data_3GMF # _entry.id 3GMF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3GMF RCSB RCSB052042 WWPDB D_1000052042 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11216o _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GMF _pdbx_database_status.recvd_initial_deposition_date 2009-03-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Patskovsky, Y.' 1 ? 'Ramagopal, U.A.' 2 ? 'Toro, R.' 3 ? 'Morano, C.' 4 ? 'Freeman, J.' 5 ? 'Chang, S.' 6 ? 'Sauder, J.M.' 7 0000-0002-0254-4955 'Burley, S.K.' 8 0000-0002-2487-9713 'Almo, S.C.' 9 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 10 ? # _citation.id primary _citation.title 'Crystal structure of protein-disulfide isomerase from Novosphingobium aromaticivorans' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Patskovsky, Y.' 1 ? primary 'Ramagopal, U.A.' 2 ? primary 'Toro, R.' 3 ? primary 'Morano, C.' 4 ? primary 'Freeman, J.' 5 ? primary 'Chang, S.' 6 ? primary 'Sauder, J.M.' 7 ? primary 'Burley, S.K.' 8 0000-0002-2487-9713 primary 'Almo, S.C.' 9 ? # _cell.entry_id 3GMF _cell.length_a 101.526 _cell.length_b 101.526 _cell.length_c 58.413 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3GMF _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein-disulfide isomerase' 23019.154 1 ? ? 'UNP residues 45-238' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 3 water nat water 18.015 182 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSLADGHHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSRFF TLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEA INQYNVSGTPSFMIDGILLAGTHDWASLRPQILARLNEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLADGHHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSRFF TLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEA INQYNVSGTPSFMIDGILLAGTHDWASLRPQILARLNEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11216o # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 ALA n 1 5 ASP n 1 6 GLY n 1 7 HIS n 1 8 HIS n 1 9 LEU n 1 10 LEU n 1 11 GLY n 1 12 ASN n 1 13 PRO n 1 14 ALA n 1 15 ALA n 1 16 LYS n 1 17 LEU n 1 18 ARG n 1 19 LEU n 1 20 VAL n 1 21 GLU n 1 22 PHE n 1 23 VAL n 1 24 SER n 1 25 TYR n 1 26 THR n 1 27 CYS n 1 28 PRO n 1 29 HIS n 1 30 CYS n 1 31 SER n 1 32 HIS n 1 33 PHE n 1 34 GLU n 1 35 ILE n 1 36 GLU n 1 37 SER n 1 38 GLU n 1 39 GLY n 1 40 GLN n 1 41 LEU n 1 42 LYS n 1 43 ILE n 1 44 GLY n 1 45 MET n 1 46 VAL n 1 47 GLN n 1 48 PRO n 1 49 GLY n 1 50 LYS n 1 51 GLY n 1 52 ALA n 1 53 ILE n 1 54 GLU n 1 55 VAL n 1 56 ARG n 1 57 ASN n 1 58 PHE n 1 59 VAL n 1 60 ARG n 1 61 ASP n 1 62 PRO n 1 63 ILE n 1 64 ASP n 1 65 MET n 1 66 THR n 1 67 VAL n 1 68 ALA n 1 69 LEU n 1 70 ILE n 1 71 THR n 1 72 ASN n 1 73 CYS n 1 74 VAL n 1 75 PRO n 1 76 PRO n 1 77 SER n 1 78 ARG n 1 79 PHE n 1 80 PHE n 1 81 THR n 1 82 LEU n 1 83 HIS n 1 84 THR n 1 85 ALA n 1 86 PHE n 1 87 MET n 1 88 ARG n 1 89 SER n 1 90 GLN n 1 91 ALA n 1 92 GLN n 1 93 TRP n 1 94 ILE n 1 95 GLY n 1 96 PRO n 1 97 LEU n 1 98 ALA n 1 99 ASN n 1 100 SER n 1 101 THR n 1 102 GLU n 1 103 ALA n 1 104 GLN n 1 105 ARG n 1 106 GLN n 1 107 ARG n 1 108 TRP n 1 109 PHE n 1 110 ASN n 1 111 GLY n 1 112 THR n 1 113 PHE n 1 114 ALA n 1 115 THR n 1 116 ARG n 1 117 THR n 1 118 ARG n 1 119 ALA n 1 120 ILE n 1 121 ALA n 1 122 SER n 1 123 ASP n 1 124 PHE n 1 125 ARG n 1 126 PHE n 1 127 TYR n 1 128 ASP n 1 129 PHE n 1 130 MET n 1 131 ALA n 1 132 ALA n 1 133 ARG n 1 134 GLY n 1 135 MET n 1 136 ASP n 1 137 ARG n 1 138 SER n 1 139 THR n 1 140 LEU n 1 141 ASP n 1 142 ARG n 1 143 CYS n 1 144 LEU n 1 145 SER n 1 146 ASN n 1 147 GLU n 1 148 ALA n 1 149 LEU n 1 150 ALA n 1 151 LYS n 1 152 LYS n 1 153 LEU n 1 154 ALA n 1 155 ALA n 1 156 GLU n 1 157 THR n 1 158 ASP n 1 159 GLU n 1 160 ALA n 1 161 ILE n 1 162 ASN n 1 163 GLN n 1 164 TYR n 1 165 ASN n 1 166 VAL n 1 167 SER n 1 168 GLY n 1 169 THR n 1 170 PRO n 1 171 SER n 1 172 PHE n 1 173 MET n 1 174 ILE n 1 175 ASP n 1 176 GLY n 1 177 ILE n 1 178 LEU n 1 179 LEU n 1 180 ALA n 1 181 GLY n 1 182 THR n 1 183 HIS n 1 184 ASP n 1 185 TRP n 1 186 ALA n 1 187 SER n 1 188 LEU n 1 189 ARG n 1 190 PRO n 1 191 GLN n 1 192 ILE n 1 193 LEU n 1 194 ALA n 1 195 ARG n 1 196 LEU n 1 197 ASN n 1 198 GLU n 1 199 GLY n 1 200 HIS n 1 201 HIS n 1 202 HIS n 1 203 HIS n 1 204 HIS n 1 205 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Saro_0958 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 12444' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Novosphingobium aromaticivorans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 279238 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-CODON+RIL(STRATAGENE)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2G9S0_NOVAD _struct_ref.pdbx_db_accession Q2G9S0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADGHHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMTVALITNCVPPSRFFTLH TAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQ YNVSGTPSFMIDGILLAGTHDWASLRPQILARLN ; _struct_ref.pdbx_align_begin 45 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GMF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 197 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2G9S0 _struct_ref_seq.db_align_beg 45 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 45 _struct_ref_seq.pdbx_auth_seq_align_end 238 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GMF MET A 1 ? UNP Q2G9S0 ? ? 'expression tag' 42 1 1 3GMF SER A 2 ? UNP Q2G9S0 ? ? 'expression tag' 43 2 1 3GMF LEU A 3 ? UNP Q2G9S0 ? ? 'expression tag' 44 3 1 3GMF GLU A 198 ? UNP Q2G9S0 ? ? 'expression tag' 239 4 1 3GMF GLY A 199 ? UNP Q2G9S0 ? ? 'expression tag' 240 5 1 3GMF HIS A 200 ? UNP Q2G9S0 ? ? 'expression tag' 241 6 1 3GMF HIS A 201 ? UNP Q2G9S0 ? ? 'expression tag' 242 7 1 3GMF HIS A 202 ? UNP Q2G9S0 ? ? 'expression tag' 243 8 1 3GMF HIS A 203 ? UNP Q2G9S0 ? ? 'expression tag' 244 9 1 3GMF HIS A 204 ? UNP Q2G9S0 ? ? 'expression tag' 245 10 1 3GMF HIS A 205 ? UNP Q2G9S0 ? ? 'expression tag' 246 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3GMF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.1M Sodium acetate pH 4.5, 3M Sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-03-12 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 # _reflns.entry_id 3GMF _reflns.observed_criterion_sigma_I -5.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.77 _reflns.d_resolution_high 1.76 _reflns.number_obs 22299 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.062 _reflns.pdbx_netI_over_sigmaI 12.5 _reflns.B_iso_Wilson_estimate 29.524 _reflns.pdbx_redundancy 3.100 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.76 _reflns_shell.d_res_low 1.82 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.370 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 3.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3GMF _refine.ls_number_reflns_obs 21355 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.77 _refine.ls_d_res_high 1.76 _refine.ls_percent_reflns_obs 98.97 _refine.ls_R_factor_obs 0.18595 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18456 _refine.ls_R_factor_R_free 0.22908 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.2 _refine.ls_number_reflns_R_free 714 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 33.492 _refine.aniso_B[1][1] 0.08 _refine.aniso_B[2][2] 0.08 _refine.aniso_B[3][3] -0.12 _refine.aniso_B[1][2] 0.04 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.118 _refine.pdbx_overall_ESU_R_Free 0.119 _refine.overall_SU_ML 0.082 _refine.overall_SU_B 2.508 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1538 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 182 _refine_hist.number_atoms_total 1723 _refine_hist.d_res_high 1.76 _refine_hist.d_res_low 50.77 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1679 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.321 1.942 ? 2298 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.963 5.000 ? 229 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.047 22.683 ? 82 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.195 15.000 ? 293 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.165 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.088 0.200 ? 253 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1308 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.176 0.300 ? 798 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.500 ? 1161 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.190 0.500 ? 246 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.155 0.300 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.207 0.500 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.094 2.000 ? 1058 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 4.217 3.000 ? 1670 'X-RAY DIFFRACTION' ? r_scbond_it 5.206 3.000 ? 695 'X-RAY DIFFRACTION' ? r_scangle_it 7.202 5.000 ? 611 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.76 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 1590 _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.percent_reflns_obs 99.52 _refine_ls_shell.R_factor_R_free 0.310 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GMF _struct.title 'Crystal structure of protein-disulfide isomerase from Novosphingobium aromaticivorans' _struct.pdbx_descriptor 'Protein-disulfide isomerase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GMF _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;OXIDOREDUCTASE, DISULFIDE ISOMERASE, PSI-2, NYSGXRC, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, Isomerase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE ASSEMBLY OF THE BIOLOGICAL UNIT THAT IS SHOWN IN REMARK 350 IS PUTATIVE AT THE TIME OF DEPOSITION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 27 ? MET A 45 ? CYS A 68 MET A 86 1 ? 19 HELX_P HELX_P2 2 ASP A 61 ? VAL A 74 ? ASP A 102 VAL A 115 1 ? 14 HELX_P HELX_P3 3 PRO A 75 ? SER A 89 ? PRO A 116 SER A 130 1 ? 15 HELX_P HELX_P4 4 SER A 89 ? ILE A 94 ? SER A 130 ILE A 135 1 ? 6 HELX_P HELX_P5 5 ILE A 94 ? SER A 100 ? ILE A 135 SER A 141 1 ? 7 HELX_P HELX_P6 6 THR A 101 ? ARG A 107 ? THR A 142 ARG A 148 1 ? 7 HELX_P HELX_P7 7 THR A 112 ? PHE A 124 ? THR A 153 PHE A 165 1 ? 13 HELX_P HELX_P8 8 ARG A 125 ? ALA A 132 ? ARG A 166 ALA A 173 1 ? 8 HELX_P HELX_P9 9 ASP A 136 ? SER A 145 ? ASP A 177 SER A 186 1 ? 10 HELX_P HELX_P10 10 ASN A 146 ? ASN A 165 ? ASN A 187 ASN A 206 1 ? 20 HELX_P HELX_P11 11 ASP A 184 ? ASN A 197 ? ASP A 225 ASN A 238 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 73 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 143 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 114 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 184 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 169 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 210 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 170 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 211 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.70 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 7 ? LEU A 10 ? HIS A 48 LEU A 51 A 2 GLY A 51 ? ASN A 57 ? GLY A 92 ASN A 98 A 3 LEU A 17 ? VAL A 23 ? LEU A 58 VAL A 64 A 4 SER A 171 ? ILE A 174 ? SER A 212 ILE A 215 A 5 ILE A 177 ? LEU A 178 ? ILE A 218 LEU A 219 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 10 ? N LEU A 51 O ILE A 53 ? O ILE A 94 A 2 3 O GLU A 54 ? O GLU A 95 N LEU A 19 ? N LEU A 60 A 3 4 N PHE A 22 ? N PHE A 63 O SER A 171 ? O SER A 212 A 4 5 N ILE A 174 ? N ILE A 215 O ILE A 177 ? O ILE A 218 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 301 ? 5 'BINDING SITE FOR RESIDUE CL A 301' AC2 Software A CL 302 ? 6 'BINDING SITE FOR RESIDUE CL A 302' AC3 Software A CL 303 ? 3 'BINDING SITE FOR RESIDUE CL A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 101 ? THR A 142 . ? 8_545 ? 2 AC1 5 ASN A 162 ? ASN A 203 . ? 1_555 ? 3 AC1 5 GLN A 163 ? GLN A 204 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH A 420 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 470 . ? 1_555 ? 6 AC2 6 HIS A 32 ? HIS A 73 . ? 1_555 ? 7 AC2 6 PHE A 33 ? PHE A 74 . ? 1_555 ? 8 AC2 6 ASP A 184 ? ASP A 225 . ? 1_555 ? 9 AC2 6 TRP A 185 ? TRP A 226 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH A 414 . ? 1_555 ? 11 AC2 6 HOH E . ? HOH A 417 . ? 1_555 ? 12 AC3 3 ARG A 125 ? ARG A 166 . ? 1_555 ? 13 AC3 3 TYR A 127 ? TYR A 168 . ? 1_555 ? 14 AC3 3 ASP A 128 ? ASP A 169 . ? 1_555 ? # _database_PDB_matrix.entry_id 3GMF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GMF _atom_sites.fract_transf_matrix[1][1] 0.009850 _atom_sites.fract_transf_matrix[1][2] 0.005687 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011373 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017119 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 42 ? ? ? A . n A 1 2 SER 2 43 ? ? ? A . n A 1 3 LEU 3 44 44 LEU LEU A . n A 1 4 ALA 4 45 45 ALA ALA A . n A 1 5 ASP 5 46 46 ASP ASP A . n A 1 6 GLY 6 47 47 GLY GLY A . n A 1 7 HIS 7 48 48 HIS HIS A . n A 1 8 HIS 8 49 49 HIS HIS A . n A 1 9 LEU 9 50 50 LEU LEU A . n A 1 10 LEU 10 51 51 LEU LEU A . n A 1 11 GLY 11 52 52 GLY GLY A . n A 1 12 ASN 12 53 53 ASN ASN A . n A 1 13 PRO 13 54 54 PRO PRO A . n A 1 14 ALA 14 55 55 ALA ALA A . n A 1 15 ALA 15 56 56 ALA ALA A . n A 1 16 LYS 16 57 57 LYS LYS A . n A 1 17 LEU 17 58 58 LEU LEU A . n A 1 18 ARG 18 59 59 ARG ARG A . n A 1 19 LEU 19 60 60 LEU LEU A . n A 1 20 VAL 20 61 61 VAL VAL A . n A 1 21 GLU 21 62 62 GLU GLU A . n A 1 22 PHE 22 63 63 PHE PHE A . n A 1 23 VAL 23 64 64 VAL VAL A . n A 1 24 SER 24 65 65 SER SER A . n A 1 25 TYR 25 66 66 TYR TYR A . n A 1 26 THR 26 67 67 THR THR A . n A 1 27 CYS 27 68 68 CYS CYS A . n A 1 28 PRO 28 69 69 PRO PRO A . n A 1 29 HIS 29 70 70 HIS HIS A . n A 1 30 CYS 30 71 71 CYS CYS A . n A 1 31 SER 31 72 72 SER SER A . n A 1 32 HIS 32 73 73 HIS HIS A . n A 1 33 PHE 33 74 74 PHE PHE A . n A 1 34 GLU 34 75 75 GLU GLU A . n A 1 35 ILE 35 76 76 ILE ILE A . n A 1 36 GLU 36 77 77 GLU GLU A . n A 1 37 SER 37 78 78 SER SER A . n A 1 38 GLU 38 79 79 GLU GLU A . n A 1 39 GLY 39 80 80 GLY GLY A . n A 1 40 GLN 40 81 81 GLN GLN A . n A 1 41 LEU 41 82 82 LEU LEU A . n A 1 42 LYS 42 83 83 LYS LYS A . n A 1 43 ILE 43 84 84 ILE ILE A . n A 1 44 GLY 44 85 85 GLY GLY A . n A 1 45 MET 45 86 86 MET MET A . n A 1 46 VAL 46 87 87 VAL VAL A . n A 1 47 GLN 47 88 88 GLN GLN A . n A 1 48 PRO 48 89 89 PRO PRO A . n A 1 49 GLY 49 90 90 GLY GLY A . n A 1 50 LYS 50 91 91 LYS LYS A . n A 1 51 GLY 51 92 92 GLY GLY A . n A 1 52 ALA 52 93 93 ALA ALA A . n A 1 53 ILE 53 94 94 ILE ILE A . n A 1 54 GLU 54 95 95 GLU GLU A . n A 1 55 VAL 55 96 96 VAL VAL A . n A 1 56 ARG 56 97 97 ARG ARG A . n A 1 57 ASN 57 98 98 ASN ASN A . n A 1 58 PHE 58 99 99 PHE PHE A . n A 1 59 VAL 59 100 100 VAL VAL A . n A 1 60 ARG 60 101 101 ARG ARG A . n A 1 61 ASP 61 102 102 ASP ASP A . n A 1 62 PRO 62 103 103 PRO PRO A . n A 1 63 ILE 63 104 104 ILE ILE A . n A 1 64 ASP 64 105 105 ASP ASP A . n A 1 65 MET 65 106 106 MET MET A . n A 1 66 THR 66 107 107 THR THR A . n A 1 67 VAL 67 108 108 VAL VAL A . n A 1 68 ALA 68 109 109 ALA ALA A . n A 1 69 LEU 69 110 110 LEU LEU A . n A 1 70 ILE 70 111 111 ILE ILE A . n A 1 71 THR 71 112 112 THR THR A . n A 1 72 ASN 72 113 113 ASN ASN A . n A 1 73 CYS 73 114 114 CYS CYS A . n A 1 74 VAL 74 115 115 VAL VAL A . n A 1 75 PRO 75 116 116 PRO PRO A . n A 1 76 PRO 76 117 117 PRO PRO A . n A 1 77 SER 77 118 118 SER SER A . n A 1 78 ARG 78 119 119 ARG ARG A . n A 1 79 PHE 79 120 120 PHE PHE A . n A 1 80 PHE 80 121 121 PHE PHE A . n A 1 81 THR 81 122 122 THR THR A . n A 1 82 LEU 82 123 123 LEU LEU A . n A 1 83 HIS 83 124 124 HIS HIS A . n A 1 84 THR 84 125 125 THR THR A . n A 1 85 ALA 85 126 126 ALA ALA A . n A 1 86 PHE 86 127 127 PHE PHE A . n A 1 87 MET 87 128 128 MET MET A . n A 1 88 ARG 88 129 129 ARG ARG A . n A 1 89 SER 89 130 130 SER SER A . n A 1 90 GLN 90 131 131 GLN GLN A . n A 1 91 ALA 91 132 132 ALA ALA A . n A 1 92 GLN 92 133 133 GLN GLN A . n A 1 93 TRP 93 134 134 TRP TRP A . n A 1 94 ILE 94 135 135 ILE ILE A . n A 1 95 GLY 95 136 136 GLY GLY A . n A 1 96 PRO 96 137 137 PRO PRO A . n A 1 97 LEU 97 138 138 LEU LEU A . n A 1 98 ALA 98 139 139 ALA ALA A . n A 1 99 ASN 99 140 140 ASN ASN A . n A 1 100 SER 100 141 141 SER SER A . n A 1 101 THR 101 142 142 THR THR A . n A 1 102 GLU 102 143 143 GLU GLU A . n A 1 103 ALA 103 144 144 ALA ALA A . n A 1 104 GLN 104 145 145 GLN GLN A . n A 1 105 ARG 105 146 146 ARG ARG A . n A 1 106 GLN 106 147 147 GLN GLN A . n A 1 107 ARG 107 148 148 ARG ARG A . n A 1 108 TRP 108 149 149 TRP TRP A . n A 1 109 PHE 109 150 150 PHE PHE A . n A 1 110 ASN 110 151 151 ASN ASN A . n A 1 111 GLY 111 152 152 GLY GLY A . n A 1 112 THR 112 153 153 THR THR A . n A 1 113 PHE 113 154 154 PHE PHE A . n A 1 114 ALA 114 155 155 ALA ALA A . n A 1 115 THR 115 156 156 THR THR A . n A 1 116 ARG 116 157 157 ARG ARG A . n A 1 117 THR 117 158 158 THR THR A . n A 1 118 ARG 118 159 159 ARG ARG A . n A 1 119 ALA 119 160 160 ALA ALA A . n A 1 120 ILE 120 161 161 ILE ILE A . n A 1 121 ALA 121 162 162 ALA ALA A . n A 1 122 SER 122 163 163 SER SER A . n A 1 123 ASP 123 164 164 ASP ASP A . n A 1 124 PHE 124 165 165 PHE PHE A . n A 1 125 ARG 125 166 166 ARG ARG A . n A 1 126 PHE 126 167 167 PHE PHE A . n A 1 127 TYR 127 168 168 TYR TYR A . n A 1 128 ASP 128 169 169 ASP ASP A . n A 1 129 PHE 129 170 170 PHE PHE A . n A 1 130 MET 130 171 171 MET MET A . n A 1 131 ALA 131 172 172 ALA ALA A . n A 1 132 ALA 132 173 173 ALA ALA A . n A 1 133 ARG 133 174 174 ARG ARG A . n A 1 134 GLY 134 175 175 GLY GLY A . n A 1 135 MET 135 176 176 MET MET A . n A 1 136 ASP 136 177 177 ASP ASP A . n A 1 137 ARG 137 178 178 ARG ARG A . n A 1 138 SER 138 179 179 SER SER A . n A 1 139 THR 139 180 180 THR THR A . n A 1 140 LEU 140 181 181 LEU LEU A . n A 1 141 ASP 141 182 182 ASP ASP A . n A 1 142 ARG 142 183 183 ARG ARG A . n A 1 143 CYS 143 184 184 CYS CYS A . n A 1 144 LEU 144 185 185 LEU LEU A . n A 1 145 SER 145 186 186 SER SER A . n A 1 146 ASN 146 187 187 ASN ASN A . n A 1 147 GLU 147 188 188 GLU GLU A . n A 1 148 ALA 148 189 189 ALA ALA A . n A 1 149 LEU 149 190 190 LEU LEU A . n A 1 150 ALA 150 191 191 ALA ALA A . n A 1 151 LYS 151 192 192 LYS LYS A . n A 1 152 LYS 152 193 193 LYS LYS A . n A 1 153 LEU 153 194 194 LEU LEU A . n A 1 154 ALA 154 195 195 ALA ALA A . n A 1 155 ALA 155 196 196 ALA ALA A . n A 1 156 GLU 156 197 197 GLU GLU A . n A 1 157 THR 157 198 198 THR THR A . n A 1 158 ASP 158 199 199 ASP ASP A . n A 1 159 GLU 159 200 200 GLU GLU A . n A 1 160 ALA 160 201 201 ALA ALA A . n A 1 161 ILE 161 202 202 ILE ILE A . n A 1 162 ASN 162 203 203 ASN ASN A . n A 1 163 GLN 163 204 204 GLN GLN A . n A 1 164 TYR 164 205 205 TYR TYR A . n A 1 165 ASN 165 206 206 ASN ASN A . n A 1 166 VAL 166 207 207 VAL VAL A . n A 1 167 SER 167 208 208 SER SER A . n A 1 168 GLY 168 209 209 GLY GLY A . n A 1 169 THR 169 210 210 THR THR A . n A 1 170 PRO 170 211 211 PRO PRO A . n A 1 171 SER 171 212 212 SER SER A . n A 1 172 PHE 172 213 213 PHE PHE A . n A 1 173 MET 173 214 214 MET MET A . n A 1 174 ILE 174 215 215 ILE ILE A . n A 1 175 ASP 175 216 216 ASP ASP A . n A 1 176 GLY 176 217 217 GLY GLY A . n A 1 177 ILE 177 218 218 ILE ILE A . n A 1 178 LEU 178 219 219 LEU LEU A . n A 1 179 LEU 179 220 220 LEU LEU A . n A 1 180 ALA 180 221 221 ALA ALA A . n A 1 181 GLY 181 222 222 GLY GLY A . n A 1 182 THR 182 223 223 THR THR A . n A 1 183 HIS 183 224 224 HIS HIS A . n A 1 184 ASP 184 225 225 ASP ASP A . n A 1 185 TRP 185 226 226 TRP TRP A . n A 1 186 ALA 186 227 227 ALA ALA A . n A 1 187 SER 187 228 228 SER SER A . n A 1 188 LEU 188 229 229 LEU LEU A . n A 1 189 ARG 189 230 230 ARG ARG A . n A 1 190 PRO 190 231 231 PRO PRO A . n A 1 191 GLN 191 232 232 GLN GLN A . n A 1 192 ILE 192 233 233 ILE ILE A . n A 1 193 LEU 193 234 234 LEU LEU A . n A 1 194 ALA 194 235 235 ALA ALA A . n A 1 195 ARG 195 236 236 ARG ARG A . n A 1 196 LEU 196 237 237 LEU LEU A . n A 1 197 ASN 197 238 238 ASN ASN A . n A 1 198 GLU 198 239 239 GLU GLU A . n A 1 199 GLY 199 240 ? ? ? A . n A 1 200 HIS 200 241 ? ? ? A . n A 1 201 HIS 201 242 ? ? ? A . n A 1 202 HIS 202 243 ? ? ? A . n A 1 203 HIS 203 244 ? ? ? A . n A 1 204 HIS 204 245 ? ? ? A . n A 1 205 HIS 205 246 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 301 1 CL CL A . C 2 CL 1 302 2 CL CL A . D 2 CL 1 303 3 CL CL A . E 3 HOH 1 401 3 HOH HOH A . E 3 HOH 2 402 4 HOH HOH A . E 3 HOH 3 403 5 HOH HOH A . E 3 HOH 4 404 6 HOH HOH A . E 3 HOH 5 405 7 HOH HOH A . E 3 HOH 6 406 8 HOH HOH A . E 3 HOH 7 407 9 HOH HOH A . E 3 HOH 8 408 10 HOH HOH A . E 3 HOH 9 409 12 HOH HOH A . E 3 HOH 10 410 14 HOH HOH A . E 3 HOH 11 411 15 HOH HOH A . E 3 HOH 12 412 16 HOH HOH A . E 3 HOH 13 413 17 HOH HOH A . E 3 HOH 14 414 18 HOH HOH A . E 3 HOH 15 415 19 HOH HOH A . E 3 HOH 16 416 20 HOH HOH A . E 3 HOH 17 417 21 HOH HOH A . E 3 HOH 18 418 22 HOH HOH A . E 3 HOH 19 419 23 HOH HOH A . E 3 HOH 20 420 24 HOH HOH A . E 3 HOH 21 421 25 HOH HOH A . E 3 HOH 22 422 26 HOH HOH A . E 3 HOH 23 423 28 HOH HOH A . E 3 HOH 24 424 29 HOH HOH A . E 3 HOH 25 425 30 HOH HOH A . E 3 HOH 26 426 32 HOH HOH A . E 3 HOH 27 427 34 HOH HOH A . E 3 HOH 28 428 35 HOH HOH A . E 3 HOH 29 429 36 HOH HOH A . E 3 HOH 30 430 37 HOH HOH A . E 3 HOH 31 431 38 HOH HOH A . E 3 HOH 32 432 39 HOH HOH A . E 3 HOH 33 433 40 HOH HOH A . E 3 HOH 34 434 41 HOH HOH A . E 3 HOH 35 435 42 HOH HOH A . E 3 HOH 36 436 43 HOH HOH A . E 3 HOH 37 437 44 HOH HOH A . E 3 HOH 38 438 45 HOH HOH A . E 3 HOH 39 439 46 HOH HOH A . E 3 HOH 40 440 47 HOH HOH A . E 3 HOH 41 441 48 HOH HOH A . E 3 HOH 42 442 49 HOH HOH A . E 3 HOH 43 443 50 HOH HOH A . E 3 HOH 44 444 51 HOH HOH A . E 3 HOH 45 445 52 HOH HOH A . E 3 HOH 46 446 53 HOH HOH A . E 3 HOH 47 447 54 HOH HOH A . E 3 HOH 48 448 55 HOH HOH A . E 3 HOH 49 449 56 HOH HOH A . E 3 HOH 50 450 57 HOH HOH A . E 3 HOH 51 451 58 HOH HOH A . E 3 HOH 52 452 59 HOH HOH A . E 3 HOH 53 453 60 HOH HOH A . E 3 HOH 54 454 61 HOH HOH A . E 3 HOH 55 455 62 HOH HOH A . E 3 HOH 56 456 63 HOH HOH A . E 3 HOH 57 457 64 HOH HOH A . E 3 HOH 58 458 65 HOH HOH A . E 3 HOH 59 459 66 HOH HOH A . E 3 HOH 60 460 67 HOH HOH A . E 3 HOH 61 461 68 HOH HOH A . E 3 HOH 62 462 69 HOH HOH A . E 3 HOH 63 463 70 HOH HOH A . E 3 HOH 64 464 77 HOH HOH A . E 3 HOH 65 465 79 HOH HOH A . E 3 HOH 66 466 80 HOH HOH A . E 3 HOH 67 467 81 HOH HOH A . E 3 HOH 68 468 82 HOH HOH A . E 3 HOH 69 469 83 HOH HOH A . E 3 HOH 70 470 84 HOH HOH A . E 3 HOH 71 471 85 HOH HOH A . E 3 HOH 72 472 87 HOH HOH A . E 3 HOH 73 473 88 HOH HOH A . E 3 HOH 74 474 89 HOH HOH A . E 3 HOH 75 475 90 HOH HOH A . E 3 HOH 76 476 91 HOH HOH A . E 3 HOH 77 477 92 HOH HOH A . E 3 HOH 78 478 94 HOH HOH A . E 3 HOH 79 479 95 HOH HOH A . E 3 HOH 80 480 96 HOH HOH A . E 3 HOH 81 481 97 HOH HOH A . E 3 HOH 82 482 98 HOH HOH A . E 3 HOH 83 483 99 HOH HOH A . E 3 HOH 84 484 100 HOH HOH A . E 3 HOH 85 485 102 HOH HOH A . E 3 HOH 86 486 103 HOH HOH A . E 3 HOH 87 487 104 HOH HOH A . E 3 HOH 88 488 105 HOH HOH A . E 3 HOH 89 489 106 HOH HOH A . E 3 HOH 90 490 107 HOH HOH A . E 3 HOH 91 491 108 HOH HOH A . E 3 HOH 92 492 109 HOH HOH A . E 3 HOH 93 493 110 HOH HOH A . E 3 HOH 94 494 111 HOH HOH A . E 3 HOH 95 495 112 HOH HOH A . E 3 HOH 96 496 113 HOH HOH A . E 3 HOH 97 497 114 HOH HOH A . E 3 HOH 98 498 115 HOH HOH A . E 3 HOH 99 499 116 HOH HOH A . E 3 HOH 100 500 117 HOH HOH A . E 3 HOH 101 501 118 HOH HOH A . E 3 HOH 102 502 119 HOH HOH A . E 3 HOH 103 503 120 HOH HOH A . E 3 HOH 104 504 121 HOH HOH A . E 3 HOH 105 505 122 HOH HOH A . E 3 HOH 106 506 123 HOH HOH A . E 3 HOH 107 507 124 HOH HOH A . E 3 HOH 108 508 125 HOH HOH A . E 3 HOH 109 509 126 HOH HOH A . E 3 HOH 110 510 127 HOH HOH A . E 3 HOH 111 511 128 HOH HOH A . E 3 HOH 112 512 129 HOH HOH A . E 3 HOH 113 513 131 HOH HOH A . E 3 HOH 114 514 132 HOH HOH A . E 3 HOH 115 515 133 HOH HOH A . E 3 HOH 116 516 134 HOH HOH A . E 3 HOH 117 517 135 HOH HOH A . E 3 HOH 118 518 139 HOH HOH A . E 3 HOH 119 519 140 HOH HOH A . E 3 HOH 120 520 141 HOH HOH A . E 3 HOH 121 521 142 HOH HOH A . E 3 HOH 122 522 143 HOH HOH A . E 3 HOH 123 523 145 HOH HOH A . E 3 HOH 124 524 146 HOH HOH A . E 3 HOH 125 525 148 HOH HOH A . E 3 HOH 126 526 149 HOH HOH A . E 3 HOH 127 527 150 HOH HOH A . E 3 HOH 128 528 151 HOH HOH A . E 3 HOH 129 529 152 HOH HOH A . E 3 HOH 130 530 153 HOH HOH A . E 3 HOH 131 531 154 HOH HOH A . E 3 HOH 132 532 155 HOH HOH A . E 3 HOH 133 533 156 HOH HOH A . E 3 HOH 134 534 157 HOH HOH A . E 3 HOH 135 535 158 HOH HOH A . E 3 HOH 136 536 159 HOH HOH A . E 3 HOH 137 537 160 HOH HOH A . E 3 HOH 138 538 161 HOH HOH A . E 3 HOH 139 539 162 HOH HOH A . E 3 HOH 140 540 164 HOH HOH A . E 3 HOH 141 541 165 HOH HOH A . E 3 HOH 142 542 166 HOH HOH A . E 3 HOH 143 543 167 HOH HOH A . E 3 HOH 144 544 168 HOH HOH A . E 3 HOH 145 545 169 HOH HOH A . E 3 HOH 146 546 171 HOH HOH A . E 3 HOH 147 547 172 HOH HOH A . E 3 HOH 148 548 174 HOH HOH A . E 3 HOH 149 549 177 HOH HOH A . E 3 HOH 150 550 178 HOH HOH A . E 3 HOH 151 551 179 HOH HOH A . E 3 HOH 152 552 180 HOH HOH A . E 3 HOH 153 553 181 HOH HOH A . E 3 HOH 154 554 182 HOH HOH A . E 3 HOH 155 555 183 HOH HOH A . E 3 HOH 156 556 185 HOH HOH A . E 3 HOH 157 557 186 HOH HOH A . E 3 HOH 158 558 187 HOH HOH A . E 3 HOH 159 559 188 HOH HOH A . E 3 HOH 160 560 189 HOH HOH A . E 3 HOH 161 561 191 HOH HOH A . E 3 HOH 162 562 192 HOH HOH A . E 3 HOH 163 563 193 HOH HOH A . E 3 HOH 164 564 194 HOH HOH A . E 3 HOH 165 565 195 HOH HOH A . E 3 HOH 166 566 196 HOH HOH A . E 3 HOH 167 567 197 HOH HOH A . E 3 HOH 168 568 198 HOH HOH A . E 3 HOH 169 569 199 HOH HOH A . E 3 HOH 170 570 200 HOH HOH A . E 3 HOH 171 571 201 HOH HOH A . E 3 HOH 172 572 202 HOH HOH A . E 3 HOH 173 573 203 HOH HOH A . E 3 HOH 174 574 204 HOH HOH A . E 3 HOH 175 575 205 HOH HOH A . E 3 HOH 176 576 206 HOH HOH A . E 3 HOH 177 577 207 HOH HOH A . E 3 HOH 178 578 208 HOH HOH A . E 3 HOH 179 579 209 HOH HOH A . E 3 HOH 180 580 210 HOH HOH A . E 3 HOH 181 581 211 HOH HOH A . E 3 HOH 182 582 212 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 547 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-11-21 4 'Structure model' 1 3 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' audit_author 3 4 'Structure model' citation_author 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 4 'Structure model' '_audit_author.identifier_ORCID' 3 4 'Structure model' '_citation_author.identifier_ORCID' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SHELXD phasing . ? 2 REFMAC refinement 5.3.0034 ? 3 DENZO 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 86 ? ? -132.39 -50.14 2 1 SER A 208 ? ? -126.46 -68.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 42 ? A MET 1 2 1 Y 1 A SER 43 ? A SER 2 3 1 Y 1 A GLY 240 ? A GLY 199 4 1 Y 1 A HIS 241 ? A HIS 200 5 1 Y 1 A HIS 242 ? A HIS 201 6 1 Y 1 A HIS 243 ? A HIS 202 7 1 Y 1 A HIS 244 ? A HIS 203 8 1 Y 1 A HIS 245 ? A HIS 204 9 1 Y 1 A HIS 246 ? A HIS 205 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #