data_3GIB # _entry.id 3GIB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GIB pdb_00003gib 10.2210/pdb3gib/pdb NDB PR0375 ? ? RCSB RCSB051895 ? ? WWPDB D_1000051895 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-02-01 4 'Structure model' 1 3 2018-04-04 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 5 'Structure model' Advisory 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.type' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3GIB _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-03-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Link, T.M.' 1 'Valentin-Hansen, P.' 2 'Brennan, R.G.' 3 # _citation.id primary _citation.title 'Structure of Escherichia coli Hfq bound to polyriboadenylate RNA' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 106 _citation.page_first 19292 _citation.page_last 19297 _citation.year 2009 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19889981 _citation.pdbx_database_id_DOI 10.1073/pnas.0908744106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Link, T.M.' 1 ? primary 'Valentin-Hansen, P.' 2 ? primary 'Brennan, R.G.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein hfq' 7634.875 3 ? ? 'N-terminal fragment (2-69)' ? 2 polymer syn "5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'" 2917.895 1 ? ? ? ? 3 non-polymer syn '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' 207.290 3 ? ? ? ? 4 water nat water 18.015 9 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Host factor-I protein, HF-I, HF-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no AKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVS AKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVS A,B,C ? 2 polyribonucleotide no no AAAAAAAAA AAAAAAAAA H ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' NHE 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 GLY n 1 4 GLN n 1 5 SER n 1 6 LEU n 1 7 GLN n 1 8 ASP n 1 9 PRO n 1 10 PHE n 1 11 LEU n 1 12 ASN n 1 13 ALA n 1 14 LEU n 1 15 ARG n 1 16 ARG n 1 17 GLU n 1 18 ARG n 1 19 VAL n 1 20 PRO n 1 21 VAL n 1 22 SER n 1 23 ILE n 1 24 TYR n 1 25 LEU n 1 26 VAL n 1 27 ASN n 1 28 GLY n 1 29 ILE n 1 30 LYS n 1 31 LEU n 1 32 GLN n 1 33 GLY n 1 34 GLN n 1 35 ILE n 1 36 GLU n 1 37 SER n 1 38 PHE n 1 39 ASP n 1 40 GLN n 1 41 PHE n 1 42 VAL n 1 43 ILE n 1 44 LEU n 1 45 LEU n 1 46 LYS n 1 47 ASN n 1 48 THR n 1 49 VAL n 1 50 SER n 1 51 GLN n 1 52 MET n 1 53 VAL n 1 54 TYR n 1 55 LYS n 1 56 HIS n 1 57 ALA n 1 58 ILE n 1 59 SER n 1 60 THR n 1 61 VAL n 1 62 VAL n 1 63 PRO n 1 64 SER n 1 65 ARG n 1 66 PRO n 1 67 VAL n 1 68 SER n 2 1 A n 2 2 A n 2 3 A n 2 4 A n 2 5 A n 2 6 A n 2 7 A n 2 8 A n 2 9 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b4172, hfq, JW4130' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 null hfq' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PTYB11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NHE non-polymer . '2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID' 'N-CYCLOHEXYLTAURINE; CHES' 'C8 H17 N O3 S' 207.290 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 ? ? ? A . n A 1 2 LYS 2 3 ? ? ? A . n A 1 3 GLY 3 4 ? ? ? A . n A 1 4 GLN 4 5 ? ? ? A . n A 1 5 SER 5 6 6 SER SER A . n A 1 6 LEU 6 7 7 LEU LEU A . n A 1 7 GLN 7 8 8 GLN GLN A . n A 1 8 ASP 8 9 9 ASP ASP A . n A 1 9 PRO 9 10 10 PRO PRO A . n A 1 10 PHE 10 11 11 PHE PHE A . n A 1 11 LEU 11 12 12 LEU LEU A . n A 1 12 ASN 12 13 13 ASN ASN A . n A 1 13 ALA 13 14 14 ALA ALA A . n A 1 14 LEU 14 15 15 LEU LEU A . n A 1 15 ARG 15 16 16 ARG ARG A . n A 1 16 ARG 16 17 17 ARG ARG A . n A 1 17 GLU 17 18 18 GLU GLU A . n A 1 18 ARG 18 19 19 ARG ARG A . n A 1 19 VAL 19 20 20 VAL VAL A . n A 1 20 PRO 20 21 21 PRO PRO A . n A 1 21 VAL 21 22 22 VAL VAL A . n A 1 22 SER 22 23 23 SER SER A . n A 1 23 ILE 23 24 24 ILE ILE A . n A 1 24 TYR 24 25 25 TYR TYR A . n A 1 25 LEU 25 26 26 LEU LEU A . n A 1 26 VAL 26 27 27 VAL VAL A . n A 1 27 ASN 27 28 28 ASN ASN A . n A 1 28 GLY 28 29 29 GLY GLY A . n A 1 29 ILE 29 30 30 ILE ILE A . n A 1 30 LYS 30 31 31 LYS LYS A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 GLN 32 33 33 GLN GLN A . n A 1 33 GLY 33 34 34 GLY GLY A . n A 1 34 GLN 34 35 35 GLN GLN A . n A 1 35 ILE 35 36 36 ILE ILE A . n A 1 36 GLU 36 37 37 GLU GLU A . n A 1 37 SER 37 38 38 SER SER A . n A 1 38 PHE 38 39 39 PHE PHE A . n A 1 39 ASP 39 40 40 ASP ASP A . n A 1 40 GLN 40 41 41 GLN GLN A . n A 1 41 PHE 41 42 42 PHE PHE A . n A 1 42 VAL 42 43 43 VAL VAL A . n A 1 43 ILE 43 44 44 ILE ILE A . n A 1 44 LEU 44 45 45 LEU LEU A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 LYS 46 47 47 LYS LYS A . n A 1 47 ASN 47 48 48 ASN ASN A . n A 1 48 THR 48 49 49 THR THR A . n A 1 49 VAL 49 50 50 VAL VAL A . n A 1 50 SER 50 51 51 SER SER A . n A 1 51 GLN 51 52 52 GLN GLN A . n A 1 52 MET 52 53 53 MET MET A . n A 1 53 VAL 53 54 54 VAL VAL A . n A 1 54 TYR 54 55 55 TYR TYR A . n A 1 55 LYS 55 56 56 LYS LYS A . n A 1 56 HIS 56 57 57 HIS HIS A . n A 1 57 ALA 57 58 58 ALA ALA A . n A 1 58 ILE 58 59 59 ILE ILE A . n A 1 59 SER 59 60 60 SER SER A . n A 1 60 THR 60 61 61 THR THR A . n A 1 61 VAL 61 62 62 VAL VAL A . n A 1 62 VAL 62 63 63 VAL VAL A . n A 1 63 PRO 63 64 64 PRO PRO A . n A 1 64 SER 64 65 65 SER SER A . n A 1 65 ARG 65 66 66 ARG ARG A . n A 1 66 PRO 66 67 67 PRO PRO A . n A 1 67 VAL 67 68 68 VAL VAL A . n A 1 68 SER 68 69 69 SER SER A . n B 1 1 ALA 1 2 ? ? ? B . n B 1 2 LYS 2 3 ? ? ? B . n B 1 3 GLY 3 4 4 GLY GLY B . n B 1 4 GLN 4 5 5 GLN GLN B . n B 1 5 SER 5 6 6 SER SER B . n B 1 6 LEU 6 7 7 LEU LEU B . n B 1 7 GLN 7 8 8 GLN GLN B . n B 1 8 ASP 8 9 9 ASP ASP B . n B 1 9 PRO 9 10 10 PRO PRO B . n B 1 10 PHE 10 11 11 PHE PHE B . n B 1 11 LEU 11 12 12 LEU LEU B . n B 1 12 ASN 12 13 13 ASN ASN B . n B 1 13 ALA 13 14 14 ALA ALA B . n B 1 14 LEU 14 15 15 LEU LEU B . n B 1 15 ARG 15 16 16 ARG ARG B . n B 1 16 ARG 16 17 17 ARG ARG B . n B 1 17 GLU 17 18 18 GLU GLU B . n B 1 18 ARG 18 19 19 ARG ARG B . n B 1 19 VAL 19 20 20 VAL VAL B . n B 1 20 PRO 20 21 21 PRO PRO B . n B 1 21 VAL 21 22 22 VAL VAL B . n B 1 22 SER 22 23 23 SER SER B . n B 1 23 ILE 23 24 24 ILE ILE B . n B 1 24 TYR 24 25 25 TYR TYR B . n B 1 25 LEU 25 26 26 LEU LEU B . n B 1 26 VAL 26 27 27 VAL VAL B . n B 1 27 ASN 27 28 28 ASN ASN B . n B 1 28 GLY 28 29 29 GLY GLY B . n B 1 29 ILE 29 30 30 ILE ILE B . n B 1 30 LYS 30 31 31 LYS LYS B . n B 1 31 LEU 31 32 32 LEU LEU B . n B 1 32 GLN 32 33 33 GLN GLN B . n B 1 33 GLY 33 34 34 GLY GLY B . n B 1 34 GLN 34 35 35 GLN GLN B . n B 1 35 ILE 35 36 36 ILE ILE B . n B 1 36 GLU 36 37 37 GLU GLU B . n B 1 37 SER 37 38 38 SER SER B . n B 1 38 PHE 38 39 39 PHE PHE B . n B 1 39 ASP 39 40 40 ASP ASP B . n B 1 40 GLN 40 41 41 GLN GLN B . n B 1 41 PHE 41 42 42 PHE PHE B . n B 1 42 VAL 42 43 43 VAL VAL B . n B 1 43 ILE 43 44 44 ILE ILE B . n B 1 44 LEU 44 45 45 LEU LEU B . n B 1 45 LEU 45 46 46 LEU LEU B . n B 1 46 LYS 46 47 47 LYS LYS B . n B 1 47 ASN 47 48 48 ASN ASN B . n B 1 48 THR 48 49 49 THR THR B . n B 1 49 VAL 49 50 50 VAL VAL B . n B 1 50 SER 50 51 51 SER SER B . n B 1 51 GLN 51 52 52 GLN GLN B . n B 1 52 MET 52 53 53 MET MET B . n B 1 53 VAL 53 54 54 VAL VAL B . n B 1 54 TYR 54 55 55 TYR TYR B . n B 1 55 LYS 55 56 56 LYS LYS B . n B 1 56 HIS 56 57 57 HIS HIS B . n B 1 57 ALA 57 58 58 ALA ALA B . n B 1 58 ILE 58 59 59 ILE ILE B . n B 1 59 SER 59 60 60 SER SER B . n B 1 60 THR 60 61 61 THR THR B . n B 1 61 VAL 61 62 62 VAL VAL B . n B 1 62 VAL 62 63 63 VAL VAL B . n B 1 63 PRO 63 64 64 PRO PRO B . n B 1 64 SER 64 65 65 SER SER B . n B 1 65 ARG 65 66 66 ARG ALA B . n B 1 66 PRO 66 67 67 PRO PRO B . n B 1 67 VAL 67 68 68 VAL VAL B . n B 1 68 SER 68 69 ? ? ? B . n C 1 1 ALA 1 2 ? ? ? C . n C 1 2 LYS 2 3 ? ? ? C . n C 1 3 GLY 3 4 ? ? ? C . n C 1 4 GLN 4 5 ? ? ? C . n C 1 5 SER 5 6 6 SER SER C . n C 1 6 LEU 6 7 7 LEU LEU C . n C 1 7 GLN 7 8 8 GLN GLN C . n C 1 8 ASP 8 9 9 ASP ASP C . n C 1 9 PRO 9 10 10 PRO PRO C . n C 1 10 PHE 10 11 11 PHE PHE C . n C 1 11 LEU 11 12 12 LEU LEU C . n C 1 12 ASN 12 13 13 ASN ASN C . n C 1 13 ALA 13 14 14 ALA ALA C . n C 1 14 LEU 14 15 15 LEU LEU C . n C 1 15 ARG 15 16 16 ARG ARG C . n C 1 16 ARG 16 17 17 ARG ARG C . n C 1 17 GLU 17 18 18 GLU GLU C . n C 1 18 ARG 18 19 19 ARG ARG C . n C 1 19 VAL 19 20 20 VAL VAL C . n C 1 20 PRO 20 21 21 PRO PRO C . n C 1 21 VAL 21 22 22 VAL VAL C . n C 1 22 SER 22 23 23 SER SER C . n C 1 23 ILE 23 24 24 ILE ILE C . n C 1 24 TYR 24 25 25 TYR TYR C . n C 1 25 LEU 25 26 26 LEU LEU C . n C 1 26 VAL 26 27 27 VAL VAL C . n C 1 27 ASN 27 28 28 ASN ASN C . n C 1 28 GLY 28 29 29 GLY GLY C . n C 1 29 ILE 29 30 30 ILE ILE C . n C 1 30 LYS 30 31 31 LYS LYS C . n C 1 31 LEU 31 32 32 LEU LEU C . n C 1 32 GLN 32 33 33 GLN GLN C . n C 1 33 GLY 33 34 34 GLY GLY C . n C 1 34 GLN 34 35 35 GLN GLN C . n C 1 35 ILE 35 36 36 ILE ILE C . n C 1 36 GLU 36 37 37 GLU GLU C . n C 1 37 SER 37 38 38 SER SER C . n C 1 38 PHE 38 39 39 PHE PHE C . n C 1 39 ASP 39 40 40 ASP ASP C . n C 1 40 GLN 40 41 41 GLN GLN C . n C 1 41 PHE 41 42 42 PHE PHE C . n C 1 42 VAL 42 43 43 VAL VAL C . n C 1 43 ILE 43 44 44 ILE ILE C . n C 1 44 LEU 44 45 45 LEU LEU C . n C 1 45 LEU 45 46 46 LEU LEU C . n C 1 46 LYS 46 47 47 LYS LYS C . n C 1 47 ASN 47 48 48 ASN ASN C . n C 1 48 THR 48 49 49 THR THR C . n C 1 49 VAL 49 50 50 VAL VAL C . n C 1 50 SER 50 51 51 SER SER C . n C 1 51 GLN 51 52 52 GLN GLN C . n C 1 52 MET 52 53 53 MET MET C . n C 1 53 VAL 53 54 54 VAL VAL C . n C 1 54 TYR 54 55 55 TYR TYR C . n C 1 55 LYS 55 56 56 LYS LYS C . n C 1 56 HIS 56 57 57 HIS HIS C . n C 1 57 ALA 57 58 58 ALA ALA C . n C 1 58 ILE 58 59 59 ILE ILE C . n C 1 59 SER 59 60 60 SER SER C . n C 1 60 THR 60 61 61 THR THR C . n C 1 61 VAL 61 62 62 VAL VAL C . n C 1 62 VAL 62 63 63 VAL VAL C . n C 1 63 PRO 63 64 64 PRO PRO C . n C 1 64 SER 64 65 65 SER SER C . n C 1 65 ARG 65 66 66 ARG ARG C . n C 1 66 PRO 66 67 67 PRO PRO C . n C 1 67 VAL 67 68 ? ? ? C . n C 1 68 SER 68 69 ? ? ? C . n D 2 1 A 1 1 1 A A H . n D 2 2 A 2 2 2 A A H . n D 2 3 A 3 3 3 A A H . n D 2 4 A 4 4 4 A A H . n D 2 5 A 5 5 5 A A H . n D 2 6 A 6 6 6 A A H . n D 2 7 A 7 7 7 A A H . n D 2 8 A 8 8 8 A A H . n D 2 9 A 9 9 9 A A H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NHE 1 70 2 NHE NHE A . F 3 NHE 1 71 3 NHE NHE A . G 3 NHE 1 70 1 NHE NHE C . H 4 HOH 1 72 1 HOH HOH A . I 4 HOH 1 70 2 HOH HOH B . I 4 HOH 2 71 4 HOH HOH B . J 4 HOH 1 71 3 HOH HOH C . J 4 HOH 2 72 5 HOH HOH C . J 4 HOH 3 73 6 HOH HOH C . J 4 HOH 4 74 7 HOH HOH C . K 4 HOH 1 10 8 HOH HOH H . K 4 HOH 2 11 9 HOH HOH H . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ARG 66 ? CG ? B ARG 65 CG 2 1 Y 1 B ARG 66 ? CD ? B ARG 65 CD 3 1 Y 1 B ARG 66 ? NE ? B ARG 65 NE 4 1 Y 1 B ARG 66 ? CZ ? B ARG 65 CZ 5 1 Y 1 B ARG 66 ? NH1 ? B ARG 65 NH1 6 1 Y 1 B ARG 66 ? NH2 ? B ARG 65 NH2 7 1 N 0 A NHE 70 ? "C3'" ? E NHE ? "C3'" 8 1 N 0 A NHE 70 ? "C2'" ? E NHE ? "C2'" 9 1 N 0 A NHE 70 ? "C1'" ? E NHE ? "C1'" 10 1 N 0 A NHE 70 ? "C6'" ? E NHE ? "C6'" 11 1 N 0 A NHE 70 ? N ? E NHE ? N 12 1 N 0 A NHE 70 ? C1 ? E NHE ? C1 13 1 N 0 A NHE 70 ? "C5'" ? E NHE ? "C5'" 14 1 N 0 A NHE 70 ? "C4'" ? E NHE ? "C4'" 15 1 N 0 A NHE 71 ? "C3'" ? F NHE ? "C3'" 16 1 N 0 A NHE 71 ? "C2'" ? F NHE ? "C2'" 17 1 N 0 A NHE 71 ? "C1'" ? F NHE ? "C1'" 18 1 N 0 A NHE 71 ? "C6'" ? F NHE ? "C6'" 19 1 N 0 A NHE 71 ? N ? F NHE ? N 20 1 N 0 A NHE 71 ? C1 ? F NHE ? C1 21 1 N 0 A NHE 71 ? "C5'" ? F NHE ? "C5'" 22 1 N 0 A NHE 71 ? "C4'" ? F NHE ? "C4'" 23 1 N 0 C NHE 70 ? "C3'" ? G NHE ? "C3'" 24 1 N 0 C NHE 70 ? "C2'" ? G NHE ? "C2'" 25 1 N 0 C NHE 70 ? "C1'" ? G NHE ? "C1'" 26 1 N 0 C NHE 70 ? "C6'" ? G NHE ? "C6'" 27 1 N 0 C NHE 70 ? N ? G NHE ? N 28 1 N 0 C NHE 70 ? C1 ? G NHE ? C1 29 1 N 0 C NHE 70 ? "C5'" ? G NHE ? "C5'" 30 1 N 0 C NHE 70 ? "C4'" ? G NHE ? "C4'" # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 # _cell.length_a 66.534 _cell.length_b 88.960 _cell.length_c 39.635 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3GIB _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3GIB _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3GIB _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '40% MPD, 0.1 M CHES 9.5, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 CHES ? ? ? 1 3 2 MPD ? ? ? 1 4 2 CHES ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2008-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.02 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list 1.02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 # _reflns.entry_id 3GIB _reflns.d_resolution_high 2.400 _reflns.d_resolution_low 89.087 _reflns.number_all ? _reflns.number_obs 9714 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_netI_over_sigmaI 8.142 _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_redundancy 6.800 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.40 2.53 ? 9807 ? 0.446 1.7 0.446 ? 7.10 ? 1385 99.80 1 1 2.53 2.68 ? 9205 ? 0.299 2.5 0.299 ? 7.00 ? 1309 100.00 2 1 2.68 2.87 ? 8713 ? 0.161 4.5 0.161 ? 7.00 ? 1248 100.00 3 1 2.87 3.10 ? 8052 ? 0.094 7.2 0.094 ? 7.00 ? 1153 100.00 4 1 3.10 3.39 ? 7349 ? 0.061 10.8 0.061 ? 6.90 ? 1061 99.70 5 1 3.39 3.79 ? 6648 ? 0.043 13.8 0.043 ? 6.90 ? 970 99.90 6 1 3.79 4.38 ? 5858 ? 0.042 12.9 0.042 ? 6.70 ? 878 100.00 7 1 4.38 5.37 ? 4849 ? 0.043 13.2 0.043 ? 6.50 ? 747 100.00 8 1 5.37 7.59 ? 3561 ? 0.035 14.2 0.035 ? 6.00 ? 597 100.00 9 1 7.59 89.09 ? 2180 ? 0.034 15.3 0.034 ? 6.00 ? 366 99.10 10 1 # _refine.entry_id 3GIB _refine.ls_d_res_high 2.400 _refine.ls_d_res_low 44.50 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.770 _refine.ls_number_reflns_obs 9680 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.225 _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.259 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 467 _refine.B_iso_mean 61.557 _refine.aniso_B[1][1] -4.320 _refine.aniso_B[2][2] 0.330 _refine.aniso_B[3][3] 3.990 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.pdbx_overall_ESU_R 0.481 _refine.pdbx_overall_ESU_R_Free 0.275 _refine.overall_SU_ML 0.240 _refine.overall_SU_B 10.383 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 129.26 _refine.B_iso_min 20.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.00 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1519 _refine_hist.pdbx_number_atoms_nucleic_acid 199 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 1766 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 44.50 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1785 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2470 1.223 2.133 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 188 7.247 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 66 29.865 23.939 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 278 17.312 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 11.845 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 300 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1243 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 643 0.204 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1168 0.308 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 69 0.124 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 36 0.226 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 8 0.221 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 984 2.503 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1580 4.187 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 951 2.229 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 890 3.495 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.720 _refine_ls_shell.number_reflns_R_work 680 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.296 _refine_ls_shell.R_factor_R_free 0.329 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 33 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 713 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GIB _struct.title 'Crystal Structure of the Complex of the E. coli Hfq with Poly(A)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GIB _struct_keywords.text ;RNA binding protein, Hfq-RNA complex, degradosome component, DNA-binding, RNA-binding, Stress response, RNA binding protein-RNA COMPLEX ; _struct_keywords.pdbx_keywords 'RNA binding protein/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP HFQ_ECOLI P0A6X3 1 AKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVS 2 ? 2 PDB 3GIB 3GIB 2 AAAAAAAAA 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GIB A 1 ? 68 ? P0A6X3 2 ? 69 ? 2 69 2 1 3GIB B 1 ? 68 ? P0A6X3 2 ? 69 ? 2 69 3 1 3GIB C 1 ? 68 ? P0A6X3 2 ? 69 ? 2 69 4 2 3GIB H 1 ? 9 ? 3GIB 1 ? 9 ? 1 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8270 ? 1 MORE -71 ? 1 'SSA (A^2)' 18260 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 66.5340000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 6 ? GLU A 17 ? LEU A 7 GLU A 18 1 ? 12 HELX_P HELX_P2 2 LEU B 6 ? GLU B 17 ? LEU B 7 GLU B 18 1 ? 12 HELX_P HELX_P3 3 LEU C 6 ? GLU C 17 ? LEU C 7 GLU C 18 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 15 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel A 12 13 ? anti-parallel A 13 14 ? anti-parallel A 14 15 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 50 ? TYR A 54 ? SER A 51 TYR A 55 A 2 VAL A 42 ? LYS A 46 ? VAL A 43 LYS A 47 A 3 LYS A 30 ? PHE A 38 ? LYS A 31 PHE A 39 A 4 PRO A 20 ? LEU A 25 ? PRO A 21 LEU A 26 A 5 ILE A 58 ? PRO A 63 ? ILE A 59 PRO A 64 A 6 SER B 50 ? TYR B 54 ? SER B 51 TYR B 55 A 7 VAL B 42 ? LYS B 46 ? VAL B 43 LYS B 47 A 8 LYS B 30 ? PHE B 38 ? LYS B 31 PHE B 39 A 9 VAL B 21 ? LEU B 25 ? VAL B 22 LEU B 26 A 10 ILE B 58 ? PRO B 63 ? ILE B 59 PRO B 64 A 11 SER C 50 ? TYR C 54 ? SER C 51 TYR C 55 A 12 VAL C 42 ? LYS C 46 ? VAL C 43 LYS C 47 A 13 LYS C 30 ? PHE C 38 ? LYS C 31 PHE C 39 A 14 PRO C 20 ? LEU C 25 ? PRO C 21 LEU C 26 A 15 ILE C 58 ? PRO C 63 ? ILE C 59 PRO C 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 53 ? O VAL A 54 N ILE A 43 ? N ILE A 44 A 2 3 O LYS A 46 ? O LYS A 47 N GLN A 34 ? N GLN A 35 A 3 4 O GLY A 33 ? O GLY A 34 N VAL A 21 ? N VAL A 22 A 4 5 N SER A 22 ? N SER A 23 O VAL A 62 ? O VAL A 63 A 5 6 N VAL A 61 ? N VAL A 62 O MET B 52 ? O MET B 53 A 6 7 O VAL B 53 ? O VAL B 54 N ILE B 43 ? N ILE B 44 A 7 8 O LEU B 44 ? O LEU B 45 N SER B 37 ? N SER B 38 A 8 9 O LEU B 31 ? O LEU B 32 N ILE B 23 ? N ILE B 24 A 9 10 N SER B 22 ? N SER B 23 O VAL B 62 ? O VAL B 63 A 10 11 N SER B 59 ? N SER B 60 O TYR C 54 ? O TYR C 55 A 11 12 O VAL C 53 ? O VAL C 54 N ILE C 43 ? N ILE C 44 A 12 13 O LYS C 46 ? O LYS C 47 N GLN C 34 ? N GLN C 35 A 13 14 O LEU C 31 ? O LEU C 32 N ILE C 23 ? N ILE C 24 A 14 15 N SER C 22 ? N SER C 23 O VAL C 62 ? O VAL C 63 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NHE 70 ? 1 'BINDING SITE FOR RESIDUE NHE A 70' AC2 Software A NHE 71 ? 2 'BINDING SITE FOR RESIDUE NHE A 71' AC3 Software C NHE 70 ? 1 'BINDING SITE FOR RESIDUE NHE C 70' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 HIS B 56 ? HIS B 57 . ? 1_555 ? 2 AC2 2 HIS A 56 ? HIS A 57 . ? 1_555 ? 3 AC2 2 LYS C 55 ? LYS C 56 . ? 2_655 ? 4 AC3 1 HIS C 56 ? HIS C 57 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NE2 _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 GLN _pdbx_validate_symm_contact.auth_seq_id_1 41 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "C2'" _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 NHE _pdbx_validate_symm_contact.auth_seq_id_2 71 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 1.77 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 H _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 H _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.485 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.122 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 16 ? ? -77.55 -70.15 2 1 ASN A 48 ? ? -142.40 -127.67 3 1 GLN B 5 ? ? -172.90 -19.58 4 1 ASN B 48 ? ? -134.04 -120.41 5 1 PRO B 67 ? ? -72.35 48.53 6 1 GLU C 18 ? ? -67.58 1.48 7 1 ASP C 40 ? ? -136.73 -156.59 8 1 ASN C 48 ? ? -151.50 -110.79 # _pdbx_phasing_MR.entry_id 3GIB _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.500 _pdbx_phasing_MR.d_res_low_rotation 44.480 _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 44.480 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 2 ? A ALA 1 2 1 Y 1 A LYS 3 ? A LYS 2 3 1 Y 1 A GLY 4 ? A GLY 3 4 1 Y 1 A GLN 5 ? A GLN 4 5 1 Y 1 B ALA 2 ? B ALA 1 6 1 Y 1 B LYS 3 ? B LYS 2 7 1 Y 1 B SER 69 ? B SER 68 8 1 Y 1 C ALA 2 ? C ALA 1 9 1 Y 1 C LYS 3 ? C LYS 2 10 1 Y 1 C GLY 4 ? C GLY 3 11 1 Y 1 C GLN 5 ? C GLN 4 12 1 Y 1 C VAL 68 ? C VAL 67 13 1 Y 1 C SER 69 ? C SER 68 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 GLN N N N N 111 GLN CA C N S 112 GLN C C N N 113 GLN O O N N 114 GLN CB C N N 115 GLN CG C N N 116 GLN CD C N N 117 GLN OE1 O N N 118 GLN NE2 N N N 119 GLN OXT O N N 120 GLN H H N N 121 GLN H2 H N N 122 GLN HA H N N 123 GLN HB2 H N N 124 GLN HB3 H N N 125 GLN HG2 H N N 126 GLN HG3 H N N 127 GLN HE21 H N N 128 GLN HE22 H N N 129 GLN HXT H N N 130 GLU N N N N 131 GLU CA C N S 132 GLU C C N N 133 GLU O O N N 134 GLU CB C N N 135 GLU CG C N N 136 GLU CD C N N 137 GLU OE1 O N N 138 GLU OE2 O N N 139 GLU OXT O N N 140 GLU H H N N 141 GLU H2 H N N 142 GLU HA H N N 143 GLU HB2 H N N 144 GLU HB3 H N N 145 GLU HG2 H N N 146 GLU HG3 H N N 147 GLU HE2 H N N 148 GLU HXT H N N 149 GLY N N N N 150 GLY CA C N N 151 GLY C C N N 152 GLY O O N N 153 GLY OXT O N N 154 GLY H H N N 155 GLY H2 H N N 156 GLY HA2 H N N 157 GLY HA3 H N N 158 GLY HXT H N N 159 HIS N N N N 160 HIS CA C N S 161 HIS C C N N 162 HIS O O N N 163 HIS CB C N N 164 HIS CG C Y N 165 HIS ND1 N Y N 166 HIS CD2 C Y N 167 HIS CE1 C Y N 168 HIS NE2 N Y N 169 HIS OXT O N N 170 HIS H H N N 171 HIS H2 H N N 172 HIS HA H N N 173 HIS HB2 H N N 174 HIS HB3 H N N 175 HIS HD1 H N N 176 HIS HD2 H N N 177 HIS HE1 H N N 178 HIS HE2 H N N 179 HIS HXT H N N 180 HOH O O N N 181 HOH H1 H N N 182 HOH H2 H N N 183 ILE N N N N 184 ILE CA C N S 185 ILE C C N N 186 ILE O O N N 187 ILE CB C N S 188 ILE CG1 C N N 189 ILE CG2 C N N 190 ILE CD1 C N N 191 ILE OXT O N N 192 ILE H H N N 193 ILE H2 H N N 194 ILE HA H N N 195 ILE HB H N N 196 ILE HG12 H N N 197 ILE HG13 H N N 198 ILE HG21 H N N 199 ILE HG22 H N N 200 ILE HG23 H N N 201 ILE HD11 H N N 202 ILE HD12 H N N 203 ILE HD13 H N N 204 ILE HXT H N N 205 LEU N N N N 206 LEU CA C N S 207 LEU C C N N 208 LEU O O N N 209 LEU CB C N N 210 LEU CG C N N 211 LEU CD1 C N N 212 LEU CD2 C N N 213 LEU OXT O N N 214 LEU H H N N 215 LEU H2 H N N 216 LEU HA H N N 217 LEU HB2 H N N 218 LEU HB3 H N N 219 LEU HG H N N 220 LEU HD11 H N N 221 LEU HD12 H N N 222 LEU HD13 H N N 223 LEU HD21 H N N 224 LEU HD22 H N N 225 LEU HD23 H N N 226 LEU HXT H N N 227 LYS N N N N 228 LYS CA C N S 229 LYS C C N N 230 LYS O O N N 231 LYS CB C N N 232 LYS CG C N N 233 LYS CD C N N 234 LYS CE C N N 235 LYS NZ N N N 236 LYS OXT O N N 237 LYS H H N N 238 LYS H2 H N N 239 LYS HA H N N 240 LYS HB2 H N N 241 LYS HB3 H N N 242 LYS HG2 H N N 243 LYS HG3 H N N 244 LYS HD2 H N N 245 LYS HD3 H N N 246 LYS HE2 H N N 247 LYS HE3 H N N 248 LYS HZ1 H N N 249 LYS HZ2 H N N 250 LYS HZ3 H N N 251 LYS HXT H N N 252 MET N N N N 253 MET CA C N S 254 MET C C N N 255 MET O O N N 256 MET CB C N N 257 MET CG C N N 258 MET SD S N N 259 MET CE C N N 260 MET OXT O N N 261 MET H H N N 262 MET H2 H N N 263 MET HA H N N 264 MET HB2 H N N 265 MET HB3 H N N 266 MET HG2 H N N 267 MET HG3 H N N 268 MET HE1 H N N 269 MET HE2 H N N 270 MET HE3 H N N 271 MET HXT H N N 272 NHE "C3'" C N N 273 NHE "C2'" C N N 274 NHE "C1'" C N N 275 NHE "C6'" C N N 276 NHE N N N N 277 NHE C1 C N N 278 NHE C2 C N N 279 NHE S S N N 280 NHE O1 O N N 281 NHE O2 O N N 282 NHE O3 O N N 283 NHE "C5'" C N N 284 NHE "C4'" C N N 285 NHE "H3'1" H N N 286 NHE "H3'2" H N N 287 NHE "H2'1" H N N 288 NHE "H2'2" H N N 289 NHE "HC'1" H N N 290 NHE "H6'1" H N N 291 NHE "H6'2" H N N 292 NHE HN H N N 293 NHE HC11 H N N 294 NHE HC12 H N N 295 NHE HC21 H N N 296 NHE HC22 H N N 297 NHE HO3 H N N 298 NHE "H5'1" H N N 299 NHE "H5'2" H N N 300 NHE "H4'1" H N N 301 NHE "H4'2" H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 TYR N N N N 374 TYR CA C N S 375 TYR C C N N 376 TYR O O N N 377 TYR CB C N N 378 TYR CG C Y N 379 TYR CD1 C Y N 380 TYR CD2 C Y N 381 TYR CE1 C Y N 382 TYR CE2 C Y N 383 TYR CZ C Y N 384 TYR OH O N N 385 TYR OXT O N N 386 TYR H H N N 387 TYR H2 H N N 388 TYR HA H N N 389 TYR HB2 H N N 390 TYR HB3 H N N 391 TYR HD1 H N N 392 TYR HD2 H N N 393 TYR HE1 H N N 394 TYR HE2 H N N 395 TYR HH H N N 396 TYR HXT H N N 397 VAL N N N N 398 VAL CA C N S 399 VAL C C N N 400 VAL O O N N 401 VAL CB C N N 402 VAL CG1 C N N 403 VAL CG2 C N N 404 VAL OXT O N N 405 VAL H H N N 406 VAL H2 H N N 407 VAL HA H N N 408 VAL HB H N N 409 VAL HG11 H N N 410 VAL HG12 H N N 411 VAL HG13 H N N 412 VAL HG21 H N N 413 VAL HG22 H N N 414 VAL HG23 H N N 415 VAL HXT H N N 416 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 GLN N CA sing N N 109 GLN N H sing N N 110 GLN N H2 sing N N 111 GLN CA C sing N N 112 GLN CA CB sing N N 113 GLN CA HA sing N N 114 GLN C O doub N N 115 GLN C OXT sing N N 116 GLN CB CG sing N N 117 GLN CB HB2 sing N N 118 GLN CB HB3 sing N N 119 GLN CG CD sing N N 120 GLN CG HG2 sing N N 121 GLN CG HG3 sing N N 122 GLN CD OE1 doub N N 123 GLN CD NE2 sing N N 124 GLN NE2 HE21 sing N N 125 GLN NE2 HE22 sing N N 126 GLN OXT HXT sing N N 127 GLU N CA sing N N 128 GLU N H sing N N 129 GLU N H2 sing N N 130 GLU CA C sing N N 131 GLU CA CB sing N N 132 GLU CA HA sing N N 133 GLU C O doub N N 134 GLU C OXT sing N N 135 GLU CB CG sing N N 136 GLU CB HB2 sing N N 137 GLU CB HB3 sing N N 138 GLU CG CD sing N N 139 GLU CG HG2 sing N N 140 GLU CG HG3 sing N N 141 GLU CD OE1 doub N N 142 GLU CD OE2 sing N N 143 GLU OE2 HE2 sing N N 144 GLU OXT HXT sing N N 145 GLY N CA sing N N 146 GLY N H sing N N 147 GLY N H2 sing N N 148 GLY CA C sing N N 149 GLY CA HA2 sing N N 150 GLY CA HA3 sing N N 151 GLY C O doub N N 152 GLY C OXT sing N N 153 GLY OXT HXT sing N N 154 HIS N CA sing N N 155 HIS N H sing N N 156 HIS N H2 sing N N 157 HIS CA C sing N N 158 HIS CA CB sing N N 159 HIS CA HA sing N N 160 HIS C O doub N N 161 HIS C OXT sing N N 162 HIS CB CG sing N N 163 HIS CB HB2 sing N N 164 HIS CB HB3 sing N N 165 HIS CG ND1 sing Y N 166 HIS CG CD2 doub Y N 167 HIS ND1 CE1 doub Y N 168 HIS ND1 HD1 sing N N 169 HIS CD2 NE2 sing Y N 170 HIS CD2 HD2 sing N N 171 HIS CE1 NE2 sing Y N 172 HIS CE1 HE1 sing N N 173 HIS NE2 HE2 sing N N 174 HIS OXT HXT sing N N 175 HOH O H1 sing N N 176 HOH O H2 sing N N 177 ILE N CA sing N N 178 ILE N H sing N N 179 ILE N H2 sing N N 180 ILE CA C sing N N 181 ILE CA CB sing N N 182 ILE CA HA sing N N 183 ILE C O doub N N 184 ILE C OXT sing N N 185 ILE CB CG1 sing N N 186 ILE CB CG2 sing N N 187 ILE CB HB sing N N 188 ILE CG1 CD1 sing N N 189 ILE CG1 HG12 sing N N 190 ILE CG1 HG13 sing N N 191 ILE CG2 HG21 sing N N 192 ILE CG2 HG22 sing N N 193 ILE CG2 HG23 sing N N 194 ILE CD1 HD11 sing N N 195 ILE CD1 HD12 sing N N 196 ILE CD1 HD13 sing N N 197 ILE OXT HXT sing N N 198 LEU N CA sing N N 199 LEU N H sing N N 200 LEU N H2 sing N N 201 LEU CA C sing N N 202 LEU CA CB sing N N 203 LEU CA HA sing N N 204 LEU C O doub N N 205 LEU C OXT sing N N 206 LEU CB CG sing N N 207 LEU CB HB2 sing N N 208 LEU CB HB3 sing N N 209 LEU CG CD1 sing N N 210 LEU CG CD2 sing N N 211 LEU CG HG sing N N 212 LEU CD1 HD11 sing N N 213 LEU CD1 HD12 sing N N 214 LEU CD1 HD13 sing N N 215 LEU CD2 HD21 sing N N 216 LEU CD2 HD22 sing N N 217 LEU CD2 HD23 sing N N 218 LEU OXT HXT sing N N 219 LYS N CA sing N N 220 LYS N H sing N N 221 LYS N H2 sing N N 222 LYS CA C sing N N 223 LYS CA CB sing N N 224 LYS CA HA sing N N 225 LYS C O doub N N 226 LYS C OXT sing N N 227 LYS CB CG sing N N 228 LYS CB HB2 sing N N 229 LYS CB HB3 sing N N 230 LYS CG CD sing N N 231 LYS CG HG2 sing N N 232 LYS CG HG3 sing N N 233 LYS CD CE sing N N 234 LYS CD HD2 sing N N 235 LYS CD HD3 sing N N 236 LYS CE NZ sing N N 237 LYS CE HE2 sing N N 238 LYS CE HE3 sing N N 239 LYS NZ HZ1 sing N N 240 LYS NZ HZ2 sing N N 241 LYS NZ HZ3 sing N N 242 LYS OXT HXT sing N N 243 MET N CA sing N N 244 MET N H sing N N 245 MET N H2 sing N N 246 MET CA C sing N N 247 MET CA CB sing N N 248 MET CA HA sing N N 249 MET C O doub N N 250 MET C OXT sing N N 251 MET CB CG sing N N 252 MET CB HB2 sing N N 253 MET CB HB3 sing N N 254 MET CG SD sing N N 255 MET CG HG2 sing N N 256 MET CG HG3 sing N N 257 MET SD CE sing N N 258 MET CE HE1 sing N N 259 MET CE HE2 sing N N 260 MET CE HE3 sing N N 261 MET OXT HXT sing N N 262 NHE "C3'" "C2'" sing N N 263 NHE "C3'" "C4'" sing N N 264 NHE "C3'" "H3'1" sing N N 265 NHE "C3'" "H3'2" sing N N 266 NHE "C2'" "C1'" sing N N 267 NHE "C2'" "H2'1" sing N N 268 NHE "C2'" "H2'2" sing N N 269 NHE "C1'" "C6'" sing N N 270 NHE "C1'" N sing N N 271 NHE "C1'" "HC'1" sing N N 272 NHE "C6'" "C5'" sing N N 273 NHE "C6'" "H6'1" sing N N 274 NHE "C6'" "H6'2" sing N N 275 NHE N C1 sing N N 276 NHE N HN sing N N 277 NHE C1 C2 sing N N 278 NHE C1 HC11 sing N N 279 NHE C1 HC12 sing N N 280 NHE C2 S sing N N 281 NHE C2 HC21 sing N N 282 NHE C2 HC22 sing N N 283 NHE S O1 doub N N 284 NHE S O2 doub N N 285 NHE S O3 sing N N 286 NHE O3 HO3 sing N N 287 NHE "C5'" "C4'" sing N N 288 NHE "C5'" "H5'1" sing N N 289 NHE "C5'" "H5'2" sing N N 290 NHE "C4'" "H4'1" sing N N 291 NHE "C4'" "H4'2" sing N N 292 PHE N CA sing N N 293 PHE N H sing N N 294 PHE N H2 sing N N 295 PHE CA C sing N N 296 PHE CA CB sing N N 297 PHE CA HA sing N N 298 PHE C O doub N N 299 PHE C OXT sing N N 300 PHE CB CG sing N N 301 PHE CB HB2 sing N N 302 PHE CB HB3 sing N N 303 PHE CG CD1 doub Y N 304 PHE CG CD2 sing Y N 305 PHE CD1 CE1 sing Y N 306 PHE CD1 HD1 sing N N 307 PHE CD2 CE2 doub Y N 308 PHE CD2 HD2 sing N N 309 PHE CE1 CZ doub Y N 310 PHE CE1 HE1 sing N N 311 PHE CE2 CZ sing Y N 312 PHE CE2 HE2 sing N N 313 PHE CZ HZ sing N N 314 PHE OXT HXT sing N N 315 PRO N CA sing N N 316 PRO N CD sing N N 317 PRO N H sing N N 318 PRO CA C sing N N 319 PRO CA CB sing N N 320 PRO CA HA sing N N 321 PRO C O doub N N 322 PRO C OXT sing N N 323 PRO CB CG sing N N 324 PRO CB HB2 sing N N 325 PRO CB HB3 sing N N 326 PRO CG CD sing N N 327 PRO CG HG2 sing N N 328 PRO CG HG3 sing N N 329 PRO CD HD2 sing N N 330 PRO CD HD3 sing N N 331 PRO OXT HXT sing N N 332 SER N CA sing N N 333 SER N H sing N N 334 SER N H2 sing N N 335 SER CA C sing N N 336 SER CA CB sing N N 337 SER CA HA sing N N 338 SER C O doub N N 339 SER C OXT sing N N 340 SER CB OG sing N N 341 SER CB HB2 sing N N 342 SER CB HB3 sing N N 343 SER OG HG sing N N 344 SER OXT HXT sing N N 345 THR N CA sing N N 346 THR N H sing N N 347 THR N H2 sing N N 348 THR CA C sing N N 349 THR CA CB sing N N 350 THR CA HA sing N N 351 THR C O doub N N 352 THR C OXT sing N N 353 THR CB OG1 sing N N 354 THR CB CG2 sing N N 355 THR CB HB sing N N 356 THR OG1 HG1 sing N N 357 THR CG2 HG21 sing N N 358 THR CG2 HG22 sing N N 359 THR CG2 HG23 sing N N 360 THR OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _atom_sites.entry_id 3GIB _atom_sites.fract_transf_matrix[1][1] 0.015030 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011241 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025230 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_