data_3HQG # _entry.id 3HQG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3HQG pdb_00003hqg 10.2210/pdb3hqg/pdb NDB NA0040 ? ? RCSB RCSB053456 ? ? WWPDB D_1000053456 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1na6 EcoRII-R88A unspecified PDB 3HQF . unspecified # _pdbx_database_status.entry_id 3HQG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Golovenko, D.' 1 'Manakova, E.' 2 'Grazulis, S.' 3 'Tamulaitiene, G.' 4 'Siksnys, V.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII. ; 'Nucleic Acids Res.' 37 6613 6624 2009 NARHAD UK 0305-1048 0389 ? 19729506 10.1093/nar/gkp699 1 'Crystal structure of type iie restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold' J.Mol.Biol. 335 307 319 2004 JMOBAK UK 0022-2836 0070 ? 14659759 10.1016/j.jmb.2003.10.030 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Golovenko, D.' 1 ? primary 'Manakova, E.' 2 ? primary 'Tamulaitiene, G.' 3 ? primary 'Grazulis, S.' 4 ? primary 'Siksnys, V.' 5 ? 1 'Zhou, X.E.' 6 ? 1 'Wang, Y.' 7 ? 1 'Reuter, M.' 8 ? 1 'Mucke, M.' 9 ? 1 'Kruger, D.H.' 10 ? 1 'Meehan, E.J.' 11 ? 1 'Chen, L.' 12 ? # _cell.entry_id 3HQG _cell.length_a 77.054 _cell.length_b 57.971 _cell.length_c 61.010 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3HQG _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Type-2 restriction enzyme EcoRII' 25577.191 1 3.1.21.4 ? 'C-terminal catalytic domain (UNP residues 183-404)' ? 2 polymer syn "5'-D(*TP*CP*GP*AP*CP*CP*AP*GP*GP*CP*TP*A)-3'" 3647.393 1 ? ? ? ? 3 polymer syn "5'-D(*TP*AP*GP*CP*CP*TP*GP*GP*TP*CP*GP*A)-3'" 3678.403 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'R.EcoRII, Type II restriction enzyme EcoRII, Endonuclease EcoRII' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;YILPEDWHLRFPSGSEIIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGSVDEFIALANSVSNRR KSRAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKIH QVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTGLYADIP ; ;YILPEDWHLRFPSGSEIIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGSVDEFIALANSVSNRR KSRAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKIH QVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTGLYADIP ; A ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DA)(DC)(DC)(DA)(DG)(DG)(DC)(DT)(DA)' TCGACCAGGCTA B ? 3 polydeoxyribonucleotide no no '(DT)(DA)(DG)(DC)(DC)(DT)(DG)(DG)(DT)(DC)(DG)(DA)' TAGCCTGGTCGA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 ILE n 1 3 LEU n 1 4 PRO n 1 5 GLU n 1 6 ASP n 1 7 TRP n 1 8 HIS n 1 9 LEU n 1 10 ARG n 1 11 PHE n 1 12 PRO n 1 13 SER n 1 14 GLY n 1 15 SER n 1 16 GLU n 1 17 ILE n 1 18 ILE n 1 19 GLN n 1 20 TYR n 1 21 ALA n 1 22 ALA n 1 23 SER n 1 24 HIS n 1 25 TYR n 1 26 VAL n 1 27 LYS n 1 28 ASN n 1 29 SER n 1 30 LEU n 1 31 ASP n 1 32 PRO n 1 33 ASP n 1 34 GLU n 1 35 GLN n 1 36 LEU n 1 37 LEU n 1 38 ASP n 1 39 ARG n 1 40 ARG n 1 41 ARG n 1 42 VAL n 1 43 GLU n 1 44 TYR n 1 45 ASP n 1 46 ILE n 1 47 PHE n 1 48 LEU n 1 49 LEU n 1 50 VAL n 1 51 GLU n 1 52 GLU n 1 53 LEU n 1 54 HIS n 1 55 VAL n 1 56 LEU n 1 57 ASP n 1 58 ILE n 1 59 ILE n 1 60 ARG n 1 61 LYS n 1 62 GLY n 1 63 PHE n 1 64 GLY n 1 65 SER n 1 66 VAL n 1 67 ASP n 1 68 GLU n 1 69 PHE n 1 70 ILE n 1 71 ALA n 1 72 LEU n 1 73 ALA n 1 74 ASN n 1 75 SER n 1 76 VAL n 1 77 SER n 1 78 ASN n 1 79 ARG n 1 80 ARG n 1 81 LYS n 1 82 SER n 1 83 ARG n 1 84 ALA n 1 85 GLY n 1 86 LYS n 1 87 SER n 1 88 LEU n 1 89 GLU n 1 90 LEU n 1 91 HIS n 1 92 LEU n 1 93 GLU n 1 94 HIS n 1 95 LEU n 1 96 PHE n 1 97 ILE n 1 98 GLU n 1 99 HIS n 1 100 GLY n 1 101 LEU n 1 102 ARG n 1 103 HIS n 1 104 PHE n 1 105 ALA n 1 106 THR n 1 107 GLN n 1 108 ALA n 1 109 ILE n 1 110 THR n 1 111 GLU n 1 112 GLY n 1 113 ASN n 1 114 LYS n 1 115 LYS n 1 116 PRO n 1 117 ASP n 1 118 PHE n 1 119 LEU n 1 120 PHE n 1 121 PRO n 1 122 SER n 1 123 ALA n 1 124 GLY n 1 125 ALA n 1 126 TYR n 1 127 HIS n 1 128 ASP n 1 129 THR n 1 130 GLU n 1 131 PHE n 1 132 PRO n 1 133 VAL n 1 134 GLU n 1 135 ASN n 1 136 LEU n 1 137 ARG n 1 138 MET n 1 139 LEU n 1 140 ALA n 1 141 VAL n 1 142 LYS n 1 143 THR n 1 144 THR n 1 145 CYS n 1 146 LYS n 1 147 ASP n 1 148 ARG n 1 149 TRP n 1 150 ARG n 1 151 GLN n 1 152 ILE n 1 153 LEU n 1 154 ASN n 1 155 GLU n 1 156 ALA n 1 157 ASP n 1 158 LYS n 1 159 ILE n 1 160 HIS n 1 161 GLN n 1 162 VAL n 1 163 HIS n 1 164 LEU n 1 165 PHE n 1 166 THR n 1 167 LEU n 1 168 GLN n 1 169 GLU n 1 170 GLY n 1 171 VAL n 1 172 SER n 1 173 LEU n 1 174 ALA n 1 175 GLN n 1 176 TYR n 1 177 ARG n 1 178 GLU n 1 179 MET n 1 180 ARG n 1 181 GLU n 1 182 SER n 1 183 GLY n 1 184 VAL n 1 185 ARG n 1 186 LEU n 1 187 VAL n 1 188 VAL n 1 189 PRO n 1 190 SER n 1 191 SER n 1 192 LEU n 1 193 HIS n 1 194 LYS n 1 195 LYS n 1 196 TYR n 1 197 PRO n 1 198 GLU n 1 199 ALA n 1 200 VAL n 1 201 ARG n 1 202 ALA n 1 203 GLU n 1 204 LEU n 1 205 MET n 1 206 THR n 1 207 LEU n 1 208 GLY n 1 209 ALA n 1 210 PHE n 1 211 ILE n 1 212 ALA n 1 213 GLU n 1 214 LEU n 1 215 THR n 1 216 GLY n 1 217 LEU n 1 218 TYR n 1 219 ALA n 1 220 ASP n 1 221 ILE n 1 222 PRO n 2 1 DT n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 DC n 2 7 DA n 2 8 DG n 2 9 DG n 2 10 DC n 2 11 DT n 2 12 DA n 3 1 DT n 3 2 DA n 3 3 DG n 3 4 DC n 3 5 DC n 3 6 DT n 3 7 DG n 3 8 DG n 3 9 DT n 3 10 DC n 3 11 DG n 3 12 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ECORII, ecoRIIR' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM109 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PQE30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP T2E2_ECOLX P14633 1 ;YILPEDWHLRFPSGSEIIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGSVDEFIALANSVSNRR KSRAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKIH QVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTGLYADIP ; 183 ? 2 PDB 3HQG 3HQG 2 TCGACCAGGCTA -6 ? 3 PDB 3HQG 3HQG 3 TAGCCTGGTCGA -5 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3HQG A 1 ? 222 ? P14633 183 ? 404 ? 183 404 2 2 3HQG B 1 ? 12 ? 3HQG -6 ? 5 ? -6 5 3 3 3HQG C 1 ? 12 ? 3HQG -5 ? 6 ? -5 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3HQG _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 40.60 _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '26% PEG1500, 25% glycerol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2006-11-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si (111), horizontally focussing' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8080 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X13' _diffrn_source.pdbx_wavelength_list 0.8080 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X13 # _reflns.entry_id 3HQG _reflns.d_resolution_high 2.110 _reflns.d_resolution_low 47.836 _reflns.number_all ? _reflns.number_obs 8835 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_netI_over_sigmaI 12.410 _reflns.pdbx_Rsym_value 0.047 _reflns.pdbx_redundancy 11.700 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.B_iso_Wilson_estimate 72 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.60 2.74 ? 14992 ? 0.330 2.3 0.330 ? 12.00 ? 1254 99.80 1 1 2.74 2.91 ? 14296 ? 0.217 3.5 0.217 ? 11.90 ? 1205 99.70 2 1 2.91 3.11 ? 13390 ? 0.133 5.6 0.133 ? 11.90 ? 1123 99.90 3 1 3.11 3.36 ? 12485 ? 0.078 9.2 0.078 ? 11.90 ? 1053 99.90 4 1 3.36 3.68 ? 11439 ? 0.053 13.2 0.053 ? 11.80 ? 972 99.80 5 1 3.68 4.11 ? 10502 ? 0.038 17.6 0.038 ? 11.70 ? 895 99.80 6 1 4.11 4.75 ? 9154 ? 0.030 19.3 0.030 ? 11.60 ? 789 100.00 7 1 4.75 5.81 ? 7686 ? 0.028 22.5 0.028 ? 11.40 ? 677 99.90 8 1 5.81 8.22 ? 6071 ? 0.026 23.2 0.026 ? 11.10 ? 546 99.80 9 1 8.22 47.84 ? 3114 ? 0.028 18.4 0.028 ? 9.70 ? 321 98.00 10 1 # _refine.entry_id 3HQG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.600 _refine.ls_d_res_low 47.840 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.540 _refine.ls_number_reflns_obs 8810 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.242 _refine.ls_R_factor_R_work 0.236 _refine.ls_wR_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.293 _refine.ls_wR_factor_R_free 0.290 _refine.ls_percent_reflns_R_free 9.500 _refine.ls_number_reflns_R_free 834 _refine.ls_number_reflns_R_work 7976 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 45.712 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.140 _refine.aniso_B[2][2] -2.880 _refine.aniso_B[3][3] 0.740 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.920 _refine.correlation_coeff_Fo_to_Fc_free 0.875 _refine.overall_SU_R_Cruickshank_DPI 0.365 _refine.overall_SU_R_free 0.430 _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.430 _refine.overall_SU_ML 0.346 _refine.overall_SU_B 35.862 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1NA6' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.766 _refine.B_iso_max 90.36 _refine.B_iso_min 5.97 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.00 _refine.occupancy_min 0.01 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1806 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 2365 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 47.840 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 2594 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3352 1.012 2.220 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 223 4.750 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 94 33.714 23.191 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 326 18.640 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 16 16.024 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 369 0.064 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1666 0.003 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1111 0.286 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1793 0.551 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1483 0.522 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 1558 0.930 4.500 ? ? # _refine_ls_shell.d_res_high 2.600 _refine_ls_shell.d_res_low 2.667 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.220 _refine_ls_shell.number_reflns_R_work 580 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.366 _refine_ls_shell.R_factor_R_free 0.552 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 640 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3HQG _struct.title 'Crystal structure of restriction endonuclease EcoRII catalytic C-terminal domain in complex with cognate DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3HQG _struct_keywords.text ;restriction endonuclease, EcoRII, nucleotide flipping, protein-DNA complex, DNA recognition, Endonuclease, Hydrolase, Magnesium, Nuclease, Restriction system, HYDROLASE-DNA COMPLEX ; _struct_keywords.pdbx_keywords HYDROLASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details 'The second part of the biological assembly is generated by the two fold axis: -x+1, -y, z.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 4 ? HIS A 8 ? PRO A 186 HIS A 190 5 ? 5 HELX_P HELX_P2 2 SER A 13 ? SER A 23 ? SER A 195 SER A 205 1 ? 11 HELX_P HELX_P3 3 ASP A 31 ? LYS A 61 ? ASP A 213 LYS A 243 1 ? 31 HELX_P HELX_P4 4 SER A 65 ? HIS A 99 ? SER A 247 HIS A 281 1 ? 35 HELX_P HELX_P5 5 SER A 122 ? ASP A 128 ? SER A 304 ASP A 310 1 ? 7 HELX_P HELX_P6 6 PRO A 132 ? LEU A 136 ? PRO A 314 LEU A 318 5 ? 5 HELX_P HELX_P7 7 CYS A 145 ? ALA A 156 ? CYS A 327 ALA A 338 5 ? 12 HELX_P HELX_P8 8 SER A 172 ? SER A 182 ? SER A 354 SER A 364 1 ? 11 HELX_P HELX_P9 9 PRO A 189 ? TYR A 196 ? PRO A 371 TYR A 378 5 ? 8 HELX_P HELX_P10 10 PRO A 197 ? ALA A 202 ? PRO A 379 ALA A 384 1 ? 6 HELX_P HELX_P11 11 THR A 206 ? TYR A 218 ? THR A 388 TYR A 400 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DT 1 O2 B ? ? 1_555 C DG 11 N2 B ? C DT -5 C DG 5 2_655 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog2 hydrog ? ? C DA 2 N1 B ? ? 1_555 C DC 10 N4 B ? C DA -4 C DC 4 2_655 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog3 hydrog ? ? C DG 3 N1 B ? ? 1_555 C DT 9 O4 B ? C DG -3 C DT 3 2_655 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog4 hydrog ? ? C DC 4 N3 B ? ? 1_555 C DG 8 N1 B ? C DC -2 C DG 2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 4 N4 B ? ? 1_555 C DG 8 O6 B ? C DC -2 C DG 2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 4 O2 B ? ? 1_555 C DG 8 N2 B ? C DC -2 C DG 2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 5 N3 B ? ? 1_555 C DG 7 N1 B ? C DC -1 C DG 1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 5 N4 B ? ? 1_555 C DG 7 O6 B ? C DC -1 C DG 1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 5 O2 B ? ? 1_555 C DG 7 N2 B ? C DC -1 C DG 1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 7 N1 B ? ? 1_555 C DC 5 N3 B ? C DG 1 C DC -1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DG 7 N2 B ? ? 1_555 C DC 5 O2 B ? C DG 1 C DC -1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 7 O6 B ? ? 1_555 C DC 5 N4 B ? C DG 1 C DC -1 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DG 8 N1 B ? ? 1_555 C DC 4 N3 B ? C DG 2 C DC -2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DG 8 N2 B ? ? 1_555 C DC 4 O2 B ? C DG 2 C DC -2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DG 8 O6 B ? ? 1_555 C DC 4 N4 B ? C DG 2 C DC -2 2_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DT 9 O2 B ? ? 1_555 C DG 3 N2 B ? C DT 3 C DG -3 2_655 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog17 hydrog ? ? C DC 10 N4 B ? ? 1_555 C DA 2 N1 B ? C DC 4 C DA -4 2_655 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog18 hydrog ? ? C DG 11 N2 B ? ? 1_555 C DT 1 O2 B ? C DG 5 C DT -5 2_655 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 27 A . ? LYS 209 A ASN 28 A ? ASN 210 A 1 0.83 2 PHE 120 A . ? PHE 302 A PRO 121 A ? PRO 303 A 1 -3.02 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 118 ? PHE A 120 ? PHE A 300 PHE A 302 A 2 ARG A 137 ? LYS A 142 ? ARG A 319 LYS A 324 A 3 VAL A 162 ? THR A 166 ? VAL A 344 THR A 348 A 4 VAL A 184 ? VAL A 187 ? VAL A 366 VAL A 369 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 120 ? N PHE A 302 O ARG A 137 ? O ARG A 319 A 2 3 N ALA A 140 ? N ALA A 322 O PHE A 165 ? O PHE A 347 A 3 4 N LEU A 164 ? N LEU A 346 O ARG A 185 ? O ARG A 367 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LYS A 146 ? LYS A 328 . ? 1_555 ? 2 AC1 5 DG B 8 ? DG B 1 . ? 1_555 ? 3 AC1 5 DG B 9 ? DG B 2 . ? 1_555 ? 4 AC1 5 DG C 7 ? DG C 1 . ? 1_555 ? 5 AC1 5 DG C 8 ? DG C 2 . ? 1_555 ? # _atom_sites.entry_id 3HQG _atom_sites.fract_transf_matrix[1][1] 0.012978 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017250 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016391 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 183 183 TYR TYR A . n A 1 2 ILE 2 184 184 ILE ILE A . n A 1 3 LEU 3 185 185 LEU LEU A . n A 1 4 PRO 4 186 186 PRO PRO A . n A 1 5 GLU 5 187 187 GLU GLU A . n A 1 6 ASP 6 188 188 ASP ASP A . n A 1 7 TRP 7 189 189 TRP TRP A . n A 1 8 HIS 8 190 190 HIS HIS A . n A 1 9 LEU 9 191 191 LEU LEU A . n A 1 10 ARG 10 192 192 ARG ARG A . n A 1 11 PHE 11 193 193 PHE PHE A . n A 1 12 PRO 12 194 194 PRO PRO A . n A 1 13 SER 13 195 195 SER SER A . n A 1 14 GLY 14 196 196 GLY GLY A . n A 1 15 SER 15 197 197 SER SER A . n A 1 16 GLU 16 198 198 GLU GLU A . n A 1 17 ILE 17 199 199 ILE ILE A . n A 1 18 ILE 18 200 200 ILE ILE A . n A 1 19 GLN 19 201 201 GLN GLN A . n A 1 20 TYR 20 202 202 TYR TYR A . n A 1 21 ALA 21 203 203 ALA ALA A . n A 1 22 ALA 22 204 204 ALA ALA A . n A 1 23 SER 23 205 205 SER SER A . n A 1 24 HIS 24 206 206 HIS HIS A . n A 1 25 TYR 25 207 207 TYR TYR A . n A 1 26 VAL 26 208 208 VAL VAL A . n A 1 27 LYS 27 209 209 LYS LYS A . n A 1 28 ASN 28 210 210 ASN ASN A . n A 1 29 SER 29 211 211 SER SER A . n A 1 30 LEU 30 212 212 LEU LEU A . n A 1 31 ASP 31 213 213 ASP ASP A . n A 1 32 PRO 32 214 214 PRO PRO A . n A 1 33 ASP 33 215 215 ASP ASP A . n A 1 34 GLU 34 216 216 GLU GLU A . n A 1 35 GLN 35 217 217 GLN GLN A . n A 1 36 LEU 36 218 218 LEU LEU A . n A 1 37 LEU 37 219 219 LEU LEU A . n A 1 38 ASP 38 220 220 ASP ASP A . n A 1 39 ARG 39 221 221 ARG ARG A . n A 1 40 ARG 40 222 222 ARG ARG A . n A 1 41 ARG 41 223 223 ARG ARG A . n A 1 42 VAL 42 224 224 VAL VAL A . n A 1 43 GLU 43 225 225 GLU GLU A . n A 1 44 TYR 44 226 226 TYR TYR A . n A 1 45 ASP 45 227 227 ASP ASP A . n A 1 46 ILE 46 228 228 ILE ILE A . n A 1 47 PHE 47 229 229 PHE PHE A . n A 1 48 LEU 48 230 230 LEU LEU A . n A 1 49 LEU 49 231 231 LEU LEU A . n A 1 50 VAL 50 232 232 VAL VAL A . n A 1 51 GLU 51 233 233 GLU GLU A . n A 1 52 GLU 52 234 234 GLU GLU A . n A 1 53 LEU 53 235 235 LEU LEU A . n A 1 54 HIS 54 236 236 HIS HIS A . n A 1 55 VAL 55 237 237 VAL VAL A . n A 1 56 LEU 56 238 238 LEU LEU A . n A 1 57 ASP 57 239 239 ASP ASP A . n A 1 58 ILE 58 240 240 ILE ILE A . n A 1 59 ILE 59 241 241 ILE ILE A . n A 1 60 ARG 60 242 242 ARG ARG A . n A 1 61 LYS 61 243 243 LYS LYS A . n A 1 62 GLY 62 244 244 GLY GLY A . n A 1 63 PHE 63 245 245 PHE PHE A . n A 1 64 GLY 64 246 246 GLY GLY A . n A 1 65 SER 65 247 247 SER SER A . n A 1 66 VAL 66 248 248 VAL VAL A . n A 1 67 ASP 67 249 249 ASP ASP A . n A 1 68 GLU 68 250 250 GLU GLU A . n A 1 69 PHE 69 251 251 PHE PHE A . n A 1 70 ILE 70 252 252 ILE ILE A . n A 1 71 ALA 71 253 253 ALA ALA A . n A 1 72 LEU 72 254 254 LEU LEU A . n A 1 73 ALA 73 255 255 ALA ALA A . n A 1 74 ASN 74 256 256 ASN ASN A . n A 1 75 SER 75 257 257 SER SER A . n A 1 76 VAL 76 258 258 VAL VAL A . n A 1 77 SER 77 259 259 SER SER A . n A 1 78 ASN 78 260 260 ASN ASN A . n A 1 79 ARG 79 261 261 ARG ARG A . n A 1 80 ARG 80 262 262 ARG ARG A . n A 1 81 LYS 81 263 263 LYS LYS A . n A 1 82 SER 82 264 264 SER SER A . n A 1 83 ARG 83 265 265 ARG ARG A . n A 1 84 ALA 84 266 266 ALA ALA A . n A 1 85 GLY 85 267 267 GLY GLY A . n A 1 86 LYS 86 268 268 LYS LYS A . n A 1 87 SER 87 269 269 SER SER A . n A 1 88 LEU 88 270 270 LEU LEU A . n A 1 89 GLU 89 271 271 GLU GLU A . n A 1 90 LEU 90 272 272 LEU LEU A . n A 1 91 HIS 91 273 273 HIS HIS A . n A 1 92 LEU 92 274 274 LEU LEU A . n A 1 93 GLU 93 275 275 GLU GLU A . n A 1 94 HIS 94 276 276 HIS HIS A . n A 1 95 LEU 95 277 277 LEU LEU A . n A 1 96 PHE 96 278 278 PHE PHE A . n A 1 97 ILE 97 279 279 ILE ILE A . n A 1 98 GLU 98 280 280 GLU GLU A . n A 1 99 HIS 99 281 281 HIS HIS A . n A 1 100 GLY 100 282 282 GLY GLY A . n A 1 101 LEU 101 283 283 LEU LEU A . n A 1 102 ARG 102 284 284 ARG ARG A . n A 1 103 HIS 103 285 285 HIS HIS A . n A 1 104 PHE 104 286 286 PHE PHE A . n A 1 105 ALA 105 287 287 ALA ALA A . n A 1 106 THR 106 288 288 THR THR A . n A 1 107 GLN 107 289 289 GLN GLN A . n A 1 108 ALA 108 290 290 ALA ALA A . n A 1 109 ILE 109 291 291 ILE ILE A . n A 1 110 THR 110 292 292 THR THR A . n A 1 111 GLU 111 293 293 GLU GLU A . n A 1 112 GLY 112 294 294 GLY GLY A . n A 1 113 ASN 113 295 295 ASN ASN A . n A 1 114 LYS 114 296 296 LYS LYS A . n A 1 115 LYS 115 297 297 LYS LYS A . n A 1 116 PRO 116 298 298 PRO PRO A . n A 1 117 ASP 117 299 299 ASP ASP A . n A 1 118 PHE 118 300 300 PHE PHE A . n A 1 119 LEU 119 301 301 LEU LEU A . n A 1 120 PHE 120 302 302 PHE PHE A . n A 1 121 PRO 121 303 303 PRO PRO A . n A 1 122 SER 122 304 304 SER SER A . n A 1 123 ALA 123 305 305 ALA ALA A . n A 1 124 GLY 124 306 306 GLY GLY A . n A 1 125 ALA 125 307 307 ALA ALA A . n A 1 126 TYR 126 308 308 TYR TYR A . n A 1 127 HIS 127 309 309 HIS HIS A . n A 1 128 ASP 128 310 310 ASP ASP A . n A 1 129 THR 129 311 311 THR THR A . n A 1 130 GLU 130 312 312 GLU GLU A . n A 1 131 PHE 131 313 313 PHE PHE A . n A 1 132 PRO 132 314 314 PRO PRO A . n A 1 133 VAL 133 315 315 VAL VAL A . n A 1 134 GLU 134 316 316 GLU GLU A . n A 1 135 ASN 135 317 317 ASN ASN A . n A 1 136 LEU 136 318 318 LEU LEU A . n A 1 137 ARG 137 319 319 ARG ARG A . n A 1 138 MET 138 320 320 MET MET A . n A 1 139 LEU 139 321 321 LEU LEU A . n A 1 140 ALA 140 322 322 ALA ALA A . n A 1 141 VAL 141 323 323 VAL VAL A . n A 1 142 LYS 142 324 324 LYS LYS A . n A 1 143 THR 143 325 325 THR THR A . n A 1 144 THR 144 326 326 THR THR A . n A 1 145 CYS 145 327 327 CYS CYS A . n A 1 146 LYS 146 328 328 LYS LYS A . n A 1 147 ASP 147 329 329 ASP ASP A . n A 1 148 ARG 148 330 330 ARG ARG A . n A 1 149 TRP 149 331 331 TRP TRP A . n A 1 150 ARG 150 332 332 ARG ARG A . n A 1 151 GLN 151 333 333 GLN GLN A . n A 1 152 ILE 152 334 334 ILE ILE A . n A 1 153 LEU 153 335 335 LEU LEU A . n A 1 154 ASN 154 336 336 ASN ASN A . n A 1 155 GLU 155 337 337 GLU GLU A . n A 1 156 ALA 156 338 338 ALA ALA A . n A 1 157 ASP 157 339 339 ASP ASP A . n A 1 158 LYS 158 340 340 LYS LYS A . n A 1 159 ILE 159 341 341 ILE ILE A . n A 1 160 HIS 160 342 342 HIS HIS A . n A 1 161 GLN 161 343 343 GLN GLN A . n A 1 162 VAL 162 344 344 VAL VAL A . n A 1 163 HIS 163 345 345 HIS HIS A . n A 1 164 LEU 164 346 346 LEU LEU A . n A 1 165 PHE 165 347 347 PHE PHE A . n A 1 166 THR 166 348 348 THR THR A . n A 1 167 LEU 167 349 349 LEU LEU A . n A 1 168 GLN 168 350 350 GLN GLN A . n A 1 169 GLU 169 351 351 GLU GLU A . n A 1 170 GLY 170 352 352 GLY GLY A . n A 1 171 VAL 171 353 353 VAL VAL A . n A 1 172 SER 172 354 354 SER SER A . n A 1 173 LEU 173 355 355 LEU LEU A . n A 1 174 ALA 174 356 356 ALA ALA A . n A 1 175 GLN 175 357 357 GLN GLN A . n A 1 176 TYR 176 358 358 TYR TYR A . n A 1 177 ARG 177 359 359 ARG ARG A . n A 1 178 GLU 178 360 360 GLU GLU A . n A 1 179 MET 179 361 361 MET MET A . n A 1 180 ARG 180 362 362 ARG ARG A . n A 1 181 GLU 181 363 363 GLU GLU A . n A 1 182 SER 182 364 364 SER SER A . n A 1 183 GLY 183 365 365 GLY GLY A . n A 1 184 VAL 184 366 366 VAL VAL A . n A 1 185 ARG 185 367 367 ARG ARG A . n A 1 186 LEU 186 368 368 LEU LEU A . n A 1 187 VAL 187 369 369 VAL VAL A . n A 1 188 VAL 188 370 370 VAL VAL A . n A 1 189 PRO 189 371 371 PRO PRO A . n A 1 190 SER 190 372 372 SER SER A . n A 1 191 SER 191 373 373 SER SER A . n A 1 192 LEU 192 374 374 LEU LEU A . n A 1 193 HIS 193 375 375 HIS HIS A . n A 1 194 LYS 194 376 376 LYS LYS A . n A 1 195 LYS 195 377 377 LYS LYS A . n A 1 196 TYR 196 378 378 TYR TYR A . n A 1 197 PRO 197 379 379 PRO PRO A . n A 1 198 GLU 198 380 380 GLU GLU A . n A 1 199 ALA 199 381 381 ALA ALA A . n A 1 200 VAL 200 382 382 VAL VAL A . n A 1 201 ARG 201 383 383 ARG ARG A . n A 1 202 ALA 202 384 384 ALA ALA A . n A 1 203 GLU 203 385 385 GLU GLU A . n A 1 204 LEU 204 386 386 LEU LEU A . n A 1 205 MET 205 387 387 MET MET A . n A 1 206 THR 206 388 388 THR THR A . n A 1 207 LEU 207 389 389 LEU LEU A . n A 1 208 GLY 208 390 390 GLY GLY A . n A 1 209 ALA 209 391 391 ALA ALA A . n A 1 210 PHE 210 392 392 PHE PHE A . n A 1 211 ILE 211 393 393 ILE ILE A . n A 1 212 ALA 212 394 394 ALA ALA A . n A 1 213 GLU 213 395 395 GLU GLU A . n A 1 214 LEU 214 396 396 LEU LEU A . n A 1 215 THR 215 397 397 THR THR A . n A 1 216 GLY 216 398 398 GLY GLY A . n A 1 217 LEU 217 399 399 LEU LEU A . n A 1 218 TYR 218 400 400 TYR TYR A . n A 1 219 ALA 219 401 401 ALA ALA A . n A 1 220 ASP 220 402 402 ASP ASP A . n A 1 221 ILE 221 403 403 ILE ILE A . n A 1 222 PRO 222 404 404 PRO PRO A . n B 2 1 DT 1 -6 -6 DT DT B . n B 2 2 DC 2 -5 -5 DC DC B . n B 2 3 DG 3 -4 -4 DG DG B . n B 2 4 DA 4 -3 -3 DA DA B . n B 2 5 DC 5 -2 -2 DC DC B . n B 2 6 DC 6 -1 -1 DC DC B . n B 2 7 DA 7 0 0 DA DA B . n B 2 8 DG 8 1 1 DG DG B . n B 2 9 DG 9 2 2 DG DG B . n B 2 10 DC 10 3 3 DC DC B . n B 2 11 DT 11 4 4 DT DT B . n B 2 12 DA 12 5 5 DA DA B . n C 3 1 DT 1 -5 -5 DT DT C . n C 3 2 DA 2 -4 -4 DA DA C . n C 3 3 DG 3 -3 -3 DG DG C . n C 3 4 DC 4 -2 -2 DC DC C . n C 3 5 DC 5 -1 -1 DC DC C . n C 3 6 DT 6 0 0 DT DT C . n C 3 7 DG 7 1 1 DG DG C . n C 3 8 DG 8 2 2 DG DG C . n C 3 9 DT 9 3 3 DT DT C . n C 3 10 DC 10 4 4 DC DC C . n C 3 11 DG 11 5 5 DG DG C . n C 3 12 DA 12 6 6 DA DA C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 1 1 GOL GOL A . E 5 HOH 1 2 2 HOH HOH A . E 5 HOH 2 3 3 HOH HOH A . E 5 HOH 3 4 4 HOH HOH A . E 5 HOH 4 5 5 HOH HOH A . E 5 HOH 5 6 6 HOH HOH A . E 5 HOH 6 7 7 HOH HOH A . E 5 HOH 7 8 8 HOH HOH A . E 5 HOH 8 10 10 HOH HOH A . E 5 HOH 9 11 11 HOH HOH A . E 5 HOH 10 12 12 HOH HOH A . E 5 HOH 11 13 13 HOH HOH A . E 5 HOH 12 15 15 HOH HOH A . E 5 HOH 13 16 16 HOH HOH A . E 5 HOH 14 17 17 HOH HOH A . E 5 HOH 15 18 18 HOH HOH A . E 5 HOH 16 19 19 HOH HOH A . E 5 HOH 17 20 20 HOH HOH A . E 5 HOH 18 23 23 HOH HOH A . E 5 HOH 19 24 24 HOH HOH A . E 5 HOH 20 25 25 HOH HOH A . E 5 HOH 21 27 27 HOH HOH A . E 5 HOH 22 28 28 HOH HOH A . E 5 HOH 23 29 29 HOH HOH A . E 5 HOH 24 30 30 HOH HOH A . E 5 HOH 25 31 31 HOH HOH A . E 5 HOH 26 32 32 HOH HOH A . E 5 HOH 27 33 33 HOH HOH A . E 5 HOH 28 34 34 HOH HOH A . E 5 HOH 29 35 35 HOH HOH A . E 5 HOH 30 36 36 HOH HOH A . E 5 HOH 31 37 37 HOH HOH A . E 5 HOH 32 38 38 HOH HOH A . E 5 HOH 33 41 41 HOH HOH A . E 5 HOH 34 42 42 HOH HOH A . E 5 HOH 35 43 43 HOH HOH A . E 5 HOH 36 44 44 HOH HOH A . E 5 HOH 37 46 46 HOH HOH A . E 5 HOH 38 47 47 HOH HOH A . E 5 HOH 39 48 48 HOH HOH A . E 5 HOH 40 49 49 HOH HOH A . E 5 HOH 41 50 50 HOH HOH A . E 5 HOH 42 51 51 HOH HOH A . E 5 HOH 43 53 53 HOH HOH A . E 5 HOH 44 54 54 HOH HOH A . E 5 HOH 45 55 55 HOH HOH A . E 5 HOH 46 56 56 HOH HOH A . E 5 HOH 47 57 57 HOH HOH A . E 5 HOH 48 58 58 HOH HOH A . E 5 HOH 49 60 60 HOH HOH A . E 5 HOH 50 61 61 HOH HOH A . E 5 HOH 51 64 64 HOH HOH A . E 5 HOH 52 65 65 HOH HOH A . E 5 HOH 53 66 66 HOH HOH A . E 5 HOH 54 67 67 HOH HOH A . E 5 HOH 55 68 68 HOH HOH A . E 5 HOH 56 69 69 HOH HOH A . E 5 HOH 57 405 405 HOH HOH A . F 5 HOH 1 9 9 HOH HOH B . F 5 HOH 2 22 22 HOH HOH B . F 5 HOH 3 26 26 HOH HOH B . F 5 HOH 4 45 45 HOH HOH B . F 5 HOH 5 52 52 HOH HOH B . G 5 HOH 1 39 39 HOH HOH C . G 5 HOH 2 40 40 HOH HOH C . G 5 HOH 3 59 59 HOH HOH C . G 5 HOH 4 62 62 HOH HOH C . G 5 HOH 5 63 63 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 77.0540000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' diffrn_source 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 24.3881 -6.3289 -14.6345 0.1286 0.0313 0.0955 0.0053 -0.0632 -0.0018 1.2894 1.0715 1.1991 0.3072 -0.4923 -0.3110 0.0067 0.0322 -0.0389 0.1765 -0.0216 0.1258 0.0238 -0.0233 -0.0557 'X-RAY DIFFRACTION' 2 ? refined 37.5514 0.0438 -19.7907 0.1840 0.1249 0.1407 0.0374 0.0253 0.0138 0.9905 3.2383 0.7942 1.7869 0.8505 1.5444 -0.0986 0.0775 0.0212 0.0604 0.1275 0.2269 -0.2143 -0.1394 0.0519 'X-RAY DIFFRACTION' 3 ? refined 39.4921 -2.1521 -19.5849 0.1929 0.0725 0.0526 0.0510 -0.0358 -0.0102 8.1482 4.1253 1.8514 0.9261 -3.6897 0.4317 -0.2870 0.1650 0.1220 0.3950 -0.1931 0.2820 0.2351 0.1803 -0.1433 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 183 A 404 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 1 A 1 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 A 2 A 405 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 B -6 B 5 ? . . . . ? 'X-RAY DIFFRACTION' 5 2 B 9 B 52 ? . . . . ? 'X-RAY DIFFRACTION' 6 3 C -5 C 6 ? . . . . ? 'X-RAY DIFFRACTION' 7 3 C 39 C 63 ? . . . . ? # _pdbx_phasing_MR.entry_id 3HQG _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.465 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.409 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic 0.411 _pdbx_phasing_MR.d_res_high_rotation 4.000 _pdbx_phasing_MR.d_res_low_rotation 12.000 _pdbx_phasing_MR.d_res_high_translation 4.000 _pdbx_phasing_MR.d_res_low_translation 12.000 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 AMoRE . ? program 'Jorge Navaza' ccp4@ccp4.ac.uk phasing http://www.ccp4.ac.uk/ Fortran_77 ? 2 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 3 SCALA 3.2.19 22/12/2005 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC -1 ? A "C1'" B DC -1 ? A N1 B DC -1 ? A 111.03 108.30 2.73 0.30 N 2 1 "O4'" B DG 1 ? A "C1'" B DG 1 ? A N9 B DG 1 ? A 111.13 108.30 2.83 0.30 N 3 1 C2 B DC 3 ? A N3 B DC 3 ? A C4 B DC 3 ? A 122.91 119.90 3.01 0.50 N 4 1 "O4'" C DC -1 ? B "C1'" C DC -1 ? B N1 C DC -1 ? B 111.01 108.30 2.71 0.30 N 5 1 "O4'" C DG 1 ? B "C1'" C DG 1 ? B N9 C DG 1 ? B 111.10 108.30 2.80 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 184 ? ? 51.13 103.80 2 1 LEU A 191 ? ? -87.52 -75.21 3 1 LYS A 209 ? ? 73.68 127.50 4 1 LEU A 212 ? ? -56.65 -4.05 5 1 THR A 292 ? ? -97.88 -84.26 6 1 ASN A 295 ? ? -104.93 -93.27 7 1 LYS A 328 ? ? 49.56 -130.68 8 1 LEU A 335 ? ? -47.26 -103.65 9 1 ASN A 336 ? ? -67.05 44.92 10 1 ARG A 383 ? ? -39.05 -34.98 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 GOL C1 C N N 280 GOL O1 O N N 281 GOL C2 C N N 282 GOL O2 O N N 283 GOL C3 C N N 284 GOL O3 O N N 285 GOL H11 H N N 286 GOL H12 H N N 287 GOL HO1 H N N 288 GOL H2 H N N 289 GOL HO2 H N N 290 GOL H31 H N N 291 GOL H32 H N N 292 GOL HO3 H N N 293 HIS N N N N 294 HIS CA C N S 295 HIS C C N N 296 HIS O O N N 297 HIS CB C N N 298 HIS CG C Y N 299 HIS ND1 N Y N 300 HIS CD2 C Y N 301 HIS CE1 C Y N 302 HIS NE2 N Y N 303 HIS OXT O N N 304 HIS H H N N 305 HIS H2 H N N 306 HIS HA H N N 307 HIS HB2 H N N 308 HIS HB3 H N N 309 HIS HD1 H N N 310 HIS HD2 H N N 311 HIS HE1 H N N 312 HIS HE2 H N N 313 HIS HXT H N N 314 HOH O O N N 315 HOH H1 H N N 316 HOH H2 H N N 317 ILE N N N N 318 ILE CA C N S 319 ILE C C N N 320 ILE O O N N 321 ILE CB C N S 322 ILE CG1 C N N 323 ILE CG2 C N N 324 ILE CD1 C N N 325 ILE OXT O N N 326 ILE H H N N 327 ILE H2 H N N 328 ILE HA H N N 329 ILE HB H N N 330 ILE HG12 H N N 331 ILE HG13 H N N 332 ILE HG21 H N N 333 ILE HG22 H N N 334 ILE HG23 H N N 335 ILE HD11 H N N 336 ILE HD12 H N N 337 ILE HD13 H N N 338 ILE HXT H N N 339 LEU N N N N 340 LEU CA C N S 341 LEU C C N N 342 LEU O O N N 343 LEU CB C N N 344 LEU CG C N N 345 LEU CD1 C N N 346 LEU CD2 C N N 347 LEU OXT O N N 348 LEU H H N N 349 LEU H2 H N N 350 LEU HA H N N 351 LEU HB2 H N N 352 LEU HB3 H N N 353 LEU HG H N N 354 LEU HD11 H N N 355 LEU HD12 H N N 356 LEU HD13 H N N 357 LEU HD21 H N N 358 LEU HD22 H N N 359 LEU HD23 H N N 360 LEU HXT H N N 361 LYS N N N N 362 LYS CA C N S 363 LYS C C N N 364 LYS O O N N 365 LYS CB C N N 366 LYS CG C N N 367 LYS CD C N N 368 LYS CE C N N 369 LYS NZ N N N 370 LYS OXT O N N 371 LYS H H N N 372 LYS H2 H N N 373 LYS HA H N N 374 LYS HB2 H N N 375 LYS HB3 H N N 376 LYS HG2 H N N 377 LYS HG3 H N N 378 LYS HD2 H N N 379 LYS HD3 H N N 380 LYS HE2 H N N 381 LYS HE3 H N N 382 LYS HZ1 H N N 383 LYS HZ2 H N N 384 LYS HZ3 H N N 385 LYS HXT H N N 386 MET N N N N 387 MET CA C N S 388 MET C C N N 389 MET O O N N 390 MET CB C N N 391 MET CG C N N 392 MET SD S N N 393 MET CE C N N 394 MET OXT O N N 395 MET H H N N 396 MET H2 H N N 397 MET HA H N N 398 MET HB2 H N N 399 MET HB3 H N N 400 MET HG2 H N N 401 MET HG3 H N N 402 MET HE1 H N N 403 MET HE2 H N N 404 MET HE3 H N N 405 MET HXT H N N 406 PHE N N N N 407 PHE CA C N S 408 PHE C C N N 409 PHE O O N N 410 PHE CB C N N 411 PHE CG C Y N 412 PHE CD1 C Y N 413 PHE CD2 C Y N 414 PHE CE1 C Y N 415 PHE CE2 C Y N 416 PHE CZ C Y N 417 PHE OXT O N N 418 PHE H H N N 419 PHE H2 H N N 420 PHE HA H N N 421 PHE HB2 H N N 422 PHE HB3 H N N 423 PHE HD1 H N N 424 PHE HD2 H N N 425 PHE HE1 H N N 426 PHE HE2 H N N 427 PHE HZ H N N 428 PHE HXT H N N 429 PRO N N N N 430 PRO CA C N S 431 PRO C C N N 432 PRO O O N N 433 PRO CB C N N 434 PRO CG C N N 435 PRO CD C N N 436 PRO OXT O N N 437 PRO H H N N 438 PRO HA H N N 439 PRO HB2 H N N 440 PRO HB3 H N N 441 PRO HG2 H N N 442 PRO HG3 H N N 443 PRO HD2 H N N 444 PRO HD3 H N N 445 PRO HXT H N N 446 SER N N N N 447 SER CA C N S 448 SER C C N N 449 SER O O N N 450 SER CB C N N 451 SER OG O N N 452 SER OXT O N N 453 SER H H N N 454 SER H2 H N N 455 SER HA H N N 456 SER HB2 H N N 457 SER HB3 H N N 458 SER HG H N N 459 SER HXT H N N 460 THR N N N N 461 THR CA C N S 462 THR C C N N 463 THR O O N N 464 THR CB C N R 465 THR OG1 O N N 466 THR CG2 C N N 467 THR OXT O N N 468 THR H H N N 469 THR H2 H N N 470 THR HA H N N 471 THR HB H N N 472 THR HG1 H N N 473 THR HG21 H N N 474 THR HG22 H N N 475 THR HG23 H N N 476 THR HXT H N N 477 TRP N N N N 478 TRP CA C N S 479 TRP C C N N 480 TRP O O N N 481 TRP CB C N N 482 TRP CG C Y N 483 TRP CD1 C Y N 484 TRP CD2 C Y N 485 TRP NE1 N Y N 486 TRP CE2 C Y N 487 TRP CE3 C Y N 488 TRP CZ2 C Y N 489 TRP CZ3 C Y N 490 TRP CH2 C Y N 491 TRP OXT O N N 492 TRP H H N N 493 TRP H2 H N N 494 TRP HA H N N 495 TRP HB2 H N N 496 TRP HB3 H N N 497 TRP HD1 H N N 498 TRP HE1 H N N 499 TRP HE3 H N N 500 TRP HZ2 H N N 501 TRP HZ3 H N N 502 TRP HH2 H N N 503 TRP HXT H N N 504 TYR N N N N 505 TYR CA C N S 506 TYR C C N N 507 TYR O O N N 508 TYR CB C N N 509 TYR CG C Y N 510 TYR CD1 C Y N 511 TYR CD2 C Y N 512 TYR CE1 C Y N 513 TYR CE2 C Y N 514 TYR CZ C Y N 515 TYR OH O N N 516 TYR OXT O N N 517 TYR H H N N 518 TYR H2 H N N 519 TYR HA H N N 520 TYR HB2 H N N 521 TYR HB3 H N N 522 TYR HD1 H N N 523 TYR HD2 H N N 524 TYR HE1 H N N 525 TYR HE2 H N N 526 TYR HH H N N 527 TYR HXT H N N 528 VAL N N N N 529 VAL CA C N S 530 VAL C C N N 531 VAL O O N N 532 VAL CB C N N 533 VAL CG1 C N N 534 VAL CG2 C N N 535 VAL OXT O N N 536 VAL H H N N 537 VAL H2 H N N 538 VAL HA H N N 539 VAL HB H N N 540 VAL HG11 H N N 541 VAL HG12 H N N 542 VAL HG13 H N N 543 VAL HG21 H N N 544 VAL HG22 H N N 545 VAL HG23 H N N 546 VAL HXT H N N 547 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 GOL C1 O1 sing N N 278 GOL C1 C2 sing N N 279 GOL C1 H11 sing N N 280 GOL C1 H12 sing N N 281 GOL O1 HO1 sing N N 282 GOL C2 O2 sing N N 283 GOL C2 C3 sing N N 284 GOL C2 H2 sing N N 285 GOL O2 HO2 sing N N 286 GOL C3 O3 sing N N 287 GOL C3 H31 sing N N 288 GOL C3 H32 sing N N 289 GOL O3 HO3 sing N N 290 HIS N CA sing N N 291 HIS N H sing N N 292 HIS N H2 sing N N 293 HIS CA C sing N N 294 HIS CA CB sing N N 295 HIS CA HA sing N N 296 HIS C O doub N N 297 HIS C OXT sing N N 298 HIS CB CG sing N N 299 HIS CB HB2 sing N N 300 HIS CB HB3 sing N N 301 HIS CG ND1 sing Y N 302 HIS CG CD2 doub Y N 303 HIS ND1 CE1 doub Y N 304 HIS ND1 HD1 sing N N 305 HIS CD2 NE2 sing Y N 306 HIS CD2 HD2 sing N N 307 HIS CE1 NE2 sing Y N 308 HIS CE1 HE1 sing N N 309 HIS NE2 HE2 sing N N 310 HIS OXT HXT sing N N 311 HOH O H1 sing N N 312 HOH O H2 sing N N 313 ILE N CA sing N N 314 ILE N H sing N N 315 ILE N H2 sing N N 316 ILE CA C sing N N 317 ILE CA CB sing N N 318 ILE CA HA sing N N 319 ILE C O doub N N 320 ILE C OXT sing N N 321 ILE CB CG1 sing N N 322 ILE CB CG2 sing N N 323 ILE CB HB sing N N 324 ILE CG1 CD1 sing N N 325 ILE CG1 HG12 sing N N 326 ILE CG1 HG13 sing N N 327 ILE CG2 HG21 sing N N 328 ILE CG2 HG22 sing N N 329 ILE CG2 HG23 sing N N 330 ILE CD1 HD11 sing N N 331 ILE CD1 HD12 sing N N 332 ILE CD1 HD13 sing N N 333 ILE OXT HXT sing N N 334 LEU N CA sing N N 335 LEU N H sing N N 336 LEU N H2 sing N N 337 LEU CA C sing N N 338 LEU CA CB sing N N 339 LEU CA HA sing N N 340 LEU C O doub N N 341 LEU C OXT sing N N 342 LEU CB CG sing N N 343 LEU CB HB2 sing N N 344 LEU CB HB3 sing N N 345 LEU CG CD1 sing N N 346 LEU CG CD2 sing N N 347 LEU CG HG sing N N 348 LEU CD1 HD11 sing N N 349 LEU CD1 HD12 sing N N 350 LEU CD1 HD13 sing N N 351 LEU CD2 HD21 sing N N 352 LEU CD2 HD22 sing N N 353 LEU CD2 HD23 sing N N 354 LEU OXT HXT sing N N 355 LYS N CA sing N N 356 LYS N H sing N N 357 LYS N H2 sing N N 358 LYS CA C sing N N 359 LYS CA CB sing N N 360 LYS CA HA sing N N 361 LYS C O doub N N 362 LYS C OXT sing N N 363 LYS CB CG sing N N 364 LYS CB HB2 sing N N 365 LYS CB HB3 sing N N 366 LYS CG CD sing N N 367 LYS CG HG2 sing N N 368 LYS CG HG3 sing N N 369 LYS CD CE sing N N 370 LYS CD HD2 sing N N 371 LYS CD HD3 sing N N 372 LYS CE NZ sing N N 373 LYS CE HE2 sing N N 374 LYS CE HE3 sing N N 375 LYS NZ HZ1 sing N N 376 LYS NZ HZ2 sing N N 377 LYS NZ HZ3 sing N N 378 LYS OXT HXT sing N N 379 MET N CA sing N N 380 MET N H sing N N 381 MET N H2 sing N N 382 MET CA C sing N N 383 MET CA CB sing N N 384 MET CA HA sing N N 385 MET C O doub N N 386 MET C OXT sing N N 387 MET CB CG sing N N 388 MET CB HB2 sing N N 389 MET CB HB3 sing N N 390 MET CG SD sing N N 391 MET CG HG2 sing N N 392 MET CG HG3 sing N N 393 MET SD CE sing N N 394 MET CE HE1 sing N N 395 MET CE HE2 sing N N 396 MET CE HE3 sing N N 397 MET OXT HXT sing N N 398 PHE N CA sing N N 399 PHE N H sing N N 400 PHE N H2 sing N N 401 PHE CA C sing N N 402 PHE CA CB sing N N 403 PHE CA HA sing N N 404 PHE C O doub N N 405 PHE C OXT sing N N 406 PHE CB CG sing N N 407 PHE CB HB2 sing N N 408 PHE CB HB3 sing N N 409 PHE CG CD1 doub Y N 410 PHE CG CD2 sing Y N 411 PHE CD1 CE1 sing Y N 412 PHE CD1 HD1 sing N N 413 PHE CD2 CE2 doub Y N 414 PHE CD2 HD2 sing N N 415 PHE CE1 CZ doub Y N 416 PHE CE1 HE1 sing N N 417 PHE CE2 CZ sing Y N 418 PHE CE2 HE2 sing N N 419 PHE CZ HZ sing N N 420 PHE OXT HXT sing N N 421 PRO N CA sing N N 422 PRO N CD sing N N 423 PRO N H sing N N 424 PRO CA C sing N N 425 PRO CA CB sing N N 426 PRO CA HA sing N N 427 PRO C O doub N N 428 PRO C OXT sing N N 429 PRO CB CG sing N N 430 PRO CB HB2 sing N N 431 PRO CB HB3 sing N N 432 PRO CG CD sing N N 433 PRO CG HG2 sing N N 434 PRO CG HG3 sing N N 435 PRO CD HD2 sing N N 436 PRO CD HD3 sing N N 437 PRO OXT HXT sing N N 438 SER N CA sing N N 439 SER N H sing N N 440 SER N H2 sing N N 441 SER CA C sing N N 442 SER CA CB sing N N 443 SER CA HA sing N N 444 SER C O doub N N 445 SER C OXT sing N N 446 SER CB OG sing N N 447 SER CB HB2 sing N N 448 SER CB HB3 sing N N 449 SER OG HG sing N N 450 SER OXT HXT sing N N 451 THR N CA sing N N 452 THR N H sing N N 453 THR N H2 sing N N 454 THR CA C sing N N 455 THR CA CB sing N N 456 THR CA HA sing N N 457 THR C O doub N N 458 THR C OXT sing N N 459 THR CB OG1 sing N N 460 THR CB CG2 sing N N 461 THR CB HB sing N N 462 THR OG1 HG1 sing N N 463 THR CG2 HG21 sing N N 464 THR CG2 HG22 sing N N 465 THR CG2 HG23 sing N N 466 THR OXT HXT sing N N 467 TRP N CA sing N N 468 TRP N H sing N N 469 TRP N H2 sing N N 470 TRP CA C sing N N 471 TRP CA CB sing N N 472 TRP CA HA sing N N 473 TRP C O doub N N 474 TRP C OXT sing N N 475 TRP CB CG sing N N 476 TRP CB HB2 sing N N 477 TRP CB HB3 sing N N 478 TRP CG CD1 doub Y N 479 TRP CG CD2 sing Y N 480 TRP CD1 NE1 sing Y N 481 TRP CD1 HD1 sing N N 482 TRP CD2 CE2 doub Y N 483 TRP CD2 CE3 sing Y N 484 TRP NE1 CE2 sing Y N 485 TRP NE1 HE1 sing N N 486 TRP CE2 CZ2 sing Y N 487 TRP CE3 CZ3 doub Y N 488 TRP CE3 HE3 sing N N 489 TRP CZ2 CH2 doub Y N 490 TRP CZ2 HZ2 sing N N 491 TRP CZ3 CH2 sing Y N 492 TRP CZ3 HZ3 sing N N 493 TRP CH2 HH2 sing N N 494 TRP OXT HXT sing N N 495 TYR N CA sing N N 496 TYR N H sing N N 497 TYR N H2 sing N N 498 TYR CA C sing N N 499 TYR CA CB sing N N 500 TYR CA HA sing N N 501 TYR C O doub N N 502 TYR C OXT sing N N 503 TYR CB CG sing N N 504 TYR CB HB2 sing N N 505 TYR CB HB3 sing N N 506 TYR CG CD1 doub Y N 507 TYR CG CD2 sing Y N 508 TYR CD1 CE1 sing Y N 509 TYR CD1 HD1 sing N N 510 TYR CD2 CE2 doub Y N 511 TYR CD2 HD2 sing N N 512 TYR CE1 CZ doub Y N 513 TYR CE1 HE1 sing N N 514 TYR CE2 CZ sing Y N 515 TYR CE2 HE2 sing N N 516 TYR CZ OH sing N N 517 TYR OH HH sing N N 518 TYR OXT HXT sing N N 519 VAL N CA sing N N 520 VAL N H sing N N 521 VAL N H2 sing N N 522 VAL CA C sing N N 523 VAL CA CB sing N N 524 VAL CA HA sing N N 525 VAL C O doub N N 526 VAL C OXT sing N N 527 VAL CB CG1 sing N N 528 VAL CB CG2 sing N N 529 VAL CB HB sing N N 530 VAL CG1 HG11 sing N N 531 VAL CG1 HG12 sing N N 532 VAL CG1 HG13 sing N N 533 VAL CG2 HG21 sing N N 534 VAL CG2 HG22 sing N N 535 VAL CG2 HG23 sing N N 536 VAL OXT HXT sing N N 537 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3HQG 'double helix' 3HQG 'b-form double helix' 3HQG 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 1 1_555 C DG 11 2_655 0.125 -0.076 0.045 -2.402 -1.536 -1.465 1 C_DT-5:DG5_C C -5 ? C 5 ? ? ? 1 C DA 2 1_555 C DC 10 2_655 0.137 -0.269 0.047 -2.731 -24.063 -4.108 2 C_DA-4:DC4_C C -4 ? C 4 ? ? ? 1 C DG 3 1_555 C DT 9 2_655 0.442 -0.215 0.776 3.439 -8.655 -6.032 3 C_DG-3:DT3_C C -3 ? C 3 ? ? 1 1 C DC 4 1_555 C DG 8 2_655 0.186 0.025 0.374 -10.271 -13.247 -1.642 4 C_DC-2:DG2_C C -2 ? C 2 ? 19 1 1 C DC 5 1_555 C DG 7 2_655 0.222 -0.224 -0.010 -9.638 40.591 0.568 5 C_DC-1:DG1_C C -1 ? C 1 ? 19 1 1 C DG 7 1_555 C DC 5 2_655 -0.222 -0.224 -0.010 9.638 40.591 0.568 6 C_DG1:DC-1_C C 1 ? C -1 ? 19 1 1 C DG 8 1_555 C DC 4 2_655 -0.186 0.025 0.374 10.271 -13.247 -1.642 7 C_DG2:DC-2_C C 2 ? C -2 ? 19 1 1 C DT 9 1_555 C DG 3 2_655 -0.442 -0.215 0.776 -3.439 -8.655 -6.032 8 C_DT3:DG-3_C C 3 ? C -3 ? ? 1 1 C DC 10 1_555 C DA 2 2_655 -0.137 -0.269 0.047 2.731 -24.063 -4.108 9 C_DC4:DA-4_C C 4 ? C -4 ? ? ? 1 C DG 11 1_555 C DT 1 2_655 -0.125 -0.076 0.045 2.402 -1.536 -1.465 10 C_DG5:DT-5_C C 5 ? C -5 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 1 1_555 C DG 11 2_655 C DA 2 1_555 C DC 10 2_655 -1.159 1.242 3.351 -2.528 2.020 39.455 1.587 1.402 3.473 2.986 3.737 39.582 1 CC_DT-5DA-4:DC4DG5_CC C -5 ? C 5 ? C -4 ? C 4 ? 1 C DA 2 1_555 C DC 10 2_655 C DG 3 1_555 C DT 9 2_655 0.198 -0.207 3.101 -7.196 -1.209 37.781 -0.172 -1.146 3.020 -1.846 10.987 38.454 2 CC_DA-4DG-3:DT3DC4_CC C -4 ? C 4 ? C -3 ? C 3 ? 1 C DG 3 1_555 C DT 9 2_655 C DC 4 1_555 C DG 8 2_655 0.639 -0.580 3.633 7.808 -3.989 35.462 -0.296 0.213 3.727 -6.428 -12.582 36.496 3 CC_DG-3DC-2:DG2DT3_CC C -3 ? C 3 ? C -2 ? C 2 ? 1 C DC 4 1_555 C DG 8 2_655 C DC 5 1_555 C DG 7 2_655 1.724 0.453 4.182 -3.131 14.684 27.813 -2.696 -3.925 3.737 28.105 5.993 31.536 4 CC_DC-2DC-1:DG1DG2_CC C -2 ? C 2 ? C -1 ? C 1 ? 1 C DC 5 1_555 C DG 7 2_655 C DG 7 1_555 C DC 5 2_655 0.000 1.666 4.912 0.000 0.291 38.177 2.491 0.000 4.924 0.444 0.000 38.178 5 CC_DC-1DG1:DC-1DG1_CC C -1 ? C 1 ? C 1 ? C -1 ? 1 C DG 7 1_555 C DC 5 2_655 C DG 8 1_555 C DC 4 2_655 -1.724 0.453 4.182 3.131 14.684 27.813 -2.696 3.925 3.737 28.105 -5.993 31.536 6 CC_DG1DG2:DC-2DC-1_CC C 1 ? C -1 ? C 2 ? C -2 ? 1 C DG 8 1_555 C DC 4 2_655 C DT 9 1_555 C DG 3 2_655 -0.639 -0.580 3.633 -7.808 -3.989 35.462 -0.296 -0.213 3.727 -6.428 12.582 36.496 7 CC_DG2DT3:DG-3DC-2_CC C 2 ? C -2 ? C 3 ? C -3 ? 1 C DT 9 1_555 C DG 3 2_655 C DC 10 1_555 C DA 2 2_655 -0.198 -0.207 3.101 7.196 -1.209 37.781 -0.172 1.146 3.020 -1.846 -10.987 38.454 8 CC_DT3DC4:DA-4DG-3_CC C 3 ? C -3 ? C 4 ? C -4 ? 1 C DC 10 1_555 C DA 2 2_655 C DG 11 1_555 C DT 1 2_655 1.159 1.242 3.351 2.528 2.020 39.455 1.587 -1.402 3.473 2.986 -3.737 39.582 9 CC_DC4DG5:DT-5DA-4_CC C 4 ? C -4 ? C 5 ? C -5 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NA6 _pdbx_initial_refinement_model.details 'PDB ENTRY 1NA6' #