data_3GYP # _entry.id 3GYP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GYP pdb_00003gyp 10.2210/pdb3gyp/pdb RCSB RCSB052472 ? ? WWPDB D_1000052472 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3GYO _pdbx_database_related.details 'searching model for MOLREP' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3GYP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-04-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, Y.' 1 'Huang, H.' 2 'Shi, Y.' 3 'Teng, M.' 4 # _citation.id primary _citation.title 'Structural analysis of Rtt106p reveals a DNA-binding role required for heterochromatin silencing' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 4251 _citation.page_last 4262 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20007951 _citation.pdbx_database_id_DOI 10.1074/jbc.M109.055996 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, Y.' 1 ? primary 'Huang, H.' 2 ? primary 'Zhou, B.O.' 3 ? primary 'Wang, S.S.' 4 ? primary 'Hu, Y.' 5 ? primary 'Li, X.' 6 ? primary 'Liu, J.' 7 ? primary 'Zang, J.' 8 ? primary 'Niu, L.' 9 ? primary 'Wu, J.' 10 ? primary 'Zhou, J.Q.' 11 ? primary 'Teng, M.' 12 ? primary 'Shi, Y.' 13 ? # _cell.length_a 46.417 _cell.length_b 54.006 _cell.length_c 109.510 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3GYP _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3GYP _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone chaperone RTT106' 29807.162 1 ? ? 'residues in UNP 65-320' ? 2 non-polymer syn BETA-MERCAPTOETHANOL 78.133 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 53 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Regulator of Ty1 transposition protein 106' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSPHMDEISETNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIY LFMTYTSCEDNKFSEPVVMTLNKENTLNQFKNLGLLDSNVTDFEKCVEYIRKQAILTGFKISNPFVNSTLVDTDAEKINS FHLQCHRGTKEGTLYFLPDHIIFGFKKPILLFDASDIESITYSSITRLTFNASLVTKDGEKYEFSMTDQTEYAKIDDYVK RKQMKDKSMSEELKAKSKSKG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPHMDEISETNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIY LFMTYTSCEDNKFSEPVVMTLNKENTLNQFKNLGLLDSNVTDFEKCVEYIRKQAILTGFKISNPFVNSTLVDTDAEKINS FHLQCHRGTKEGTLYFLPDHIIFGFKKPILLFDASDIESITYSSITRLTFNASLVTKDGEKYEFSMTDQTEYAKIDDYVK RKQMKDKSMSEELKAKSKSKG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 HIS n 1 5 MET n 1 6 ASP n 1 7 GLU n 1 8 ILE n 1 9 SER n 1 10 GLU n 1 11 THR n 1 12 ASN n 1 13 THR n 1 14 ILE n 1 15 PHE n 1 16 LYS n 1 17 LEU n 1 18 GLU n 1 19 GLY n 1 20 VAL n 1 21 SER n 1 22 VAL n 1 23 LEU n 1 24 SER n 1 25 PRO n 1 26 LEU n 1 27 ARG n 1 28 LYS n 1 29 LYS n 1 30 LEU n 1 31 ASP n 1 32 LEU n 1 33 VAL n 1 34 PHE n 1 35 TYR n 1 36 LEU n 1 37 SER n 1 38 ASN n 1 39 VAL n 1 40 ASP n 1 41 GLY n 1 42 SER n 1 43 PRO n 1 44 VAL n 1 45 ILE n 1 46 THR n 1 47 LEU n 1 48 LEU n 1 49 LYS n 1 50 GLY n 1 51 ASN n 1 52 ASP n 1 53 ARG n 1 54 GLU n 1 55 LEU n 1 56 SER n 1 57 ILE n 1 58 TYR n 1 59 GLN n 1 60 LEU n 1 61 ASN n 1 62 LYS n 1 63 ASN n 1 64 ILE n 1 65 LYS n 1 66 MET n 1 67 ALA n 1 68 SER n 1 69 PHE n 1 70 LEU n 1 71 PRO n 1 72 VAL n 1 73 PRO n 1 74 GLU n 1 75 LYS n 1 76 PRO n 1 77 ASN n 1 78 LEU n 1 79 ILE n 1 80 TYR n 1 81 LEU n 1 82 PHE n 1 83 MET n 1 84 THR n 1 85 TYR n 1 86 THR n 1 87 SER n 1 88 CYS n 1 89 GLU n 1 90 ASP n 1 91 ASN n 1 92 LYS n 1 93 PHE n 1 94 SER n 1 95 GLU n 1 96 PRO n 1 97 VAL n 1 98 VAL n 1 99 MET n 1 100 THR n 1 101 LEU n 1 102 ASN n 1 103 LYS n 1 104 GLU n 1 105 ASN n 1 106 THR n 1 107 LEU n 1 108 ASN n 1 109 GLN n 1 110 PHE n 1 111 LYS n 1 112 ASN n 1 113 LEU n 1 114 GLY n 1 115 LEU n 1 116 LEU n 1 117 ASP n 1 118 SER n 1 119 ASN n 1 120 VAL n 1 121 THR n 1 122 ASP n 1 123 PHE n 1 124 GLU n 1 125 LYS n 1 126 CYS n 1 127 VAL n 1 128 GLU n 1 129 TYR n 1 130 ILE n 1 131 ARG n 1 132 LYS n 1 133 GLN n 1 134 ALA n 1 135 ILE n 1 136 LEU n 1 137 THR n 1 138 GLY n 1 139 PHE n 1 140 LYS n 1 141 ILE n 1 142 SER n 1 143 ASN n 1 144 PRO n 1 145 PHE n 1 146 VAL n 1 147 ASN n 1 148 SER n 1 149 THR n 1 150 LEU n 1 151 VAL n 1 152 ASP n 1 153 THR n 1 154 ASP n 1 155 ALA n 1 156 GLU n 1 157 LYS n 1 158 ILE n 1 159 ASN n 1 160 SER n 1 161 PHE n 1 162 HIS n 1 163 LEU n 1 164 GLN n 1 165 CYS n 1 166 HIS n 1 167 ARG n 1 168 GLY n 1 169 THR n 1 170 LYS n 1 171 GLU n 1 172 GLY n 1 173 THR n 1 174 LEU n 1 175 TYR n 1 176 PHE n 1 177 LEU n 1 178 PRO n 1 179 ASP n 1 180 HIS n 1 181 ILE n 1 182 ILE n 1 183 PHE n 1 184 GLY n 1 185 PHE n 1 186 LYS n 1 187 LYS n 1 188 PRO n 1 189 ILE n 1 190 LEU n 1 191 LEU n 1 192 PHE n 1 193 ASP n 1 194 ALA n 1 195 SER n 1 196 ASP n 1 197 ILE n 1 198 GLU n 1 199 SER n 1 200 ILE n 1 201 THR n 1 202 TYR n 1 203 SER n 1 204 SER n 1 205 ILE n 1 206 THR n 1 207 ARG n 1 208 LEU n 1 209 THR n 1 210 PHE n 1 211 ASN n 1 212 ALA n 1 213 SER n 1 214 LEU n 1 215 VAL n 1 216 THR n 1 217 LYS n 1 218 ASP n 1 219 GLY n 1 220 GLU n 1 221 LYS n 1 222 TYR n 1 223 GLU n 1 224 PHE n 1 225 SER n 1 226 MET n 1 227 THR n 1 228 ASP n 1 229 GLN n 1 230 THR n 1 231 GLU n 1 232 TYR n 1 233 ALA n 1 234 LYS n 1 235 ILE n 1 236 ASP n 1 237 ASP n 1 238 TYR n 1 239 VAL n 1 240 LYS n 1 241 ARG n 1 242 LYS n 1 243 GLN n 1 244 MET n 1 245 LYS n 1 246 ASP n 1 247 LYS n 1 248 SER n 1 249 MET n 1 250 SER n 1 251 GLU n 1 252 GLU n 1 253 LEU n 1 254 LYS n 1 255 ALA n 1 256 LYS n 1 257 SER n 1 258 LYS n 1 259 SER n 1 260 LYS n 1 261 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name yeast _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene RTT106 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RT106_YEAST _struct_ref.pdbx_db_accession P40161 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DEISETNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFMTY TSCEDNKFSEPVVMTLNKENTLNQFKNLGLLDSNVTDFEKCVEYIRKQAILTGFKISNPFVNSTLVDTDAEKINSFHLQC HRGTKEGTLYFLPDHIIFGFKKPILLFDASDIESITYSSITRLTFNASLVTKDGEKYEFSMIDQTEYAKIDDYVKRKQMK DKSMSEELKAKSKSKG ; _struct_ref.pdbx_align_begin 65 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3GYP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 261 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P40161 _struct_ref_seq.db_align_beg 65 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 320 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6 _struct_ref_seq.pdbx_auth_seq_align_end 261 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3GYP GLY A 1 ? UNP P40161 ? ? 'expression tag' 1 1 1 3GYP SER A 2 ? UNP P40161 ? ? 'expression tag' 2 2 1 3GYP PRO A 3 ? UNP P40161 ? ? 'expression tag' 3 3 1 3GYP HIS A 4 ? UNP P40161 ? ? 'expression tag' 4 4 1 3GYP MET A 5 ? UNP P40161 ? ? 'expression tag' 5 5 1 3GYP THR A 227 ? UNP P40161 ILE 286 'engineered mutation' 227 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3GYP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.510 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 46.52 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '18%w/v PEG 4000, 100mM NaAc, 1%v/v jeffamine ED-2001, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 285K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2009-01-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BSRF BEAMLINE 3W1A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_synchrotron_site BSRF _diffrn_source.pdbx_synchrotron_beamline 3W1A # _reflns.entry_id 3GYP _reflns.d_resolution_high 2.400 _reflns.d_resolution_low 20.000 _reflns.number_obs 10353 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_netI_over_sigmaI 20.117 _reflns.pdbx_chi_squared 0.780 _reflns.pdbx_redundancy 6.000 _reflns.percent_possible_obs 92.600 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.40 2.51 ? ? ? 0.257 ? ? 0.597 2.80 ? 821 59.90 1 1 2.51 2.64 ? ? ? 0.248 ? ? 0.584 3.80 ? 1130 82.40 2 1 2.64 2.81 ? ? ? 0.214 ? ? 0.595 5.50 ? 1324 97.20 3 1 2.81 3.02 ? ? ? 0.156 ? ? 0.632 6.70 ? 1365 100.00 4 1 3.02 3.32 ? ? ? 0.101 ? ? 0.763 7.10 ? 1403 100.00 5 1 3.32 3.80 ? ? ? 0.076 ? ? 0.837 7.10 ? 1389 100.00 6 1 3.80 4.78 ? ? ? 0.063 ? ? 0.930 7.00 ? 1420 100.00 7 1 4.78 20.00 ? ? ? 0.058 ? ? 0.964 6.60 ? 1501 99.90 8 1 # _refine.entry_id 3GYP _refine.ls_d_res_high 2.406 _refine.ls_d_res_low 19.810 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 92.110 _refine.ls_number_reflns_obs 10311 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_R_work 0.218 _refine.ls_wR_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.274 _refine.ls_wR_factor_R_free 0.264 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 490 _refine.B_iso_mean 42.323 _refine.aniso_B[1][1] -1.940 _refine.aniso_B[2][2] 0.480 _refine.aniso_B[3][3] 1.450 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.905 _refine.overall_SU_R_Cruickshank_DPI 0.455 _refine.overall_SU_R_free 0.295 _refine.pdbx_overall_ESU_R 0.455 _refine.pdbx_overall_ESU_R_Free 0.295 _refine.overall_SU_ML 0.234 _refine.overall_SU_B 20.169 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.775 _refine.B_iso_max 75.95 _refine.B_iso_min 24.92 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1743 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 1801 _refine_hist.d_res_high 2.406 _refine_hist.d_res_low 19.810 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1781 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2415 1.593 1.970 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 223 10.996 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 74 37.950 25.135 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 296 22.125 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 25.949 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 285 0.113 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1318 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 721 0.223 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1207 0.305 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 69 0.129 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 26 0.256 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 1 0.229 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1143 0.530 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1821 0.793 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 703 1.417 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 594 2.075 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.406 _refine_ls_shell.d_res_low 2.468 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 50.920 _refine_ls_shell.number_reflns_R_work 399 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.289 _refine_ls_shell.R_factor_R_free 0.494 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 415 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GYP _struct.title Rtt106p _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GYP _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text 'histone chaperone, Chaperone, Chromosomal protein, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Transposition' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 9 ? THR A 11 ? SER A 9 THR A 11 5 ? 3 HELX_P HELX_P2 2 GLN A 59 ? ASN A 63 ? GLN A 59 ASN A 63 1 ? 5 HELX_P HELX_P3 3 LYS A 103 ? LEU A 113 ? LYS A 103 LEU A 113 1 ? 11 HELX_P HELX_P4 4 PHE A 123 ? GLY A 138 ? PHE A 123 GLY A 138 1 ? 16 HELX_P HELX_P5 5 GLU A 231 ? GLN A 243 ? GLU A 231 GLN A 243 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 24 A . ? SER 24 A PRO 25 A ? PRO 25 A 1 7.34 2 GLY 184 A . ? GLY 184 A PHE 185 A ? PHE 185 A 1 3.02 3 LYS 187 A . ? LYS 187 A PRO 188 A ? PRO 188 A 1 -1.74 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 4 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 52 ? ILE A 57 ? ASP A 52 ILE A 57 A 2 PRO A 43 ? LYS A 49 ? PRO A 43 LYS A 49 A 3 LYS A 28 ? LEU A 36 ? LYS A 28 LEU A 36 A 4 THR A 13 ? SER A 24 ? THR A 13 SER A 24 A 5 GLU A 95 ? ASN A 102 ? GLU A 95 ASN A 102 A 6 LEU A 78 ? TYR A 85 ? LEU A 78 TYR A 85 A 7 ILE A 64 ? PRO A 71 ? ILE A 64 PRO A 71 B 1 PHE A 161 ? ARG A 167 ? PHE A 161 ARG A 167 B 2 LYS A 170 ? PHE A 176 ? LYS A 170 PHE A 176 B 3 HIS A 180 ? GLY A 184 ? HIS A 180 GLY A 184 B 4 LEU A 190 ? ASP A 193 ? LEU A 190 ASP A 193 C 1 ILE A 197 ? SER A 204 ? ILE A 197 SER A 204 C 2 THR A 209 ? THR A 216 ? THR A 209 THR A 216 C 3 LYS A 221 ? ASP A 228 ? LYS A 221 ASP A 228 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 54 ? O GLU A 54 N LEU A 47 ? N LEU A 47 A 2 3 O THR A 46 ? O THR A 46 N VAL A 33 ? N VAL A 33 A 3 4 O LEU A 32 ? O LEU A 32 N LEU A 17 ? N LEU A 17 A 4 5 N LEU A 23 ? N LEU A 23 O VAL A 98 ? O VAL A 98 A 5 6 O LEU A 101 ? O LEU A 101 N ILE A 79 ? N ILE A 79 A 6 7 O TYR A 80 ? O TYR A 80 N LEU A 70 ? N LEU A 70 B 1 2 N PHE A 161 ? N PHE A 161 O PHE A 176 ? O PHE A 176 B 2 3 N THR A 173 ? N THR A 173 O GLY A 184 ? O GLY A 184 B 3 4 N ILE A 181 ? N ILE A 181 O PHE A 192 ? O PHE A 192 C 1 2 N SER A 203 ? N SER A 203 O ASN A 211 ? O ASN A 211 C 2 3 N ALA A 212 ? N ALA A 212 O PHE A 224 ? O PHE A 224 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BME 262 ? 6 'BINDING SITE FOR RESIDUE BME A 262' AC2 Software A CL 263 ? 3 'BINDING SITE FOR RESIDUE CL A 263' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 24 ? SER A 24 . ? 1_555 ? 2 AC1 6 PHE A 185 ? PHE A 185 . ? 1_555 ? 3 AC1 6 LYS A 186 ? LYS A 186 . ? 1_555 ? 4 AC1 6 LYS A 187 ? LYS A 187 . ? 1_555 ? 5 AC1 6 ILE A 189 ? ILE A 189 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 265 . ? 1_555 ? 7 AC2 3 LEU A 177 ? LEU A 177 . ? 1_555 ? 8 AC2 3 ASP A 179 ? ASP A 179 . ? 1_555 ? 9 AC2 3 HIS A 180 ? HIS A 180 . ? 1_555 ? # _atom_sites.entry_id 3GYP _atom_sites.fract_transf_matrix[1][1] 0.021544 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018516 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009132 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 PRO 3 3 ? ? ? A . n A 1 4 HIS 4 4 ? ? ? A . n A 1 5 MET 5 5 ? ? ? A . n A 1 6 ASP 6 6 ? ? ? A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ASN 38 38 38 ASN ASN A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 MET 66 66 66 MET MET A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 MET 83 83 83 MET MET A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 MET 99 99 99 MET MET A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 CYS 126 126 126 CYS CYS A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 ASN 143 143 143 ASN ASN A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 ASN 147 147 ? ? ? A . n A 1 148 SER 148 148 ? ? ? A . n A 1 149 THR 149 149 ? ? ? A . n A 1 150 LEU 150 150 ? ? ? A . n A 1 151 VAL 151 151 ? ? ? A . n A 1 152 ASP 152 152 ? ? ? A . n A 1 153 THR 153 153 ? ? ? A . n A 1 154 ASP 154 154 ? ? ? A . n A 1 155 ALA 155 155 ? ? ? A . n A 1 156 GLU 156 156 ? ? ? A . n A 1 157 LYS 157 157 ? ? ? A . n A 1 158 ILE 158 158 ? ? ? A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 SER 160 160 160 SER SER A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 HIS 162 162 162 HIS HIS A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 GLN 164 164 164 GLN GLN A . n A 1 165 CYS 165 165 165 CYS CYS A . n A 1 166 HIS 166 166 166 HIS HIS A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 TYR 175 175 175 TYR TYR A . n A 1 176 PHE 176 176 176 PHE PHE A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 HIS 180 180 180 HIS HIS A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 PHE 183 183 183 PHE PHE A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 PHE 185 185 185 PHE PHE A . n A 1 186 LYS 186 186 186 LYS LYS A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 PHE 192 192 192 PHE PHE A . n A 1 193 ASP 193 193 193 ASP ASP A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 SER 195 195 195 SER SER A . n A 1 196 ASP 196 196 196 ASP ASP A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 GLU 198 198 198 GLU GLU A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 ILE 200 200 200 ILE ILE A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 TYR 202 202 202 TYR TYR A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 ILE 205 205 205 ILE ILE A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 ARG 207 207 207 ARG ARG A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 THR 209 209 209 THR THR A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 ASN 211 211 211 ASN ASN A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 SER 213 213 213 SER SER A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 VAL 215 215 215 VAL VAL A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 ASP 218 218 218 ASP ASP A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 GLU 223 223 223 GLU GLU A . n A 1 224 PHE 224 224 224 PHE PHE A . n A 1 225 SER 225 225 225 SER SER A . n A 1 226 MET 226 226 226 MET MET A . n A 1 227 THR 227 227 227 THR THR A . n A 1 228 ASP 228 228 228 ASP ASP A . n A 1 229 GLN 229 229 229 GLN GLN A . n A 1 230 THR 230 230 230 THR THR A . n A 1 231 GLU 231 231 231 GLU GLU A . n A 1 232 TYR 232 232 232 TYR TYR A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 LYS 234 234 234 LYS LYS A . n A 1 235 ILE 235 235 235 ILE ILE A . n A 1 236 ASP 236 236 236 ASP ASP A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 TYR 238 238 238 TYR TYR A . n A 1 239 VAL 239 239 239 VAL VAL A . n A 1 240 LYS 240 240 240 LYS LYS A . n A 1 241 ARG 241 241 241 ARG ARG A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 GLN 243 243 243 GLN GLN A . n A 1 244 MET 244 244 ? ? ? A . n A 1 245 LYS 245 245 ? ? ? A . n A 1 246 ASP 246 246 ? ? ? A . n A 1 247 LYS 247 247 ? ? ? A . n A 1 248 SER 248 248 ? ? ? A . n A 1 249 MET 249 249 ? ? ? A . n A 1 250 SER 250 250 ? ? ? A . n A 1 251 GLU 251 251 ? ? ? A . n A 1 252 GLU 252 252 ? ? ? A . n A 1 253 LEU 253 253 ? ? ? A . n A 1 254 LYS 254 254 ? ? ? A . n A 1 255 ALA 255 255 ? ? ? A . n A 1 256 LYS 256 256 ? ? ? A . n A 1 257 SER 257 257 ? ? ? A . n A 1 258 LYS 258 258 ? ? ? A . n A 1 259 SER 259 259 ? ? ? A . n A 1 260 LYS 260 260 ? ? ? A . n A 1 261 GLY 261 261 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BME 1 262 54 BME BME A . C 3 CL 1 263 55 CL CL A . D 4 HOH 1 264 1 HOH HOH A . D 4 HOH 2 265 2 HOH HOH A . D 4 HOH 3 266 3 HOH HOH A . D 4 HOH 4 267 4 HOH HOH A . D 4 HOH 5 268 5 HOH HOH A . D 4 HOH 6 269 6 HOH HOH A . D 4 HOH 7 270 7 HOH HOH A . D 4 HOH 8 271 8 HOH HOH A . D 4 HOH 9 272 9 HOH HOH A . D 4 HOH 10 273 10 HOH HOH A . D 4 HOH 11 274 11 HOH HOH A . D 4 HOH 12 275 12 HOH HOH A . D 4 HOH 13 276 13 HOH HOH A . D 4 HOH 14 277 14 HOH HOH A . D 4 HOH 15 278 15 HOH HOH A . D 4 HOH 16 279 16 HOH HOH A . D 4 HOH 17 280 17 HOH HOH A . D 4 HOH 18 281 18 HOH HOH A . D 4 HOH 19 282 19 HOH HOH A . D 4 HOH 20 283 20 HOH HOH A . D 4 HOH 21 284 21 HOH HOH A . D 4 HOH 22 285 22 HOH HOH A . D 4 HOH 23 286 23 HOH HOH A . D 4 HOH 24 287 24 HOH HOH A . D 4 HOH 25 288 25 HOH HOH A . D 4 HOH 26 289 26 HOH HOH A . D 4 HOH 27 290 27 HOH HOH A . D 4 HOH 28 291 28 HOH HOH A . D 4 HOH 29 292 29 HOH HOH A . D 4 HOH 30 293 30 HOH HOH A . D 4 HOH 31 294 31 HOH HOH A . D 4 HOH 32 295 32 HOH HOH A . D 4 HOH 33 296 33 HOH HOH A . D 4 HOH 34 297 34 HOH HOH A . D 4 HOH 35 298 35 HOH HOH A . D 4 HOH 36 299 36 HOH HOH A . D 4 HOH 37 300 37 HOH HOH A . D 4 HOH 38 301 38 HOH HOH A . D 4 HOH 39 302 39 HOH HOH A . D 4 HOH 40 303 40 HOH HOH A . D 4 HOH 41 304 41 HOH HOH A . D 4 HOH 42 305 42 HOH HOH A . D 4 HOH 43 306 43 HOH HOH A . D 4 HOH 44 307 44 HOH HOH A . D 4 HOH 45 308 45 HOH HOH A . D 4 HOH 46 309 46 HOH HOH A . D 4 HOH 47 310 47 HOH HOH A . D 4 HOH 48 311 48 HOH HOH A . D 4 HOH 49 312 49 HOH HOH A . D 4 HOH 50 313 50 HOH HOH A . D 4 HOH 51 314 51 HOH HOH A . D 4 HOH 52 315 52 HOH HOH A . D 4 HOH 53 316 53 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ref_seq_dif.details' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -30.0954 -0.0802 1.8860 -0.0127 0.1424 -0.1065 -0.1173 -0.1139 -0.0516 74.0218 43.7667 22.8081 -40.3637 30.3162 -24.8594 0.9358 -0.3825 -0.5532 0.7887 -1.4130 2.7089 -3.1365 1.2980 -1.1665 'X-RAY DIFFRACTION' 2 ? refined -17.1430 5.5796 5.5207 -0.0778 -0.1778 -0.3078 0.0114 -0.0023 -0.0251 19.2257 6.2256 6.6405 2.6096 3.0462 -0.1369 -0.2818 0.1670 0.1148 0.0055 0.8968 0.1285 -0.3265 -0.0247 -0.2230 'X-RAY DIFFRACTION' 3 ? refined -20.4932 1.8728 5.5022 -0.0444 -0.0527 -0.2177 -0.0136 -0.0669 -0.0843 17.5994 3.8981 4.3175 -5.7835 -5.4810 -0.4824 -0.2559 0.4276 -0.1717 0.7024 0.0517 0.1429 -0.3605 -0.0806 -0.2757 'X-RAY DIFFRACTION' 4 ? refined -23.7461 -2.1171 8.1626 -0.1214 -0.1500 0.0273 -0.0109 -0.1202 -0.0280 13.0363 5.2555 7.3461 0.1465 -1.4702 0.5832 -0.1453 0.1600 -0.0147 0.5273 -0.5906 0.4077 -0.1762 0.6914 -0.7929 'X-RAY DIFFRACTION' 5 ? refined -19.0780 -3.7566 8.2063 -0.1003 -0.1136 0.1369 0.0039 -0.0834 -0.0533 14.2637 10.1582 2.1834 5.9691 -0.8819 -4.4074 -0.3979 0.1467 0.2512 0.4544 -1.3255 -0.4028 -1.0707 0.4481 -0.1255 'X-RAY DIFFRACTION' 6 ? refined -14.4700 5.5328 19.3097 -0.1086 -0.0214 -0.1637 0.0230 -0.0496 0.0183 5.5037 5.8958 2.0285 1.0933 2.9979 0.3373 0.4168 -0.4248 0.0080 -0.9136 0.0020 0.3920 0.1467 0.1040 0.0224 'X-RAY DIFFRACTION' 7 ? refined -9.5207 8.7028 13.6954 -0.2156 -0.0730 -0.1685 0.0407 0.0036 -0.0126 8.0397 18.6318 5.2162 5.5495 1.3719 -4.3334 -0.2871 -0.0158 0.3028 -0.0968 0.4826 -0.2552 -0.5092 -0.1691 0.1971 'X-RAY DIFFRACTION' 8 ? refined -16.3126 8.0182 9.1567 -0.1486 -0.0144 -0.1831 0.0093 -0.0907 -0.0197 4.2233 2.2845 2.0190 1.0596 1.1839 2.1425 0.0811 -0.2753 0.1942 0.0246 0.2256 -0.0831 -0.5008 -0.0179 -0.1521 'X-RAY DIFFRACTION' 9 ? refined -22.9303 15.5707 13.6606 -0.1397 -0.0038 0.1370 0.1088 -0.1257 -0.1486 4.0294 14.9243 6.5976 3.2811 -2.4879 -4.9014 0.0082 -0.1012 0.0930 -0.2177 0.8185 1.6029 -0.3303 -0.4392 -0.4687 'X-RAY DIFFRACTION' 10 ? refined 2.2664 12.7930 22.3668 -0.1205 -0.1553 -0.0952 -0.0301 -0.0907 -0.0619 21.3884 6.7343 6.4424 -4.4405 -4.1449 2.6531 -0.0892 -0.1739 0.2631 -0.1138 0.1016 -0.2130 0.4736 -0.3148 0.2080 'X-RAY DIFFRACTION' 11 ? refined 0.7987 10.2846 20.9932 -0.1752 -0.1358 -0.1012 -0.0073 -0.0895 -0.0799 11.0681 5.8117 5.7302 -2.6034 0.1410 1.0900 0.1157 -0.0899 -0.0258 0.1275 0.5255 -0.1805 0.2024 -0.1763 0.3991 'X-RAY DIFFRACTION' 12 ? refined -3.1908 6.3444 21.4444 -0.1253 -0.1660 -0.1149 0.0309 -0.0865 -0.0369 10.3764 2.9316 11.9656 2.8825 3.0981 0.7044 -0.0453 0.2553 -0.2099 0.2550 -0.6537 0.1450 0.3370 0.8425 -0.3241 'X-RAY DIFFRACTION' 13 ? refined -2.4398 1.6067 25.6969 -0.0858 -0.2075 0.0386 0.0920 -0.1064 -0.0240 5.7091 6.1305 39.7458 0.5591 -2.3395 1.3181 0.1380 -0.2317 0.0937 -0.6783 -0.7909 0.4841 0.2155 -0.3555 0.4738 'X-RAY DIFFRACTION' 14 ? refined 8.9319 7.3463 34.0519 0.2338 0.1089 0.0114 -0.0302 -0.1459 -0.2064 55.2926 38.5651 8.9665 41.8427 -9.1734 -14.1094 0.6334 -1.5563 0.9229 -1.9269 -0.3323 -1.0351 0.1052 1.5835 0.8063 'X-RAY DIFFRACTION' 15 ? refined 10.1251 9.3354 28.9664 -0.0163 0.0808 -0.0485 -0.0915 -0.0700 -0.1547 4.6369 19.1086 9.7589 5.1069 -4.1860 -9.4545 0.2547 -0.3573 0.1026 -0.3483 -0.2547 -1.2243 0.7571 -0.4022 1.1704 'X-RAY DIFFRACTION' 16 ? refined 7.4612 4.5133 26.1987 -0.0824 -0.0206 -0.1020 -0.0066 -0.0887 -0.0800 3.3107 25.8721 9.2314 0.0194 -2.5428 -12.9645 0.2287 -0.4490 0.2202 -0.2891 0.0852 0.1220 0.2661 0.0200 1.0206 'X-RAY DIFFRACTION' 17 ? refined 1.5909 15.1278 33.2818 -0.0813 0.0973 -0.1356 0.0075 -0.1017 -0.2259 20.4611 12.2189 6.9950 10.4877 8.2263 6.9122 0.0165 -0.7205 0.7039 -2.2607 0.5303 -0.7238 0.2675 -0.8585 -0.4125 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 7 A 11 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 12 A 26 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 27 A 38 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 39 A 50 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 51 A 60 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 61 A 72 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 73 A 88 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 89 A 115 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 A 116 A 141 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 A 159 A 168 ? . . . . ? 'X-RAY DIFFRACTION' 11 11 A 169 A 178 ? . . . . ? 'X-RAY DIFFRACTION' 12 12 A 179 A 186 ? . . . . ? 'X-RAY DIFFRACTION' 13 13 A 187 A 197 ? . . . . ? 'X-RAY DIFFRACTION' 14 14 A 198 A 204 ? . . . . ? 'X-RAY DIFFRACTION' 15 15 A 205 A 217 ? . . . . ? 'X-RAY DIFFRACTION' 16 16 A 218 A 228 ? . . . . ? 'X-RAY DIFFRACTION' 17 17 A 229 A 242 ? . . . . ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASN _pdbx_validate_rmsd_angle.auth_seq_id_1 12 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASN _pdbx_validate_rmsd_angle.auth_seq_id_2 12 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASN _pdbx_validate_rmsd_angle.auth_seq_id_3 12 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 94.04 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation -16.96 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 55 ? ? -170.15 136.38 2 1 GLN A 59 ? ? 38.10 59.98 3 1 GLU A 74 ? ? 73.85 -5.53 4 1 ILE A 205 ? ? -140.35 -40.31 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 THR _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 11 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 12 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -122.27 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 27 ? CD ? A ARG 27 CD 2 1 Y 1 A ARG 27 ? NE ? A ARG 27 NE 3 1 Y 1 A ARG 27 ? CZ ? A ARG 27 CZ 4 1 Y 1 A ARG 27 ? NH1 ? A ARG 27 NH1 5 1 Y 1 A ARG 27 ? NH2 ? A ARG 27 NH2 6 1 Y 1 A LYS 28 ? NZ ? A LYS 28 NZ 7 1 Y 1 A LYS 29 ? CE ? A LYS 29 CE 8 1 Y 1 A LYS 29 ? NZ ? A LYS 29 NZ 9 1 Y 1 A LYS 49 ? CG ? A LYS 49 CG 10 1 Y 1 A LYS 49 ? CD ? A LYS 49 CD 11 1 Y 1 A LYS 49 ? CE ? A LYS 49 CE 12 1 Y 1 A LYS 49 ? NZ ? A LYS 49 NZ 13 1 Y 1 A ASN 51 ? CG ? A ASN 51 CG 14 1 Y 1 A ASN 51 ? OD1 ? A ASN 51 OD1 15 1 Y 1 A ASN 51 ? ND2 ? A ASN 51 ND2 16 1 Y 1 A TYR 58 ? CD1 ? A TYR 58 CD1 17 1 Y 1 A TYR 58 ? CD2 ? A TYR 58 CD2 18 1 Y 1 A TYR 58 ? CE1 ? A TYR 58 CE1 19 1 Y 1 A TYR 58 ? CE2 ? A TYR 58 CE2 20 1 Y 1 A TYR 58 ? CZ ? A TYR 58 CZ 21 1 Y 1 A TYR 58 ? OH ? A TYR 58 OH 22 1 Y 1 A ASN 61 ? OD1 ? A ASN 61 OD1 23 1 Y 1 A ASN 61 ? ND2 ? A ASN 61 ND2 24 1 Y 1 A LYS 62 ? CE ? A LYS 62 CE 25 1 Y 1 A LYS 62 ? NZ ? A LYS 62 NZ 26 1 Y 1 A LYS 92 ? CE ? A LYS 92 CE 27 1 Y 1 A LYS 92 ? NZ ? A LYS 92 NZ 28 1 Y 1 A GLU 104 ? CG ? A GLU 104 CG 29 1 Y 1 A GLU 104 ? CD ? A GLU 104 CD 30 1 Y 1 A GLU 104 ? OE1 ? A GLU 104 OE1 31 1 Y 1 A GLU 104 ? OE2 ? A GLU 104 OE2 32 1 Y 1 A ASN 108 ? ND2 ? A ASN 108 ND2 33 1 Y 1 A LEU 115 ? CD1 ? A LEU 115 CD1 34 1 Y 1 A LEU 115 ? CD2 ? A LEU 115 CD2 35 1 Y 1 A ASP 117 ? CG ? A ASP 117 CG 36 1 Y 1 A ASP 117 ? OD1 ? A ASP 117 OD1 37 1 Y 1 A ASP 117 ? OD2 ? A ASP 117 OD2 38 1 Y 1 A SER 118 ? OG ? A SER 118 OG 39 1 Y 1 A THR 121 ? OG1 ? A THR 121 OG1 40 1 Y 1 A THR 121 ? CG2 ? A THR 121 CG2 41 1 Y 1 A LYS 125 ? CD ? A LYS 125 CD 42 1 Y 1 A LYS 125 ? CE ? A LYS 125 CE 43 1 Y 1 A LYS 125 ? NZ ? A LYS 125 NZ 44 1 Y 1 A GLU 128 ? OE1 ? A GLU 128 OE1 45 1 Y 1 A GLU 128 ? OE2 ? A GLU 128 OE2 46 1 Y 1 A LYS 132 ? CG ? A LYS 132 CG 47 1 Y 1 A LYS 132 ? CD ? A LYS 132 CD 48 1 Y 1 A LYS 132 ? CE ? A LYS 132 CE 49 1 Y 1 A LYS 132 ? NZ ? A LYS 132 NZ 50 1 Y 1 A LYS 140 ? CG ? A LYS 140 CG 51 1 Y 1 A LYS 140 ? CD ? A LYS 140 CD 52 1 Y 1 A LYS 140 ? CE ? A LYS 140 CE 53 1 Y 1 A LYS 140 ? NZ ? A LYS 140 NZ 54 1 Y 1 A LYS 170 ? CE ? A LYS 170 CE 55 1 Y 1 A LYS 170 ? NZ ? A LYS 170 NZ 56 1 Y 1 A LYS 186 ? CE ? A LYS 186 CE 57 1 Y 1 A LYS 186 ? NZ ? A LYS 186 NZ 58 1 Y 1 A LYS 187 ? CG ? A LYS 187 CG 59 1 Y 1 A LYS 187 ? CD ? A LYS 187 CD 60 1 Y 1 A LYS 187 ? CE ? A LYS 187 CE 61 1 Y 1 A LYS 187 ? NZ ? A LYS 187 NZ 62 1 Y 1 A ILE 200 ? CD1 ? A ILE 200 CD1 63 1 Y 1 A THR 206 ? OG1 ? A THR 206 OG1 64 1 Y 1 A THR 206 ? CG2 ? A THR 206 CG2 65 1 Y 1 A ARG 207 ? CG ? A ARG 207 CG 66 1 Y 1 A ARG 207 ? CD ? A ARG 207 CD 67 1 Y 1 A ARG 207 ? NE ? A ARG 207 NE 68 1 Y 1 A ARG 207 ? CZ ? A ARG 207 CZ 69 1 Y 1 A ARG 207 ? NH1 ? A ARG 207 NH1 70 1 Y 1 A ARG 207 ? NH2 ? A ARG 207 NH2 71 1 Y 1 A LYS 221 ? CD ? A LYS 221 CD 72 1 Y 1 A LYS 221 ? CE ? A LYS 221 CE 73 1 Y 1 A LYS 221 ? NZ ? A LYS 221 NZ 74 1 Y 1 A ASP 228 ? OD2 ? A ASP 228 OD2 75 1 Y 1 A LYS 234 ? NZ ? A LYS 234 NZ 76 1 Y 1 A LYS 240 ? CG ? A LYS 240 CG 77 1 Y 1 A LYS 240 ? CD ? A LYS 240 CD 78 1 Y 1 A LYS 240 ? CE ? A LYS 240 CE 79 1 Y 1 A LYS 240 ? NZ ? A LYS 240 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A PRO 3 ? A PRO 3 4 1 Y 1 A HIS 4 ? A HIS 4 5 1 Y 1 A MET 5 ? A MET 5 6 1 Y 1 A ASP 6 ? A ASP 6 7 1 Y 1 A ASN 147 ? A ASN 147 8 1 Y 1 A SER 148 ? A SER 148 9 1 Y 1 A THR 149 ? A THR 149 10 1 Y 1 A LEU 150 ? A LEU 150 11 1 Y 1 A VAL 151 ? A VAL 151 12 1 Y 1 A ASP 152 ? A ASP 152 13 1 Y 1 A THR 153 ? A THR 153 14 1 Y 1 A ASP 154 ? A ASP 154 15 1 Y 1 A ALA 155 ? A ALA 155 16 1 Y 1 A GLU 156 ? A GLU 156 17 1 Y 1 A LYS 157 ? A LYS 157 18 1 Y 1 A ILE 158 ? A ILE 158 19 1 Y 1 A MET 244 ? A MET 244 20 1 Y 1 A LYS 245 ? A LYS 245 21 1 Y 1 A ASP 246 ? A ASP 246 22 1 Y 1 A LYS 247 ? A LYS 247 23 1 Y 1 A SER 248 ? A SER 248 24 1 Y 1 A MET 249 ? A MET 249 25 1 Y 1 A SER 250 ? A SER 250 26 1 Y 1 A GLU 251 ? A GLU 251 27 1 Y 1 A GLU 252 ? A GLU 252 28 1 Y 1 A LEU 253 ? A LEU 253 29 1 Y 1 A LYS 254 ? A LYS 254 30 1 Y 1 A ALA 255 ? A ALA 255 31 1 Y 1 A LYS 256 ? A LYS 256 32 1 Y 1 A SER 257 ? A SER 257 33 1 Y 1 A LYS 258 ? A LYS 258 34 1 Y 1 A SER 259 ? A SER 259 35 1 Y 1 A LYS 260 ? A LYS 260 36 1 Y 1 A GLY 261 ? A GLY 261 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BETA-MERCAPTOETHANOL BME 3 'CHLORIDE ION' CL 4 water HOH #