data_3I5L # _entry.id 3I5L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3I5L pdb_00003i5l 10.2210/pdb3i5l/pdb NDB NA0153 ? ? RCSB RCSB053992 ? ? WWPDB D_1000053992 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' entity 6 3 'Structure model' pdbx_entity_nonpoly 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_entity.pdbx_description' 5 3 'Structure model' '_pdbx_entity_nonpoly.name' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.value' 22 3 'Structure model' '_struct_conn.pdbx_dist_value' 23 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 25 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3I5L _pdbx_database_status.recvd_initial_deposition_date 2009-07-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3I5E _pdbx_database_related.details 'Duplex DNA without Polyamide Bound' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chenoweth, D.M.' 1 'Dervan, P.B.' 2 # _citation.id primary _citation.title 'Allosteric modulation of DNA by small molecules' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 106 _citation.page_first 13175 _citation.page_last 13179 _citation.year 2009 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19666554 _citation.pdbx_database_id_DOI 10.1073/pnas.0906532106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chenoweth, D.M.' 1 ? primary 'Dervan, P.B.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*AP*GP*GP*(C38)P*CP*TP*GP*G)-3'" 3171.889 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 5 ? ? ? ? 3 non-polymer syn ;(22R,51R)-22,51-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,61,64,6 5-docosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10( 65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone ; 1181.188 1 ? ? ? ? 4 water nat water 18.015 258 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DA)(DG)(DG)(C38)(DC)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAGGCCTGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 ;(22R,51R)-22,51-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,61,64,6 5-docosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10( 65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone ; 1P1 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 C38 n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Solid Phase Synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1P1 non-polymer . ;(22R,51R)-22,51-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,61,64,6 5-docosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10( 65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone ; 'Cyclic Polyamide' 'C52 H60 N24 O10' 1181.188 C38 'DNA linking' n "5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 I N3 O7 P' 433.094 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 C38 6 6 6 C38 C38 A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DA 3 3 3 DA DA B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 C38 6 6 6 C38 C38 B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DT 8 8 8 DT DT B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DG 10 10 10 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 601 601 CA CA A . D 3 1P1 1 500 500 1P1 1P1 B . E 2 CA 1 602 602 CA CA B . F 2 CA 1 603 603 CA CA B . G 2 CA 1 604 604 CA CA B . H 2 CA 1 605 605 CA CA B . I 4 HOH 1 113 113 HOH HOH A . I 4 HOH 2 116 116 HOH HOH A . I 4 HOH 3 117 117 HOH HOH A . I 4 HOH 4 118 118 HOH HOH A . I 4 HOH 5 119 119 HOH HOH A . I 4 HOH 6 128 128 HOH HOH A . I 4 HOH 7 130 130 HOH HOH A . I 4 HOH 8 138 138 HOH HOH A . I 4 HOH 9 140 140 HOH HOH A . I 4 HOH 10 143 143 HOH HOH A . I 4 HOH 11 144 144 HOH HOH A . I 4 HOH 12 149 149 HOH HOH A . I 4 HOH 13 152 152 HOH HOH A . I 4 HOH 14 154 154 HOH HOH A . I 4 HOH 15 156 156 HOH HOH A . I 4 HOH 16 157 157 HOH HOH A . I 4 HOH 17 159 159 HOH HOH A . I 4 HOH 18 161 161 HOH HOH A . I 4 HOH 19 162 162 HOH HOH A . I 4 HOH 20 164 164 HOH HOH A . I 4 HOH 21 168 168 HOH HOH A . I 4 HOH 22 169 169 HOH HOH A . I 4 HOH 23 176 176 HOH HOH A . I 4 HOH 24 178 178 HOH HOH A . I 4 HOH 25 181 181 HOH HOH A . I 4 HOH 26 182 182 HOH HOH A . I 4 HOH 27 183 183 HOH HOH A . I 4 HOH 28 186 186 HOH HOH A . I 4 HOH 29 189 189 HOH HOH A . I 4 HOH 30 190 190 HOH HOH A . I 4 HOH 31 191 191 HOH HOH A . I 4 HOH 32 192 192 HOH HOH A . I 4 HOH 33 193 193 HOH HOH A . I 4 HOH 34 195 195 HOH HOH A . I 4 HOH 35 196 196 HOH HOH A . I 4 HOH 36 198 198 HOH HOH A . I 4 HOH 37 202 202 HOH HOH A . I 4 HOH 38 203 203 HOH HOH A . I 4 HOH 39 204 204 HOH HOH A . I 4 HOH 40 205 205 HOH HOH A . I 4 HOH 41 207 207 HOH HOH A . I 4 HOH 42 209 209 HOH HOH A . I 4 HOH 43 213 213 HOH HOH A . I 4 HOH 44 215 215 HOH HOH A . I 4 HOH 45 216 216 HOH HOH A . I 4 HOH 46 217 217 HOH HOH A . I 4 HOH 47 218 218 HOH HOH A . I 4 HOH 48 223 223 HOH HOH A . I 4 HOH 49 225 225 HOH HOH A . I 4 HOH 50 227 227 HOH HOH A . I 4 HOH 51 229 229 HOH HOH A . I 4 HOH 52 230 230 HOH HOH A . I 4 HOH 53 232 232 HOH HOH A . I 4 HOH 54 235 235 HOH HOH A . I 4 HOH 55 238 238 HOH HOH A . I 4 HOH 56 239 239 HOH HOH A . I 4 HOH 57 242 242 HOH HOH A . I 4 HOH 58 243 243 HOH HOH A . I 4 HOH 59 244 244 HOH HOH A . I 4 HOH 60 249 249 HOH HOH A . I 4 HOH 61 251 251 HOH HOH A . I 4 HOH 62 254 254 HOH HOH A . I 4 HOH 63 257 257 HOH HOH A . I 4 HOH 64 261 261 HOH HOH A . I 4 HOH 65 262 262 HOH HOH A . I 4 HOH 66 263 263 HOH HOH A . I 4 HOH 67 266 266 HOH HOH A . I 4 HOH 68 269 269 HOH HOH A . I 4 HOH 69 270 270 HOH HOH A . I 4 HOH 70 274 274 HOH HOH A . I 4 HOH 71 276 276 HOH HOH A . I 4 HOH 72 280 280 HOH HOH A . I 4 HOH 73 283 283 HOH HOH A . I 4 HOH 74 284 284 HOH HOH A . I 4 HOH 75 285 285 HOH HOH A . I 4 HOH 76 286 286 HOH HOH A . I 4 HOH 77 287 287 HOH HOH A . I 4 HOH 78 291 291 HOH HOH A . I 4 HOH 79 292 292 HOH HOH A . I 4 HOH 80 293 293 HOH HOH A . I 4 HOH 81 295 295 HOH HOH A . I 4 HOH 82 304 304 HOH HOH A . I 4 HOH 83 308 308 HOH HOH A . I 4 HOH 84 311 311 HOH HOH A . I 4 HOH 85 312 312 HOH HOH A . I 4 HOH 86 316 316 HOH HOH A . I 4 HOH 87 318 318 HOH HOH A . I 4 HOH 88 323 323 HOH HOH A . I 4 HOH 89 324 324 HOH HOH A . I 4 HOH 90 325 325 HOH HOH A . I 4 HOH 91 331 331 HOH HOH A . I 4 HOH 92 332 332 HOH HOH A . I 4 HOH 93 336 336 HOH HOH A . I 4 HOH 94 340 340 HOH HOH A . I 4 HOH 95 342 342 HOH HOH A . I 4 HOH 96 343 343 HOH HOH A . I 4 HOH 97 345 345 HOH HOH A . I 4 HOH 98 347 347 HOH HOH A . I 4 HOH 99 349 349 HOH HOH A . I 4 HOH 100 350 350 HOH HOH A . I 4 HOH 101 351 351 HOH HOH A . I 4 HOH 102 356 356 HOH HOH A . I 4 HOH 103 358 358 HOH HOH A . I 4 HOH 104 360 360 HOH HOH A . I 4 HOH 105 365 365 HOH HOH A . I 4 HOH 106 372 372 HOH HOH A . I 4 HOH 107 373 373 HOH HOH A . I 4 HOH 108 389 389 HOH HOH A . I 4 HOH 109 400 400 HOH HOH A . I 4 HOH 110 405 405 HOH HOH A . I 4 HOH 111 426 426 HOH HOH A . I 4 HOH 112 427 427 HOH HOH A . I 4 HOH 113 429 429 HOH HOH A . I 4 HOH 114 430 430 HOH HOH A . I 4 HOH 115 431 431 HOH HOH A . I 4 HOH 116 435 435 HOH HOH A . I 4 HOH 117 437 437 HOH HOH A . J 4 HOH 1 109 109 HOH HOH B . J 4 HOH 2 110 110 HOH HOH B . J 4 HOH 3 111 111 HOH HOH B . J 4 HOH 4 112 112 HOH HOH B . J 4 HOH 5 114 114 HOH HOH B . J 4 HOH 6 115 115 HOH HOH B . J 4 HOH 7 120 120 HOH HOH B . J 4 HOH 8 121 121 HOH HOH B . J 4 HOH 9 122 122 HOH HOH B . J 4 HOH 10 123 123 HOH HOH B . J 4 HOH 11 124 124 HOH HOH B . J 4 HOH 12 125 125 HOH HOH B . J 4 HOH 13 126 126 HOH HOH B . J 4 HOH 14 127 127 HOH HOH B . J 4 HOH 15 129 129 HOH HOH B . J 4 HOH 16 131 131 HOH HOH B . J 4 HOH 17 132 132 HOH HOH B . J 4 HOH 18 133 133 HOH HOH B . J 4 HOH 19 134 134 HOH HOH B . J 4 HOH 20 135 135 HOH HOH B . J 4 HOH 21 136 136 HOH HOH B . J 4 HOH 22 137 137 HOH HOH B . J 4 HOH 23 139 139 HOH HOH B . J 4 HOH 24 141 141 HOH HOH B . J 4 HOH 25 142 142 HOH HOH B . J 4 HOH 26 145 145 HOH HOH B . J 4 HOH 27 146 146 HOH HOH B . J 4 HOH 28 147 147 HOH HOH B . J 4 HOH 29 148 148 HOH HOH B . J 4 HOH 30 151 151 HOH HOH B . J 4 HOH 31 153 153 HOH HOH B . J 4 HOH 32 155 155 HOH HOH B . J 4 HOH 33 158 158 HOH HOH B . J 4 HOH 34 160 160 HOH HOH B . J 4 HOH 35 163 163 HOH HOH B . J 4 HOH 36 165 165 HOH HOH B . J 4 HOH 37 166 166 HOH HOH B . J 4 HOH 38 167 167 HOH HOH B . J 4 HOH 39 170 170 HOH HOH B . J 4 HOH 40 171 171 HOH HOH B . J 4 HOH 41 172 172 HOH HOH B . J 4 HOH 42 173 173 HOH HOH B . J 4 HOH 43 174 174 HOH HOH B . J 4 HOH 44 175 175 HOH HOH B . J 4 HOH 45 177 177 HOH HOH B . J 4 HOH 46 179 179 HOH HOH B . J 4 HOH 47 180 180 HOH HOH B . J 4 HOH 48 184 184 HOH HOH B . J 4 HOH 49 185 185 HOH HOH B . J 4 HOH 50 187 187 HOH HOH B . J 4 HOH 51 188 188 HOH HOH B . J 4 HOH 52 194 194 HOH HOH B . J 4 HOH 53 197 197 HOH HOH B . J 4 HOH 54 199 199 HOH HOH B . J 4 HOH 55 200 200 HOH HOH B . J 4 HOH 56 201 201 HOH HOH B . J 4 HOH 57 206 206 HOH HOH B . J 4 HOH 58 208 208 HOH HOH B . J 4 HOH 59 210 210 HOH HOH B . J 4 HOH 60 211 211 HOH HOH B . J 4 HOH 61 212 212 HOH HOH B . J 4 HOH 62 214 214 HOH HOH B . J 4 HOH 63 219 219 HOH HOH B . J 4 HOH 64 220 220 HOH HOH B . J 4 HOH 65 221 221 HOH HOH B . J 4 HOH 66 222 222 HOH HOH B . J 4 HOH 67 224 224 HOH HOH B . J 4 HOH 68 226 226 HOH HOH B . J 4 HOH 69 228 228 HOH HOH B . J 4 HOH 70 231 231 HOH HOH B . J 4 HOH 71 233 233 HOH HOH B . J 4 HOH 72 234 234 HOH HOH B . J 4 HOH 73 236 236 HOH HOH B . J 4 HOH 74 237 237 HOH HOH B . J 4 HOH 75 240 240 HOH HOH B . J 4 HOH 76 241 241 HOH HOH B . J 4 HOH 77 245 245 HOH HOH B . J 4 HOH 78 246 246 HOH HOH B . J 4 HOH 79 247 247 HOH HOH B . J 4 HOH 80 248 248 HOH HOH B . J 4 HOH 81 250 250 HOH HOH B . J 4 HOH 82 252 252 HOH HOH B . J 4 HOH 83 253 253 HOH HOH B . J 4 HOH 84 255 255 HOH HOH B . J 4 HOH 85 256 256 HOH HOH B . J 4 HOH 86 258 258 HOH HOH B . J 4 HOH 87 259 259 HOH HOH B . J 4 HOH 88 260 260 HOH HOH B . J 4 HOH 89 265 265 HOH HOH B . J 4 HOH 90 267 267 HOH HOH B . J 4 HOH 91 268 268 HOH HOH B . J 4 HOH 92 273 273 HOH HOH B . J 4 HOH 93 275 275 HOH HOH B . J 4 HOH 94 277 277 HOH HOH B . J 4 HOH 95 279 279 HOH HOH B . J 4 HOH 96 281 281 HOH HOH B . J 4 HOH 97 282 282 HOH HOH B . J 4 HOH 98 288 288 HOH HOH B . J 4 HOH 99 294 294 HOH HOH B . J 4 HOH 100 296 296 HOH HOH B . J 4 HOH 101 297 297 HOH HOH B . J 4 HOH 102 298 298 HOH HOH B . J 4 HOH 103 299 299 HOH HOH B . J 4 HOH 104 301 301 HOH HOH B . J 4 HOH 105 302 302 HOH HOH B . J 4 HOH 106 303 303 HOH HOH B . J 4 HOH 107 305 305 HOH HOH B . J 4 HOH 108 309 309 HOH HOH B . J 4 HOH 109 310 310 HOH HOH B . J 4 HOH 110 314 314 HOH HOH B . J 4 HOH 111 319 319 HOH HOH B . J 4 HOH 112 320 320 HOH HOH B . J 4 HOH 113 321 321 HOH HOH B . J 4 HOH 114 326 326 HOH HOH B . J 4 HOH 115 329 329 HOH HOH B . J 4 HOH 116 330 330 HOH HOH B . J 4 HOH 117 333 333 HOH HOH B . J 4 HOH 118 334 334 HOH HOH B . J 4 HOH 119 335 335 HOH HOH B . J 4 HOH 120 337 337 HOH HOH B . J 4 HOH 121 338 338 HOH HOH B . J 4 HOH 122 339 339 HOH HOH B . J 4 HOH 123 341 341 HOH HOH B . J 4 HOH 124 344 344 HOH HOH B . J 4 HOH 125 346 346 HOH HOH B . J 4 HOH 126 348 348 HOH HOH B . J 4 HOH 127 352 352 HOH HOH B . J 4 HOH 128 359 359 HOH HOH B . J 4 HOH 129 367 367 HOH HOH B . J 4 HOH 130 374 374 HOH HOH B . J 4 HOH 131 380 380 HOH HOH B . J 4 HOH 132 393 393 HOH HOH B . J 4 HOH 133 397 397 HOH HOH B . J 4 HOH 134 401 401 HOH HOH B . J 4 HOH 135 402 402 HOH HOH B . J 4 HOH 136 428 428 HOH HOH B . J 4 HOH 137 432 432 HOH HOH B . J 4 HOH 138 433 433 HOH HOH B . J 4 HOH 139 434 434 HOH HOH B . J 4 HOH 140 436 436 HOH HOH B . J 4 HOH 141 438 438 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 REFMAC refinement 5.2.0019 ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 SHELX phasing . ? 5 # _cell.entry_id 3I5L _cell.length_a 22.500 _cell.length_b 25.140 _cell.length_c 29.090 _cell.angle_alpha 66.53 _cell.angle_beta 79.28 _cell.angle_gamma 79.57 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3I5L _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3I5L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 47.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;21% 2-methyl-2,4-pentanediol (MPD), 35 mM calcium acetate, 10 mM Tris pH 7.5 equilibrated in sitting drops against a reservoir of 35% MPD at 4 C. , VAPOR DIFFUSION, SITTING DROP, temperature 277.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 3I5L _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 26.472 _reflns.d_resolution_high 1.175 _reflns.number_obs 19011 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.124 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.175 _reflns_shell.d_res_low 1.205 _reflns_shell.percent_possible_all 90.16 _reflns_shell.Rmerge_I_obs 0.154 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.9 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3I5L _refine.ls_number_reflns_obs 16139 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.47 _refine.ls_d_res_high 1.18 _refine.ls_percent_reflns_obs 94.55 _refine.ls_R_factor_obs 0.10300 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.09902 _refine.ls_R_factor_R_free 0.13764 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 1835 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.B_iso_mean 5.679 _refine.aniso_B[1][1] 0.03 _refine.aniso_B[2][2] -0.05 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.04 _refine.solvent_model_details 'BABINET MODEL PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.037 _refine.pdbx_overall_ESU_R_Free 0.038 _refine.overall_SU_ML 0.018 _refine.overall_SU_B 0.816 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 441 _refine_hist.pdbx_number_atoms_ligand 92 _refine_hist.number_atoms_solvent 262 _refine_hist.number_atoms_total 795 _refine_hist.d_res_high 1.18 _refine_hist.d_res_low 26.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.021 ? 587 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 232 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.565 3.000 ? 896 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.481 3.000 ? 576 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.121 0.200 ? 85 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.037 0.020 ? 364 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.020 0.020 ? 84 'X-RAY DIFFRACTION' ? r_nbd_refined 0.238 0.200 ? 107 'X-RAY DIFFRACTION' ? r_nbd_other 0.272 0.200 ? 362 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.238 0.200 ? 209 'X-RAY DIFFRACTION' ? r_nbtor_other 0.089 0.200 ? 117 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.376 0.200 ? 206 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.082 0.200 ? 20 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.141 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.150 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.364 0.200 ? 86 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.082 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.668 1.500 ? 5 'X-RAY DIFFRACTION' ? r_mcbond_other 1.285 1.500 ? 3 'X-RAY DIFFRACTION' ? r_mcangle_it 2.020 2.000 ? 7 'X-RAY DIFFRACTION' ? r_scbond_it 2.163 3.000 ? 826 'X-RAY DIFFRACTION' ? r_scangle_it 2.604 4.500 ? 889 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.725 3.000 ? 1274 'X-RAY DIFFRACTION' ? r_sphericity_free 12.406 3.000 ? 268 'X-RAY DIFFRACTION' ? r_sphericity_bonded 5.225 3.000 ? 759 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.175 _refine_ls_shell.d_res_low 1.205 _refine_ls_shell.number_reflns_R_work 1138 _refine_ls_shell.R_factor_R_work 0.087 _refine_ls_shell.percent_reflns_obs 90.16 _refine_ls_shell.R_factor_R_free 0.149 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 126 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3I5L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3I5L _struct.title 'Allosteric Modulation of DNA by Small Molecules' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I5L _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Cyclic Polyamide, DNA Binder, Minor Groove Binder, PyIm Polyamide, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 4 ? J N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3I5L _struct_ref.pdbx_db_accession 3I5L _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code CCAGGCCTGG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3I5L A 1 ? 10 ? 3I5L 1 ? 10 ? 1 10 2 1 3I5L B 1 ? 10 ? 3I5L 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3270 ? 1 MORE -14 ? 1 'SSA (A^2)' 3380 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 5 "O3'" ? ? ? 1_555 A C38 6 P ? ? A DG 5 A C38 6 1_555 ? ? ? ? ? ? ? 1.575 ? ? covale2 covale one ? A C38 6 "O3'" ? ? ? 1_555 A DC 7 P ? ? A C38 6 A DC 7 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? B DG 5 "O3'" ? ? ? 1_555 B C38 6 P ? ? B DG 5 B C38 6 1_555 ? ? ? ? ? ? ? 1.567 ? ? covale4 covale one ? B C38 6 "O3'" ? ? ? 1_555 B DC 7 P ? ? B C38 6 B DC 7 1_555 ? ? ? ? ? ? ? 1.602 ? ? metalc1 metalc ? ? A DG 10 O6 ? ? ? 1_555 C CA . CA ? ? A DG 10 A CA 601 1_555 ? ? ? ? ? ? ? 2.475 ? ? metalc2 metalc ? ? I HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 116 A CA 601 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc3 metalc ? ? I HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 117 A CA 601 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc4 metalc ? ? I HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 191 A CA 601 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc5 metalc ? ? I HOH . O ? ? ? 1_555 C CA . CA ? ? A HOH 427 A CA 601 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 601 B HOH 137 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc7 metalc ? ? B DA 3 OP1 ? ? ? 1_555 F CA . CA ? ? B DA 3 B CA 603 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc8 metalc ? ? B DT 8 OP2 ? ? ? 1_555 E CA . CA ? ? B DT 8 B CA 602 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc9 metalc ? ? B DT 8 OP1 ? ? ? 1_555 H CA . CA ? ? B DT 8 B CA 605 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc10 metalc ? ? J HOH . O ? ? ? 1_555 F CA . CA ? ? B HOH 110 B CA 603 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc11 metalc ? ? J HOH . O ? ? ? 1_555 E CA . CA ? ? B HOH 114 B CA 602 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc12 metalc ? ? J HOH . O ? ? ? 1_555 F CA . CA ? ? B HOH 115 B CA 603 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc13 metalc ? ? J HOH . O ? ? ? 1_555 E CA . CA ? ? B HOH 120 B CA 602 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc14 metalc ? ? J HOH . O ? ? ? 1_555 F CA . CA ? ? B HOH 125 B CA 603 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc15 metalc ? ? J HOH . O ? ? ? 1_555 H CA . CA ? ? B HOH 126 B CA 605 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc16 metalc ? ? J HOH . O ? ? ? 1_555 F CA . CA ? ? B HOH 129 B CA 603 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc17 metalc ? ? J HOH . O ? ? ? 1_555 F CA . CA ? ? B HOH 135 B CA 603 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc18 metalc ? ? J HOH . O ? ? ? 1_555 F CA . CA ? ? B HOH 139 B CA 603 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc19 metalc ? ? J HOH . O ? ? ? 1_555 E CA . CA ? ? B HOH 141 B CA 602 1_555 ? ? ? ? ? ? ? 2.248 ? ? metalc20 metalc ? ? J HOH . O ? ? ? 1_555 G CA . CA A ? B HOH 160 B CA 604 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc21 metalc ? ? J HOH . O ? ? ? 1_555 G CA . CA B ? B HOH 160 B CA 604 1_555 ? ? ? ? ? ? ? 2.675 ? ? metalc22 metalc ? ? J HOH . O ? ? ? 1_555 E CA . CA ? ? B HOH 166 B CA 602 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc23 metalc ? ? J HOH . O ? ? ? 1_555 H CA . CA ? ? B HOH 173 B CA 605 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc24 metalc ? ? J HOH . O ? ? ? 1_555 H CA . CA ? ? B HOH 206 B CA 605 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc25 metalc ? ? J HOH . O ? ? ? 1_555 H CA . CA ? ? B HOH 212 B CA 605 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc26 metalc ? ? J HOH . O ? ? ? 1_555 H CA . CA ? ? B HOH 221 B CA 605 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc27 metalc ? ? J HOH . O ? ? ? 1_555 G CA . CA A ? B HOH 231 B CA 604 1_555 ? ? ? ? ? ? ? 2.982 ? ? metalc28 metalc ? ? J HOH . O ? ? ? 1_555 G CA . CA A ? B HOH 334 B CA 604 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc29 metalc ? ? J HOH . O ? ? ? 1_555 G CA . CA B ? B HOH 334 B CA 604 1_555 ? ? ? ? ? ? ? 2.687 ? ? metalc30 metalc ? ? D 1P1 . O2 ? ? ? 1_555 G CA . CA A ? B 1P1 500 B CA 604 1_555 ? ? ? ? ? ? ? 2.827 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B C38 6 N3 ? ? A DG 5 B C38 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B C38 6 O2 ? ? A DG 5 B C38 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B C38 6 N4 ? ? A DG 5 B C38 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C38 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A C38 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C38 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A C38 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C38 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A C38 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 A ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 A ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 A ? A DG 9 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 A ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 A ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 A ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 10 ? A DG 10 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 116 ? 1_555 123.9 ? 2 O6 ? A DG 10 ? A DG 10 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 117 ? 1_555 83.7 ? 3 O ? I HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 117 ? 1_555 81.5 ? 4 O6 ? A DG 10 ? A DG 10 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 191 ? 1_555 154.7 ? 5 O ? I HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 191 ? 1_555 75.2 ? 6 O ? I HOH . ? A HOH 117 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 191 ? 1_555 83.3 ? 7 O6 ? A DG 10 ? A DG 10 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 427 ? 1_555 77.7 ? 8 O ? I HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 427 ? 1_555 150.8 ? 9 O ? I HOH . ? A HOH 117 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 427 ? 1_555 82.0 ? 10 O ? I HOH . ? A HOH 191 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? I HOH . ? A HOH 427 ? 1_555 79.1 ? 11 O6 ? A DG 10 ? A DG 10 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? J HOH . ? B HOH 137 ? 1_555 106.3 ? 12 O ? I HOH . ? A HOH 116 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? J HOH . ? B HOH 137 ? 1_555 108.6 ? 13 O ? I HOH . ? A HOH 117 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? J HOH . ? B HOH 137 ? 1_555 156.2 ? 14 O ? I HOH . ? A HOH 191 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? J HOH . ? B HOH 137 ? 1_555 78.9 ? 15 O ? I HOH . ? A HOH 427 ? 1_555 CA ? C CA . ? A CA 601 ? 1_555 O ? J HOH . ? B HOH 137 ? 1_555 79.3 ? 16 OP1 ? B DA 3 ? B DA 3 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 110 ? 1_555 77.2 ? 17 OP1 ? B DA 3 ? B DA 3 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 115 ? 1_555 128.0 ? 18 O ? J HOH . ? B HOH 110 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 115 ? 1_555 74.1 ? 19 OP1 ? B DA 3 ? B DA 3 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 125 ? 1_555 75.1 ? 20 O ? J HOH . ? B HOH 110 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 125 ? 1_555 104.5 ? 21 O ? J HOH . ? B HOH 115 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 125 ? 1_555 71.3 ? 22 OP1 ? B DA 3 ? B DA 3 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 129 ? 1_555 77.7 ? 23 O ? J HOH . ? B HOH 110 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 129 ? 1_555 146.7 ? 24 O ? J HOH . ? B HOH 115 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 129 ? 1_555 139.1 ? 25 O ? J HOH . ? B HOH 125 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 129 ? 1_555 89.7 ? 26 OP1 ? B DA 3 ? B DA 3 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 135 ? 1_555 154.8 ? 27 O ? J HOH . ? B HOH 110 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 135 ? 1_555 125.0 ? 28 O ? J HOH . ? B HOH 115 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 135 ? 1_555 74.2 ? 29 O ? J HOH . ? B HOH 125 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 135 ? 1_555 106.4 ? 30 O ? J HOH . ? B HOH 129 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 135 ? 1_555 77.2 ? 31 OP1 ? B DA 3 ? B DA 3 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 93.7 ? 32 O ? J HOH . ? B HOH 110 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 77.3 ? 33 O ? J HOH . ? B HOH 115 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 120.3 ? 34 O ? J HOH . ? B HOH 125 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 167.8 ? 35 O ? J HOH . ? B HOH 129 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 83.0 ? 36 O ? J HOH . ? B HOH 135 ? 1_555 CA ? F CA . ? B CA 603 ? 1_555 O ? J HOH . ? B HOH 139 ? 1_555 81.5 ? 37 OP2 ? B DT 8 ? B DT 8 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 114 ? 1_555 88.7 ? 38 OP2 ? B DT 8 ? B DT 8 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 120 ? 1_555 89.7 ? 39 O ? J HOH . ? B HOH 114 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 120 ? 1_555 159.8 ? 40 OP2 ? B DT 8 ? B DT 8 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 141 ? 1_555 85.9 ? 41 O ? J HOH . ? B HOH 114 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 141 ? 1_555 91.1 ? 42 O ? J HOH . ? B HOH 120 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 141 ? 1_555 108.8 ? 43 OP2 ? B DT 8 ? B DT 8 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 166 ? 1_555 93.0 ? 44 O ? J HOH . ? B HOH 114 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 166 ? 1_555 79.0 ? 45 O ? J HOH . ? B HOH 120 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 166 ? 1_555 80.9 ? 46 O ? J HOH . ? B HOH 141 ? 1_555 CA ? E CA . ? B CA 602 ? 1_555 O ? J HOH . ? B HOH 166 ? 1_555 170.2 ? 47 OP1 ? B DT 8 ? B DT 8 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 126 ? 1_555 85.5 ? 48 OP1 ? B DT 8 ? B DT 8 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 173 ? 1_555 78.9 ? 49 O ? J HOH . ? B HOH 126 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 173 ? 1_555 104.7 ? 50 OP1 ? B DT 8 ? B DT 8 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 143.7 ? 51 O ? J HOH . ? B HOH 126 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 80.6 ? 52 O ? J HOH . ? B HOH 173 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 137.1 ? 53 OP1 ? B DT 8 ? B DT 8 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 106.8 ? 54 O ? J HOH . ? B HOH 126 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 165.8 ? 55 O ? J HOH . ? B HOH 173 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 85.0 ? 56 O ? J HOH . ? B HOH 206 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 212 ? 1_555 85.3 ? 57 OP1 ? B DT 8 ? B DT 8 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_555 71.5 ? 58 O ? J HOH . ? B HOH 126 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_555 105.5 ? 59 O ? J HOH . ? B HOH 173 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_555 135.3 ? 60 O ? J HOH . ? B HOH 206 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_555 80.2 ? 61 O ? J HOH . ? B HOH 212 ? 1_555 CA ? H CA . ? B CA 605 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_555 72.8 ? 62 O ? J HOH . ? B HOH 160 ? 1_555 CA A G CA . ? B CA 604 ? 1_555 O ? J HOH . ? B HOH 231 ? 1_555 111.8 ? 63 O ? J HOH . ? B HOH 160 ? 1_555 CA A G CA . ? B CA 604 ? 1_555 O ? J HOH . ? B HOH 334 ? 1_555 149.1 ? 64 O ? J HOH . ? B HOH 231 ? 1_555 CA A G CA . ? B CA 604 ? 1_555 O ? J HOH . ? B HOH 334 ? 1_555 93.3 ? 65 O ? J HOH . ? B HOH 160 ? 1_555 CA A G CA . ? B CA 604 ? 1_555 O2 ? D 1P1 . ? B 1P1 500 ? 1_555 129.2 ? 66 O ? J HOH . ? B HOH 231 ? 1_555 CA A G CA . ? B CA 604 ? 1_555 O2 ? D 1P1 . ? B 1P1 500 ? 1_555 95.4 ? 67 O ? J HOH . ? B HOH 334 ? 1_555 CA A G CA . ? B CA 604 ? 1_555 O2 ? D 1P1 . ? B 1P1 500 ? 1_555 62.0 ? 68 O ? J HOH . ? B HOH 160 ? 1_555 CA B G CA . ? B CA 604 ? 1_555 O ? J HOH . ? B HOH 334 ? 1_555 131.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B 1P1 500 ? 18 'BINDING SITE FOR RESIDUE 1P1 B 500' AC2 Software A CA 601 ? 2 'BINDING SITE FOR RESIDUE CA A 601' AC3 Software B CA 602 ? 2 'BINDING SITE FOR RESIDUE CA B 602' AC4 Software B CA 603 ? 1 'BINDING SITE FOR RESIDUE CA B 603' AC5 Software B CA 604 ? 3 'BINDING SITE FOR RESIDUE CA B 604' AC6 Software B CA 605 ? 1 'BINDING SITE FOR RESIDUE CA B 605' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 DA A 3 ? DA A 3 . ? 1_555 ? 2 AC1 18 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 18 DG A 5 ? DG A 5 . ? 1_555 ? 4 AC1 18 C38 A 6 ? C38 A 6 . ? 1_555 ? 5 AC1 18 DC A 7 ? DC A 7 . ? 1_555 ? 6 AC1 18 DT A 8 ? DT A 8 . ? 1_555 ? 7 AC1 18 DG A 9 ? DG A 9 . ? 1_555 ? 8 AC1 18 DG A 10 ? DG A 10 . ? 1_554 ? 9 AC1 18 DC B 1 ? DC B 1 . ? 1_655 ? 10 AC1 18 DA B 3 ? DA B 3 . ? 1_555 ? 11 AC1 18 DG B 4 ? DG B 4 . ? 1_555 ? 12 AC1 18 DG B 5 ? DG B 5 . ? 1_555 ? 13 AC1 18 C38 B 6 ? C38 B 6 . ? 1_555 ? 14 AC1 18 DC B 7 ? DC B 7 . ? 1_555 ? 15 AC1 18 DT B 8 ? DT B 8 . ? 1_555 ? 16 AC1 18 DG B 9 ? DG B 9 . ? 1_555 ? 17 AC1 18 DG B 10 ? DG B 10 . ? 1_556 ? 18 AC1 18 CA G . ? CA B 604 . ? 1_555 ? 19 AC2 2 DG A 10 ? DG A 10 . ? 1_555 ? 20 AC2 2 DG B 10 ? DG B 10 . ? 1_456 ? 21 AC3 2 DA B 3 ? DA B 3 . ? 1_645 ? 22 AC3 2 DT B 8 ? DT B 8 . ? 1_555 ? 23 AC4 1 DA B 3 ? DA B 3 . ? 1_555 ? 24 AC5 3 DC B 2 ? DC B 2 . ? 1_645 ? 25 AC5 3 DC B 7 ? DC B 7 . ? 1_555 ? 26 AC5 3 1P1 D . ? 1P1 B 500 . ? 1_555 ? 27 AC6 1 DT B 8 ? DT B 8 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 200 ? ? O B HOH 393 ? ? 1.22 2 1 O A HOH 227 ? ? O A HOH 389 ? ? 1.38 3 1 O A HOH 251 ? ? O A HOH 431 ? ? 1.57 4 1 O A HOH 162 ? ? O A HOH 400 ? ? 1.68 5 1 O A HOH 351 ? ? O B HOH 329 ? ? 1.69 6 1 "O3'" B DG 4 ? ? O B HOH 346 ? ? 1.71 7 1 O B HOH 185 ? ? O B HOH 434 ? ? 1.73 8 1 O A HOH 249 ? ? O A HOH 373 ? ? 1.79 9 1 O A HOH 323 ? ? O A HOH 405 ? ? 1.80 10 1 O B HOH 175 ? ? O B HOH 397 ? ? 1.91 11 1 O A HOH 198 ? ? O A HOH 351 ? ? 1.93 12 1 I B C38 6 ? ? O A HOH 405 ? ? 1.94 13 1 OP1 B DG 5 ? ? O B HOH 346 ? ? 1.99 14 1 O B HOH 277 ? ? O B HOH 402 ? ? 2.03 15 1 O B HOH 275 ? ? O B HOH 339 ? ? 2.04 16 1 O B HOH 136 ? ? O B HOH 401 ? ? 2.04 17 1 O B HOH 177 ? ? O B HOH 346 ? ? 2.05 18 1 O A HOH 292 ? ? O B HOH 337 ? ? 2.06 19 1 O A HOH 143 ? ? O A HOH 332 ? ? 2.08 20 1 O A HOH 193 ? ? O B HOH 380 ? ? 2.09 21 1 O A HOH 244 ? ? O B HOH 303 ? ? 2.14 22 1 O A HOH 193 ? ? O A HOH 198 ? ? 2.16 23 1 O B HOH 265 ? ? O B HOH 309 ? ? 2.18 24 1 O A HOH 257 ? ? O A HOH 316 ? ? 2.18 25 1 O B HOH 171 ? ? O B HOH 348 ? ? 2.18 26 1 O A HOH 182 ? ? O A HOH 316 ? ? 2.18 27 1 O B HOH 330 ? ? O B HOH 401 ? ? 2.19 28 1 P B DG 5 ? ? O B HOH 346 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 168 ? ? 1_555 O A HOH 358 ? ? 1_564 1.59 2 1 O A HOH 280 ? ? 1_555 O A HOH 431 ? ? 1_556 1.67 3 1 O A HOH 325 ? ? 1_555 O B HOH 339 ? ? 1_556 1.77 4 1 O A HOH 325 ? ? 1_555 O B HOH 432 ? ? 1_556 1.78 5 1 O B HOH 240 ? ? 1_555 O B HOH 302 ? ? 1_456 1.84 6 1 O B HOH 222 ? ? 1_555 O B HOH 359 ? ? 1_455 1.89 7 1 O A HOH 350 ? ? 1_555 O A HOH 358 ? ? 1_564 2.04 8 1 O A HOH 373 ? ? 1_555 O B HOH 175 ? ? 1_556 2.09 9 1 O A HOH 430 ? ? 1_555 O B HOH 175 ? ? 1_556 2.09 10 1 O A HOH 291 ? ? 1_555 O B HOH 433 ? ? 1_556 2.09 11 1 O B HOH 236 ? ? 1_555 O B HOH 240 ? ? 1_654 2.13 12 1 O B HOH 258 ? ? 1_555 O B HOH 305 ? ? 1_465 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 A DC 2 ? ? C4 A DC 2 ? ? 1.387 1.335 0.052 0.007 N 2 1 N7 A DA 3 ? ? C8 A DA 3 ? ? 1.268 1.311 -0.043 0.007 N 3 1 C4 A DG 5 ? ? C5 A DG 5 ? ? 1.330 1.379 -0.049 0.007 N 4 1 "C2'" B DC 1 ? A "C1'" B DC 1 ? A 1.457 1.518 -0.061 0.010 N 5 1 C4 B DC 7 ? ? N4 B DC 7 ? ? 1.277 1.335 -0.058 0.009 N 6 1 C5 B DT 8 ? ? C7 B DT 8 ? ? 1.543 1.496 0.047 0.006 N 7 1 C5 B DG 9 ? ? N7 B DG 9 ? ? 1.429 1.388 0.041 0.006 N 8 1 "O5'" B DG 10 ? ? "C5'" B DG 10 ? ? 1.564 1.440 0.124 0.016 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? 111.06 106.00 5.06 0.60 N 2 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 109.52 113.10 -3.58 0.50 N 3 1 N3 A DG 5 ? ? C4 A DG 5 ? ? N9 A DG 5 ? ? 122.37 126.00 -3.63 0.60 N 4 1 C4 A DC 7 ? ? C5 A DC 7 ? ? C6 A DC 7 ? ? 121.40 117.40 4.00 0.50 N 5 1 C5 A DC 7 ? ? C6 A DC 7 ? ? N1 A DC 7 ? ? 117.98 121.00 -3.02 0.50 N 6 1 "O4'" B DC 1 ? A "C1'" B DC 1 ? A "C2'" B DC 1 ? A 109.86 106.80 3.06 0.50 N 7 1 N3 B DC 1 ? B C4 B DC 1 ? B N4 B DC 1 ? B 122.61 118.00 4.61 0.70 N 8 1 "C3'" B DC 2 ? A "O3'" B DC 2 ? A P B DA 3 ? ? 127.75 119.70 8.05 1.20 Y 9 1 C2 B DG 4 ? ? N3 B DG 4 ? ? C4 B DG 4 ? ? 114.92 111.90 3.02 0.50 N 10 1 C5 B DG 5 ? ? C6 B DG 5 ? ? N1 B DG 5 ? ? 114.80 111.50 3.30 0.50 N 11 1 C5 B DG 5 ? ? C6 B DG 5 ? ? O6 B DG 5 ? ? 124.75 128.60 -3.85 0.60 N 12 1 N3 B DG 9 ? ? C4 B DG 9 ? ? C5 B DG 9 ? ? 124.47 128.60 -4.13 0.50 N 13 1 C4 B DG 9 ? ? C5 B DG 9 ? ? N7 B DG 9 ? ? 108.23 110.80 -2.57 0.40 N 14 1 N9 B DG 9 ? ? C4 B DG 9 ? ? C5 B DG 9 ? ? 107.83 105.40 2.43 0.40 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 5 ? ? 0.068 'SIDE CHAIN' 2 1 DC B 1 ? A 0.063 'SIDE CHAIN' 3 1 DG B 5 ? ? 0.070 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A C38 6 A C38 6 ? DC ? 2 B C38 6 B C38 6 ? DC ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'Minor groove binder' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1P1 C C N N 1 1P1 N N N N 2 1P1 O O N N 3 1P1 C1 C Y N 4 1P1 N1 N Y N 5 1P1 O1 O N N 6 1P1 C2 C Y N 7 1P1 N2 N N N 8 1P1 O2 O N N 9 1P1 C3 C Y N 10 1P1 N3 N Y N 11 1P1 O3 O N N 12 1P1 C4 C N N 13 1P1 N4 N N N 14 1P1 O4 O N N 15 1P1 C5 C Y N 16 1P1 N5 N Y N 17 1P1 O5 O N N 18 1P1 C6 C N N 19 1P1 N6 N Y N 20 1P1 O6 O N N 21 1P1 C7 C Y N 22 1P1 N7 N N N 23 1P1 O7 O N N 24 1P1 C8 C Y N 25 1P1 N8 N Y N 26 1P1 O8 O N N 27 1P1 C9 C N N 28 1P1 N9 N Y N 29 1P1 O9 O N N 30 1P1 C10 C Y N 31 1P1 N10 N N N 32 1P1 C11 C Y N 33 1P1 N11 N N N 34 1P1 C12 C N N 35 1P1 N12 N N N 36 1P1 C13 C Y N 37 1P1 N13 N Y N 38 1P1 C14 C Y N 39 1P1 N14 N N N 40 1P1 C15 C N N 41 1P1 N15 N Y N 42 1P1 C16 C Y N 43 1P1 N16 N N N 44 1P1 C17 C N N 45 1P1 N17 N Y N 46 1P1 C18 C Y N 47 1P1 N18 N Y N 48 1P1 C19 C Y N 49 1P1 N19 N N N 50 1P1 C20 C Y N 51 1P1 N20 N Y N 52 1P1 C21 C N N 53 1P1 N21 N Y N 54 1P1 C22 C N N 55 1P1 N22 N N N 56 1P1 C23 C N R 57 1P1 N23 N N N 58 1P1 C24 C N N 59 1P1 C25 C N N 60 1P1 C26 C N N 61 1P1 C27 C Y N 62 1P1 C28 C Y N 63 1P1 C29 C Y N 64 1P1 C30 C N N 65 1P1 C31 C Y N 66 1P1 C32 C N N 67 1P1 C33 C Y N 68 1P1 C34 C Y N 69 1P1 C35 C Y N 70 1P1 C36 C N N 71 1P1 C37 C Y N 72 1P1 C38 C N N 73 1P1 C39 C Y N 74 1P1 C40 C Y N 75 1P1 C41 C N N 76 1P1 C42 C Y N 77 1P1 C43 C N N 78 1P1 C44 C Y N 79 1P1 C45 C Y N 80 1P1 C46 C Y N 81 1P1 C47 C N N 82 1P1 C48 C N N 83 1P1 C49 C N R 84 1P1 C50 C N N 85 1P1 C51 C N N 86 1P1 HN H N N 87 1P1 H2 H N N 88 1P1 HN2 H N N 89 1P1 H3 H N N 90 1P1 H4 H N N 91 1P1 H4A H N N 92 1P1 H4B H N N 93 1P1 HN4 H N N 94 1P1 HN7 H N N 95 1P1 H8 H N N 96 1P1 H9 H N N 97 1P1 H9A H N N 98 1P1 H9B H N N 99 1P1 HN10 H N N 100 1P1 H11 H N N 101 1P1 HN11 H N N 102 1P1 HN1A H N N 103 1P1 HN12 H N N 104 1P1 H14 H N N 105 1P1 HN14 H N N 106 1P1 H15 H N N 107 1P1 H15A H N N 108 1P1 H15B H N N 109 1P1 HN16 H N N 110 1P1 HN19 H N N 111 1P1 H20 H N N 112 1P1 H21 H N N 113 1P1 H21A H N N 114 1P1 H21B H N N 115 1P1 HN22 H N N 116 1P1 H23 H N N 117 1P1 HN23 H N N 118 1P1 HN2A H N N 119 1P1 H24 H N N 120 1P1 H24A H N N 121 1P1 H25 H N N 122 1P1 H25A H N N 123 1P1 H28 H N N 124 1P1 H29 H N N 125 1P1 H30 H N N 126 1P1 H30A H N N 127 1P1 H30B H N N 128 1P1 H33 H N N 129 1P1 H35 H N N 130 1P1 H36 H N N 131 1P1 H36A H N N 132 1P1 H36B H N N 133 1P1 H40 H N N 134 1P1 H41 H N N 135 1P1 H41A H N N 136 1P1 H41B H N N 137 1P1 H46 H N N 138 1P1 H47 H N N 139 1P1 H47A H N N 140 1P1 H47B H N N 141 1P1 H49 H N N 142 1P1 H50 H N N 143 1P1 H50A H N N 144 1P1 H51 H N N 145 1P1 H51A H N N 146 C38 O3P O N N 147 C38 P P N N 148 C38 O1P O N N 149 C38 O2P O N N 150 C38 "O5'" O N N 151 C38 "C5'" C N N 152 C38 "C4'" C N R 153 C38 "O4'" O N N 154 C38 "C3'" C N S 155 C38 "O3'" O N N 156 C38 "C2'" C N N 157 C38 "C1'" C N R 158 C38 N1 N N N 159 C38 C2 C N N 160 C38 O2 O N N 161 C38 N3 N N N 162 C38 C4 C N N 163 C38 N4 N N N 164 C38 C5 C N N 165 C38 C6 C N N 166 C38 I I N N 167 C38 H3P H N N 168 C38 H2P H N N 169 C38 "H5'1" H N N 170 C38 "H5'2" H N N 171 C38 "H4'" H N N 172 C38 "H3'" H N N 173 C38 HA H N N 174 C38 "H2'1" H N N 175 C38 "H2'2" H N N 176 C38 "H1'" H N N 177 C38 H4N1 H N N 178 C38 H4N2 H N N 179 C38 H6 H N N 180 CA CA CA N N 181 DA OP3 O N N 182 DA P P N N 183 DA OP1 O N N 184 DA OP2 O N N 185 DA "O5'" O N N 186 DA "C5'" C N N 187 DA "C4'" C N R 188 DA "O4'" O N N 189 DA "C3'" C N S 190 DA "O3'" O N N 191 DA "C2'" C N N 192 DA "C1'" C N R 193 DA N9 N Y N 194 DA C8 C Y N 195 DA N7 N Y N 196 DA C5 C Y N 197 DA C6 C Y N 198 DA N6 N N N 199 DA N1 N Y N 200 DA C2 C Y N 201 DA N3 N Y N 202 DA C4 C Y N 203 DA HOP3 H N N 204 DA HOP2 H N N 205 DA "H5'" H N N 206 DA "H5''" H N N 207 DA "H4'" H N N 208 DA "H3'" H N N 209 DA "HO3'" H N N 210 DA "H2'" H N N 211 DA "H2''" H N N 212 DA "H1'" H N N 213 DA H8 H N N 214 DA H61 H N N 215 DA H62 H N N 216 DA H2 H N N 217 DC OP3 O N N 218 DC P P N N 219 DC OP1 O N N 220 DC OP2 O N N 221 DC "O5'" O N N 222 DC "C5'" C N N 223 DC "C4'" C N R 224 DC "O4'" O N N 225 DC "C3'" C N S 226 DC "O3'" O N N 227 DC "C2'" C N N 228 DC "C1'" C N R 229 DC N1 N N N 230 DC C2 C N N 231 DC O2 O N N 232 DC N3 N N N 233 DC C4 C N N 234 DC N4 N N N 235 DC C5 C N N 236 DC C6 C N N 237 DC HOP3 H N N 238 DC HOP2 H N N 239 DC "H5'" H N N 240 DC "H5''" H N N 241 DC "H4'" H N N 242 DC "H3'" H N N 243 DC "HO3'" H N N 244 DC "H2'" H N N 245 DC "H2''" H N N 246 DC "H1'" H N N 247 DC H41 H N N 248 DC H42 H N N 249 DC H5 H N N 250 DC H6 H N N 251 DG OP3 O N N 252 DG P P N N 253 DG OP1 O N N 254 DG OP2 O N N 255 DG "O5'" O N N 256 DG "C5'" C N N 257 DG "C4'" C N R 258 DG "O4'" O N N 259 DG "C3'" C N S 260 DG "O3'" O N N 261 DG "C2'" C N N 262 DG "C1'" C N R 263 DG N9 N Y N 264 DG C8 C Y N 265 DG N7 N Y N 266 DG C5 C Y N 267 DG C6 C N N 268 DG O6 O N N 269 DG N1 N N N 270 DG C2 C N N 271 DG N2 N N N 272 DG N3 N N N 273 DG C4 C Y N 274 DG HOP3 H N N 275 DG HOP2 H N N 276 DG "H5'" H N N 277 DG "H5''" H N N 278 DG "H4'" H N N 279 DG "H3'" H N N 280 DG "HO3'" H N N 281 DG "H2'" H N N 282 DG "H2''" H N N 283 DG "H1'" H N N 284 DG H8 H N N 285 DG H1 H N N 286 DG H21 H N N 287 DG H22 H N N 288 DT OP3 O N N 289 DT P P N N 290 DT OP1 O N N 291 DT OP2 O N N 292 DT "O5'" O N N 293 DT "C5'" C N N 294 DT "C4'" C N R 295 DT "O4'" O N N 296 DT "C3'" C N S 297 DT "O3'" O N N 298 DT "C2'" C N N 299 DT "C1'" C N R 300 DT N1 N N N 301 DT C2 C N N 302 DT O2 O N N 303 DT N3 N N N 304 DT C4 C N N 305 DT O4 O N N 306 DT C5 C N N 307 DT C7 C N N 308 DT C6 C N N 309 DT HOP3 H N N 310 DT HOP2 H N N 311 DT "H5'" H N N 312 DT "H5''" H N N 313 DT "H4'" H N N 314 DT "H3'" H N N 315 DT "HO3'" H N N 316 DT "H2'" H N N 317 DT "H2''" H N N 318 DT "H1'" H N N 319 DT H3 H N N 320 DT H71 H N N 321 DT H72 H N N 322 DT H73 H N N 323 DT H6 H N N 324 HOH O O N N 325 HOH H1 H N N 326 HOH H2 H N N 327 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1P1 C N sing N N 1 1P1 C O doub N N 2 1P1 C C5 sing N N 3 1P1 N C25 sing N N 4 1P1 C1 C2 sing Y N 5 1P1 C1 N2 sing N N 6 1P1 C1 C3 doub Y N 7 1P1 N1 C3 sing Y N 8 1P1 N1 C4 sing N N 9 1P1 N1 C5 sing Y N 10 1P1 O1 C6 doub N N 11 1P1 C2 C5 doub Y N 12 1P1 N2 C6 sing N N 13 1P1 O2 C12 doub N N 14 1P1 N3 C8 sing Y N 15 1P1 N3 C9 sing N N 16 1P1 N3 C10 sing Y N 17 1P1 O3 C17 doub N N 18 1P1 N4 C7 sing N N 19 1P1 N4 C12 sing N N 20 1P1 O4 C22 doub N N 21 1P1 N5 C14 sing Y N 22 1P1 N5 C15 sing N N 23 1P1 N5 C16 sing Y N 24 1P1 O5 C26 doub N N 25 1P1 C6 C10 sing N N 26 1P1 N6 C13 sing Y N 27 1P1 N6 C16 doub Y N 28 1P1 O6 C32 doub N N 29 1P1 C7 C8 doub Y N 30 1P1 C7 C11 sing Y N 31 1P1 N7 C13 sing N N 32 1P1 N7 C17 sing N N 33 1P1 O7 C38 doub N N 34 1P1 N8 C18 sing Y N 35 1P1 N8 C20 sing Y N 36 1P1 N8 C21 sing N N 37 1P1 O8 C43 doub N N 38 1P1 N9 C18 doub Y N 39 1P1 N9 C19 sing Y N 40 1P1 O9 C48 doub N N 41 1P1 C10 C11 doub Y N 42 1P1 N10 C19 sing N N 43 1P1 N10 C22 sing N N 44 1P1 N11 C23 sing N N 45 1P1 C12 C16 sing N N 46 1P1 N12 C26 sing N N 47 1P1 N12 C51 sing N N 48 1P1 C13 C14 doub Y N 49 1P1 N13 C29 sing Y N 50 1P1 N13 C30 sing N N 51 1P1 N13 C31 sing Y N 52 1P1 N14 C27 sing N N 53 1P1 N14 C32 sing N N 54 1P1 N15 C35 sing Y N 55 1P1 N15 C36 sing N N 56 1P1 N15 C37 sing Y N 57 1P1 N16 C34 sing N N 58 1P1 N16 C38 sing N N 59 1P1 C17 C18 sing N N 60 1P1 N17 C40 sing Y N 61 1P1 N17 C41 sing N N 62 1P1 N17 C42 sing Y N 63 1P1 N18 C39 sing Y N 64 1P1 N18 C42 doub Y N 65 1P1 C19 C20 doub Y N 66 1P1 N19 C39 sing N N 67 1P1 N19 C43 sing N N 68 1P1 N20 C44 sing Y N 69 1P1 N20 C46 sing Y N 70 1P1 N20 C47 sing N N 71 1P1 N21 C44 doub Y N 72 1P1 N21 C45 sing Y N 73 1P1 C22 C49 sing N N 74 1P1 N22 C45 sing N N 75 1P1 N22 C48 sing N N 76 1P1 C23 C24 sing N N 77 1P1 C23 C48 sing N N 78 1P1 N23 C49 sing N N 79 1P1 C24 C25 sing N N 80 1P1 C26 C31 sing N N 81 1P1 C27 C28 sing Y N 82 1P1 C27 C29 doub Y N 83 1P1 C28 C31 doub Y N 84 1P1 C32 C37 sing N N 85 1P1 C33 C34 sing Y N 86 1P1 C33 C37 doub Y N 87 1P1 C34 C35 doub Y N 88 1P1 C38 C42 sing N N 89 1P1 C39 C40 doub Y N 90 1P1 C43 C44 sing N N 91 1P1 C45 C46 doub Y N 92 1P1 C49 C50 sing N N 93 1P1 C50 C51 sing N N 94 1P1 N HN sing N N 95 1P1 C2 H2 sing N N 96 1P1 N2 HN2 sing N N 97 1P1 C3 H3 sing N N 98 1P1 C4 H4 sing N N 99 1P1 C4 H4A sing N N 100 1P1 C4 H4B sing N N 101 1P1 N4 HN4 sing N N 102 1P1 N7 HN7 sing N N 103 1P1 C8 H8 sing N N 104 1P1 C9 H9 sing N N 105 1P1 C9 H9A sing N N 106 1P1 C9 H9B sing N N 107 1P1 N10 HN10 sing N N 108 1P1 C11 H11 sing N N 109 1P1 N11 HN11 sing N N 110 1P1 N11 HN1A sing N N 111 1P1 N12 HN12 sing N N 112 1P1 C14 H14 sing N N 113 1P1 N14 HN14 sing N N 114 1P1 C15 H15 sing N N 115 1P1 C15 H15A sing N N 116 1P1 C15 H15B sing N N 117 1P1 N16 HN16 sing N N 118 1P1 N19 HN19 sing N N 119 1P1 C20 H20 sing N N 120 1P1 C21 H21 sing N N 121 1P1 C21 H21A sing N N 122 1P1 C21 H21B sing N N 123 1P1 N22 HN22 sing N N 124 1P1 C23 H23 sing N N 125 1P1 N23 HN23 sing N N 126 1P1 N23 HN2A sing N N 127 1P1 C24 H24 sing N N 128 1P1 C24 H24A sing N N 129 1P1 C25 H25 sing N N 130 1P1 C25 H25A sing N N 131 1P1 C28 H28 sing N N 132 1P1 C29 H29 sing N N 133 1P1 C30 H30 sing N N 134 1P1 C30 H30A sing N N 135 1P1 C30 H30B sing N N 136 1P1 C33 H33 sing N N 137 1P1 C35 H35 sing N N 138 1P1 C36 H36 sing N N 139 1P1 C36 H36A sing N N 140 1P1 C36 H36B sing N N 141 1P1 C40 H40 sing N N 142 1P1 C41 H41 sing N N 143 1P1 C41 H41A sing N N 144 1P1 C41 H41B sing N N 145 1P1 C46 H46 sing N N 146 1P1 C47 H47 sing N N 147 1P1 C47 H47A sing N N 148 1P1 C47 H47B sing N N 149 1P1 C49 H49 sing N N 150 1P1 C50 H50 sing N N 151 1P1 C50 H50A sing N N 152 1P1 C51 H51 sing N N 153 1P1 C51 H51A sing N N 154 C38 O3P P sing N N 155 C38 O3P H3P sing N N 156 C38 P O1P doub N N 157 C38 P O2P sing N N 158 C38 P "O5'" sing N N 159 C38 O2P H2P sing N N 160 C38 "O5'" "C5'" sing N N 161 C38 "C5'" "C4'" sing N N 162 C38 "C5'" "H5'1" sing N N 163 C38 "C5'" "H5'2" sing N N 164 C38 "C4'" "O4'" sing N N 165 C38 "C4'" "C3'" sing N N 166 C38 "C4'" "H4'" sing N N 167 C38 "O4'" "C1'" sing N N 168 C38 "C3'" "O3'" sing N N 169 C38 "C3'" "C2'" sing N N 170 C38 "C3'" "H3'" sing N N 171 C38 "O3'" HA sing N N 172 C38 "C2'" "C1'" sing N N 173 C38 "C2'" "H2'1" sing N N 174 C38 "C2'" "H2'2" sing N N 175 C38 "C1'" N1 sing N N 176 C38 "C1'" "H1'" sing N N 177 C38 N1 C2 sing N N 178 C38 N1 C6 sing N N 179 C38 C2 O2 doub N N 180 C38 C2 N3 sing N N 181 C38 N3 C4 doub N N 182 C38 C4 N4 sing N N 183 C38 C4 C5 sing N N 184 C38 N4 H4N1 sing N N 185 C38 N4 H4N2 sing N N 186 C38 C5 C6 doub N N 187 C38 C5 I sing N N 188 C38 C6 H6 sing N N 189 DA OP3 P sing N N 190 DA OP3 HOP3 sing N N 191 DA P OP1 doub N N 192 DA P OP2 sing N N 193 DA P "O5'" sing N N 194 DA OP2 HOP2 sing N N 195 DA "O5'" "C5'" sing N N 196 DA "C5'" "C4'" sing N N 197 DA "C5'" "H5'" sing N N 198 DA "C5'" "H5''" sing N N 199 DA "C4'" "O4'" sing N N 200 DA "C4'" "C3'" sing N N 201 DA "C4'" "H4'" sing N N 202 DA "O4'" "C1'" sing N N 203 DA "C3'" "O3'" sing N N 204 DA "C3'" "C2'" sing N N 205 DA "C3'" "H3'" sing N N 206 DA "O3'" "HO3'" sing N N 207 DA "C2'" "C1'" sing N N 208 DA "C2'" "H2'" sing N N 209 DA "C2'" "H2''" sing N N 210 DA "C1'" N9 sing N N 211 DA "C1'" "H1'" sing N N 212 DA N9 C8 sing Y N 213 DA N9 C4 sing Y N 214 DA C8 N7 doub Y N 215 DA C8 H8 sing N N 216 DA N7 C5 sing Y N 217 DA C5 C6 sing Y N 218 DA C5 C4 doub Y N 219 DA C6 N6 sing N N 220 DA C6 N1 doub Y N 221 DA N6 H61 sing N N 222 DA N6 H62 sing N N 223 DA N1 C2 sing Y N 224 DA C2 N3 doub Y N 225 DA C2 H2 sing N N 226 DA N3 C4 sing Y N 227 DC OP3 P sing N N 228 DC OP3 HOP3 sing N N 229 DC P OP1 doub N N 230 DC P OP2 sing N N 231 DC P "O5'" sing N N 232 DC OP2 HOP2 sing N N 233 DC "O5'" "C5'" sing N N 234 DC "C5'" "C4'" sing N N 235 DC "C5'" "H5'" sing N N 236 DC "C5'" "H5''" sing N N 237 DC "C4'" "O4'" sing N N 238 DC "C4'" "C3'" sing N N 239 DC "C4'" "H4'" sing N N 240 DC "O4'" "C1'" sing N N 241 DC "C3'" "O3'" sing N N 242 DC "C3'" "C2'" sing N N 243 DC "C3'" "H3'" sing N N 244 DC "O3'" "HO3'" sing N N 245 DC "C2'" "C1'" sing N N 246 DC "C2'" "H2'" sing N N 247 DC "C2'" "H2''" sing N N 248 DC "C1'" N1 sing N N 249 DC "C1'" "H1'" sing N N 250 DC N1 C2 sing N N 251 DC N1 C6 sing N N 252 DC C2 O2 doub N N 253 DC C2 N3 sing N N 254 DC N3 C4 doub N N 255 DC C4 N4 sing N N 256 DC C4 C5 sing N N 257 DC N4 H41 sing N N 258 DC N4 H42 sing N N 259 DC C5 C6 doub N N 260 DC C5 H5 sing N N 261 DC C6 H6 sing N N 262 DG OP3 P sing N N 263 DG OP3 HOP3 sing N N 264 DG P OP1 doub N N 265 DG P OP2 sing N N 266 DG P "O5'" sing N N 267 DG OP2 HOP2 sing N N 268 DG "O5'" "C5'" sing N N 269 DG "C5'" "C4'" sing N N 270 DG "C5'" "H5'" sing N N 271 DG "C5'" "H5''" sing N N 272 DG "C4'" "O4'" sing N N 273 DG "C4'" "C3'" sing N N 274 DG "C4'" "H4'" sing N N 275 DG "O4'" "C1'" sing N N 276 DG "C3'" "O3'" sing N N 277 DG "C3'" "C2'" sing N N 278 DG "C3'" "H3'" sing N N 279 DG "O3'" "HO3'" sing N N 280 DG "C2'" "C1'" sing N N 281 DG "C2'" "H2'" sing N N 282 DG "C2'" "H2''" sing N N 283 DG "C1'" N9 sing N N 284 DG "C1'" "H1'" sing N N 285 DG N9 C8 sing Y N 286 DG N9 C4 sing Y N 287 DG C8 N7 doub Y N 288 DG C8 H8 sing N N 289 DG N7 C5 sing Y N 290 DG C5 C6 sing N N 291 DG C5 C4 doub Y N 292 DG C6 O6 doub N N 293 DG C6 N1 sing N N 294 DG N1 C2 sing N N 295 DG N1 H1 sing N N 296 DG C2 N2 sing N N 297 DG C2 N3 doub N N 298 DG N2 H21 sing N N 299 DG N2 H22 sing N N 300 DG N3 C4 sing N N 301 DT OP3 P sing N N 302 DT OP3 HOP3 sing N N 303 DT P OP1 doub N N 304 DT P OP2 sing N N 305 DT P "O5'" sing N N 306 DT OP2 HOP2 sing N N 307 DT "O5'" "C5'" sing N N 308 DT "C5'" "C4'" sing N N 309 DT "C5'" "H5'" sing N N 310 DT "C5'" "H5''" sing N N 311 DT "C4'" "O4'" sing N N 312 DT "C4'" "C3'" sing N N 313 DT "C4'" "H4'" sing N N 314 DT "O4'" "C1'" sing N N 315 DT "C3'" "O3'" sing N N 316 DT "C3'" "C2'" sing N N 317 DT "C3'" "H3'" sing N N 318 DT "O3'" "HO3'" sing N N 319 DT "C2'" "C1'" sing N N 320 DT "C2'" "H2'" sing N N 321 DT "C2'" "H2''" sing N N 322 DT "C1'" N1 sing N N 323 DT "C1'" "H1'" sing N N 324 DT N1 C2 sing N N 325 DT N1 C6 sing N N 326 DT C2 O2 doub N N 327 DT C2 N3 sing N N 328 DT N3 C4 sing N N 329 DT N3 H3 sing N N 330 DT C4 O4 doub N N 331 DT C4 C5 sing N N 332 DT C5 C7 sing N N 333 DT C5 C6 doub N N 334 DT C7 H71 sing N N 335 DT C7 H72 sing N N 336 DT C7 H73 sing N N 337 DT C6 H6 sing N N 338 HOH O H1 sing N N 339 HOH O H2 sing N N 340 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3I5L 'double helix' 3I5L 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.147 -0.140 0.160 -5.304 -21.089 -0.688 1 A_DC1:DG10_B A 1 ? B 10 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.101 -0.117 0.093 -9.088 -7.151 -0.932 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.158 -0.065 -0.099 5.620 -12.986 4.729 3 A_DA3:DT8_B A 3 ? B 8 ? 20 1 1 A DG 4 1_555 B DC 7 1_555 -0.071 -0.104 0.080 -1.101 -6.097 -1.941 4 A_DG4:DC7_B A 4 ? B 7 ? 19 1 1 A DG 5 1_555 B C38 6 1_555 -0.171 -0.146 0.068 -2.898 -16.869 -4.392 5 A_DG5:C386_B A 5 ? B 6 ? 19 1 1 A C38 6 1_555 B DG 5 1_555 0.109 -0.131 -0.018 1.598 -15.121 -4.480 6 A_C386:DG5_B A 6 ? B 5 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 0.096 -0.110 -0.091 1.810 -1.598 -0.987 7 A_DC7:DG4_B A 7 ? B 4 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.044 -0.133 -0.209 0.417 -5.103 6.113 8 A_DT8:DA3_B A 8 ? B 3 ? 20 1 1 A DG 9 1_555 B DC 2 1_555 -0.369 -0.261 0.025 11.292 -9.331 0.602 9 A_DG9:DC2_B A 9 ? B 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 0.055 -0.091 0.170 5.280 -24.063 2.778 10 A_DG10:DC1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.002 -0.469 3.327 4.136 11.791 36.263 -2.192 0.521 3.018 18.289 -6.416 38.287 1 AA_DC1DC2:DG9DG10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DC 2 1_555 B DG 9 1_555 A DA 3 1_555 B DT 8 1_555 0.626 0.585 3.080 1.422 7.199 29.918 -0.259 -0.911 3.157 13.686 -2.703 30.785 2 AA_DC2DA3:DT8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A DA 3 1_555 B DT 8 1_555 A DG 4 1_555 B DC 7 1_555 -1.957 0.306 3.275 -8.882 13.464 33.524 -1.496 1.771 3.532 21.842 14.409 37.102 3 AA_DA3DG4:DC7DT8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DG 5 1_555 B C38 6 1_555 -1.349 0.941 3.282 -4.810 1.070 38.713 1.276 1.420 3.443 1.606 7.220 39.014 4 AA_DG4DG5:C386DC7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DG 5 1_555 B C38 6 1_555 A C38 6 1_555 B DG 5 1_555 0.125 -0.023 3.044 0.636 -0.196 33.843 -0.011 -0.120 3.046 -0.336 -1.092 33.849 5 AA_DG5C386:DG5C386_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A C38 6 1_555 B DG 5 1_555 A DC 7 1_555 B DG 4 1_555 1.428 0.838 3.292 5.050 2.571 38.321 0.936 -1.509 3.492 3.891 -7.642 38.722 6 AA_C386DC7:DG4DG5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 1.811 0.380 3.290 5.384 16.091 31.324 -1.926 -2.116 3.347 27.429 -9.176 35.523 7 AA_DC7DT8:DA3DG4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DT 8 1_555 B DA 3 1_555 A DG 9 1_555 B DC 2 1_555 -1.775 1.507 3.082 -2.032 6.539 37.217 1.487 2.479 3.378 10.140 3.151 37.820 8 AA_DT8DG9:DC2DA3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 0.086 0.293 3.434 -3.889 11.053 38.198 -0.926 -0.604 3.364 16.425 5.779 39.890 9 AA_DG9DG10:DC1DC2_BB A 9 ? B 2 ? A 10 ? B 1 ? # _atom_sites.entry_id 3I5L _atom_sites.fract_transf_matrix[1][1] 0.044444 _atom_sites.fract_transf_matrix[1][2] -0.008181 _atom_sites.fract_transf_matrix[1][3] -0.005752 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.040446 _atom_sites.fract_transf_matrix[2][3] -0.016478 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037779 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA I N O P # loop_