 96 PHE PHE A . n A 1 79 SER 79 97 97 SER SER A . n A 1 80 MSE 80 98 98 MSE MSE A . n A 1 81 SER 81 99 99 SER SER A . n A 1 82 MSE 82 100 100 MSE MSE A . n A 1 83 GLY 83 101 101 GLY GLY A . n A 1 84 ASP 84 102 102 ASP ASP A . n A 1 85 VAL 85 103 103 VAL VAL A . n A 1 86 ALA 86 104 104 ALA ALA A . n A 1 87 THR 87 105 105 THR THR A . n A 1 88 PHE 88 106 106 PHE PHE A . n A 1 89 PRO 89 107 107 PRO PRO A . n A 1 90 THR 90 108 108 THR THR A . n A 1 91 ALA 91 109 109 ALA ALA A . n A 1 92 LEU 92 110 110 LEU LEU A . n A 1 93 ASN 93 111 111 ASN ASN A . n A 1 94 MSE 94 112 112 MSE MSE A . n A 1 95 MSE 95 113 113 MSE MSE A . n A 1 96 ASN 96 114 114 ASN ASN A . n A 1 97 ALA 97 115 115 ALA ALA A . n A 1 98 ASP 98 116 116 ASP ASP A . n A 1 99 VAL 99 117 117 VAL VAL A . n A 1 100 TYR 100 118 118 TYR TYR A . n A 1 101 MSE 101 119 119 MSE MSE A . n A 1 102 MSE 102 120 120 MSE MSE A . n A 1 103 GLY 103 121 121 GLY GLY A . n A 1 104 ASP 104 122 122 ASP ASP A . n A 1 105 LEU 105 123 123 LEU LEU A . n A 1 106 MSE 106 124 124 MSE MSE A . n A 1 107 ASN 107 125 125 ASN ASN A . n A 1 108 TYR 108 126 126 TYR TYR A . n A 1 109 PRO 109 127 127 PRO PRO A . n A 1 110 ASP 110 128 128 ASP ASP A . n A 1 111 ALA 111 129 129 ALA ALA A . n A 1 112 PHE 112 130 130 PHE PHE A . n A 1 113 SER 113 131 131 SER SER A . n A 1 114 ASN 114 132 132 ASN ASN A . n A 1 115 PRO 115 133 133 PRO PRO A . n A 1 116 MSE 116 134 134 MSE MSE A . n A 1 117 ASN 117 135 135 ASN ASN A . n A 1 118 PRO 118 136 136 PRO PRO A . n A 1 119 GLY 119 137 137 GLY GLY A . n A 1 120 ASP 120 138 138 ASP ASP A . n A 1 121 ASP 121 139 139 ASP ASP A . n A 1 122 ASP 122 140 140 ASP ASP A . n A 1 123 GLU 123 141 141 GLU GLU A . n A 1 124 PHE 124 142 142 PHE PHE A . n A 1 125 ASP 125 143 143 ASP ASP A . n A 1 126 ASP 126 144 144 ASP ASP A . n A 1 127 GLY 127 145 145 GLY GLY A . n A 1 128 THR 128 146 146 THR THR A . n A 1 129 LEU 129 147 147 LEU LEU A . n A 1 130 ARG 130 148 148 ARG ARG A . n A 1 131 LEU 131 149 149 LEU LEU A . n A 1 132 TYR 132 150 150 TYR TYR A . n A 1 133 GLN 133 151 151 GLN GLN A . n A 1 134 LYS 134 152 152 LYS LYS A . n A 1 135 GLY 135 153 153 GLY GLY A . n A 1 136 ASN 136 154 154 ASN ASN A . n A 1 137 LYS 137 155 155 LYS LYS A . n A 1 138 ASN 138 156 156 ASN ASN A . n A 1 139 ASN 139 157 157 ASN ASN A . n A 1 140 ARG 140 158 158 ARG ARG A . n A 1 141 ALA 141 159 159 ALA ALA A . n A 1 142 GLU 142 160 160 GLU GLU A . n A 1 143 ILE 143 161 161 ILE ILE A . n A 1 144 SER 144 162 162 SER SER A . n A 1 145 VAL 145 163 163 VAL VAL A . n A 1 146 PHE 146 164 164 PHE PHE A . n A 1 147 ASP 147 165 165 ASP ASP A . n A 1 148 ARG 148 166 166 ARG ARG A . n A 1 149 GLU 149 167 167 GLU GLU A . n A 1 150 PHE 150 168 168 PHE PHE A . n A 1 151 VAL 151 169 169 VAL VAL A . n A 1 152 THR 152 170 170 THR THR A . n A 1 153 THR 153 171 171 THR THR A . n A 1 154 GLU 154 172 172 GLU GLU A . n A 1 155 THR 155 173 173 THR THR A . n A 1 156 VAL 156 174 174 VAL VAL A . n A 1 157 ASN 157 175 175 ASN ASN A . n A 1 158 THR 158 176 176 THR THR A . n A 1 159 PRO 159 177 177 PRO PRO A . n A 1 160 ALA 160 178 178 ALA ALA A . n A 1 161 GLY 161 179 179 GLY GLY A . n A 1 162 ALA 162 180 180 ALA ALA A . n A 1 163 PHE 163 181 181 PHE PHE A . n A 1 164 TYR 164 182 182 TYR TYR A . n A 1 165 CYS 165 183 183 CYS CYS A . n A 1 166 THR 166 184 184 THR THR A . n A 1 167 LYS 167 185 185 LYS LYS A . n A 1 168 VAL 168 186 186 VAL VAL A . n A 1 169 LYS 169 187 187 LYS LYS A . n A 1 170 TYR 170 188 188 TYR TYR A . n A 1 171 GLU 171 189 189 GLU GLU A . n A 1 172 MSE 172 190 190 MSE MSE A . n A 1 173 ASN 173 191 191 ASN ASN A . n A 1 174 ILE 174 192 192 ILE ILE A . n A 1 175 TRP 175 193 193 TRP TRP A . n A 1 176 THR 176 194 194 THR THR A . n A 1 177 PRO 177 195 195 PRO PRO A . n A 1 178 LYS 178 196 196 LYS LYS A . n A 1 179 GLU 179 197 197 GLU GLU A . n A 1 180 THR 180 198 198 THR THR A . n A 1 181 ILE 181 199 199 ILE ILE A . n A 1 182 LYS 182 200 200 LYS LYS A . n A 1 183 GLY 183 201 201 GLY GLY A . n A 1 184 TYR 184 202 202 TYR TYR A . n A 1 185 GLY 185 203 203 GLY GLY A . n A 1 186 TYR 186 204 204 TYR TYR A . n A 1 187 GLU 187 205 205 GLU GLU A . n A 1 188 TRP 188 206 206 TRP TRP A . n A 1 189 TYR 189 207 207 TYR TYR A . n A 1 190 ALA 190 208 208 ALA ALA A . n A 1 191 PRO 191 209 209 PRO PRO A . n A 1 192 ASN 192 210 210 ASN ASN A . n A 1 193 ILE 193 211 211 ILE ILE A . n A 1 194 GLY 194 212 212 GLY GLY A . n A 1 195 ILE 195 213 213 ILE ILE A . n A 1 196 VAL 196 214 214 VAL VAL A . n A 1 197 ARG 197 215 215 ARG ARG A . n A 1 198 SER 198 216 216 SER SER A . n A 1 199 GLU 199 217 217 GLU GLU A . n A 1 200 GLN 200 218 218 GLN GLN A . n A 1 201 TYR 201 219 219 TYR TYR A . n A 1 202 ASN 202 220 220 ASN ASN A . n A 1 203 ASN 203 221 221 ASN ASN A . n A 1 204 LYS 204 222 222 LYS LYS A . n A 1 205 LYS 205 223 223 LYS LYS A . n A 1 206 GLU 206 224 224 GLU GLU A . n A 1 207 LEU 207 225 225 LEU LEU A . n A 1 208 GLN 208 226 226 GLN GLN A . n A 1 209 SER 209 227 227 SER SER A . n A 1 210 TYR 210 228 228 TYR TYR A . n A 1 211 SER 211 229 229 SER SER A . n A 1 212 VAL 212 230 230 VAL VAL A . n A 1 213 LEU 213 231 231 LEU LEU A . n A 1 214 GLU 214 232 232 GLU GLU A . n A 1 215 ARG 215 233 233 ARG ARG A . n A 1 216 ILE 216 234 234 ILE ILE A . n A 1 217 LYS 217 235 235 LYS LYS A . n A 1 218 LYS 218 236 236 LYS LYS A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1 1 CA CA A . C 2 CA 1 2 2 CA CA A . D 3 HOH 1 3 3 HOH HOH A . D 3 HOH 2 4 4 HOH HOH A . D 3 HOH 3 5 5 HOH HOH A . D 3 HOH 4 6 6 HOH HOH A . D 3 HOH 5 7 7 HOH HOH A . D 3 HOH 6 8 8 HOH HOH A . D 3 HOH 7 9 9 HOH HOH A . D 3 HOH 8 10 10 HOH HOH A . D 3 HOH 9 11 11 HOH HOH A . D 3 HOH 10 12 12 HOH HOH A . D 3 HOH 11 13 13 HOH HOH A . D 3 HOH 12 14 14 HOH HOH A . D 3 HOH 13 15 15 HOH HOH A . D 3 HOH 14 16 16 HOH HOH A . D 3 HOH 15 17 17 HOH HOH A . D 3 HOH 16 18 18 HOH HOH A . D 3 HOH 17 237 19 HOH HOH A . D 3 HOH 18 238 20 HOH HOH A . D 3 HOH 19 239 21 HOH HOH A . D 3 HOH 20 240 22 HOH HOH A . D 3 HOH 21 241 23 HOH HOH A . D 3 HOH 22 242 24 HOH HOH A . D 3 HOH 23 243 25 HOH HOH A . D 3 HOH 24 244 26 HOH HOH A . D 3 HOH 25 245 27 HOH HOH A . D 3 HOH 26 246 28 HOH HOH A . D 3 HOH 27 247 29 HOH HOH A . D 3 HOH 28 248 30 HOH HOH A . D 3 HOH 29 249 31 HOH HOH A . D 3 HOH 30 250 32 HOH HOH A . D 3 HOH 31 251 33 HOH HOH A . D 3 HOH 32 252 34 HOH HOH A . D 3 HOH 33 253 35 HOH HOH A . D 3 HOH 34 254 36 HOH HOH A . D 3 HOH 35 255 37 HOH HOH A . D 3 HOH 36 256 38 HOH HOH A . D 3 HOH 37 257 39 HOH HOH A . D 3 HOH 38 258 40 HOH HOH A . D 3 HOH 39 259 41 HOH HOH A . D 3 HOH 40 260 42 HOH HOH A . D 3 HOH 41 261 43 HOH HOH A . D 3 HOH 42 262 44 HOH HOH A . D 3 HOH 43 263 45 HOH HOH A . D 3 HOH 44 264 46 HOH HOH A . D 3 HOH 45 265 47 HOH HOH A . D 3 HOH 46 266 48 HOH HOH A . D 3 HOH 47 267 49 HOH HOH A . D 3 HOH 48 268 50 HOH HOH A . D 3 HOH 49 269 51 HOH HOH A . D 3 HOH 50 270 52 HOH HOH A . D 3 HOH 51 271 53 HOH HOH A . D 3 HOH 52 272 54 HOH HOH A . D 3 HOH 53 273 55 HOH HOH A . D 3 HOH 54 274 56 HOH HOH A . D 3 HOH 55 275 57 HOH HOH A . D 3 HOH 56 276 58 HOH HOH A . D 3 HOH 57 277 59 HOH HOH A . D 3 HOH 58 278 60 HOH HOH A . D 3 HOH 59 279 61 HOH HOH A . D 3 HOH 60 280 62 HOH HOH A . D 3 HOH 61 281 63 HOH HOH A . D 3 HOH 62 282 64 HOH HOH A . D 3 HOH 63 283 65 HOH HOH A . D 3 HOH 64 284 66 HOH HOH A . D 3 HOH 65 285 67 HOH HOH A . D 3 HOH 66 286 68 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 48 A MSE 66 ? MET SELENOMETHIONINE 2 A MSE 69 A MSE 87 ? MET SELENOMETHIONINE 3 A MSE 80 A MSE 98 ? MET SELENOMETHIONINE 4 A MSE 82 A MSE 100 ? MET SELENOMETHIONINE 5 A MSE 94 A MSE 112 ? MET SELENOMETHIONINE 6 A MSE 95 A MSE 113 ? MET SELENOMETHIONINE 7 A MSE 101 A MSE 119 ? MET SELENOMETHIONINE 8 A MSE 102 A MSE 120 ? MET SELENOMETHIONINE 9 A MSE 106 A MSE 124 ? MET SELENOMETHIONINE 10 A MSE 116 A MSE 134 ? MET SELENOMETHIONINE 11 A MSE 172 A MSE 190 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2590 ? 1 MORE -0.6 ? 1 'SSA (A^2)' 18150 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 14 ? 1_555 76.1 ? 2 O ? D HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 153.5 ? 3 O ? D HOH . ? A HOH 14 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 82.3 ? 4 O ? D HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD2 ? A ASP 121 ? A ASP 139 ? 1_555 155.9 ? 5 O ? D HOH . ? A HOH 14 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD2 ? A ASP 121 ? A ASP 139 ? 1_555 125.2 ? 6 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD2 ? A ASP 121 ? A ASP 139 ? 1_555 50.3 ? 7 O ? D HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASP 122 ? A ASP 140 ? 1_555 101.4 ? 8 O ? D HOH . ? A HOH 14 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASP 122 ? A ASP 140 ? 1_555 87.8 ? 9 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASP 122 ? A ASP 140 ? 1_555 92.9 ? 10 OD2 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASP 122 ? A ASP 140 ? 1_555 71.4 ? 11 O ? D HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 254 ? 1_555 74.8 ? 12 O ? D HOH . ? A HOH 14 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 254 ? 1_555 143.6 ? 13 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 254 ? 1_555 117.2 ? 14 OD2 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 254 ? 1_555 88.5 ? 15 OD1 ? A ASP 122 ? A ASP 140 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 254 ? 1_555 119.1 ? 16 O ? D HOH . ? A HOH 3 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 285 ? 1_555 78.3 ? 17 O ? D HOH . ? A HOH 14 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 285 ? 1_555 134.2 ? 18 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 285 ? 1_555 128.1 ? 19 OD2 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 285 ? 1_555 78.2 ? 20 OD1 ? A ASP 122 ? A ASP 140 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 285 ? 1_555 60.9 ? 21 O ? D HOH . ? A HOH 254 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? D HOH . ? A HOH 285 ? 1_555 58.9 ? 22 O ? A GLY 119 ? A GLY 137 ? 1_555 CA ? C CA . ? A CA 2 ? 1_555 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 89.6 ? 23 O ? A GLY 119 ? A GLY 137 ? 1_555 CA ? C CA . ? A CA 2 ? 1_555 O ? D HOH . ? A HOH 237 ? 1_555 86.4 ? 24 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? C CA . ? A CA 2 ? 1_555 O ? D HOH . ? A HOH 237 ? 1_555 79.2 ? 25 O ? A GLY 119 ? A GLY 137 ? 1_555 CA ? C CA . ? A CA 2 ? 1_555 O ? D HOH . ? A HOH 286 ? 1_555 75.8 ? 26 OD1 ? A ASP 121 ? A ASP 139 ? 1_555 CA ? C CA . ? A CA 2 ? 1_555 O ? D HOH . ? A HOH 286 ? 1_555 148.0 ? 27 O ? D HOH . ? A HOH 237 ? 1_555 CA ? C CA . ? A CA 2 ? 1_555 O ? D HOH . ? A HOH 286 ? 1_555 71.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Author supporting evidence' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_ref_seq_dif 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.value' 29 5 'Structure model' '_struct_conn.pdbx_dist_value' 30 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 42 5 'Structure model' '_struct_ref_seq_dif.details' 43 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 44 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 45 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 52.7844 _pdbx_refine_tls.origin_y 12.6835 _pdbx_refine_tls.origin_z 6.7711 _pdbx_refine_tls.T[1][1] 0.0759 _pdbx_refine_tls.T[2][2] 0.0160 _pdbx_refine_tls.T[3][3] 0.0154 _pdbx_refine_tls.T[1][2] 0.0302 _pdbx_refine_tls.T[1][3] 0.0068 _pdbx_refine_tls.T[2][3] 0.0065 _pdbx_refine_tls.L[1][1] 0.9093 _pdbx_refine_tls.L[2][2] 1.6282 _pdbx_refine_tls.L[3][3] 1.5983 _pdbx_refine_tls.L[1][2] -0.1153 _pdbx_refine_tls.L[1][3] -0.3273 _pdbx_refine_tls.L[2][3] 0.5805 _pdbx_refine_tls.S[1][1] -0.0052 _pdbx_refine_tls.S[2][2] -0.0082 _pdbx_refine_tls.S[3][3] 0.0134 _pdbx_refine_tls.S[1][2] -0.0077 _pdbx_refine_tls.S[1][3] 0.0319 _pdbx_refine_tls.S[2][3] -0.0184 _pdbx_refine_tls.S[2][1] -0.0555 _pdbx_refine_tls.S[3][1] -0.1014 _pdbx_refine_tls.S[3][2] -0.0765 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.beg_auth_seq_id 25 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 236 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3FZX _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 20-236) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 189 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 256 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 166 ? ? CZ A ARG 166 ? ? NH1 A ARG 166 ? ? 123.45 120.30 3.15 0.50 N 2 1 NE A ARG 166 ? ? CZ A ARG 166 ? ? NH2 A ARG 166 ? ? 116.89 120.30 -3.41 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 93 ? ? 57.16 -129.30 2 1 ASN A 154 ? ? -157.51 69.89 3 1 ILE A 211 ? ? -130.48 -47.64 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id CYS _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 25 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id SG _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id CYS _pdbx_unobs_or_zero_occ_atoms.label_seq_id 7 _pdbx_unobs_or_zero_occ_atoms.label_atom_id SG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 19 ? A GLY 1 2 1 Y 1 A ALA 20 ? A ALA 2 3 1 Y 1 A GLN 21 ? A GLN 3 4 1 Y 1 A ASN 22 ? A ASN 4 5 1 Y 1 A GLN 23 ? A GLN 5 6 1 Y 1 A ASP 24 ? A ASP 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #