data_3I1D # _entry.id 3I1D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3I1D pdb_00003i1d 10.2210/pdb3i1d/pdb NDB NA0057 ? ? RCSB RCSB053840 ? ? WWPDB D_1000053840 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.value' 15 4 'Structure model' '_struct_conn.pdbx_dist_value' 16 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3I1D _pdbx_database_status.recvd_initial_deposition_date 2009-06-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ET0 'Recognition of DNA three-way junctions by the M helical enantiomer of a metallo-supramolecular cylinder' unspecified PDB 3FX8 ;Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate') ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boer, D.R.' 1 'Uson, I.' 2 'Hannon, M.J.' 3 'Coll, M.' 4 # _citation.id primary _citation.title ;Self-Assembly of Functionalizable Two-Component 3D DNA Arrays through the Induced Formation of DNA Three-Way-Junction Branch Points by Supramolecular Cylinders. ; _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 49 _citation.page_first 2336 _citation.page_last 2339 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20191645 _citation.pdbx_database_id_DOI 10.1002/anie.200906742 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boer, D.R.' 1 ? primary 'Kerckhoffs, J.M.' 2 ? primary 'Parajo, Y.' 3 ? primary 'Pascu, M.' 4 ? primary 'Uson, I.' 5 ? primary 'Lincoln, P.' 6 ? primary 'Hannon, M.J.' 7 ? primary 'Coll, M.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 2 ? ? ? 'Palindromic hexanucleotide' 2 non-polymer syn 'FE (II) ION' 55.845 6 ? ? ? ? 3 non-polymer syn 'N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)-PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE' 376.453 9 ? ? ? ? 4 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (II) ION' FE2 3 'N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)-PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE' NPM 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized by Biomer (Ulm, Germany)' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FE2 non-polymer . 'FE (II) ION' ? 'Fe 2' 55.845 HOH non-polymer . WATER ? 'H2 O' 18.015 NPM non-polymer . 'N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)-PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE' '1,1-BIS(N-(4-PHENYL)-2-PYRIDYLCARBOXALDIMINE)METHANE' 'C25 H20 N4' 376.453 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DA 4 4 4 DA DA B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DG 6 6 6 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 1 101 101 FE2 FE2 A . D 2 FE2 1 102 102 FE2 FE2 A . E 2 FE2 1 7 7 FE2 FE2 A . F 3 NPM 1 203 203 NPM NPM A . G 3 NPM 1 204 204 NPM NPM A . H 3 NPM 1 205 205 NPM NPM A . I 2 FE2 1 102 102 FE2 FE2 B . J 2 FE2 1 101 101 FE2 FE2 B . K 2 FE2 1 7 7 FE2 FE2 B . L 3 NPM 1 9 9 NPM NPM B . M 3 NPM 1 10 10 NPM NPM B . N 3 NPM 1 8 8 NPM NPM B . O 3 NPM 1 203 203 NPM NPM B . P 3 NPM 1 204 204 NPM NPM B . Q 3 NPM 1 205 205 NPM NPM B . R 4 HOH 1 302 302 HOH HOH A . R 4 HOH 2 303 1 HOH HOH A . R 4 HOH 3 306 306 HOH HOH A . R 4 HOH 4 307 307 HOH HOH A . S 4 HOH 1 304 304 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MxCuBE 'data collection' . ? 1 SHELXCD phasing . ? 2 SHELXE 'model building' . ? 3 REFMAC refinement 5.5.0066 ? 4 XDS 'data reduction' . ? 5 XSCALE 'data scaling' . ? 6 # _cell.entry_id 3I1D _cell.length_a 74.970 _cell.length_b 74.970 _cell.length_c 74.970 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3I1D _symmetry.space_group_name_H-M 'P 43 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3I1D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.85 _exptl_crystal.density_percent_sol 74.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10 mM Magnesium acetate, 50 mM Sodium cacodylate, 1.3 M Lithium sulfate , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Magnesium acetate' ? ? ? 1 2 1 'Sodium cacodylate' ? ? ? 1 3 1 'Lithium sulfate' ? ? ? 1 4 2 'Magnesium acetate' ? ? ? 1 5 2 'Sodium cacodylate' ? ? ? 1 6 2 'Lithium sulfate' ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2005-03-05 ? 2 CCD 'ADSC QUANTUM 210r' 2003-05-05 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Single Silicon (111)' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Si(111) double-crystal' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9763 1.0 2 1.739 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE ID14-4' ESRF ID14-4 ? 0.9763 2 SYNCHROTRON 'ESRF BEAMLINE BM16' ESRF BM16 ? 1.739 # _reflns.entry_id 3I1D _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 18.182 _reflns.d_resolution_high 2.50 _reflns.number_obs 2766 _reflns.number_all 2766 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 33.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.9 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.60 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.798 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.08 _reflns_shell.pdbx_redundancy 13.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3I1D _refine.ls_number_reflns_obs 2629 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.18 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.24546 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24482 _refine.ls_R_factor_R_free 0.25918 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 127 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 55.027 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.584 _refine.pdbx_overall_ESU_R_Free 0.291 _refine.overall_SU_ML 0.311 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.398 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 267 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 512 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 18.18 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.021 ? 592 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.083 3.000 ? 779 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.110 0.200 ? 46 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 432 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.131 3.000 ? 592 'X-RAY DIFFRACTION' ? r_scangle_it 3.530 4.500 ? 779 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.564 _refine_ls_shell.number_reflns_R_work 170 _refine_ls_shell.R_factor_R_work 0.508 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.427 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3I1D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3I1D _struct.title ;Distinct recognition of three-way DNA junctions by the two enantiomers of a metallo-supramolecular cylinder ('helicate') ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I1D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Drug-DNA complex, 3-way junction, DNA structure recognition, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 4 ? S N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3I1D _struct_ref.pdbx_db_accession 3I1D _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CGTACG _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3I1D A 1 ? 6 ? 3I1D 1 ? 6 ? 1 6 2 1 3I1D B 1 ? 6 ? 3I1D 1 ? 6 ? 1 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 3 author_defined_assembly ? hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,C,D,E,F,G,H,R 2 1,4,5 B,I,J,K,L,M,N,O,P,Q,S 3 2,6,7 A,C,D,E,F,G,H,R 3 4 B,I,J,K,L,M,N,O,P,Q,S 3 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_564 -z+1/2,-x+1,y-1/2 0.0000000000 0.0000000000 -1.0000000000 37.4850000000 -1.0000000000 0.0000000000 0.0000000000 74.9700000000 0.0000000000 1.0000000000 0.0000000000 -37.4850000000 3 'crystal symmetry operation' 10_655 -y+1,z+1/2,-x+1/2 0.0000000000 -1.0000000000 0.0000000000 74.9700000000 0.0000000000 0.0000000000 1.0000000000 37.4850000000 -1.0000000000 0.0000000000 0.0000000000 37.4850000000 4 'crystal symmetry operation' 8_645 -z+1,x-1/2,-y+1/2 0.0000000000 0.0000000000 -1.0000000000 74.9700000000 1.0000000000 0.0000000000 0.0000000000 -37.4850000000 0.0000000000 -1.0000000000 0.0000000000 37.4850000000 5 'crystal symmetry operation' 11_556 y+1/2,-z+1/2,-x+1 0.0000000000 1.0000000000 0.0000000000 37.4850000000 0.0000000000 0.0000000000 -1.0000000000 37.4850000000 -1.0000000000 0.0000000000 0.0000000000 74.9700000000 6 'crystal symmetry operation' 18_654 -x+7/4,z+1/4,y-1/4 -1.0000000000 0.0000000000 0.0000000000 131.1975000000 0.0000000000 0.0000000000 1.0000000000 18.7425000000 0.0000000000 1.0000000000 0.0000000000 -18.7425000000 7 'crystal symmetry operation' 21_645 z+5/4,y-1/4,-x+3/4 0.0000000000 0.0000000000 1.0000000000 93.7125000000 0.0000000000 1.0000000000 0.0000000000 -18.7425000000 -1.0000000000 0.0000000000 0.0000000000 56.2275000000 # loop_ _struct_biol.id _struct_biol.details 1 ;1 - First cylinder-bound 3-way junction with continuous DNA strands around NPM ligands of chain I, symops on chain A: Rot = [-Z+1/2, -X, Y+1/2], Trans = [0 0 -1] Rot = [-Y, Z+1/2, -X+1/2], Trans = [1 0 -1] ; 2 ;2 - Second cylinder-bound 3-way junction with continuous DNA strands around NPM ligands of chain K, symops on chain B: Rot = [Y+1/2, -Z+1/2, -X], Trans = [0 0 0] Rot = [-Z, X+1/2, -Y+1/2], Trans = [1 0 0] ; 3 ;3 - Cylinder-bound 3-way junction with discontinuous DNA strands around NPM ligands of chain J, symops on : chain A Rot = [-Z+1/2, -X, Y+1/2], Trans = [0 0 -1] Rot = [Z+1/4, Y+3/4, -X+3/4], Trans = [1 -1 -1] Rot = [-X+3/4, Z+1/4, Y+3/4], Trans = [0 0 -1] chain B Rot = [-Z, X+1/2, -Y+1/2], Trans = [1 0 0] ; # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E FE2 . FE ? ? ? 1_555 O NPM . N14 ? ? A FE2 7 B NPM 203 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc2 metalc ? ? E FE2 . FE ? ? ? 1_555 O NPM . N13 ? ? A FE2 7 B NPM 203 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc3 metalc ? ? E FE2 . FE ? ? ? 1_555 P NPM . N13 ? ? A FE2 7 B NPM 204 1_555 ? ? ? ? ? ? ? 1.956 ? ? metalc4 metalc ? ? E FE2 . FE ? ? ? 1_555 P NPM . N14 ? ? A FE2 7 B NPM 204 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc5 metalc ? ? E FE2 . FE ? ? ? 1_555 Q NPM . N14 ? ? A FE2 7 B NPM 205 1_555 ? ? ? ? ? ? ? 1.959 ? ? metalc6 metalc ? ? E FE2 . FE ? ? ? 1_555 Q NPM . N13 ? ? A FE2 7 B NPM 205 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc7 metalc ? ? C FE2 . FE ? ? ? 1_555 F NPM . N14 ? ? A FE2 101 A NPM 203 1_555 ? ? ? ? ? ? ? 1.968 ? ? metalc8 metalc ? ? C FE2 . FE ? ? ? 1_555 F NPM . N13 ? ? A FE2 101 A NPM 203 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc9 metalc ? ? C FE2 . FE ? ? ? 1_555 G NPM . N13 ? ? A FE2 101 A NPM 204 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc10 metalc ? ? C FE2 . FE ? ? ? 1_555 G NPM . N14 ? ? A FE2 101 A NPM 204 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc11 metalc ? ? C FE2 . FE ? ? ? 1_555 H NPM . N13 ? ? A FE2 101 A NPM 205 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc12 metalc ? ? C FE2 . FE ? ? ? 1_555 H NPM . N14 ? ? A FE2 101 A NPM 205 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc13 metalc ? ? D FE2 . FE ? ? ? 1_555 F NPM . N11 ? ? A FE2 102 A NPM 203 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc14 metalc ? ? D FE2 . FE ? ? ? 1_555 F NPM . N12 ? ? A FE2 102 A NPM 203 1_555 ? ? ? ? ? ? ? 2.012 ? ? metalc15 metalc ? ? D FE2 . FE ? ? ? 1_555 G NPM . N12 ? ? A FE2 102 A NPM 204 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc16 metalc ? ? D FE2 . FE ? ? ? 1_555 G NPM . N11 ? ? A FE2 102 A NPM 204 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc17 metalc ? ? D FE2 . FE ? ? ? 1_555 H NPM . N12 ? ? A FE2 102 A NPM 205 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc18 metalc ? ? D FE2 . FE ? ? ? 1_555 H NPM . N11 ? ? A FE2 102 A NPM 205 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc19 metalc ? ? K FE2 . FE ? ? ? 1_555 N NPM . N12 ? ? B FE2 7 B NPM 8 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc20 metalc ? ? K FE2 . FE ? ? ? 1_555 N NPM . N11 ? ? B FE2 7 B NPM 8 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc21 metalc ? ? K FE2 . FE ? ? ? 1_555 L NPM . N11 ? ? B FE2 7 B NPM 9 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc22 metalc ? ? K FE2 . FE ? ? ? 1_555 L NPM . N12 ? ? B FE2 7 B NPM 9 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc23 metalc ? ? K FE2 . FE ? ? ? 1_555 M NPM . N12 ? ? B FE2 7 B NPM 10 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc24 metalc ? ? K FE2 . FE ? ? ? 1_555 M NPM . N11 ? ? B FE2 7 B NPM 10 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc25 metalc ? ? N NPM . N13 ? ? ? 1_555 J FE2 . FE ? ? B NPM 8 B FE2 101 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc26 metalc ? ? N NPM . N14 ? ? ? 1_555 J FE2 . FE ? ? B NPM 8 B FE2 101 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc27 metalc ? ? L NPM . N13 ? ? ? 1_555 J FE2 . FE ? ? B NPM 9 B FE2 101 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc28 metalc ? ? L NPM . N14 ? ? ? 1_555 J FE2 . FE ? ? B NPM 9 B FE2 101 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc29 metalc ? ? M NPM . N13 ? ? ? 1_555 J FE2 . FE ? ? B NPM 10 B FE2 101 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc30 metalc ? ? M NPM . N14 ? ? ? 1_555 J FE2 . FE ? ? B NPM 10 B FE2 101 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc31 metalc ? ? I FE2 . FE ? ? ? 1_555 O NPM . N11 ? ? B FE2 102 B NPM 203 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc32 metalc ? ? I FE2 . FE ? ? ? 1_555 O NPM . N12 ? ? B FE2 102 B NPM 203 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc33 metalc ? ? I FE2 . FE ? ? ? 1_555 P NPM . N12 ? ? B FE2 102 B NPM 204 1_555 ? ? ? ? ? ? ? 1.977 ? ? metalc34 metalc ? ? I FE2 . FE ? ? ? 1_555 P NPM . N11 ? ? B FE2 102 B NPM 204 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc35 metalc ? ? I FE2 . FE ? ? ? 1_555 Q NPM . N11 ? ? B FE2 102 B NPM 205 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc36 metalc ? ? I FE2 . FE ? ? ? 1_555 Q NPM . N12 ? ? B FE2 102 B NPM 205 1_555 ? ? ? ? ? ? ? 1.992 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N14 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N13 ? O NPM . ? B NPM 203 ? 1_555 81.3 ? 2 N14 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N13 ? P NPM . ? B NPM 204 ? 1_555 92.0 ? 3 N13 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N13 ? P NPM . ? B NPM 204 ? 1_555 95.4 ? 4 N14 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N14 ? P NPM . ? B NPM 204 ? 1_555 98.9 ? 5 N13 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N14 ? P NPM . ? B NPM 204 ? 1_555 179.0 ? 6 N13 ? P NPM . ? B NPM 204 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N14 ? P NPM . ? B NPM 204 ? 1_555 83.6 ? 7 N14 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N14 ? Q NPM . ? B NPM 205 ? 1_555 97.0 ? 8 N13 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N14 ? Q NPM . ? B NPM 205 ? 1_555 87.6 ? 9 N13 ? P NPM . ? B NPM 204 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N14 ? Q NPM . ? B NPM 205 ? 1_555 170.8 ? 10 N14 ? P NPM . ? B NPM 204 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N14 ? Q NPM . ? B NPM 205 ? 1_555 93.3 ? 11 N14 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N13 ? Q NPM . ? B NPM 205 ? 1_555 174.4 ? 12 N13 ? O NPM . ? B NPM 203 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N13 ? Q NPM . ? B NPM 205 ? 1_555 93.5 ? 13 N13 ? P NPM . ? B NPM 204 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N13 ? Q NPM . ? B NPM 205 ? 1_555 86.2 ? 14 N14 ? P NPM . ? B NPM 204 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N13 ? Q NPM . ? B NPM 205 ? 1_555 86.3 ? 15 N14 ? Q NPM . ? B NPM 205 ? 1_555 FE ? E FE2 . ? A FE2 7 ? 1_555 N13 ? Q NPM . ? B NPM 205 ? 1_555 84.9 ? 16 N14 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N13 ? F NPM . ? A NPM 203 ? 1_555 82.3 ? 17 N14 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N13 ? G NPM . ? A NPM 204 ? 1_555 88.4 ? 18 N13 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N13 ? G NPM . ? A NPM 204 ? 1_555 91.7 ? 19 N14 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N14 ? G NPM . ? A NPM 204 ? 1_555 104.0 ? 20 N13 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N14 ? G NPM . ? A NPM 204 ? 1_555 168.8 ? 21 N13 ? G NPM . ? A NPM 204 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N14 ? G NPM . ? A NPM 204 ? 1_555 79.4 ? 22 N14 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N13 ? H NPM . ? A NPM 205 ? 1_555 165.9 ? 23 N13 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N13 ? H NPM . ? A NPM 205 ? 1_555 88.5 ? 24 N13 ? G NPM . ? A NPM 204 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N13 ? H NPM . ? A NPM 205 ? 1_555 81.2 ? 25 N14 ? G NPM . ? A NPM 204 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N13 ? H NPM . ? A NPM 205 ? 1_555 83.5 ? 26 N14 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N14 ? H NPM . ? A NPM 205 ? 1_555 101.7 ? 27 N13 ? F NPM . ? A NPM 203 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N14 ? H NPM . ? A NPM 205 ? 1_555 95.2 ? 28 N13 ? G NPM . ? A NPM 204 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N14 ? H NPM . ? A NPM 205 ? 1_555 168.5 ? 29 N14 ? G NPM . ? A NPM 204 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N14 ? H NPM . ? A NPM 205 ? 1_555 92.6 ? 30 N13 ? H NPM . ? A NPM 205 ? 1_555 FE ? C FE2 . ? A FE2 101 ? 1_555 N14 ? H NPM . ? A NPM 205 ? 1_555 89.6 ? 31 N11 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N12 ? F NPM . ? A NPM 203 ? 1_555 79.3 ? 32 N11 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N12 ? G NPM . ? A NPM 204 ? 1_555 164.2 ? 33 N12 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N12 ? G NPM . ? A NPM 204 ? 1_555 100.5 ? 34 N11 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N11 ? G NPM . ? A NPM 204 ? 1_555 109.4 ? 35 N12 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N11 ? G NPM . ? A NPM 204 ? 1_555 108.8 ? 36 N12 ? G NPM . ? A NPM 204 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N11 ? G NPM . ? A NPM 204 ? 1_555 85.7 ? 37 N11 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N12 ? H NPM . ? A NPM 205 ? 1_555 76.4 ? 38 N12 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N12 ? H NPM . ? A NPM 205 ? 1_555 82.2 ? 39 N12 ? G NPM . ? A NPM 204 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N12 ? H NPM . ? A NPM 205 ? 1_555 87.9 ? 40 N11 ? G NPM . ? A NPM 204 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N12 ? H NPM . ? A NPM 205 ? 1_555 168.1 ? 41 N11 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N11 ? H NPM . ? A NPM 205 ? 1_555 90.2 ? 42 N12 ? F NPM . ? A NPM 203 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N11 ? H NPM . ? A NPM 205 ? 1_555 163.5 ? 43 N12 ? G NPM . ? A NPM 204 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N11 ? H NPM . ? A NPM 205 ? 1_555 86.1 ? 44 N11 ? G NPM . ? A NPM 204 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N11 ? H NPM . ? A NPM 205 ? 1_555 86.6 ? 45 N12 ? H NPM . ? A NPM 205 ? 1_555 FE ? D FE2 . ? A FE2 102 ? 1_555 N11 ? H NPM . ? A NPM 205 ? 1_555 83.0 ? 46 N12 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N11 ? N NPM . ? B NPM 8 ? 1_555 78.7 ? 47 N12 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N11 ? L NPM . ? B NPM 9 ? 1_555 104.2 ? 48 N11 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N11 ? L NPM . ? B NPM 9 ? 1_555 101.9 ? 49 N12 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N12 ? L NPM . ? B NPM 9 ? 1_555 103.5 ? 50 N11 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N12 ? L NPM . ? B NPM 9 ? 1_555 176.5 ? 51 N11 ? L NPM . ? B NPM 9 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N12 ? L NPM . ? B NPM 9 ? 1_555 80.3 ? 52 N12 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N12 ? M NPM . ? B NPM 10 ? 1_555 82.5 ? 53 N11 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N12 ? M NPM . ? B NPM 10 ? 1_555 82.0 ? 54 N11 ? L NPM . ? B NPM 9 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N12 ? M NPM . ? B NPM 10 ? 1_555 172.7 ? 55 N12 ? L NPM . ? B NPM 9 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N12 ? M NPM . ? B NPM 10 ? 1_555 95.5 ? 56 N12 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N11 ? M NPM . ? B NPM 10 ? 1_555 158.4 ? 57 N11 ? N NPM . ? B NPM 8 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N11 ? M NPM . ? B NPM 10 ? 1_555 86.3 ? 58 N11 ? L NPM . ? B NPM 9 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N11 ? M NPM . ? B NPM 10 ? 1_555 94.0 ? 59 N12 ? L NPM . ? B NPM 9 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N11 ? M NPM . ? B NPM 10 ? 1_555 90.8 ? 60 N12 ? M NPM . ? B NPM 10 ? 1_555 FE ? K FE2 . ? B FE2 7 ? 1_555 N11 ? M NPM . ? B NPM 10 ? 1_555 80.1 ? 61 N13 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? N NPM . ? B NPM 8 ? 1_555 82.2 ? 62 N13 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N13 ? L NPM . ? B NPM 9 ? 1_555 101.5 ? 63 N14 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N13 ? L NPM . ? B NPM 9 ? 1_555 100.3 ? 64 N13 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? L NPM . ? B NPM 9 ? 1_555 173.8 ? 65 N14 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? L NPM . ? B NPM 9 ? 1_555 91.9 ? 66 N13 ? L NPM . ? B NPM 9 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? L NPM . ? B NPM 9 ? 1_555 81.5 ? 67 N13 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N13 ? M NPM . ? B NPM 10 ? 1_555 94.1 ? 68 N14 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N13 ? M NPM . ? B NPM 10 ? 1_555 162.7 ? 69 N13 ? L NPM . ? B NPM 9 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N13 ? M NPM . ? B NPM 10 ? 1_555 96.9 ? 70 N14 ? L NPM . ? B NPM 9 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N13 ? M NPM . ? B NPM 10 ? 1_555 91.0 ? 71 N13 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? M NPM . ? B NPM 10 ? 1_555 89.2 ? 72 N14 ? N NPM . ? B NPM 8 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? M NPM . ? B NPM 10 ? 1_555 81.8 ? 73 N13 ? L NPM . ? B NPM 9 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? M NPM . ? B NPM 10 ? 1_555 169.2 ? 74 N14 ? L NPM . ? B NPM 9 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? M NPM . ? B NPM 10 ? 1_555 87.9 ? 75 N13 ? M NPM . ? B NPM 10 ? 1_555 FE ? J FE2 . ? B FE2 101 ? 1_555 N14 ? M NPM . ? B NPM 10 ? 1_555 81.2 ? 76 N11 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N12 ? O NPM . ? B NPM 203 ? 1_555 86.2 ? 77 N11 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N12 ? P NPM . ? B NPM 204 ? 1_555 172.8 ? 78 N12 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N12 ? P NPM . ? B NPM 204 ? 1_555 90.1 ? 79 N11 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N11 ? P NPM . ? B NPM 204 ? 1_555 93.3 ? 80 N12 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N11 ? P NPM . ? B NPM 204 ? 1_555 97.4 ? 81 N12 ? P NPM . ? B NPM 204 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N11 ? P NPM . ? B NPM 204 ? 1_555 81.1 ? 82 N11 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N11 ? Q NPM . ? B NPM 205 ? 1_555 80.4 ? 83 N12 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N11 ? Q NPM . ? B NPM 205 ? 1_555 165.6 ? 84 N12 ? P NPM . ? B NPM 204 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N11 ? Q NPM . ? B NPM 205 ? 1_555 103.7 ? 85 N11 ? P NPM . ? B NPM 204 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N11 ? Q NPM . ? B NPM 205 ? 1_555 88.9 ? 86 N11 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N12 ? Q NPM . ? B NPM 205 ? 1_555 86.8 ? 87 N12 ? O NPM . ? B NPM 203 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N12 ? Q NPM . ? B NPM 205 ? 1_555 91.3 ? 88 N12 ? P NPM . ? B NPM 204 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N12 ? Q NPM . ? B NPM 205 ? 1_555 99.4 ? 89 N11 ? P NPM . ? B NPM 204 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N12 ? Q NPM . ? B NPM 205 ? 1_555 171.3 ? 90 N11 ? Q NPM . ? B NPM 205 ? 1_555 FE ? I FE2 . ? B FE2 102 ? 1_555 N12 ? Q NPM . ? B NPM 205 ? 1_555 82.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FE2 101 ? 9 'BINDING SITE FOR RESIDUE FE2 A 101' AC2 Software A FE2 102 ? 7 'BINDING SITE FOR RESIDUE FE2 A 102' AC3 Software A FE2 7 ? 7 'BINDING SITE FOR RESIDUE FE2 A 7' AC4 Software A NPM 203 ? 14 'BINDING SITE FOR RESIDUE NPM A 203' AC5 Software A NPM 204 ? 13 'BINDING SITE FOR RESIDUE NPM A 204' AC6 Software A NPM 205 ? 15 'BINDING SITE FOR RESIDUE NPM A 205' AC7 Software B FE2 7 ? 19 'BINDING SITE FOR RESIDUE FE2 B 7' AC8 Software B NPM 8 ? 28 'BINDING SITE FOR RESIDUE NPM B 8' AC9 Software B NPM 9 ? 27 'BINDING SITE FOR RESIDUE NPM B 9' BC1 Software B NPM 10 ? 27 'BINDING SITE FOR RESIDUE NPM B 10' BC2 Software B FE2 101 ? 20 'BINDING SITE FOR RESIDUE FE2 B 101' BC3 Software B FE2 102 ? 7 'BINDING SITE FOR RESIDUE FE2 B 102' BC4 Software B NPM 203 ? 11 'BINDING SITE FOR RESIDUE NPM B 203' BC5 Software B NPM 204 ? 12 'BINDING SITE FOR RESIDUE NPM B 204' BC6 Software B NPM 205 ? 11 'BINDING SITE FOR RESIDUE NPM B 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 NPM F . ? NPM A 203 . ? 10_655 ? 2 AC1 9 NPM F . ? NPM A 203 . ? 1_555 ? 3 AC1 9 NPM F . ? NPM A 203 . ? 7_564 ? 4 AC1 9 NPM G . ? NPM A 204 . ? 7_564 ? 5 AC1 9 NPM G . ? NPM A 204 . ? 10_655 ? 6 AC1 9 NPM G . ? NPM A 204 . ? 1_555 ? 7 AC1 9 NPM H . ? NPM A 205 . ? 10_655 ? 8 AC1 9 NPM H . ? NPM A 205 . ? 7_564 ? 9 AC1 9 NPM H . ? NPM A 205 . ? 1_555 ? 10 AC2 7 NPM F . ? NPM A 203 . ? 1_555 ? 11 AC2 7 NPM F . ? NPM A 203 . ? 7_564 ? 12 AC2 7 NPM F . ? NPM A 203 . ? 10_655 ? 13 AC2 7 NPM G . ? NPM A 204 . ? 1_555 ? 14 AC2 7 NPM H . ? NPM A 205 . ? 10_655 ? 15 AC2 7 NPM H . ? NPM A 205 . ? 7_564 ? 16 AC2 7 NPM H . ? NPM A 205 . ? 1_555 ? 17 AC3 7 FE2 I . ? FE2 B 102 . ? 18_654 ? 18 AC3 7 NPM O . ? NPM B 203 . ? 18_654 ? 19 AC3 7 NPM O . ? NPM B 203 . ? 1_555 ? 20 AC3 7 NPM P . ? NPM B 204 . ? 1_555 ? 21 AC3 7 NPM P . ? NPM B 204 . ? 18_654 ? 22 AC3 7 NPM Q . ? NPM B 205 . ? 1_555 ? 23 AC3 7 NPM Q . ? NPM B 205 . ? 18_654 ? 24 AC4 14 DT A 3 ? DT A 3 . ? 1_555 ? 25 AC4 14 DA A 4 ? DA A 4 . ? 1_555 ? 26 AC4 14 FE2 C . ? FE2 A 101 . ? 10_655 ? 27 AC4 14 FE2 C . ? FE2 A 101 . ? 7_564 ? 28 AC4 14 FE2 C . ? FE2 A 101 . ? 1_555 ? 29 AC4 14 FE2 D . ? FE2 A 102 . ? 1_555 ? 30 AC4 14 FE2 D . ? FE2 A 102 . ? 10_655 ? 31 AC4 14 FE2 D . ? FE2 A 102 . ? 7_564 ? 32 AC4 14 NPM G . ? NPM A 204 . ? 10_655 ? 33 AC4 14 NPM G . ? NPM A 204 . ? 1_555 ? 34 AC4 14 NPM G . ? NPM A 204 . ? 7_564 ? 35 AC4 14 NPM H . ? NPM A 205 . ? 10_655 ? 36 AC4 14 NPM H . ? NPM A 205 . ? 1_555 ? 37 AC4 14 NPM H . ? NPM A 205 . ? 7_564 ? 38 AC5 13 DT A 3 ? DT A 3 . ? 7_564 ? 39 AC5 13 DA A 4 ? DA A 4 . ? 7_564 ? 40 AC5 13 DC A 5 ? DC A 5 . ? 7_564 ? 41 AC5 13 FE2 C . ? FE2 A 101 . ? 10_655 ? 42 AC5 13 FE2 C . ? FE2 A 101 . ? 7_564 ? 43 AC5 13 FE2 C . ? FE2 A 101 . ? 1_555 ? 44 AC5 13 FE2 D . ? FE2 A 102 . ? 1_555 ? 45 AC5 13 NPM F . ? NPM A 203 . ? 7_564 ? 46 AC5 13 NPM F . ? NPM A 203 . ? 1_555 ? 47 AC5 13 NPM F . ? NPM A 203 . ? 10_655 ? 48 AC5 13 NPM H . ? NPM A 205 . ? 7_564 ? 49 AC5 13 NPM H . ? NPM A 205 . ? 10_655 ? 50 AC5 13 NPM H . ? NPM A 205 . ? 1_555 ? 51 AC6 15 DT A 3 ? DT A 3 . ? 10_655 ? 52 AC6 15 DA A 4 ? DA A 4 . ? 10_655 ? 53 AC6 15 FE2 C . ? FE2 A 101 . ? 10_655 ? 54 AC6 15 FE2 C . ? FE2 A 101 . ? 1_555 ? 55 AC6 15 FE2 C . ? FE2 A 101 . ? 7_564 ? 56 AC6 15 FE2 D . ? FE2 A 102 . ? 7_564 ? 57 AC6 15 FE2 D . ? FE2 A 102 . ? 1_555 ? 58 AC6 15 FE2 D . ? FE2 A 102 . ? 10_655 ? 59 AC6 15 NPM F . ? NPM A 203 . ? 1_555 ? 60 AC6 15 NPM F . ? NPM A 203 . ? 7_564 ? 61 AC6 15 NPM F . ? NPM A 203 . ? 10_655 ? 62 AC6 15 NPM G . ? NPM A 204 . ? 10_655 ? 63 AC6 15 NPM G . ? NPM A 204 . ? 1_555 ? 64 AC6 15 NPM G . ? NPM A 204 . ? 7_564 ? 65 AC6 15 HOH R . ? HOH A 306 . ? 10_655 ? 66 AC7 19 NPM N . ? NPM B 8 . ? 22_554 ? 67 AC7 19 NPM N . ? NPM B 8 . ? 14_665 ? 68 AC7 19 NPM N . ? NPM B 8 . ? 11_556 ? 69 AC7 19 NPM N . ? NPM B 8 . ? 1_555 ? 70 AC7 19 NPM L . ? NPM B 9 . ? 14_665 ? 71 AC7 19 NPM L . ? NPM B 9 . ? 8_645 ? 72 AC7 19 NPM L . ? NPM B 9 . ? 22_554 ? 73 AC7 19 NPM L . ? NPM B 9 . ? 11_556 ? 74 AC7 19 NPM L . ? NPM B 9 . ? 1_555 ? 75 AC7 19 NPM L . ? NPM B 9 . ? 18_654 ? 76 AC7 19 NPM M . ? NPM B 10 . ? 22_554 ? 77 AC7 19 NPM M . ? NPM B 10 . ? 11_556 ? 78 AC7 19 NPM M . ? NPM B 10 . ? 1_555 ? 79 AC7 19 NPM M . ? NPM B 10 . ? 14_665 ? 80 AC7 19 NPM M . ? NPM B 10 . ? 18_654 ? 81 AC7 19 NPM M . ? NPM B 10 . ? 8_645 ? 82 AC7 19 FE2 J . ? FE2 B 101 . ? 22_554 ? 83 AC7 19 FE2 J . ? FE2 B 101 . ? 18_654 ? 84 AC7 19 FE2 J . ? FE2 B 101 . ? 14_665 ? 85 AC8 28 DT B 3 ? DT B 3 . ? 1_555 ? 86 AC8 28 DT B 3 ? DT B 3 . ? 22_554 ? 87 AC8 28 DA B 4 ? DA B 4 . ? 1_555 ? 88 AC8 28 DA B 4 ? DA B 4 . ? 14_665 ? 89 AC8 28 DA B 4 ? DA B 4 . ? 22_554 ? 90 AC8 28 FE2 K . ? FE2 B 7 . ? 8_645 ? 91 AC8 28 FE2 K . ? FE2 B 7 . ? 1_555 ? 92 AC8 28 FE2 K . ? FE2 B 7 . ? 22_554 ? 93 AC8 28 FE2 K . ? FE2 B 7 . ? 18_654 ? 94 AC8 28 FE2 K . ? FE2 B 7 . ? 11_556 ? 95 AC8 28 FE2 K . ? FE2 B 7 . ? 14_665 ? 96 AC8 28 NPM L . ? NPM B 9 . ? 22_554 ? 97 AC8 28 NPM L . ? NPM B 9 . ? 11_556 ? 98 AC8 28 NPM L . ? NPM B 9 . ? 18_654 ? 99 AC8 28 NPM L . ? NPM B 9 . ? 1_555 ? 100 AC8 28 NPM L . ? NPM B 9 . ? 14_665 ? 101 AC8 28 NPM L . ? NPM B 9 . ? 8_645 ? 102 AC8 28 NPM M . ? NPM B 10 . ? 11_556 ? 103 AC8 28 NPM M . ? NPM B 10 . ? 8_645 ? 104 AC8 28 NPM M . ? NPM B 10 . ? 14_665 ? 105 AC8 28 NPM M . ? NPM B 10 . ? 18_654 ? 106 AC8 28 NPM M . ? NPM B 10 . ? 1_555 ? 107 AC8 28 FE2 J . ? FE2 B 101 . ? 11_556 ? 108 AC8 28 FE2 J . ? FE2 B 101 . ? 8_645 ? 109 AC8 28 FE2 J . ? FE2 B 101 . ? 1_555 ? 110 AC8 28 FE2 J . ? FE2 B 101 . ? 22_554 ? 111 AC8 28 FE2 J . ? FE2 B 101 . ? 18_654 ? 112 AC8 28 FE2 J . ? FE2 B 101 . ? 14_665 ? 113 AC9 27 DT B 3 ? DT B 3 . ? 18_654 ? 114 AC9 27 DT B 3 ? DT B 3 . ? 8_645 ? 115 AC9 27 DA B 4 ? DA B 4 . ? 8_645 ? 116 AC9 27 FE2 K . ? FE2 B 7 . ? 8_645 ? 117 AC9 27 FE2 K . ? FE2 B 7 . ? 11_556 ? 118 AC9 27 FE2 K . ? FE2 B 7 . ? 1_555 ? 119 AC9 27 FE2 K . ? FE2 B 7 . ? 22_554 ? 120 AC9 27 FE2 K . ? FE2 B 7 . ? 14_665 ? 121 AC9 27 FE2 K . ? FE2 B 7 . ? 18_654 ? 122 AC9 27 NPM N . ? NPM B 8 . ? 22_554 ? 123 AC9 27 NPM N . ? NPM B 8 . ? 18_654 ? 124 AC9 27 NPM N . ? NPM B 8 . ? 8_645 ? 125 AC9 27 NPM N . ? NPM B 8 . ? 14_665 ? 126 AC9 27 NPM N . ? NPM B 8 . ? 1_555 ? 127 AC9 27 NPM N . ? NPM B 8 . ? 11_556 ? 128 AC9 27 NPM M . ? NPM B 10 . ? 1_555 ? 129 AC9 27 NPM M . ? NPM B 10 . ? 22_554 ? 130 AC9 27 NPM M . ? NPM B 10 . ? 14_665 ? 131 AC9 27 NPM M . ? NPM B 10 . ? 11_556 ? 132 AC9 27 NPM M . ? NPM B 10 . ? 8_645 ? 133 AC9 27 NPM M . ? NPM B 10 . ? 18_654 ? 134 AC9 27 FE2 J . ? FE2 B 101 . ? 11_556 ? 135 AC9 27 FE2 J . ? FE2 B 101 . ? 8_645 ? 136 AC9 27 FE2 J . ? FE2 B 101 . ? 1_555 ? 137 AC9 27 FE2 J . ? FE2 B 101 . ? 22_554 ? 138 AC9 27 FE2 J . ? FE2 B 101 . ? 18_654 ? 139 AC9 27 FE2 J . ? FE2 B 101 . ? 14_665 ? 140 BC1 27 DT B 3 ? DT B 3 . ? 11_556 ? 141 BC1 27 DT B 3 ? DT B 3 . ? 14_665 ? 142 BC1 27 DA B 4 ? DA B 4 . ? 11_556 ? 143 BC1 27 DA B 4 ? DA B 4 . ? 14_665 ? 144 BC1 27 DC B 5 ? DC B 5 . ? 14_665 ? 145 BC1 27 FE2 K . ? FE2 B 7 . ? 11_556 ? 146 BC1 27 FE2 K . ? FE2 B 7 . ? 1_555 ? 147 BC1 27 FE2 K . ? FE2 B 7 . ? 18_654 ? 148 BC1 27 FE2 K . ? FE2 B 7 . ? 14_665 ? 149 BC1 27 FE2 K . ? FE2 B 7 . ? 22_554 ? 150 BC1 27 FE2 K . ? FE2 B 7 . ? 8_645 ? 151 BC1 27 NPM N . ? NPM B 8 . ? 18_654 ? 152 BC1 27 NPM N . ? NPM B 8 . ? 11_556 ? 153 BC1 27 NPM N . ? NPM B 8 . ? 1_555 ? 154 BC1 27 NPM N . ? NPM B 8 . ? 14_665 ? 155 BC1 27 NPM L . ? NPM B 9 . ? 11_556 ? 156 BC1 27 NPM L . ? NPM B 9 . ? 18_654 ? 157 BC1 27 NPM L . ? NPM B 9 . ? 8_645 ? 158 BC1 27 NPM L . ? NPM B 9 . ? 22_554 ? 159 BC1 27 NPM L . ? NPM B 9 . ? 14_665 ? 160 BC1 27 NPM L . ? NPM B 9 . ? 1_555 ? 161 BC1 27 FE2 J . ? FE2 B 101 . ? 11_556 ? 162 BC1 27 FE2 J . ? FE2 B 101 . ? 8_645 ? 163 BC1 27 FE2 J . ? FE2 B 101 . ? 1_555 ? 164 BC1 27 FE2 J . ? FE2 B 101 . ? 22_554 ? 165 BC1 27 FE2 J . ? FE2 B 101 . ? 18_654 ? 166 BC1 27 FE2 J . ? FE2 B 101 . ? 14_665 ? 167 BC2 20 FE2 K . ? FE2 B 7 . ? 14_665 ? 168 BC2 20 FE2 K . ? FE2 B 7 . ? 18_654 ? 169 BC2 20 FE2 K . ? FE2 B 7 . ? 22_554 ? 170 BC2 20 NPM N . ? NPM B 8 . ? 22_554 ? 171 BC2 20 NPM N . ? NPM B 8 . ? 11_556 ? 172 BC2 20 NPM N . ? NPM B 8 . ? 18_654 ? 173 BC2 20 NPM N . ? NPM B 8 . ? 14_665 ? 174 BC2 20 NPM N . ? NPM B 8 . ? 1_555 ? 175 BC2 20 NPM L . ? NPM B 9 . ? 1_555 ? 176 BC2 20 NPM L . ? NPM B 9 . ? 8_645 ? 177 BC2 20 NPM L . ? NPM B 9 . ? 22_554 ? 178 BC2 20 NPM L . ? NPM B 9 . ? 14_665 ? 179 BC2 20 NPM L . ? NPM B 9 . ? 11_556 ? 180 BC2 20 NPM L . ? NPM B 9 . ? 18_654 ? 181 BC2 20 NPM M . ? NPM B 10 . ? 1_555 ? 182 BC2 20 NPM M . ? NPM B 10 . ? 22_554 ? 183 BC2 20 NPM M . ? NPM B 10 . ? 11_556 ? 184 BC2 20 NPM M . ? NPM B 10 . ? 18_654 ? 185 BC2 20 NPM M . ? NPM B 10 . ? 14_665 ? 186 BC2 20 NPM M . ? NPM B 10 . ? 8_645 ? 187 BC3 7 FE2 E . ? FE2 A 7 . ? 18_654 ? 188 BC3 7 NPM O . ? NPM B 203 . ? 1_555 ? 189 BC3 7 NPM O . ? NPM B 203 . ? 18_654 ? 190 BC3 7 NPM P . ? NPM B 204 . ? 1_555 ? 191 BC3 7 NPM P . ? NPM B 204 . ? 18_654 ? 192 BC3 7 NPM Q . ? NPM B 205 . ? 1_555 ? 193 BC3 7 NPM Q . ? NPM B 205 . ? 18_654 ? 194 BC4 11 DC A 1 ? DC A 1 . ? 18_654 ? 195 BC4 11 FE2 E . ? FE2 A 7 . ? 18_654 ? 196 BC4 11 FE2 E . ? FE2 A 7 . ? 1_555 ? 197 BC4 11 DC B 1 ? DC B 1 . ? 8_645 ? 198 BC4 11 DG B 6 ? DG B 6 . ? 1_555 ? 199 BC4 11 FE2 I . ? FE2 B 102 . ? 18_654 ? 200 BC4 11 FE2 I . ? FE2 B 102 . ? 1_555 ? 201 BC4 11 NPM P . ? NPM B 204 . ? 18_654 ? 202 BC4 11 NPM P . ? NPM B 204 . ? 1_555 ? 203 BC4 11 NPM Q . ? NPM B 205 . ? 18_654 ? 204 BC4 11 NPM Q . ? NPM B 205 . ? 1_555 ? 205 BC5 12 DC A 1 ? DC A 1 . ? 1_555 ? 206 BC5 12 DG A 6 ? DG A 6 . ? 7_564 ? 207 BC5 12 FE2 E . ? FE2 A 7 . ? 18_654 ? 208 BC5 12 FE2 E . ? FE2 A 7 . ? 1_555 ? 209 BC5 12 DC B 1 ? DC B 1 . ? 22_554 ? 210 BC5 12 DG B 6 ? DG B 6 . ? 1_555 ? 211 BC5 12 FE2 I . ? FE2 B 102 . ? 18_654 ? 212 BC5 12 FE2 I . ? FE2 B 102 . ? 1_555 ? 213 BC5 12 NPM O . ? NPM B 203 . ? 1_555 ? 214 BC5 12 NPM O . ? NPM B 203 . ? 18_654 ? 215 BC5 12 NPM Q . ? NPM B 205 . ? 18_654 ? 216 BC5 12 NPM Q . ? NPM B 205 . ? 1_555 ? 217 BC6 11 DG A 6 ? DG A 6 . ? 7_564 ? 218 BC6 11 DG A 6 ? DG A 6 . ? 21_645 ? 219 BC6 11 FE2 E . ? FE2 A 7 . ? 18_654 ? 220 BC6 11 FE2 E . ? FE2 A 7 . ? 1_555 ? 221 BC6 11 DG B 6 ? DG B 6 . ? 1_555 ? 222 BC6 11 FE2 I . ? FE2 B 102 . ? 1_555 ? 223 BC6 11 FE2 I . ? FE2 B 102 . ? 18_654 ? 224 BC6 11 NPM O . ? NPM B 203 . ? 1_555 ? 225 BC6 11 NPM O . ? NPM B 203 . ? 18_654 ? 226 BC6 11 NPM P . ? NPM B 204 . ? 18_654 ? 227 BC6 11 NPM P . ? NPM B 204 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.363 1.419 -0.056 0.006 N 2 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.376 1.419 -0.043 0.006 N 3 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.340 1.391 -0.051 0.007 N 4 1 "O3'" A DT 3 ? ? "C3'" A DT 3 ? ? 1.344 1.419 -0.075 0.006 N 5 1 C4 A DT 3 ? ? C5 A DT 3 ? ? 1.386 1.445 -0.059 0.009 N 6 1 "O3'" A DA 4 ? ? "C3'" A DA 4 ? ? 1.374 1.419 -0.045 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.30 104.50 -3.20 0.40 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 124.61 121.90 2.71 0.40 N 3 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 123.43 118.90 4.53 0.60 N 4 1 C2 A DC 1 ? ? N1 A DC 1 ? ? "C1'" A DC 1 ? ? 125.52 118.80 6.72 1.10 N 5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.54 108.30 5.24 0.30 N 6 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 115.98 119.90 -3.92 0.60 N 7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 132.95 128.60 4.35 0.60 N 8 1 N3 A DT 3 ? ? C4 A DT 3 ? ? O4 A DT 3 ? ? 123.94 119.90 4.04 0.60 N 9 1 C5 A DT 3 ? ? C4 A DT 3 ? ? O4 A DT 3 ? ? 119.28 124.90 -5.62 0.70 N 10 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 125.03 129.30 -4.27 0.50 N 11 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.48 109.40 -5.92 0.80 N 12 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 98.37 105.90 -7.53 0.80 N 13 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 97.99 102.20 -4.21 0.70 N 14 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.35 108.30 2.05 0.30 N 15 1 N3 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 131.70 128.60 3.10 0.50 N 16 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 113.03 108.30 4.73 0.30 N 17 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 110.27 108.30 1.97 0.30 N 18 1 N3 B DT 3 ? ? C4 B DT 3 ? ? O4 B DT 3 ? ? 123.55 119.90 3.65 0.60 N 19 1 C5 B DT 3 ? ? C4 B DT 3 ? ? O4 B DT 3 ? ? 120.63 124.90 -4.27 0.70 N 20 1 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 102.06 104.50 -2.44 0.40 N 21 1 "O4'" B DG 6 ? ? "C1'" B DG 6 ? ? N9 B DG 6 ? ? 114.25 108.30 5.95 0.30 N # _pdbx_entry_details.entry_id 3I1D _pdbx_entry_details.nonpolymer_details ;THERE ARE THREE LIGAND CLUSTERS OF NPM IN THE STRUCTURE, EACH HAVING WITH PSEUDO-3-FOLD SYMMETRY AND CONSISTING OF THREE NPM COMPOUNDS COORDINATED BY TWO FE(2+) IONS. GROUP 1 INCLUDES RESIDUES A101, A102, A203, A204, A205; GROUP 2 B7, B8, B9, B10, B102; AND GROUP 3 A7, B102, B203, B204, B205. ALTHOUGH ALL GROUPS CONSIST OF FE(2+) IONS AND THE SAME CHEMICAL COMPONENT NPM, THE OVERALL TOPOLOGY OF THE THREE GROUPS ARE DIFFERENT, WITH GROUP 1 AND 2 AS ONE TYPE (THE M HELICAL ENANTIOMER), AND GROUP 3 AS THE OTHER (THE P HELICAL ENANTIOMER) ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;AUTHORS STATE THAT THE EXTENSIVE DISORDER OF THE DNA-BOUND CYLINDER MOLECULES AROUND SYMMETRY-RELATED SITES IS REAL SINCE IT ALSO OCCURS WHEN THE STRUCTURE IS REFINED IN LOWER-SYMMETRY SPACE GROUPS (E.G. P1) AGAINST APPROPRIATELY MERGED DATA, THAT THEREFORE THE DEPOSITED SPACE GROUP IS CORRECT AND THAT THE CURRENT MODEL IS THE CORRECT WAY TO DESCRIBE THE STRUCTURE. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 FE2 FE FE N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 NPM N11 N Y N 148 NPM N12 N N N 149 NPM N13 N N N 150 NPM N14 N Y N 151 NPM C1A C Y N 152 NPM C1B C Y N 153 NPM C1C C Y N 154 NPM C1D C Y N 155 NPM C1E C Y N 156 NPM C1F C N N 157 NPM C1G C Y N 158 NPM C1H C Y N 159 NPM C1I C Y N 160 NPM C1J C Y N 161 NPM C1K C Y N 162 NPM C1L C Y N 163 NPM C1M C N N 164 NPM C1N C Y N 165 NPM C1O C Y N 166 NPM C1P C Y N 167 NPM C1Q C Y N 168 NPM C1R C Y N 169 NPM C1S C Y N 170 NPM C1T C N N 171 NPM C1U C Y N 172 NPM C1V C Y N 173 NPM C1W C Y N 174 NPM C1X C Y N 175 NPM C1Y C Y N 176 NPM H1A H N N 177 NPM H1B H N N 178 NPM H1C H N N 179 NPM H1D H N N 180 NPM H1F H N N 181 NPM H1H H N N 182 NPM H1I H N N 183 NPM H1K H N N 184 NPM H1L H N N 185 NPM H1M1 H N N 186 NPM H1M2 H N N 187 NPM H1O H N N 188 NPM H1P H N N 189 NPM H1R H N N 190 NPM H1S H N N 191 NPM H1T H N N 192 NPM H1V H N N 193 NPM H1W H N N 194 NPM H1X H N N 195 NPM H1Y H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 NPM N11 C1A doub Y N 152 NPM N11 C1E sing Y N 153 NPM N12 C1F doub N N 154 NPM N12 C1G sing N N 155 NPM N13 C1Q sing N N 156 NPM N13 C1T doub N N 157 NPM N14 C1U sing Y N 158 NPM N14 C1Y doub Y N 159 NPM C1A C1B sing Y N 160 NPM C1A H1A sing N N 161 NPM C1B C1C doub Y N 162 NPM C1B H1B sing N N 163 NPM C1C C1D sing Y N 164 NPM C1C H1C sing N N 165 NPM C1D C1E doub Y N 166 NPM C1D H1D sing N N 167 NPM C1E C1F sing N N 168 NPM C1F H1F sing N N 169 NPM C1G C1H sing Y N 170 NPM C1G C1L doub Y N 171 NPM C1H C1I doub Y N 172 NPM C1H H1H sing N N 173 NPM C1I C1J sing Y N 174 NPM C1I H1I sing N N 175 NPM C1J C1K doub Y N 176 NPM C1J C1M sing N N 177 NPM C1K C1L sing Y N 178 NPM C1K H1K sing N N 179 NPM C1L H1L sing N N 180 NPM C1M C1N sing N N 181 NPM C1M H1M1 sing N N 182 NPM C1M H1M2 sing N N 183 NPM C1N C1O doub Y N 184 NPM C1N C1S sing Y N 185 NPM C1O C1P sing Y N 186 NPM C1O H1O sing N N 187 NPM C1P C1Q doub Y N 188 NPM C1P H1P sing N N 189 NPM C1Q C1R sing Y N 190 NPM C1R C1S doub Y N 191 NPM C1R H1R sing N N 192 NPM C1S H1S sing N N 193 NPM C1T C1U sing N N 194 NPM C1T H1T sing N N 195 NPM C1U C1V doub Y N 196 NPM C1V C1W sing Y N 197 NPM C1V H1V sing N N 198 NPM C1W C1X doub Y N 199 NPM C1W H1W sing N N 200 NPM C1X C1Y sing Y N 201 NPM C1X H1X sing N N 202 NPM C1Y H1Y sing N N 203 # _atom_sites.entry_id 3I1D _atom_sites.fract_transf_matrix[1][1] 0.013339 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013339 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013339 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O P # loop_