data_3HDC # _entry.id 3HDC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3HDC RCSB RCSB052995 WWPDB D_1000052995 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-11211i _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3HDC _pdbx_database_status.recvd_initial_deposition_date 2009-05-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Z.' 1 ? 'Burley, S.K.' 2 0000-0002-2487-9713 'Swaminathan, S.' 3 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 4 ? # _citation.id primary _citation.title 'The crystal structure of thioredoxin protein from Geobacter metallireducens' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Z.' 1 ? primary 'Burley, S.K.' 2 0000-0002-2487-9713 primary 'Swaminathan, S.' 3 ? # _cell.entry_id 3HDC _cell.length_a 63.678 _cell.length_b 63.678 _cell.length_c 94.587 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3HDC _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thioredoxin family protein' 17999.213 1 ? ? ? ? 2 water nat water 18.015 168 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SLAPGKAESDAPLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDE(MSE)PS(MSE)DRLVK SFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLK SLEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLAPGKAESDAPLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAV NVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-11211i # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 LEU n 1 4 ALA n 1 5 PRO n 1 6 GLY n 1 7 LYS n 1 8 ALA n 1 9 GLU n 1 10 SER n 1 11 ASP n 1 12 ALA n 1 13 PRO n 1 14 LEU n 1 15 VAL n 1 16 ARG n 1 17 THR n 1 18 GLY n 1 19 ALA n 1 20 LEU n 1 21 ALA n 1 22 PRO n 1 23 ASN n 1 24 PHE n 1 25 LYS n 1 26 LEU n 1 27 PRO n 1 28 THR n 1 29 LEU n 1 30 SER n 1 31 GLY n 1 32 GLU n 1 33 ASN n 1 34 LYS n 1 35 SER n 1 36 LEU n 1 37 ALA n 1 38 GLN n 1 39 TYR n 1 40 ARG n 1 41 GLY n 1 42 LYS n 1 43 ILE n 1 44 VAL n 1 45 LEU n 1 46 VAL n 1 47 ASN n 1 48 PHE n 1 49 TRP n 1 50 ALA n 1 51 SER n 1 52 TRP n 1 53 CYS n 1 54 PRO n 1 55 TYR n 1 56 CYS n 1 57 ARG n 1 58 ASP n 1 59 GLU n 1 60 MSE n 1 61 PRO n 1 62 SER n 1 63 MSE n 1 64 ASP n 1 65 ARG n 1 66 LEU n 1 67 VAL n 1 68 LYS n 1 69 SER n 1 70 PHE n 1 71 PRO n 1 72 LYS n 1 73 GLY n 1 74 ASP n 1 75 LEU n 1 76 VAL n 1 77 VAL n 1 78 LEU n 1 79 ALA n 1 80 VAL n 1 81 ASN n 1 82 VAL n 1 83 GLU n 1 84 LYS n 1 85 ARG n 1 86 PHE n 1 87 PRO n 1 88 GLU n 1 89 LYS n 1 90 TYR n 1 91 ARG n 1 92 ARG n 1 93 ALA n 1 94 PRO n 1 95 VAL n 1 96 SER n 1 97 PHE n 1 98 ASN n 1 99 PHE n 1 100 LEU n 1 101 SER n 1 102 ASP n 1 103 ALA n 1 104 THR n 1 105 GLY n 1 106 GLN n 1 107 VAL n 1 108 GLN n 1 109 GLN n 1 110 ARG n 1 111 TYR n 1 112 GLY n 1 113 ALA n 1 114 ASN n 1 115 ARG n 1 116 LEU n 1 117 PRO n 1 118 ASP n 1 119 THR n 1 120 PHE n 1 121 ILE n 1 122 VAL n 1 123 ASP n 1 124 ARG n 1 125 LYS n 1 126 GLY n 1 127 ILE n 1 128 ILE n 1 129 ARG n 1 130 GLN n 1 131 ARG n 1 132 VAL n 1 133 THR n 1 134 GLY n 1 135 GLY n 1 136 ILE n 1 137 GLU n 1 138 TRP n 1 139 ASP n 1 140 ALA n 1 141 PRO n 1 142 LYS n 1 143 VAL n 1 144 VAL n 1 145 SER n 1 146 TYR n 1 147 LEU n 1 148 LYS n 1 149 SER n 1 150 LEU n 1 151 GLU n 1 152 GLY n 1 153 HIS n 1 154 HIS n 1 155 HIS n 1 156 HIS n 1 157 HIS n 1 158 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Gmet_1383 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'strain GS-15 / ATCC 53774 / DSM 7210' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter metallireducens GS-15' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269799 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-Codon+RIL-Stratagene' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q39VV7_GEOMG _struct_ref.pdbx_db_accession Q39VV7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;APGKAESDAPLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVE KRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSL ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3HDC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q39VV7 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3HDC MSE A 1 ? UNP Q39VV7 ? ? 'expression tag' 19 1 1 3HDC SER A 2 ? UNP Q39VV7 ? ? 'expression tag' 20 2 1 3HDC LEU A 3 ? UNP Q39VV7 ? ? 'expression tag' 21 3 1 3HDC GLU A 151 ? UNP Q39VV7 ? ? 'expression tag' 169 4 1 3HDC GLY A 152 ? UNP Q39VV7 ? ? 'expression tag' 170 5 1 3HDC HIS A 153 ? UNP Q39VV7 ? ? 'expression tag' 171 6 1 3HDC HIS A 154 ? UNP Q39VV7 ? ? 'expression tag' 172 7 1 3HDC HIS A 155 ? UNP Q39VV7 ? ? 'expression tag' 173 8 1 3HDC HIS A 156 ? UNP Q39VV7 ? ? 'expression tag' 174 9 1 3HDC HIS A 157 ? UNP Q39VV7 ? ? 'expression tag' 175 10 1 3HDC HIS A 158 ? UNP Q39VV7 ? ? 'expression tag' 176 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3HDC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.08 _exptl_crystal.density_percent_sol 60.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 3.5 _exptl_crystal_grow.pdbx_details '0.1 M Citric acid pH 3.5, 3.0 M Sodium chloride, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-04-23 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9788 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9788 # _reflns.entry_id 3HDC _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.77 _reflns.number_obs 21827 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.6 _reflns.B_iso_Wilson_estimate 19.6 _reflns.pdbx_redundancy 11.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.77 _reflns_shell.d_res_low 1.80 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.378 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 11.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1063 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3HDC _refine.ls_number_reflns_obs 21827 _refine.ls_number_reflns_all 22100 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.900 _refine.ls_d_res_high 1.771 _refine.ls_percent_reflns_obs 98.59 _refine.ls_R_factor_obs 0.1798 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1788 _refine.ls_R_factor_R_free 0.1966 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.20 _refine.ls_number_reflns_R_free 1134 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 18.24 _refine.aniso_B[1][1] 2.8818 _refine.aniso_B[2][2] 2.8818 _refine.aniso_B[3][3] -5.7636 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.386 _refine.solvent_model_param_bsol 53.239 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.18 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1186 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 168 _refine_hist.number_atoms_total 1354 _refine_hist.d_res_high 1.771 _refine_hist.d_res_low 35.900 # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.7714 1.8520 2452 0.1645 96.00 0.1966 . . 146 . . . . 'X-RAY DIFFRACTION' . 1.8520 1.9496 2500 0.1591 97.00 0.2029 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.9496 2.0717 2572 0.1609 98.00 0.2071 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.0717 2.2317 2563 0.1649 99.00 0.2058 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.2317 2.4562 2565 0.1757 99.00 0.1894 . . 164 . . . . 'X-RAY DIFFRACTION' . 2.4562 2.8115 2632 0.1947 99.00 0.2397 . . 123 . . . . 'X-RAY DIFFRACTION' . 2.8115 3.5417 2669 0.1831 100.00 0.1897 . . 135 . . . . 'X-RAY DIFFRACTION' . 3.5417 35.9073 2740 0.1810 99.00 0.1747 . . 159 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3HDC _struct.title 'The crystal structure of thioredoxin protein from Geobacter metallireducens' _struct.pdbx_descriptor 'Thioredoxin family protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HDC _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;thioredoxin, Geobacter metallireducens, GS-15, ATCC53774, DSM 7210, 11211i, Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'dimer, the second molecule is generated by the two fold axis: X-Y, -Y, Z+2/3.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 37 ? ARG A 40 ? ALA A 55 ARG A 58 5 ? 4 HELX_P HELX_P2 2 CYS A 53 ? PHE A 70 ? CYS A 71 PHE A 88 1 ? 18 HELX_P HELX_P3 3 PRO A 87 ? ALA A 93 ? PRO A 105 ALA A 111 5 ? 7 HELX_P HELX_P4 4 GLY A 105 ? TYR A 111 ? GLY A 123 TYR A 129 1 ? 7 HELX_P HELX_P5 5 ALA A 140 ? SER A 149 ? ALA A 158 SER A 167 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 59 C ? ? ? 1_555 A MSE 60 N ? ? A GLU 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A MSE 60 C ? ? ? 1_555 A PRO 61 N ? ? A MSE 78 A PRO 79 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale both ? A SER 62 C ? ? ? 1_555 A MSE 63 N ? ? A SER 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? A MSE 63 C ? ? ? 1_555 A ASP 64 N ? ? A MSE 81 A ASP 82 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 116 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 134 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 117 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 135 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.91 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 25 ? PRO A 27 ? LYS A 43 PRO A 45 A 2 ASN A 33 ? SER A 35 ? ASN A 51 SER A 53 B 1 ASN A 98 ? SER A 101 ? ASN A 116 SER A 119 B 2 LEU A 75 ? ASN A 81 ? LEU A 93 ASN A 99 B 3 ILE A 43 ? TRP A 49 ? ILE A 61 TRP A 67 B 4 ASP A 118 ? VAL A 122 ? ASP A 136 VAL A 140 B 5 ILE A 128 ? THR A 133 ? ILE A 146 THR A 151 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 26 ? N LEU A 44 O LYS A 34 ? O LYS A 52 B 1 2 O LEU A 100 ? O LEU A 118 N ASN A 81 ? N ASN A 99 B 2 3 O VAL A 76 ? O VAL A 94 N LEU A 45 ? N LEU A 63 B 3 4 N VAL A 44 ? N VAL A 62 O VAL A 122 ? O VAL A 140 B 4 5 N THR A 119 ? N THR A 137 O VAL A 132 ? O VAL A 150 # _database_PDB_matrix.entry_id 3HDC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3HDC _atom_sites.fract_transf_matrix[1][1] 0.015704 _atom_sites.fract_transf_matrix[1][2] 0.009067 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018133 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010572 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 19 ? ? ? A . n A 1 2 SER 2 20 20 SER SER A . n A 1 3 LEU 3 21 21 LEU LEU A . n A 1 4 ALA 4 22 22 ALA ALA A . n A 1 5 PRO 5 23 23 PRO PRO A . n A 1 6 GLY 6 24 24 GLY GLY A . n A 1 7 LYS 7 25 25 LYS LYS A . n A 1 8 ALA 8 26 26 ALA ALA A . n A 1 9 GLU 9 27 27 GLU GLU A . n A 1 10 SER 10 28 28 SER SER A . n A 1 11 ASP 11 29 29 ASP ASP A . n A 1 12 ALA 12 30 30 ALA ALA A . n A 1 13 PRO 13 31 31 PRO PRO A . n A 1 14 LEU 14 32 32 LEU LEU A . n A 1 15 VAL 15 33 33 VAL VAL A . n A 1 16 ARG 16 34 34 ARG ARG A . n A 1 17 THR 17 35 35 THR THR A . n A 1 18 GLY 18 36 36 GLY GLY A . n A 1 19 ALA 19 37 37 ALA ALA A . n A 1 20 LEU 20 38 38 LEU LEU A . n A 1 21 ALA 21 39 39 ALA ALA A . n A 1 22 PRO 22 40 40 PRO PRO A . n A 1 23 ASN 23 41 41 ASN ASN A . n A 1 24 PHE 24 42 42 PHE PHE A . n A 1 25 LYS 25 43 43 LYS LYS A . n A 1 26 LEU 26 44 44 LEU LEU A . n A 1 27 PRO 27 45 45 PRO PRO A . n A 1 28 THR 28 46 46 THR THR A . n A 1 29 LEU 29 47 47 LEU LEU A . n A 1 30 SER 30 48 48 SER SER A . n A 1 31 GLY 31 49 49 GLY GLY A . n A 1 32 GLU 32 50 50 GLU GLU A . n A 1 33 ASN 33 51 51 ASN ASN A . n A 1 34 LYS 34 52 52 LYS LYS A . n A 1 35 SER 35 53 53 SER SER A . n A 1 36 LEU 36 54 54 LEU LEU A . n A 1 37 ALA 37 55 55 ALA ALA A . n A 1 38 GLN 38 56 56 GLN GLN A . n A 1 39 TYR 39 57 57 TYR TYR A . n A 1 40 ARG 40 58 58 ARG ARG A . n A 1 41 GLY 41 59 59 GLY GLY A . n A 1 42 LYS 42 60 60 LYS LYS A . n A 1 43 ILE 43 61 61 ILE ILE A . n A 1 44 VAL 44 62 62 VAL VAL A . n A 1 45 LEU 45 63 63 LEU LEU A . n A 1 46 VAL 46 64 64 VAL VAL A . n A 1 47 ASN 47 65 65 ASN ASN A . n A 1 48 PHE 48 66 66 PHE PHE A . n A 1 49 TRP 49 67 67 TRP TRP A . n A 1 50 ALA 50 68 68 ALA ALA A . n A 1 51 SER 51 69 69 SER SER A . n A 1 52 TRP 52 70 70 TRP TRP A . n A 1 53 CYS 53 71 71 CYS CYS A . n A 1 54 PRO 54 72 72 PRO PRO A . n A 1 55 TYR 55 73 73 TYR TYR A . n A 1 56 CYS 56 74 74 CYS CYS A . n A 1 57 ARG 57 75 75 ARG ARG A . n A 1 58 ASP 58 76 76 ASP ASP A . n A 1 59 GLU 59 77 77 GLU GLU A . n A 1 60 MSE 60 78 78 MSE MSE A . n A 1 61 PRO 61 79 79 PRO PRO A . n A 1 62 SER 62 80 80 SER SER A . n A 1 63 MSE 63 81 81 MSE MSE A . n A 1 64 ASP 64 82 82 ASP ASP A . n A 1 65 ARG 65 83 83 ARG ARG A . n A 1 66 LEU 66 84 84 LEU LEU A . n A 1 67 VAL 67 85 85 VAL VAL A . n A 1 68 LYS 68 86 86 LYS LYS A . n A 1 69 SER 69 87 87 SER SER A . n A 1 70 PHE 70 88 88 PHE PHE A . n A 1 71 PRO 71 89 89 PRO PRO A . n A 1 72 LYS 72 90 90 LYS LYS A . n A 1 73 GLY 73 91 91 GLY GLY A . n A 1 74 ASP 74 92 92 ASP ASP A . n A 1 75 LEU 75 93 93 LEU LEU A . n A 1 76 VAL 76 94 94 VAL VAL A . n A 1 77 VAL 77 95 95 VAL VAL A . n A 1 78 LEU 78 96 96 LEU LEU A . n A 1 79 ALA 79 97 97 ALA ALA A . n A 1 80 VAL 80 98 98 VAL VAL A . n A 1 81 ASN 81 99 99 ASN ASN A . n A 1 82 VAL 82 100 100 VAL VAL A . n A 1 83 GLU 83 101 101 GLU GLU A . n A 1 84 LYS 84 102 102 LYS LYS A . n A 1 85 ARG 85 103 103 ARG ARG A . n A 1 86 PHE 86 104 104 PHE PHE A . n A 1 87 PRO 87 105 105 PRO PRO A . n A 1 88 GLU 88 106 106 GLU GLU A . n A 1 89 LYS 89 107 107 LYS LYS A . n A 1 90 TYR 90 108 108 TYR TYR A . n A 1 91 ARG 91 109 109 ARG ARG A . n A 1 92 ARG 92 110 110 ARG ARG A . n A 1 93 ALA 93 111 111 ALA ALA A . n A 1 94 PRO 94 112 112 PRO PRO A . n A 1 95 VAL 95 113 113 VAL VAL A . n A 1 96 SER 96 114 114 SER SER A . n A 1 97 PHE 97 115 115 PHE PHE A . n A 1 98 ASN 98 116 116 ASN ASN A . n A 1 99 PHE 99 117 117 PHE PHE A . n A 1 100 LEU 100 118 118 LEU LEU A . n A 1 101 SER 101 119 119 SER SER A . n A 1 102 ASP 102 120 120 ASP ASP A . n A 1 103 ALA 103 121 121 ALA ALA A . n A 1 104 THR 104 122 122 THR THR A . n A 1 105 GLY 105 123 123 GLY GLY A . n A 1 106 GLN 106 124 124 GLN GLN A . n A 1 107 VAL 107 125 125 VAL VAL A . n A 1 108 GLN 108 126 126 GLN GLN A . n A 1 109 GLN 109 127 127 GLN GLN A . n A 1 110 ARG 110 128 128 ARG ARG A . n A 1 111 TYR 111 129 129 TYR TYR A . n A 1 112 GLY 112 130 130 GLY GLY A . n A 1 113 ALA 113 131 131 ALA ALA A . n A 1 114 ASN 114 132 132 ASN ASN A . n A 1 115 ARG 115 133 133 ARG ARG A . n A 1 116 LEU 116 134 134 LEU LEU A . n A 1 117 PRO 117 135 135 PRO PRO A . n A 1 118 ASP 118 136 136 ASP ASP A . n A 1 119 THR 119 137 137 THR THR A . n A 1 120 PHE 120 138 138 PHE PHE A . n A 1 121 ILE 121 139 139 ILE ILE A . n A 1 122 VAL 122 140 140 VAL VAL A . n A 1 123 ASP 123 141 141 ASP ASP A . n A 1 124 ARG 124 142 142 ARG ARG A . n A 1 125 LYS 125 143 143 LYS LYS A . n A 1 126 GLY 126 144 144 GLY GLY A . n A 1 127 ILE 127 145 145 ILE ILE A . n A 1 128 ILE 128 146 146 ILE ILE A . n A 1 129 ARG 129 147 147 ARG ARG A . n A 1 130 GLN 130 148 148 GLN GLN A . n A 1 131 ARG 131 149 149 ARG ARG A . n A 1 132 VAL 132 150 150 VAL VAL A . n A 1 133 THR 133 151 151 THR THR A . n A 1 134 GLY 134 152 152 GLY GLY A . n A 1 135 GLY 135 153 153 GLY GLY A . n A 1 136 ILE 136 154 154 ILE ILE A . n A 1 137 GLU 137 155 155 GLU GLU A . n A 1 138 TRP 138 156 156 TRP TRP A . n A 1 139 ASP 139 157 157 ASP ASP A . n A 1 140 ALA 140 158 158 ALA ALA A . n A 1 141 PRO 141 159 159 PRO PRO A . n A 1 142 LYS 142 160 160 LYS LYS A . n A 1 143 VAL 143 161 161 VAL VAL A . n A 1 144 VAL 144 162 162 VAL VAL A . n A 1 145 SER 145 163 163 SER SER A . n A 1 146 TYR 146 164 164 TYR TYR A . n A 1 147 LEU 147 165 165 LEU LEU A . n A 1 148 LYS 148 166 166 LYS LYS A . n A 1 149 SER 149 167 167 SER SER A . n A 1 150 LEU 150 168 168 LEU LEU A . n A 1 151 GLU 151 169 169 GLU GLU A . n A 1 152 GLY 152 170 ? ? ? A . n A 1 153 HIS 153 171 ? ? ? A . n A 1 154 HIS 154 172 ? ? ? A . n A 1 155 HIS 155 173 ? ? ? A . n A 1 156 HIS 156 174 ? ? ? A . n A 1 157 HIS 157 175 ? ? ? A . n A 1 158 HIS 158 176 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 177 19 HOH HOH A . B 2 HOH 20 178 20 HOH HOH A . B 2 HOH 21 179 21 HOH HOH A . B 2 HOH 22 180 22 HOH HOH A . B 2 HOH 23 181 23 HOH HOH A . B 2 HOH 24 182 24 HOH HOH A . B 2 HOH 25 183 25 HOH HOH A . B 2 HOH 26 184 26 HOH HOH A . B 2 HOH 27 185 27 HOH HOH A . B 2 HOH 28 186 28 HOH HOH A . B 2 HOH 29 187 29 HOH HOH A . B 2 HOH 30 188 30 HOH HOH A . B 2 HOH 31 189 31 HOH HOH A . B 2 HOH 32 190 32 HOH HOH A . B 2 HOH 33 191 33 HOH HOH A . B 2 HOH 34 192 34 HOH HOH A . B 2 HOH 35 193 35 HOH HOH A . B 2 HOH 36 194 36 HOH HOH A . B 2 HOH 37 195 37 HOH HOH A . B 2 HOH 38 196 38 HOH HOH A . B 2 HOH 39 197 39 HOH HOH A . B 2 HOH 40 198 40 HOH HOH A . B 2 HOH 41 199 41 HOH HOH A . B 2 HOH 42 200 42 HOH HOH A . B 2 HOH 43 201 43 HOH HOH A . B 2 HOH 44 202 44 HOH HOH A . B 2 HOH 45 203 45 HOH HOH A . B 2 HOH 46 204 46 HOH HOH A . B 2 HOH 47 205 47 HOH HOH A . B 2 HOH 48 206 48 HOH HOH A . B 2 HOH 49 207 49 HOH HOH A . B 2 HOH 50 208 50 HOH HOH A . B 2 HOH 51 209 51 HOH HOH A . B 2 HOH 52 210 52 HOH HOH A . B 2 HOH 53 211 53 HOH HOH A . B 2 HOH 54 212 54 HOH HOH A . B 2 HOH 55 213 55 HOH HOH A . B 2 HOH 56 214 56 HOH HOH A . B 2 HOH 57 215 57 HOH HOH A . B 2 HOH 58 216 58 HOH HOH A . B 2 HOH 59 217 59 HOH HOH A . B 2 HOH 60 218 60 HOH HOH A . B 2 HOH 61 219 61 HOH HOH A . B 2 HOH 62 220 62 HOH HOH A . B 2 HOH 63 221 63 HOH HOH A . B 2 HOH 64 222 64 HOH HOH A . B 2 HOH 65 223 65 HOH HOH A . B 2 HOH 66 224 66 HOH HOH A . B 2 HOH 67 225 67 HOH HOH A . B 2 HOH 68 226 68 HOH HOH A . B 2 HOH 69 227 69 HOH HOH A . B 2 HOH 70 228 70 HOH HOH A . B 2 HOH 71 229 71 HOH HOH A . B 2 HOH 72 230 72 HOH HOH A . B 2 HOH 73 231 73 HOH HOH A . B 2 HOH 74 232 74 HOH HOH A . B 2 HOH 75 233 75 HOH HOH A . B 2 HOH 76 234 76 HOH HOH A . B 2 HOH 77 235 77 HOH HOH A . B 2 HOH 78 236 78 HOH HOH A . B 2 HOH 79 237 79 HOH HOH A . B 2 HOH 80 238 80 HOH HOH A . B 2 HOH 81 239 81 HOH HOH A . B 2 HOH 82 240 82 HOH HOH A . B 2 HOH 83 241 83 HOH HOH A . B 2 HOH 84 242 84 HOH HOH A . B 2 HOH 85 243 85 HOH HOH A . B 2 HOH 86 244 86 HOH HOH A . B 2 HOH 87 245 87 HOH HOH A . B 2 HOH 88 246 88 HOH HOH A . B 2 HOH 89 247 89 HOH HOH A . B 2 HOH 90 248 90 HOH HOH A . B 2 HOH 91 249 91 HOH HOH A . B 2 HOH 92 250 92 HOH HOH A . B 2 HOH 93 251 93 HOH HOH A . B 2 HOH 94 252 94 HOH HOH A . B 2 HOH 95 253 95 HOH HOH A . B 2 HOH 96 254 97 HOH HOH A . B 2 HOH 97 255 98 HOH HOH A . B 2 HOH 98 256 99 HOH HOH A . B 2 HOH 99 257 100 HOH HOH A . B 2 HOH 100 258 101 HOH HOH A . B 2 HOH 101 259 102 HOH HOH A . B 2 HOH 102 260 103 HOH HOH A . B 2 HOH 103 261 104 HOH HOH A . B 2 HOH 104 262 105 HOH HOH A . B 2 HOH 105 263 106 HOH HOH A . B 2 HOH 106 264 107 HOH HOH A . B 2 HOH 107 265 108 HOH HOH A . B 2 HOH 108 266 109 HOH HOH A . B 2 HOH 109 267 110 HOH HOH A . B 2 HOH 110 268 111 HOH HOH A . B 2 HOH 111 269 112 HOH HOH A . B 2 HOH 112 270 113 HOH HOH A . B 2 HOH 113 271 114 HOH HOH A . B 2 HOH 114 272 115 HOH HOH A . B 2 HOH 115 273 116 HOH HOH A . B 2 HOH 116 274 117 HOH HOH A . B 2 HOH 117 275 118 HOH HOH A . B 2 HOH 118 276 120 HOH HOH A . B 2 HOH 119 277 121 HOH HOH A . B 2 HOH 120 278 122 HOH HOH A . B 2 HOH 121 279 123 HOH HOH A . B 2 HOH 122 280 125 HOH HOH A . B 2 HOH 123 281 126 HOH HOH A . B 2 HOH 124 282 127 HOH HOH A . B 2 HOH 125 283 128 HOH HOH A . B 2 HOH 126 284 129 HOH HOH A . B 2 HOH 127 285 130 HOH HOH A . B 2 HOH 128 286 131 HOH HOH A . B 2 HOH 129 287 132 HOH HOH A . B 2 HOH 130 288 133 HOH HOH A . B 2 HOH 131 289 134 HOH HOH A . B 2 HOH 132 290 135 HOH HOH A . B 2 HOH 133 291 136 HOH HOH A . B 2 HOH 134 292 137 HOH HOH A . B 2 HOH 135 293 138 HOH HOH A . B 2 HOH 136 294 140 HOH HOH A . B 2 HOH 137 295 141 HOH HOH A . B 2 HOH 138 296 142 HOH HOH A . B 2 HOH 139 297 143 HOH HOH A . B 2 HOH 140 298 144 HOH HOH A . B 2 HOH 141 299 145 HOH HOH A . B 2 HOH 142 300 146 HOH HOH A . B 2 HOH 143 301 147 HOH HOH A . B 2 HOH 144 302 148 HOH HOH A . B 2 HOH 145 303 149 HOH HOH A . B 2 HOH 146 304 150 HOH HOH A . B 2 HOH 147 305 151 HOH HOH A . B 2 HOH 148 306 152 HOH HOH A . B 2 HOH 149 307 153 HOH HOH A . B 2 HOH 150 308 154 HOH HOH A . B 2 HOH 151 309 155 HOH HOH A . B 2 HOH 152 310 156 HOH HOH A . B 2 HOH 153 311 157 HOH HOH A . B 2 HOH 154 312 158 HOH HOH A . B 2 HOH 155 313 159 HOH HOH A . B 2 HOH 156 314 160 HOH HOH A . B 2 HOH 157 315 161 HOH HOH A . B 2 HOH 158 316 162 HOH HOH A . B 2 HOH 159 317 163 HOH HOH A . B 2 HOH 160 318 167 HOH HOH A . B 2 HOH 161 319 168 HOH HOH A . B 2 HOH 162 320 169 HOH HOH A . B 2 HOH 163 321 170 HOH HOH A . B 2 HOH 164 322 171 HOH HOH A . B 2 HOH 165 323 172 HOH HOH A . B 2 HOH 166 324 173 HOH HOH A . B 2 HOH 167 325 174 HOH HOH A . B 2 HOH 168 326 175 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 60 A MSE 78 ? MET SELENOMETHIONINE 2 A MSE 63 A MSE 81 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2740 ? 1 MORE -10 ? 1 'SSA (A^2)' 15160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 63.0580000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-11-13 4 'Structure model' 1 3 2021-02-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' struct_conn 2 3 'Structure model' struct_keywords 3 4 'Structure model' audit_author 4 4 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 2 3 'Structure model' '_struct_keywords.text' 3 4 'Structure model' '_audit_author.identifier_ORCID' 4 4 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 114 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -92.93 _pdbx_validate_torsion.psi 55.77 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 19 ? A MSE 1 2 1 Y 1 A GLY 170 ? A GLY 152 3 1 Y 1 A HIS 171 ? A HIS 153 4 1 Y 1 A HIS 172 ? A HIS 154 5 1 Y 1 A HIS 173 ? A HIS 155 6 1 Y 1 A HIS 174 ? A HIS 156 7 1 Y 1 A HIS 175 ? A HIS 157 8 1 Y 1 A HIS 176 ? A HIS 158 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #