data_3H41 # _entry.id 3H41 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3H41 pdb_00003h41 10.2210/pdb3h41/pdb RCSB RCSB052664 ? ? WWPDB D_1000052664 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 396160 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3H41 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Structure of the gamma-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-[gamma]-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 66 _citation.page_first 1354 _citation.page_last 1364 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20944232 _citation.pdbx_database_id_DOI 10.1107/S1744309110021214 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, Q.' 1 ? primary 'Abdubek, P.' 2 ? primary 'Astakhova, T.' 3 ? primary 'Axelrod, H.L.' 4 ? primary 'Bakolitsa, C.' 5 ? primary 'Cai, X.' 6 ? primary 'Carlton, D.' 7 ? primary 'Chen, C.' 8 ? primary 'Chiu, H.J.' 9 ? primary 'Chiu, M.' 10 ? primary 'Clayton, T.' 11 ? primary 'Das, D.' 12 ? primary 'Deller, M.C.' 13 ? primary 'Duan, L.' 14 ? primary 'Ellrott, K.' 15 ? primary 'Farr, C.L.' 16 ? primary 'Feuerhelm, J.' 17 ? primary 'Grant, J.C.' 18 ? primary 'Grzechnik, A.' 19 ? primary 'Han, G.W.' 20 ? primary 'Jaroszewski, L.' 21 ? primary 'Jin, K.K.' 22 ? primary 'Klock, H.E.' 23 ? primary 'Knuth, M.W.' 24 ? primary 'Kozbial, P.' 25 ? primary 'Krishna, S.S.' 26 ? primary 'Kumar, A.' 27 ? primary 'Lam, W.W.' 28 ? primary 'Marciano, D.' 29 ? primary 'Miller, M.D.' 30 ? primary 'Morse, A.T.' 31 ? primary 'Nigoghossian, E.' 32 ? primary 'Nopakun, A.' 33 ? primary 'Okach, L.' 34 ? primary 'Puckett, C.' 35 ? primary 'Reyes, R.' 36 ? primary 'Tien, H.J.' 37 ? primary 'Trame, C.B.' 38 ? primary 'van den Bedem, H.' 39 ? primary 'Weekes, D.' 40 ? primary 'Wooten, T.' 41 ? primary 'Yeh, A.' 42 ? primary 'Hodgson, K.O.' 43 ? primary 'Wooley, J.' 44 ? primary 'Elsliger, M.A.' 45 ? primary 'Deacon, A.M.' 46 ? primary 'Godzik, A.' 47 ? primary 'Lesley, S.A.' 48 ? primary 'Wilson, I.A.' 49 ? # _cell.entry_id 3H41 _cell.length_a 95.205 _cell.length_b 59.373 _cell.length_c 61.333 _cell.angle_alpha 90.000 _cell.angle_beta 103.270 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3H41 _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NLP/P60 family protein' 35168.770 1 ? ? ? ? 2 non-polymer syn ALANINE 89.093 1 ? ? ? ? 3 non-polymer syn 'D-GLUTAMIC ACID' 147.129 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 6 ? ? ? ? 6 water nat water 18.015 265 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GEEKKDSKAFIDVSAATLWTAPDSLRPIDVPSATNPVDLWKWTKS(MSE)TLDEKLWLTNANKLETQALLGQEVTVVDKK GDWVKVLVHGQPTPRNEEGYPGW(MSE)PEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSLEVSYNTRLPLLS EDTISYRVLLPNGQKAWLRKNDGTFYRSQNDIPTPAADDLINTGK(MSE)FLGLPYIWAGTSGFGFD(OCS)SGFTHTIY KSHGITIPRDSGPQSRNGVAVDKEHLQKGDLIFFAHDQGKGSVHHVA(MSE)YIGDGN(MSE)IHSPRAERSVEIIPLNT PGYIEEYAGARRYLP ; _entity_poly.pdbx_seq_one_letter_code_can ;GEEKKDSKAFIDVSAATLWTAPDSLRPIDVPSATNPVDLWKWTKSMTLDEKLWLTNANKLETQALLGQEVTVVDKKGDWV KVLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSLEVSYNTRLPLLSEDTISYRV LLPNGQKAWLRKNDGTFYRSQNDIPTPAADDLINTGKMFLGLPYIWAGTSGFGFDCSGFTHTIYKSHGITIPRDSGPQSR NGVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSPRAERSVEIIPLNTPGYIEEYAGARRYLP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 396160 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 GLU n 1 4 LYS n 1 5 LYS n 1 6 ASP n 1 7 SER n 1 8 LYS n 1 9 ALA n 1 10 PHE n 1 11 ILE n 1 12 ASP n 1 13 VAL n 1 14 SER n 1 15 ALA n 1 16 ALA n 1 17 THR n 1 18 LEU n 1 19 TRP n 1 20 THR n 1 21 ALA n 1 22 PRO n 1 23 ASP n 1 24 SER n 1 25 LEU n 1 26 ARG n 1 27 PRO n 1 28 ILE n 1 29 ASP n 1 30 VAL n 1 31 PRO n 1 32 SER n 1 33 ALA n 1 34 THR n 1 35 ASN n 1 36 PRO n 1 37 VAL n 1 38 ASP n 1 39 LEU n 1 40 TRP n 1 41 LYS n 1 42 TRP n 1 43 THR n 1 44 LYS n 1 45 SER n 1 46 MSE n 1 47 THR n 1 48 LEU n 1 49 ASP n 1 50 GLU n 1 51 LYS n 1 52 LEU n 1 53 TRP n 1 54 LEU n 1 55 THR n 1 56 ASN n 1 57 ALA n 1 58 ASN n 1 59 LYS n 1 60 LEU n 1 61 GLU n 1 62 THR n 1 63 GLN n 1 64 ALA n 1 65 LEU n 1 66 LEU n 1 67 GLY n 1 68 GLN n 1 69 GLU n 1 70 VAL n 1 71 THR n 1 72 VAL n 1 73 VAL n 1 74 ASP n 1 75 LYS n 1 76 LYS n 1 77 GLY n 1 78 ASP n 1 79 TRP n 1 80 VAL n 1 81 LYS n 1 82 VAL n 1 83 LEU n 1 84 VAL n 1 85 HIS n 1 86 GLY n 1 87 GLN n 1 88 PRO n 1 89 THR n 1 90 PRO n 1 91 ARG n 1 92 ASN n 1 93 GLU n 1 94 GLU n 1 95 GLY n 1 96 TYR n 1 97 PRO n 1 98 GLY n 1 99 TRP n 1 100 MSE n 1 101 PRO n 1 102 GLU n 1 103 LYS n 1 104 GLN n 1 105 LEU n 1 106 THR n 1 107 TYR n 1 108 ASN n 1 109 GLN n 1 110 GLU n 1 111 PHE n 1 112 ALA n 1 113 ASP n 1 114 LYS n 1 115 THR n 1 116 ASN n 1 117 GLU n 1 118 PRO n 1 119 PHE n 1 120 VAL n 1 121 LEU n 1 122 VAL n 1 123 THR n 1 124 LYS n 1 125 PRO n 1 126 THR n 1 127 ALA n 1 128 ILE n 1 129 LEU n 1 130 TYR n 1 131 ILE n 1 132 ASN n 1 133 PRO n 1 134 SER n 1 135 GLU n 1 136 LYS n 1 137 HIS n 1 138 LYS n 1 139 SER n 1 140 LEU n 1 141 GLU n 1 142 VAL n 1 143 SER n 1 144 TYR n 1 145 ASN n 1 146 THR n 1 147 ARG n 1 148 LEU n 1 149 PRO n 1 150 LEU n 1 151 LEU n 1 152 SER n 1 153 GLU n 1 154 ASP n 1 155 THR n 1 156 ILE n 1 157 SER n 1 158 TYR n 1 159 ARG n 1 160 VAL n 1 161 LEU n 1 162 LEU n 1 163 PRO n 1 164 ASN n 1 165 GLY n 1 166 GLN n 1 167 LYS n 1 168 ALA n 1 169 TRP n 1 170 LEU n 1 171 ARG n 1 172 LYS n 1 173 ASN n 1 174 ASP n 1 175 GLY n 1 176 THR n 1 177 PHE n 1 178 TYR n 1 179 ARG n 1 180 SER n 1 181 GLN n 1 182 ASN n 1 183 ASP n 1 184 ILE n 1 185 PRO n 1 186 THR n 1 187 PRO n 1 188 ALA n 1 189 ALA n 1 190 ASP n 1 191 ASP n 1 192 LEU n 1 193 ILE n 1 194 ASN n 1 195 THR n 1 196 GLY n 1 197 LYS n 1 198 MSE n 1 199 PHE n 1 200 LEU n 1 201 GLY n 1 202 LEU n 1 203 PRO n 1 204 TYR n 1 205 ILE n 1 206 TRP n 1 207 ALA n 1 208 GLY n 1 209 THR n 1 210 SER n 1 211 GLY n 1 212 PHE n 1 213 GLY n 1 214 PHE n 1 215 ASP n 1 216 OCS n 1 217 SER n 1 218 GLY n 1 219 PHE n 1 220 THR n 1 221 HIS n 1 222 THR n 1 223 ILE n 1 224 TYR n 1 225 LYS n 1 226 SER n 1 227 HIS n 1 228 GLY n 1 229 ILE n 1 230 THR n 1 231 ILE n 1 232 PRO n 1 233 ARG n 1 234 ASP n 1 235 SER n 1 236 GLY n 1 237 PRO n 1 238 GLN n 1 239 SER n 1 240 ARG n 1 241 ASN n 1 242 GLY n 1 243 VAL n 1 244 ALA n 1 245 VAL n 1 246 ASP n 1 247 LYS n 1 248 GLU n 1 249 HIS n 1 250 LEU n 1 251 GLN n 1 252 LYS n 1 253 GLY n 1 254 ASP n 1 255 LEU n 1 256 ILE n 1 257 PHE n 1 258 PHE n 1 259 ALA n 1 260 HIS n 1 261 ASP n 1 262 GLN n 1 263 GLY n 1 264 LYS n 1 265 GLY n 1 266 SER n 1 267 VAL n 1 268 HIS n 1 269 HIS n 1 270 VAL n 1 271 ALA n 1 272 MSE n 1 273 TYR n 1 274 ILE n 1 275 GLY n 1 276 ASP n 1 277 GLY n 1 278 ASN n 1 279 MSE n 1 280 ILE n 1 281 HIS n 1 282 SER n 1 283 PRO n 1 284 ARG n 1 285 ALA n 1 286 GLU n 1 287 ARG n 1 288 SER n 1 289 VAL n 1 290 GLU n 1 291 ILE n 1 292 ILE n 1 293 PRO n 1 294 LEU n 1 295 ASN n 1 296 THR n 1 297 PRO n 1 298 GLY n 1 299 TYR n 1 300 ILE n 1 301 GLU n 1 302 GLU n 1 303 TYR n 1 304 ALA n 1 305 GLY n 1 306 ALA n 1 307 ARG n 1 308 ARG n 1 309 TYR n 1 310 LEU n 1 311 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BCE_2878, NP_979181.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus ATCC 10987' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 222523 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 10987 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q736M3_BACC1 _struct_ref.pdbx_db_accession Q736M3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EEKKDSKAFIDVSAATLWTAPDSLRPIDVPSATNPVDLWKWTKSMTLDEKLWLTNANKLETQALLGQEVTVVDKKGDWVK VLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHKSLEVSYNTRLPLLSEDTISYRVL LPNGQKAWLRKNDGTFYRSQNDIPTPAADDLINTGKMFLGLPYIWAGTSGFGFDCSGFTHTIYKSHGITIPRDSGPQSRN GVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSPRAERSVEIIPLNTPGYIEEYAGARRYLP ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3H41 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 311 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q736M3 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 333 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 333 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3H41 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q736M3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 OCS 'L-peptide linking' n 'CYSTEINESULFONIC ACID' ? 'C3 H7 N O5 S' 169.156 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3H41 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M NaCl, 50.0000% PEG-200, 0.1M Phosphate Citrate pH 4.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2009-03-27 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97860 1.0 2 0.91837 1.0 3 0.97985 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97860,0.91837,0.97985 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3H41 _reflns.d_resolution_high 1.79 _reflns.d_resolution_low 41.523 _reflns.number_obs 31085 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.percent_possible_obs 97.100 _reflns.B_iso_Wilson_estimate 16.976 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.590 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.78 1.84 9426 ? 2578 0.771 1.8 ? ? ? ? ? 86.20 ? 1 1.84 1.92 12802 ? 3378 0.574 2.5 ? ? ? ? ? 97.10 ? 2 1.92 2.00 10804 ? 2853 0.399 3.6 ? ? ? ? ? 97.80 ? 3 2.00 2.11 12341 ? 3255 0.299 4.7 ? ? ? ? ? 97.90 ? 4 2.11 2.24 11745 ? 3098 0.214 6.3 ? ? ? ? ? 98.20 ? 5 2.24 2.41 11574 ? 3069 0.171 7.7 ? ? ? ? ? 98.40 ? 6 2.41 2.66 12488 ? 3300 0.145 9.0 ? ? ? ? ? 98.60 ? 7 2.66 3.04 11682 ? 3107 0.101 12.2 ? ? ? ? ? 98.90 ? 8 3.04 3.83 11982 ? 3191 0.055 19.6 ? ? ? ? ? 98.70 ? 9 3.83 41.523 11969 ? 3253 0.042 26.5 ? ? ? ? ? 98.40 ? 10 # _refine.entry_id 3H41 _refine.ls_d_res_high 1.790 _refine.ls_d_res_low 41.523 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.980 _refine.ls_number_reflns_obs 31083 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. RAMACHANDRAN OUTLIER PRO305 IS SUPPORTED BY DENSITY. 4. CYS238 IS OXIDIZED AS CYSTEINE SULFONIC ACID (OCS). 5. THE ALA-D-GAMMA-GLU MODELED IN THE ACTIVE SITE IS BASED ON DENSITY AND FUNCTION OF THE PROTEIN. PHOSPHATE AND PEG FRAGEMENTS ARE PRESENTS IN CRYSTALLIZATION CONDITIONS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.165 _refine.ls_R_factor_R_work 0.163 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.197 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1564 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 19.859 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.380 _refine.aniso_B[2][2] -0.490 _refine.aniso_B[3][3] 0.640 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.500 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.111 _refine.overall_SU_ML 0.071 _refine.overall_SU_B 2.305 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 65.68 _refine.B_iso_min 7.59 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2409 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.number_atoms_solvent 265 _refine_hist.number_atoms_total 2754 _refine_hist.d_res_high 1.790 _refine_hist.d_res_low 41.523 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2615 0.015 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1800 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 3558 1.499 1.973 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 4421 0.914 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 327 6.563 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 113 31.371 24.336 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 420 12.889 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 12 21.671 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 383 0.089 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2856 0.008 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 500 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1567 1.823 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 624 0.571 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2557 2.866 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 1048 4.588 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 990 6.708 11.000 ? ? # _refine_ls_shell.d_res_high 1.786 _refine_ls_shell.d_res_low 1.833 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.380 _refine_ls_shell.number_reflns_R_work 2083 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.250 _refine_ls_shell.R_factor_R_free 0.279 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 119 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2202 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3H41 _struct.title 'CRYSTAL STRUCTURE OF A NLPC/P60 FAMILY PROTEIN (BCE_2878) FROM BACILLUS CEREUS ATCC 10987 AT 1.79 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;NLPC/P60 FAMILY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3H41 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 26 ? ILE A 28 ? ARG A 48 ILE A 50 5 ? 3 HELX_P HELX_P2 2 ASP A 29 ? THR A 34 ? ASP A 51 THR A 56 1 ? 6 HELX_P HELX_P3 3 ASP A 38 ? MSE A 46 ? ASP A 60 MSE A 68 1 ? 9 HELX_P HELX_P4 4 THR A 47 ? ALA A 57 ? THR A 69 ALA A 79 1 ? 11 HELX_P HELX_P5 5 ASN A 108 ? LYS A 114 ? ASN A 130 LYS A 136 1 ? 7 HELX_P HELX_P6 6 SER A 180 ? ILE A 184 ? SER A 202 ILE A 206 5 ? 5 HELX_P HELX_P7 7 ALA A 188 ? MSE A 198 ? ALA A 210 MSE A 220 1 ? 11 HELX_P HELX_P8 8 ASP A 215 ? SER A 226 ? ASP A 237 SER A 248 1 ? 12 HELX_P HELX_P9 9 ASP A 234 ? SER A 239 ? ASP A 256 SER A 261 1 ? 6 HELX_P HELX_P10 10 ASP A 246 ? LEU A 250 ? ASP A 268 LEU A 272 5 ? 5 HELX_P HELX_P11 11 HIS A 260 ? LYS A 264 ? HIS A 282 LYS A 286 1 ? 5 HELX_P HELX_P12 12 GLY A 298 ? GLU A 302 ? GLY A 320 GLU A 324 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 45 C ? ? ? 1_555 A MSE 46 N ? ? A SER 67 A MSE 68 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A MSE 46 C ? ? ? 1_555 A THR 47 N ? ? A MSE 68 A THR 69 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale3 covale both ? A TRP 99 C ? ? ? 1_555 A MSE 100 N ? ? A TRP 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 100 C ? ? ? 1_555 A PRO 101 N ? ? A MSE 122 A PRO 123 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale5 covale both ? A LYS 197 C ? ? ? 1_555 A MSE 198 N ? ? A LYS 219 A MSE 220 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale6 covale both ? A MSE 198 C ? ? ? 1_555 A PHE 199 N ? ? A MSE 220 A PHE 221 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? A ASP 215 C ? ? ? 1_555 A OCS 216 N ? ? A ASP 237 A OCS 238 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale8 covale both ? A OCS 216 C ? ? ? 1_555 A SER 217 N ? ? A OCS 238 A SER 239 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale9 covale both ? A ALA 271 C ? ? ? 1_555 A MSE 272 N ? ? A ALA 293 A MSE 294 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale10 covale both ? A MSE 272 C ? ? ? 1_555 A TYR 273 N ? ? A MSE 294 A TYR 295 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale11 covale both ? A ASN 278 C ? ? ? 1_555 A MSE 279 N ? ? A ASN 300 A MSE 301 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale12 covale both ? A MSE 279 C ? ? ? 1_555 A ILE 280 N ? ? A MSE 301 A ILE 302 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale13 covale both ? B ALA . C ? ? ? 1_555 C DGL . N ? ? A ALA 501 A DGL 502 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 35 A . ? ASN 57 A PRO 36 A ? PRO 58 A 1 0.91 2 ASN 132 A . ? ASN 154 A PRO 133 A ? PRO 155 A 1 2.57 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 7 ? D ? 2 ? E ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 96 ? PRO A 101 ? TYR A 118 PRO A 123 A 2 TRP A 79 ? VAL A 84 ? TRP A 101 VAL A 106 A 3 GLU A 69 ? LYS A 76 ? GLU A 91 LYS A 98 A 4 LYS A 8 ? ILE A 11 ? LYS A 30 ILE A 33 A 5 LEU A 105 ? THR A 106 ? LEU A 127 THR A 128 B 1 ALA A 15 ? TRP A 19 ? ALA A 37 TRP A 41 B 2 LEU A 60 ? LEU A 65 ? LEU A 82 LEU A 87 C 1 SER A 139 ? SER A 143 ? SER A 161 SER A 165 C 2 THR A 126 ? ILE A 131 ? THR A 148 ILE A 153 C 3 LYS A 167 ? ARG A 171 ? LYS A 189 ARG A 193 C 4 SER A 157 ? LEU A 161 ? SER A 179 LEU A 183 C 5 ARG A 147 ? GLU A 153 ? ARG A 169 GLU A 175 C 6 PHE A 119 ? VAL A 122 ? PHE A 141 VAL A 144 C 7 GLY A 175 ? TYR A 178 ? GLY A 197 TYR A 200 D 1 THR A 209 ? SER A 210 ? THR A 231 SER A 232 D 2 GLY A 213 ? PHE A 214 ? GLY A 235 PHE A 236 E 1 VAL A 243 ? VAL A 245 ? VAL A 265 VAL A 267 E 2 TYR A 303 ? ARG A 308 ? TYR A 325 ARG A 330 E 3 LEU A 255 ? ALA A 259 ? LEU A 277 ALA A 281 E 4 VAL A 267 ? GLY A 275 ? VAL A 289 GLY A 297 E 5 ASN A 278 ? HIS A 281 ? ASN A 300 HIS A 303 E 6 GLU A 290 ? PRO A 293 ? GLU A 312 PRO A 315 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MSE A 100 ? O MSE A 122 N VAL A 80 ? N VAL A 102 A 2 3 O TRP A 79 ? O TRP A 101 N LYS A 76 ? N LYS A 98 A 3 4 O VAL A 70 ? O VAL A 92 N ALA A 9 ? N ALA A 31 A 4 5 N PHE A 10 ? N PHE A 32 O THR A 106 ? O THR A 128 B 1 2 N LEU A 18 ? N LEU A 40 O GLU A 61 ? O GLU A 83 C 1 2 O VAL A 142 ? O VAL A 164 N ALA A 127 ? N ALA A 149 C 2 3 N TYR A 130 ? N TYR A 152 O TRP A 169 ? O TRP A 191 C 3 4 O ALA A 168 ? O ALA A 190 N VAL A 160 ? N VAL A 182 C 4 5 O ARG A 159 ? O ARG A 181 N LEU A 151 ? N LEU A 173 C 5 6 O LEU A 148 ? O LEU A 170 N VAL A 120 ? N VAL A 142 C 6 7 N LEU A 121 ? N LEU A 143 O THR A 176 ? O THR A 198 D 1 2 N SER A 210 ? N SER A 232 O GLY A 213 ? O GLY A 235 E 1 2 N VAL A 245 ? N VAL A 267 O ALA A 306 ? O ALA A 328 E 2 3 O ALA A 304 ? O ALA A 326 N PHE A 257 ? N PHE A 279 E 3 4 N ILE A 256 ? N ILE A 278 O ALA A 271 ? O ALA A 293 E 4 5 N MSE A 272 ? N MSE A 294 O ILE A 280 ? O ILE A 302 E 5 6 N MSE A 279 ? N MSE A 301 O ILE A 292 ? O ILE A 314 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ALA 501 ? 7 'BINDING SITE FOR RESIDUE ALA A 501' AC2 Software A DGL 502 ? 10 'BINDING SITE FOR RESIDUE DGL A 502' AC3 Software A PO4 1 ? 8 'BINDING SITE FOR RESIDUE PO4 A 1' AC4 Software A PG4 2 ? 4 'BINDING SITE FOR RESIDUE PG4 A 2' AC5 Software A PG4 3 ? 6 'BINDING SITE FOR RESIDUE PG4 A 3' AC6 Software A PG4 4 ? 6 'BINDING SITE FOR RESIDUE PG4 A 4' AC7 Software A PG4 5 ? 6 'BINDING SITE FOR RESIDUE PG4 A 5' AC8 Software A PG4 6 ? 7 'BINDING SITE FOR RESIDUE PG4 A 6' AC9 Software A PG4 7 ? 9 'BINDING SITE FOR RESIDUE PG4 A 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 GLU A 61 ? GLU A 83 . ? 1_555 ? 2 AC1 7 TYR A 96 ? TYR A 118 . ? 1_555 ? 3 AC1 7 TRP A 206 ? TRP A 228 . ? 1_555 ? 4 AC1 7 ASP A 215 ? ASP A 237 . ? 1_555 ? 5 AC1 7 ASP A 234 ? ASP A 256 . ? 1_555 ? 6 AC1 7 DGL C . ? DGL A 502 . ? 1_555 ? 7 AC1 7 HOH K . ? HOH A 583 . ? 1_555 ? 8 AC2 10 TRP A 206 ? TRP A 228 . ? 1_555 ? 9 AC2 10 ASP A 215 ? ASP A 237 . ? 1_555 ? 10 AC2 10 OCS A 216 ? OCS A 238 . ? 1_555 ? 11 AC2 10 SER A 217 ? SER A 239 . ? 1_555 ? 12 AC2 10 ASP A 234 ? ASP A 256 . ? 1_555 ? 13 AC2 10 SER A 235 ? SER A 257 . ? 1_555 ? 14 AC2 10 HIS A 268 ? HIS A 290 . ? 1_555 ? 15 AC2 10 ALA B . ? ALA A 501 . ? 1_555 ? 16 AC2 10 HOH K . ? HOH A 555 . ? 1_555 ? 17 AC2 10 HOH K . ? HOH A 722 . ? 1_555 ? 18 AC3 8 SER A 134 ? SER A 156 . ? 1_555 ? 19 AC3 8 GLU A 135 ? GLU A 157 . ? 2_655 ? 20 AC3 8 GLU A 135 ? GLU A 157 . ? 1_555 ? 21 AC3 8 LYS A 136 ? LYS A 158 . ? 1_555 ? 22 AC3 8 LYS A 138 ? LYS A 160 . ? 1_555 ? 23 AC3 8 GLN A 166 ? GLN A 188 . ? 1_555 ? 24 AC3 8 HOH K . ? HOH A 609 . ? 1_555 ? 25 AC3 8 HOH K . ? HOH A 620 . ? 1_555 ? 26 AC4 4 ILE A 193 ? ILE A 215 . ? 1_555 ? 27 AC4 4 ASN A 194 ? ASN A 216 . ? 1_555 ? 28 AC4 4 LYS A 197 ? LYS A 219 . ? 1_555 ? 29 AC4 4 ILE A 274 ? ILE A 296 . ? 1_555 ? 30 AC5 6 LEU A 25 ? LEU A 47 . ? 1_555 ? 31 AC5 6 THR A 34 ? THR A 56 . ? 1_555 ? 32 AC5 6 ASP A 78 ? ASP A 100 . ? 1_555 ? 33 AC5 6 LYS A 103 ? LYS A 125 . ? 1_555 ? 34 AC5 6 HOH K . ? HOH A 541 . ? 1_555 ? 35 AC5 6 HOH K . ? HOH A 702 . ? 1_555 ? 36 AC6 6 ASP A 12 ? ASP A 34 . ? 1_555 ? 37 AC6 6 ILE A 131 ? ILE A 153 . ? 1_555 ? 38 AC6 6 PRO A 163 ? PRO A 185 . ? 1_555 ? 39 AC6 6 ASN A 164 ? ASN A 186 . ? 1_555 ? 40 AC6 6 HOH K . ? HOH A 511 . ? 1_555 ? 41 AC6 6 HOH K . ? HOH A 603 . ? 1_555 ? 42 AC7 6 THR A 186 ? THR A 208 . ? 4_546 ? 43 AC7 6 ALA A 188 ? ALA A 210 . ? 4_546 ? 44 AC7 6 GLY A 236 ? GLY A 258 . ? 1_555 ? 45 AC7 6 ARG A 240 ? ARG A 262 . ? 1_555 ? 46 AC7 6 SER A 266 ? SER A 288 . ? 1_555 ? 47 AC7 6 HOH K . ? HOH A 622 . ? 4_546 ? 48 AC8 7 ASN A 132 ? ASN A 154 . ? 1_555 ? 49 AC8 7 SER A 152 ? SER A 174 . ? 1_555 ? 50 AC8 7 ASP A 154 ? ASP A 176 . ? 1_555 ? 51 AC8 7 ILE A 156 ? ILE A 178 . ? 1_555 ? 52 AC8 7 SER A 157 ? SER A 179 . ? 1_555 ? 53 AC8 7 TRP A 169 ? TRP A 191 . ? 1_555 ? 54 AC8 7 HOH K . ? HOH A 569 . ? 1_555 ? 55 AC9 9 MSE A 46 ? MSE A 68 . ? 1_555 ? 56 AC9 9 THR A 47 ? THR A 69 . ? 1_555 ? 57 AC9 9 LEU A 48 ? LEU A 70 . ? 1_555 ? 58 AC9 9 LYS A 51 ? LYS A 73 . ? 1_555 ? 59 AC9 9 ALA A 285 ? ALA A 307 . ? 1_555 ? 60 AC9 9 GLU A 286 ? GLU A 308 . ? 1_555 ? 61 AC9 9 ARG A 287 ? ARG A 309 . ? 1_555 ? 62 AC9 9 SER A 288 ? SER A 310 . ? 1_555 ? 63 AC9 9 HOH K . ? HOH A 559 . ? 1_555 ? # _atom_sites.entry_id 3H41 _atom_sites.fract_transf_matrix[1][1] 0.010504 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002478 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016843 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016752 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLU 2 24 ? ? ? A . n A 1 3 GLU 3 25 ? ? ? A . n A 1 4 LYS 4 26 ? ? ? A . n A 1 5 LYS 5 27 ? ? ? A . n A 1 6 ASP 6 28 ? ? ? A . n A 1 7 SER 7 29 29 SER SER A . n A 1 8 LYS 8 30 30 LYS LYS A . n A 1 9 ALA 9 31 31 ALA ALA A . n A 1 10 PHE 10 32 32 PHE PHE A . n A 1 11 ILE 11 33 33 ILE ILE A . n A 1 12 ASP 12 34 34 ASP ASP A . n A 1 13 VAL 13 35 35 VAL VAL A . n A 1 14 SER 14 36 36 SER SER A . n A 1 15 ALA 15 37 37 ALA ALA A . n A 1 16 ALA 16 38 38 ALA ALA A . n A 1 17 THR 17 39 39 THR THR A . n A 1 18 LEU 18 40 40 LEU LEU A . n A 1 19 TRP 19 41 41 TRP TRP A . n A 1 20 THR 20 42 42 THR THR A . n A 1 21 ALA 21 43 43 ALA ALA A . n A 1 22 PRO 22 44 44 PRO PRO A . n A 1 23 ASP 23 45 45 ASP ASP A . n A 1 24 SER 24 46 46 SER SER A . n A 1 25 LEU 25 47 47 LEU LEU A . n A 1 26 ARG 26 48 48 ARG ARG A . n A 1 27 PRO 27 49 49 PRO PRO A . n A 1 28 ILE 28 50 50 ILE ILE A . n A 1 29 ASP 29 51 51 ASP ASP A . n A 1 30 VAL 30 52 52 VAL VAL A . n A 1 31 PRO 31 53 53 PRO PRO A . n A 1 32 SER 32 54 54 SER SER A . n A 1 33 ALA 33 55 55 ALA ALA A . n A 1 34 THR 34 56 56 THR THR A . n A 1 35 ASN 35 57 57 ASN ASN A . n A 1 36 PRO 36 58 58 PRO PRO A . n A 1 37 VAL 37 59 59 VAL VAL A . n A 1 38 ASP 38 60 60 ASP ASP A . n A 1 39 LEU 39 61 61 LEU LEU A . n A 1 40 TRP 40 62 62 TRP TRP A . n A 1 41 LYS 41 63 63 LYS LYS A . n A 1 42 TRP 42 64 64 TRP TRP A . n A 1 43 THR 43 65 65 THR THR A . n A 1 44 LYS 44 66 66 LYS LYS A . n A 1 45 SER 45 67 67 SER SER A . n A 1 46 MSE 46 68 68 MSE MSE A . n A 1 47 THR 47 69 69 THR THR A . n A 1 48 LEU 48 70 70 LEU LEU A . n A 1 49 ASP 49 71 71 ASP ASP A . n A 1 50 GLU 50 72 72 GLU GLU A . n A 1 51 LYS 51 73 73 LYS LYS A . n A 1 52 LEU 52 74 74 LEU LEU A . n A 1 53 TRP 53 75 75 TRP TRP A . n A 1 54 LEU 54 76 76 LEU LEU A . n A 1 55 THR 55 77 77 THR THR A . n A 1 56 ASN 56 78 78 ASN ASN A . n A 1 57 ALA 57 79 79 ALA ALA A . n A 1 58 ASN 58 80 80 ASN ASN A . n A 1 59 LYS 59 81 81 LYS LYS A . n A 1 60 LEU 60 82 82 LEU LEU A . n A 1 61 GLU 61 83 83 GLU GLU A . n A 1 62 THR 62 84 84 THR THR A . n A 1 63 GLN 63 85 85 GLN GLN A . n A 1 64 ALA 64 86 86 ALA ALA A . n A 1 65 LEU 65 87 87 LEU LEU A . n A 1 66 LEU 66 88 88 LEU LEU A . n A 1 67 GLY 67 89 89 GLY GLY A . n A 1 68 GLN 68 90 90 GLN GLN A . n A 1 69 GLU 69 91 91 GLU GLU A . n A 1 70 VAL 70 92 92 VAL VAL A . n A 1 71 THR 71 93 93 THR THR A . n A 1 72 VAL 72 94 94 VAL VAL A . n A 1 73 VAL 73 95 95 VAL VAL A . n A 1 74 ASP 74 96 96 ASP ASP A . n A 1 75 LYS 75 97 97 LYS LYS A . n A 1 76 LYS 76 98 98 LYS LYS A . n A 1 77 GLY 77 99 99 GLY GLY A . n A 1 78 ASP 78 100 100 ASP ASP A . n A 1 79 TRP 79 101 101 TRP TRP A . n A 1 80 VAL 80 102 102 VAL VAL A . n A 1 81 LYS 81 103 103 LYS LYS A . n A 1 82 VAL 82 104 104 VAL VAL A . n A 1 83 LEU 83 105 105 LEU LEU A . n A 1 84 VAL 84 106 106 VAL VAL A . n A 1 85 HIS 85 107 107 HIS HIS A . n A 1 86 GLY 86 108 108 GLY GLY A . n A 1 87 GLN 87 109 109 GLN GLN A . n A 1 88 PRO 88 110 110 PRO PRO A . n A 1 89 THR 89 111 111 THR THR A . n A 1 90 PRO 90 112 112 PRO PRO A . n A 1 91 ARG 91 113 113 ARG ARG A . n A 1 92 ASN 92 114 114 ASN ASN A . n A 1 93 GLU 93 115 115 GLU GLU A . n A 1 94 GLU 94 116 116 GLU GLU A . n A 1 95 GLY 95 117 117 GLY GLY A . n A 1 96 TYR 96 118 118 TYR TYR A . n A 1 97 PRO 97 119 119 PRO PRO A . n A 1 98 GLY 98 120 120 GLY GLY A . n A 1 99 TRP 99 121 121 TRP TRP A . n A 1 100 MSE 100 122 122 MSE MSE A . n A 1 101 PRO 101 123 123 PRO PRO A . n A 1 102 GLU 102 124 124 GLU GLU A . n A 1 103 LYS 103 125 125 LYS LYS A . n A 1 104 GLN 104 126 126 GLN GLN A . n A 1 105 LEU 105 127 127 LEU LEU A . n A 1 106 THR 106 128 128 THR THR A . n A 1 107 TYR 107 129 129 TYR TYR A . n A 1 108 ASN 108 130 130 ASN ASN A . n A 1 109 GLN 109 131 131 GLN GLN A . n A 1 110 GLU 110 132 132 GLU GLU A . n A 1 111 PHE 111 133 133 PHE PHE A . n A 1 112 ALA 112 134 134 ALA ALA A . n A 1 113 ASP 113 135 135 ASP ASP A . n A 1 114 LYS 114 136 136 LYS LYS A . n A 1 115 THR 115 137 137 THR THR A . n A 1 116 ASN 116 138 138 ASN ASN A . n A 1 117 GLU 117 139 139 GLU GLU A . n A 1 118 PRO 118 140 140 PRO PRO A . n A 1 119 PHE 119 141 141 PHE PHE A . n A 1 120 VAL 120 142 142 VAL VAL A . n A 1 121 LEU 121 143 143 LEU LEU A . n A 1 122 VAL 122 144 144 VAL VAL A . n A 1 123 THR 123 145 145 THR THR A . n A 1 124 LYS 124 146 146 LYS LYS A . n A 1 125 PRO 125 147 147 PRO PRO A . n A 1 126 THR 126 148 148 THR THR A . n A 1 127 ALA 127 149 149 ALA ALA A . n A 1 128 ILE 128 150 150 ILE ILE A . n A 1 129 LEU 129 151 151 LEU LEU A . n A 1 130 TYR 130 152 152 TYR TYR A . n A 1 131 ILE 131 153 153 ILE ILE A . n A 1 132 ASN 132 154 154 ASN ASN A . n A 1 133 PRO 133 155 155 PRO PRO A . n A 1 134 SER 134 156 156 SER SER A . n A 1 135 GLU 135 157 157 GLU GLU A . n A 1 136 LYS 136 158 158 LYS LYS A . n A 1 137 HIS 137 159 159 HIS HIS A . n A 1 138 LYS 138 160 160 LYS LYS A . n A 1 139 SER 139 161 161 SER SER A . n A 1 140 LEU 140 162 162 LEU LEU A . n A 1 141 GLU 141 163 163 GLU GLU A . n A 1 142 VAL 142 164 164 VAL VAL A . n A 1 143 SER 143 165 165 SER SER A . n A 1 144 TYR 144 166 166 TYR TYR A . n A 1 145 ASN 145 167 167 ASN ASN A . n A 1 146 THR 146 168 168 THR THR A . n A 1 147 ARG 147 169 169 ARG ARG A . n A 1 148 LEU 148 170 170 LEU LEU A . n A 1 149 PRO 149 171 171 PRO PRO A . n A 1 150 LEU 150 172 172 LEU LEU A . n A 1 151 LEU 151 173 173 LEU LEU A . n A 1 152 SER 152 174 174 SER SER A . n A 1 153 GLU 153 175 175 GLU GLU A . n A 1 154 ASP 154 176 176 ASP ASP A . n A 1 155 THR 155 177 177 THR THR A . n A 1 156 ILE 156 178 178 ILE ILE A . n A 1 157 SER 157 179 179 SER SER A . n A 1 158 TYR 158 180 180 TYR TYR A . n A 1 159 ARG 159 181 181 ARG ARG A . n A 1 160 VAL 160 182 182 VAL VAL A . n A 1 161 LEU 161 183 183 LEU LEU A . n A 1 162 LEU 162 184 184 LEU LEU A . n A 1 163 PRO 163 185 185 PRO PRO A . n A 1 164 ASN 164 186 186 ASN ASN A . n A 1 165 GLY 165 187 187 GLY GLY A . n A 1 166 GLN 166 188 188 GLN GLN A . n A 1 167 LYS 167 189 189 LYS LYS A . n A 1 168 ALA 168 190 190 ALA ALA A . n A 1 169 TRP 169 191 191 TRP TRP A . n A 1 170 LEU 170 192 192 LEU LEU A . n A 1 171 ARG 171 193 193 ARG ARG A . n A 1 172 LYS 172 194 194 LYS LYS A . n A 1 173 ASN 173 195 195 ASN ASN A . n A 1 174 ASP 174 196 196 ASP ASP A . n A 1 175 GLY 175 197 197 GLY GLY A . n A 1 176 THR 176 198 198 THR THR A . n A 1 177 PHE 177 199 199 PHE PHE A . n A 1 178 TYR 178 200 200 TYR TYR A . n A 1 179 ARG 179 201 201 ARG ARG A . n A 1 180 SER 180 202 202 SER SER A . n A 1 181 GLN 181 203 203 GLN GLN A . n A 1 182 ASN 182 204 204 ASN ASN A . n A 1 183 ASP 183 205 205 ASP ASP A . n A 1 184 ILE 184 206 206 ILE ILE A . n A 1 185 PRO 185 207 207 PRO PRO A . n A 1 186 THR 186 208 208 THR THR A . n A 1 187 PRO 187 209 209 PRO PRO A . n A 1 188 ALA 188 210 210 ALA ALA A . n A 1 189 ALA 189 211 211 ALA ALA A . n A 1 190 ASP 190 212 212 ASP ASP A . n A 1 191 ASP 191 213 213 ASP ASP A . n A 1 192 LEU 192 214 214 LEU LEU A . n A 1 193 ILE 193 215 215 ILE ILE A . n A 1 194 ASN 194 216 216 ASN ASN A . n A 1 195 THR 195 217 217 THR THR A . n A 1 196 GLY 196 218 218 GLY GLY A . n A 1 197 LYS 197 219 219 LYS LYS A . n A 1 198 MSE 198 220 220 MSE MSE A . n A 1 199 PHE 199 221 221 PHE PHE A . n A 1 200 LEU 200 222 222 LEU LEU A . n A 1 201 GLY 201 223 223 GLY GLY A . n A 1 202 LEU 202 224 224 LEU LEU A . n A 1 203 PRO 203 225 225 PRO PRO A . n A 1 204 TYR 204 226 226 TYR TYR A . n A 1 205 ILE 205 227 227 ILE ILE A . n A 1 206 TRP 206 228 228 TRP TRP A . n A 1 207 ALA 207 229 229 ALA ALA A . n A 1 208 GLY 208 230 230 GLY GLY A . n A 1 209 THR 209 231 231 THR THR A . n A 1 210 SER 210 232 232 SER SER A . n A 1 211 GLY 211 233 233 GLY GLY A . n A 1 212 PHE 212 234 234 PHE PHE A . n A 1 213 GLY 213 235 235 GLY GLY A . n A 1 214 PHE 214 236 236 PHE PHE A . n A 1 215 ASP 215 237 237 ASP ASP A . n A 1 216 OCS 216 238 238 OCS OCS A . n A 1 217 SER 217 239 239 SER SER A . n A 1 218 GLY 218 240 240 GLY GLY A . n A 1 219 PHE 219 241 241 PHE PHE A . n A 1 220 THR 220 242 242 THR THR A . n A 1 221 HIS 221 243 243 HIS HIS A . n A 1 222 THR 222 244 244 THR THR A . n A 1 223 ILE 223 245 245 ILE ILE A . n A 1 224 TYR 224 246 246 TYR TYR A . n A 1 225 LYS 225 247 247 LYS LYS A . n A 1 226 SER 226 248 248 SER SER A . n A 1 227 HIS 227 249 249 HIS HIS A . n A 1 228 GLY 228 250 250 GLY GLY A . n A 1 229 ILE 229 251 251 ILE ILE A . n A 1 230 THR 230 252 252 THR THR A . n A 1 231 ILE 231 253 253 ILE ILE A . n A 1 232 PRO 232 254 254 PRO PRO A . n A 1 233 ARG 233 255 255 ARG ARG A . n A 1 234 ASP 234 256 256 ASP ASP A . n A 1 235 SER 235 257 257 SER SER A . n A 1 236 GLY 236 258 258 GLY GLY A . n A 1 237 PRO 237 259 259 PRO PRO A . n A 1 238 GLN 238 260 260 GLN GLN A . n A 1 239 SER 239 261 261 SER SER A . n A 1 240 ARG 240 262 262 ARG ARG A . n A 1 241 ASN 241 263 263 ASN ASN A . n A 1 242 GLY 242 264 264 GLY GLY A . n A 1 243 VAL 243 265 265 VAL VAL A . n A 1 244 ALA 244 266 266 ALA ALA A . n A 1 245 VAL 245 267 267 VAL VAL A . n A 1 246 ASP 246 268 268 ASP ASP A . n A 1 247 LYS 247 269 269 LYS LYS A . n A 1 248 GLU 248 270 270 GLU GLU A . n A 1 249 HIS 249 271 271 HIS HIS A . n A 1 250 LEU 250 272 272 LEU LEU A . n A 1 251 GLN 251 273 273 GLN GLN A . n A 1 252 LYS 252 274 274 LYS LYS A . n A 1 253 GLY 253 275 275 GLY GLY A . n A 1 254 ASP 254 276 276 ASP ASP A . n A 1 255 LEU 255 277 277 LEU LEU A . n A 1 256 ILE 256 278 278 ILE ILE A . n A 1 257 PHE 257 279 279 PHE PHE A . n A 1 258 PHE 258 280 280 PHE PHE A . n A 1 259 ALA 259 281 281 ALA ALA A . n A 1 260 HIS 260 282 282 HIS HIS A . n A 1 261 ASP 261 283 283 ASP ASP A . n A 1 262 GLN 262 284 284 GLN GLN A . n A 1 263 GLY 263 285 285 GLY GLY A . n A 1 264 LYS 264 286 286 LYS LYS A . n A 1 265 GLY 265 287 287 GLY GLY A . n A 1 266 SER 266 288 288 SER SER A . n A 1 267 VAL 267 289 289 VAL VAL A . n A 1 268 HIS 268 290 290 HIS HIS A . n A 1 269 HIS 269 291 291 HIS HIS A . n A 1 270 VAL 270 292 292 VAL VAL A . n A 1 271 ALA 271 293 293 ALA ALA A . n A 1 272 MSE 272 294 294 MSE MSE A . n A 1 273 TYR 273 295 295 TYR TYR A . n A 1 274 ILE 274 296 296 ILE ILE A . n A 1 275 GLY 275 297 297 GLY GLY A . n A 1 276 ASP 276 298 298 ASP ASP A . n A 1 277 GLY 277 299 299 GLY GLY A . n A 1 278 ASN 278 300 300 ASN ASN A . n A 1 279 MSE 279 301 301 MSE MSE A . n A 1 280 ILE 280 302 302 ILE ILE A . n A 1 281 HIS 281 303 303 HIS HIS A . n A 1 282 SER 282 304 304 SER SER A . n A 1 283 PRO 283 305 305 PRO PRO A . n A 1 284 ARG 284 306 306 ARG ARG A . n A 1 285 ALA 285 307 307 ALA ALA A . n A 1 286 GLU 286 308 308 GLU GLU A . n A 1 287 ARG 287 309 309 ARG ARG A . n A 1 288 SER 288 310 310 SER SER A . n A 1 289 VAL 289 311 311 VAL VAL A . n A 1 290 GLU 290 312 312 GLU GLU A . n A 1 291 ILE 291 313 313 ILE ILE A . n A 1 292 ILE 292 314 314 ILE ILE A . n A 1 293 PRO 293 315 315 PRO PRO A . n A 1 294 LEU 294 316 316 LEU LEU A . n A 1 295 ASN 295 317 317 ASN ASN A . n A 1 296 THR 296 318 318 THR THR A . n A 1 297 PRO 297 319 319 PRO PRO A . n A 1 298 GLY 298 320 320 GLY GLY A . n A 1 299 TYR 299 321 321 TYR TYR A . n A 1 300 ILE 300 322 322 ILE ILE A . n A 1 301 GLU 301 323 323 GLU GLU A . n A 1 302 GLU 302 324 324 GLU GLU A . n A 1 303 TYR 303 325 325 TYR TYR A . n A 1 304 ALA 304 326 326 ALA ALA A . n A 1 305 GLY 305 327 327 GLY GLY A . n A 1 306 ALA 306 328 328 ALA ALA A . n A 1 307 ARG 307 329 329 ARG ARG A . n A 1 308 ARG 308 330 330 ARG ARG A . n A 1 309 TYR 309 331 331 TYR TYR A . n A 1 310 LEU 310 332 332 LEU LEU A . n A 1 311 PRO 311 333 333 PRO PRO A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA 1 501 501 ALA ALA A . C 3 DGL 1 502 502 DGL DGL A . D 4 PO4 1 1 1 PO4 PO4 A . E 5 PG4 1 2 2 PG4 PG4 A . F 5 PG4 1 3 3 PG4 PG4 A . G 5 PG4 1 4 4 PG4 PG4 A . H 5 PG4 1 5 5 PG4 PG4 A . I 5 PG4 1 6 6 PG4 PG4 A . J 5 PG4 1 7 7 PG4 PG4 A . K 6 HOH 1 8 8 HOH HOH A . K 6 HOH 2 9 9 HOH HOH A . K 6 HOH 3 10 10 HOH HOH A . K 6 HOH 4 11 11 HOH HOH A . K 6 HOH 5 12 12 HOH HOH A . K 6 HOH 6 13 13 HOH HOH A . K 6 HOH 7 14 14 HOH HOH A . K 6 HOH 8 15 15 HOH HOH A . K 6 HOH 9 16 16 HOH HOH A . K 6 HOH 10 17 17 HOH HOH A . K 6 HOH 11 18 18 HOH HOH A . K 6 HOH 12 19 19 HOH HOH A . K 6 HOH 13 20 20 HOH HOH A . K 6 HOH 14 21 21 HOH HOH A . K 6 HOH 15 22 22 HOH HOH A . K 6 HOH 16 503 23 HOH HOH A . K 6 HOH 17 504 24 HOH HOH A . K 6 HOH 18 505 25 HOH HOH A . K 6 HOH 19 506 26 HOH HOH A . K 6 HOH 20 507 27 HOH HOH A . K 6 HOH 21 508 28 HOH HOH A . K 6 HOH 22 509 29 HOH HOH A . K 6 HOH 23 510 30 HOH HOH A . K 6 HOH 24 511 31 HOH HOH A . K 6 HOH 25 512 32 HOH HOH A . K 6 HOH 26 513 33 HOH HOH A . K 6 HOH 27 514 34 HOH HOH A . K 6 HOH 28 515 35 HOH HOH A . K 6 HOH 29 516 36 HOH HOH A . K 6 HOH 30 517 37 HOH HOH A . K 6 HOH 31 518 38 HOH HOH A . K 6 HOH 32 519 39 HOH HOH A . K 6 HOH 33 520 40 HOH HOH A . K 6 HOH 34 521 41 HOH HOH A . K 6 HOH 35 522 42 HOH HOH A . K 6 HOH 36 523 43 HOH HOH A . K 6 HOH 37 524 44 HOH HOH A . K 6 HOH 38 525 45 HOH HOH A . K 6 HOH 39 526 46 HOH HOH A . K 6 HOH 40 527 47 HOH HOH A . K 6 HOH 41 528 48 HOH HOH A . K 6 HOH 42 529 49 HOH HOH A . K 6 HOH 43 530 50 HOH HOH A . K 6 HOH 44 531 51 HOH HOH A . K 6 HOH 45 532 52 HOH HOH A . K 6 HOH 46 533 53 HOH HOH A . K 6 HOH 47 534 54 HOH HOH A . K 6 HOH 48 535 55 HOH HOH A . K 6 HOH 49 536 56 HOH HOH A . K 6 HOH 50 537 57 HOH HOH A . K 6 HOH 51 538 58 HOH HOH A . K 6 HOH 52 539 59 HOH HOH A . K 6 HOH 53 540 60 HOH HOH A . K 6 HOH 54 541 61 HOH HOH A . K 6 HOH 55 542 62 HOH HOH A . K 6 HOH 56 543 63 HOH HOH A . K 6 HOH 57 544 64 HOH HOH A . K 6 HOH 58 545 65 HOH HOH A . K 6 HOH 59 546 66 HOH HOH A . K 6 HOH 60 547 67 HOH HOH A . K 6 HOH 61 548 68 HOH HOH A . K 6 HOH 62 549 69 HOH HOH A . K 6 HOH 63 550 70 HOH HOH A . K 6 HOH 64 551 71 HOH HOH A . K 6 HOH 65 552 72 HOH HOH A . K 6 HOH 66 553 73 HOH HOH A . K 6 HOH 67 554 74 HOH HOH A . K 6 HOH 68 555 75 HOH HOH A . K 6 HOH 69 556 76 HOH HOH A . K 6 HOH 70 557 77 HOH HOH A . K 6 HOH 71 558 78 HOH HOH A . K 6 HOH 72 559 79 HOH HOH A . K 6 HOH 73 560 80 HOH HOH A . K 6 HOH 74 561 81 HOH HOH A . K 6 HOH 75 562 82 HOH HOH A . K 6 HOH 76 563 83 HOH HOH A . K 6 HOH 77 564 84 HOH HOH A . K 6 HOH 78 565 85 HOH HOH A . K 6 HOH 79 566 86 HOH HOH A . K 6 HOH 80 567 87 HOH HOH A . K 6 HOH 81 568 88 HOH HOH A . K 6 HOH 82 569 89 HOH HOH A . K 6 HOH 83 570 90 HOH HOH A . K 6 HOH 84 571 91 HOH HOH A . K 6 HOH 85 572 92 HOH HOH A . K 6 HOH 86 573 93 HOH HOH A . K 6 HOH 87 574 94 HOH HOH A . K 6 HOH 88 575 95 HOH HOH A . K 6 HOH 89 576 96 HOH HOH A . K 6 HOH 90 577 97 HOH HOH A . K 6 HOH 91 578 98 HOH HOH A . K 6 HOH 92 579 99 HOH HOH A . K 6 HOH 93 580 100 HOH HOH A . K 6 HOH 94 581 101 HOH HOH A . K 6 HOH 95 582 102 HOH HOH A . K 6 HOH 96 583 103 HOH HOH A . K 6 HOH 97 584 104 HOH HOH A . K 6 HOH 98 585 105 HOH HOH A . K 6 HOH 99 586 106 HOH HOH A . K 6 HOH 100 587 107 HOH HOH A . K 6 HOH 101 588 108 HOH HOH A . K 6 HOH 102 589 109 HOH HOH A . K 6 HOH 103 590 110 HOH HOH A . K 6 HOH 104 591 111 HOH HOH A . K 6 HOH 105 592 112 HOH HOH A . K 6 HOH 106 593 113 HOH HOH A . K 6 HOH 107 594 114 HOH HOH A . K 6 HOH 108 595 115 HOH HOH A . K 6 HOH 109 596 116 HOH HOH A . K 6 HOH 110 597 117 HOH HOH A . K 6 HOH 111 598 118 HOH HOH A . K 6 HOH 112 599 119 HOH HOH A . K 6 HOH 113 600 120 HOH HOH A . K 6 HOH 114 601 121 HOH HOH A . K 6 HOH 115 602 122 HOH HOH A . K 6 HOH 116 603 123 HOH HOH A . K 6 HOH 117 604 124 HOH HOH A . K 6 HOH 118 605 125 HOH HOH A . K 6 HOH 119 606 126 HOH HOH A . K 6 HOH 120 607 127 HOH HOH A . K 6 HOH 121 608 128 HOH HOH A . K 6 HOH 122 609 129 HOH HOH A . K 6 HOH 123 610 130 HOH HOH A . K 6 HOH 124 611 131 HOH HOH A . K 6 HOH 125 612 132 HOH HOH A . K 6 HOH 126 613 133 HOH HOH A . K 6 HOH 127 614 134 HOH HOH A . K 6 HOH 128 615 135 HOH HOH A . K 6 HOH 129 616 136 HOH HOH A . K 6 HOH 130 617 137 HOH HOH A . K 6 HOH 131 618 138 HOH HOH A . K 6 HOH 132 619 139 HOH HOH A . K 6 HOH 133 620 140 HOH HOH A . K 6 HOH 134 621 141 HOH HOH A . K 6 HOH 135 622 142 HOH HOH A . K 6 HOH 136 623 143 HOH HOH A . K 6 HOH 137 624 144 HOH HOH A . K 6 HOH 138 625 145 HOH HOH A . K 6 HOH 139 626 146 HOH HOH A . K 6 HOH 140 627 147 HOH HOH A . K 6 HOH 141 628 148 HOH HOH A . K 6 HOH 142 629 149 HOH HOH A . K 6 HOH 143 630 150 HOH HOH A . K 6 HOH 144 631 151 HOH HOH A . K 6 HOH 145 632 152 HOH HOH A . K 6 HOH 146 633 153 HOH HOH A . K 6 HOH 147 634 154 HOH HOH A . K 6 HOH 148 635 155 HOH HOH A . K 6 HOH 149 636 156 HOH HOH A . K 6 HOH 150 637 157 HOH HOH A . K 6 HOH 151 638 158 HOH HOH A . K 6 HOH 152 639 159 HOH HOH A . K 6 HOH 153 640 160 HOH HOH A . K 6 HOH 154 641 161 HOH HOH A . K 6 HOH 155 642 162 HOH HOH A . K 6 HOH 156 643 163 HOH HOH A . K 6 HOH 157 644 164 HOH HOH A . K 6 HOH 158 645 165 HOH HOH A . K 6 HOH 159 646 166 HOH HOH A . K 6 HOH 160 647 167 HOH HOH A . K 6 HOH 161 648 168 HOH HOH A . K 6 HOH 162 649 169 HOH HOH A . K 6 HOH 163 650 170 HOH HOH A . K 6 HOH 164 651 171 HOH HOH A . K 6 HOH 165 652 172 HOH HOH A . K 6 HOH 166 653 173 HOH HOH A . K 6 HOH 167 654 174 HOH HOH A . K 6 HOH 168 655 175 HOH HOH A . K 6 HOH 169 656 176 HOH HOH A . K 6 HOH 170 657 177 HOH HOH A . K 6 HOH 171 658 178 HOH HOH A . K 6 HOH 172 659 179 HOH HOH A . K 6 HOH 173 660 180 HOH HOH A . K 6 HOH 174 661 181 HOH HOH A . K 6 HOH 175 662 182 HOH HOH A . K 6 HOH 176 663 183 HOH HOH A . K 6 HOH 177 664 184 HOH HOH A . K 6 HOH 178 665 185 HOH HOH A . K 6 HOH 179 666 186 HOH HOH A . K 6 HOH 180 667 187 HOH HOH A . K 6 HOH 181 668 188 HOH HOH A . K 6 HOH 182 669 189 HOH HOH A . K 6 HOH 183 670 190 HOH HOH A . K 6 HOH 184 671 191 HOH HOH A . K 6 HOH 185 672 192 HOH HOH A . K 6 HOH 186 673 193 HOH HOH A . K 6 HOH 187 674 194 HOH HOH A . K 6 HOH 188 675 195 HOH HOH A . K 6 HOH 189 676 196 HOH HOH A . K 6 HOH 190 677 197 HOH HOH A . K 6 HOH 191 678 198 HOH HOH A . K 6 HOH 192 679 199 HOH HOH A . K 6 HOH 193 680 200 HOH HOH A . K 6 HOH 194 681 201 HOH HOH A . K 6 HOH 195 682 202 HOH HOH A . K 6 HOH 196 683 203 HOH HOH A . K 6 HOH 197 684 204 HOH HOH A . K 6 HOH 198 685 205 HOH HOH A . K 6 HOH 199 686 206 HOH HOH A . K 6 HOH 200 687 207 HOH HOH A . K 6 HOH 201 688 208 HOH HOH A . K 6 HOH 202 689 209 HOH HOH A . K 6 HOH 203 690 210 HOH HOH A . K 6 HOH 204 691 211 HOH HOH A . K 6 HOH 205 692 212 HOH HOH A . K 6 HOH 206 693 213 HOH HOH A . K 6 HOH 207 694 214 HOH HOH A . K 6 HOH 208 695 215 HOH HOH A . K 6 HOH 209 696 216 HOH HOH A . K 6 HOH 210 697 217 HOH HOH A . K 6 HOH 211 698 218 HOH HOH A . K 6 HOH 212 699 219 HOH HOH A . K 6 HOH 213 700 220 HOH HOH A . K 6 HOH 214 701 221 HOH HOH A . K 6 HOH 215 702 222 HOH HOH A . K 6 HOH 216 703 223 HOH HOH A . K 6 HOH 217 704 224 HOH HOH A . K 6 HOH 218 705 225 HOH HOH A . K 6 HOH 219 706 226 HOH HOH A . K 6 HOH 220 707 227 HOH HOH A . K 6 HOH 221 708 228 HOH HOH A . K 6 HOH 222 709 229 HOH HOH A . K 6 HOH 223 710 230 HOH HOH A . K 6 HOH 224 711 231 HOH HOH A . K 6 HOH 225 712 232 HOH HOH A . K 6 HOH 226 713 233 HOH HOH A . K 6 HOH 227 714 234 HOH HOH A . K 6 HOH 228 715 235 HOH HOH A . K 6 HOH 229 716 236 HOH HOH A . K 6 HOH 230 717 237 HOH HOH A . K 6 HOH 231 718 238 HOH HOH A . K 6 HOH 232 719 239 HOH HOH A . K 6 HOH 233 720 240 HOH HOH A . K 6 HOH 234 721 241 HOH HOH A . K 6 HOH 235 722 242 HOH HOH A . K 6 HOH 236 723 243 HOH HOH A . K 6 HOH 237 724 244 HOH HOH A . K 6 HOH 238 725 245 HOH HOH A . K 6 HOH 239 726 246 HOH HOH A . K 6 HOH 240 727 247 HOH HOH A . K 6 HOH 241 728 248 HOH HOH A . K 6 HOH 242 729 249 HOH HOH A . K 6 HOH 243 730 250 HOH HOH A . K 6 HOH 244 731 251 HOH HOH A . K 6 HOH 245 732 252 HOH HOH A . K 6 HOH 246 733 253 HOH HOH A . K 6 HOH 247 734 254 HOH HOH A . K 6 HOH 248 735 255 HOH HOH A . K 6 HOH 249 736 256 HOH HOH A . K 6 HOH 250 737 257 HOH HOH A . K 6 HOH 251 738 258 HOH HOH A . K 6 HOH 252 739 259 HOH HOH A . K 6 HOH 253 740 260 HOH HOH A . K 6 HOH 254 741 261 HOH HOH A . K 6 HOH 255 742 262 HOH HOH A . K 6 HOH 256 743 263 HOH HOH A . K 6 HOH 257 744 264 HOH HOH A . K 6 HOH 258 745 265 HOH HOH A . K 6 HOH 259 746 266 HOH HOH A . K 6 HOH 260 747 267 HOH HOH A . K 6 HOH 261 748 268 HOH HOH A . K 6 HOH 262 749 269 HOH HOH A . K 6 HOH 263 750 270 HOH HOH A . K 6 HOH 264 751 271 HOH HOH A . K 6 HOH 265 752 272 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 46 A MSE 68 ? MET SELENOMETHIONINE 2 A MSE 100 A MSE 122 ? MET SELENOMETHIONINE 3 A MSE 198 A MSE 220 ? MET SELENOMETHIONINE 4 A OCS 216 A OCS 238 ? CYS 'CYSTEINESULFONIC ACID' 5 A MSE 272 A MSE 294 ? MET SELENOMETHIONINE 6 A MSE 279 A MSE 301 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3H41 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED CONSTRUCT CONTAINS RESIDUES 24-333 OF THE FULL LENGTH PROTEIN. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A OCS 238 ? ? ND1 A HIS 291 ? A 2.10 2 1 O A HOH 562 ? ? O A HOH 746 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 157 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 PO4 _pdbx_validate_symm_contact.auth_seq_id_2 1 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 88 ? ? -36.32 127.58 2 1 TYR A 166 ? ? -34.08 134.47 3 1 ASN A 167 ? ? 83.98 2.19 4 1 ASP A 176 ? ? -119.92 -163.97 5 1 THR A 231 ? ? -140.99 37.86 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 201 ? CD ? A ARG 179 CD 2 1 Y 1 A ARG 201 ? NE ? A ARG 179 NE 3 1 Y 1 A ARG 201 ? CZ ? A ARG 179 CZ 4 1 Y 1 A ARG 201 ? NH1 ? A ARG 179 NH1 5 1 Y 1 A ARG 201 ? NH2 ? A ARG 179 NH2 6 1 Y 1 A GLU 270 ? CG ? A GLU 248 CG 7 1 Y 1 A GLU 270 ? CD ? A GLU 248 CD 8 1 Y 1 A GLU 270 ? OE1 ? A GLU 248 OE1 9 1 Y 1 A GLU 270 ? OE2 ? A GLU 248 OE2 10 1 N 1 A PG4 3 ? C7 ? F PG4 1 C7 11 1 N 1 A PG4 3 ? C8 ? F PG4 1 C8 12 1 N 1 A PG4 3 ? O5 ? F PG4 1 O5 13 1 N 1 A PG4 4 ? C5 ? G PG4 1 C5 14 1 N 1 A PG4 4 ? C6 ? G PG4 1 C6 15 1 N 1 A PG4 4 ? O4 ? G PG4 1 O4 16 1 N 1 A PG4 4 ? C7 ? G PG4 1 C7 17 1 N 1 A PG4 4 ? C8 ? G PG4 1 C8 18 1 N 1 A PG4 4 ? O5 ? G PG4 1 O5 19 1 N 1 A PG4 5 ? C7 ? H PG4 1 C7 20 1 N 1 A PG4 5 ? C8 ? H PG4 1 C8 21 1 N 1 A PG4 5 ? O5 ? H PG4 1 O5 22 1 N 1 A PG4 7 ? C5 ? J PG4 1 C5 23 1 N 1 A PG4 7 ? C6 ? J PG4 1 C6 24 1 N 1 A PG4 7 ? O4 ? J PG4 1 O4 25 1 N 1 A PG4 7 ? C7 ? J PG4 1 C7 26 1 N 1 A PG4 7 ? C8 ? J PG4 1 C8 27 1 N 1 A PG4 7 ? O5 ? J PG4 1 O5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLU 24 ? A GLU 2 3 1 Y 1 A GLU 25 ? A GLU 3 4 1 Y 1 A LYS 26 ? A LYS 4 5 1 Y 1 A LYS 27 ? A LYS 5 6 1 Y 1 A ASP 28 ? A ASP 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ALANINE ALA 3 'D-GLUTAMIC ACID' DGL 4 'PHOSPHATE ION' PO4 5 'TETRAETHYLENE GLYCOL' PG4 6 water HOH #