data_3I9G # _entry.id 3I9G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3I9G RCSB RCSB054131 WWPDB D_1000054131 # _pdbx_database_status.entry_id 3I9G _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-07-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # _audit_author.name 'Huxford, T.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The crystal structure of sphingosine-1-phosphate in complex with a Fab fragment reveals metal bridging of an antibody and its antigen. ; Proc.Natl.Acad.Sci.USA 106 17717 17722 2009 PNASA6 US 0027-8424 0040 ? 19815502 10.1073/pnas.0906153106 1 'Production and characterization of monoclonal anti-sphingosine-1-phosphate antibodies' 'J.Lipid Res.' ? ? ? 2009 JLPRAW US 0022-2275 0484 ? 19509417 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wojciak, J.M.' 1 primary 'Zhu, N.' 2 primary 'Schuerenberg, K.T.' 3 primary 'Moreno, K.' 4 primary 'Shestowsky, W.S.' 5 primary 'Hiraiwa, M.' 6 primary 'Sabbadini, R.' 7 primary 'Huxford, T.' 8 1 ;O'Brien, N. ; 9 1 'Jones, S.T.' 10 1 'Williams, D.G.' 11 1 'Cunningham, H.B.' 12 1 'Moreno, K.' 13 1 'Visentin, B.' 14 1 'Gentile, A.' 15 1 'Vekich, J.' 16 1 'Shestowsky, W.' 17 1 'Hiraiwa, M.' 18 1 'Matteo, R.' 19 1 'Cavalli, A.' 20 1 'Grotjahn, D.' 21 1 'Grant, M.' 22 1 'Hansen, G.' 23 1 'Campbell, M.A.' 24 1 'Sabbadini, R.' 25 # _cell.length_a 66.052 _cell.length_b 70.889 _cell.length_c 138.719 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3I9G _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3I9G _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sonepcizumab antibody Fab fragment, heavy chain' 24027.127 1 ? ? 'Fab Fragment' ? 2 polymer man 'Sonepcizumab antibody Fab fragment, light chain' 23442.965 1 ? ? 'Fab Fragment' ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 5 non-polymer syn '(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' 379.472 1 ? ? ? ? 6 water nat water 18.015 283 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EVQLVQSGAEVKKPGESLKISCQSFGYIFIDHTIHWMRQMPGQGLEWMGAISPRHDITKYNEMFRGQVTISADKSSSTAY LQWSSLKASDTAMYFCARGGFYGSTIWFDFWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK ; ;EVQLVQSGAEVKKPGESLKISCQSFGYIFIDHTIHWMRQMPGQGLEWMGAISPRHDITKYNEMFRGQVTISADKSSSTAY LQWSSLKASDTAMYFCARGGFYGSTIWFDFWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK ; H ? 2 'polypeptide(L)' no no ;ETTVTQSPSFLSASVGDRVTITCITTTDIDDDMNWFQQEPGKAPKLLISEGNILRPGVPSRFSSSGYGTDFTLTISKLQP EDFATYYCLQSDNLPFTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE ; ;ETTVTQSPSFLSASVGDRVTITCITTTDIDDDMNWFQQEPGKAPKLLISEGNILRPGVPSRFSSSGYGTDFTLTISKLQP EDFATYYCLQSDNLPFTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLN n 1 7 SER n 1 8 GLY n 1 9 ALA n 1 10 GLU n 1 11 VAL n 1 12 LYS n 1 13 LYS n 1 14 PRO n 1 15 GLY n 1 16 GLU n 1 17 SER n 1 18 LEU n 1 19 LYS n 1 20 ILE n 1 21 SER n 1 22 CYS n 1 23 GLN n 1 24 SER n 1 25 PHE n 1 26 GLY n 1 27 TYR n 1 28 ILE n 1 29 PHE n 1 30 ILE n 1 31 ASP n 1 32 HIS n 1 33 THR n 1 34 ILE n 1 35 HIS n 1 36 TRP n 1 37 MET n 1 38 ARG n 1 39 GLN n 1 40 MET n 1 41 PRO n 1 42 GLY n 1 43 GLN n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 MET n 1 49 GLY n 1 50 ALA n 1 51 ILE n 1 52 SER n 1 53 PRO n 1 54 ARG n 1 55 HIS n 1 56 ASP n 1 57 ILE n 1 58 THR n 1 59 LYS n 1 60 TYR n 1 61 ASN n 1 62 GLU n 1 63 MET n 1 64 PHE n 1 65 ARG n 1 66 GLY n 1 67 GLN n 1 68 VAL n 1 69 THR n 1 70 ILE n 1 71 SER n 1 72 ALA n 1 73 ASP n 1 74 LYS n 1 75 SER n 1 76 SER n 1 77 SER n 1 78 THR n 1 79 ALA n 1 80 TYR n 1 81 LEU n 1 82 GLN n 1 83 TRP n 1 84 SER n 1 85 SER n 1 86 LEU n 1 87 LYS n 1 88 ALA n 1 89 SER n 1 90 ASP n 1 91 THR n 1 92 ALA n 1 93 MET n 1 94 TYR n 1 95 PHE n 1 96 CYS n 1 97 ALA n 1 98 ARG n 1 99 GLY n 1 100 GLY n 1 101 PHE n 1 102 TYR n 1 103 GLY n 1 104 SER n 1 105 THR n 1 106 ILE n 1 107 TRP n 1 108 PHE n 1 109 ASP n 1 110 PHE n 1 111 TRP n 1 112 GLY n 1 113 GLN n 1 114 GLY n 1 115 THR n 1 116 MET n 1 117 VAL n 1 118 THR n 1 119 VAL n 1 120 SER n 1 121 SER n 1 122 ALA n 1 123 SER n 1 124 THR n 1 125 LYS n 1 126 GLY n 1 127 PRO n 1 128 SER n 1 129 VAL n 1 130 PHE n 1 131 PRO n 1 132 LEU n 1 133 ALA n 1 134 PRO n 1 135 SER n 1 136 SER n 1 137 LYS n 1 138 SER n 1 139 THR n 1 140 SER n 1 141 GLY n 1 142 GLY n 1 143 THR n 1 144 ALA n 1 145 ALA n 1 146 LEU n 1 147 GLY n 1 148 CYS n 1 149 LEU n 1 150 VAL n 1 151 LYS n 1 152 ASP n 1 153 TYR n 1 154 PHE n 1 155 PRO n 1 156 GLU n 1 157 PRO n 1 158 VAL n 1 159 THR n 1 160 VAL n 1 161 SER n 1 162 TRP n 1 163 ASN n 1 164 SER n 1 165 GLY n 1 166 ALA n 1 167 LEU n 1 168 THR n 1 169 SER n 1 170 GLY n 1 171 VAL n 1 172 HIS n 1 173 THR n 1 174 PHE n 1 175 PRO n 1 176 ALA n 1 177 VAL n 1 178 LEU n 1 179 GLN n 1 180 SER n 1 181 SER n 1 182 GLY n 1 183 LEU n 1 184 TYR n 1 185 SER n 1 186 LEU n 1 187 SER n 1 188 SER n 1 189 VAL n 1 190 VAL n 1 191 THR n 1 192 VAL n 1 193 PRO n 1 194 SER n 1 195 SER n 1 196 SER n 1 197 LEU n 1 198 GLY n 1 199 THR n 1 200 GLN n 1 201 THR n 1 202 TYR n 1 203 ILE n 1 204 CYS n 1 205 ASN n 1 206 VAL n 1 207 ASN n 1 208 HIS n 1 209 LYS n 1 210 PRO n 1 211 SER n 1 212 ASN n 1 213 THR n 1 214 LYS n 1 215 VAL n 1 216 ASP n 1 217 LYS n 1 218 ARG n 1 219 VAL n 1 220 GLU n 1 221 PRO n 1 222 LYS n 2 1 GLU n 2 2 THR n 2 3 THR n 2 4 VAL n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 SER n 2 10 PHE n 2 11 LEU n 2 12 SER n 2 13 ALA n 2 14 SER n 2 15 VAL n 2 16 GLY n 2 17 ASP n 2 18 ARG n 2 19 VAL n 2 20 THR n 2 21 ILE n 2 22 THR n 2 23 CYS n 2 24 ILE n 2 25 THR n 2 26 THR n 2 27 THR n 2 28 ASP n 2 29 ILE n 2 30 ASP n 2 31 ASP n 2 32 ASP n 2 33 MET n 2 34 ASN n 2 35 TRP n 2 36 PHE n 2 37 GLN n 2 38 GLN n 2 39 GLU n 2 40 PRO n 2 41 GLY n 2 42 LYS n 2 43 ALA n 2 44 PRO n 2 45 LYS n 2 46 LEU n 2 47 LEU n 2 48 ILE n 2 49 SER n 2 50 GLU n 2 51 GLY n 2 52 ASN n 2 53 ILE n 2 54 LEU n 2 55 ARG n 2 56 PRO n 2 57 GLY n 2 58 VAL n 2 59 PRO n 2 60 SER n 2 61 ARG n 2 62 PHE n 2 63 SER n 2 64 SER n 2 65 SER n 2 66 GLY n 2 67 TYR n 2 68 GLY n 2 69 THR n 2 70 ASP n 2 71 PHE n 2 72 THR n 2 73 LEU n 2 74 THR n 2 75 ILE n 2 76 SER n 2 77 LYS n 2 78 LEU n 2 79 GLN n 2 80 PRO n 2 81 GLU n 2 82 ASP n 2 83 PHE n 2 84 ALA n 2 85 THR n 2 86 TYR n 2 87 TYR n 2 88 CYS n 2 89 LEU n 2 90 GLN n 2 91 SER n 2 92 ASP n 2 93 ASN n 2 94 LEU n 2 95 PRO n 2 96 PHE n 2 97 THR n 2 98 PHE n 2 99 GLY n 2 100 GLN n 2 101 GLY n 2 102 THR n 2 103 LYS n 2 104 LEU n 2 105 GLU n 2 106 ILE n 2 107 LYS n 2 108 ARG n 2 109 THR n 2 110 VAL n 2 111 ALA n 2 112 ALA n 2 113 PRO n 2 114 SER n 2 115 VAL n 2 116 PHE n 2 117 ILE n 2 118 PHE n 2 119 PRO n 2 120 PRO n 2 121 SER n 2 122 ASP n 2 123 GLU n 2 124 GLN n 2 125 LEU n 2 126 LYS n 2 127 SER n 2 128 GLY n 2 129 THR n 2 130 ALA n 2 131 SER n 2 132 VAL n 2 133 VAL n 2 134 CYS n 2 135 LEU n 2 136 LEU n 2 137 ASN n 2 138 ASN n 2 139 PHE n 2 140 TYR n 2 141 PRO n 2 142 ARG n 2 143 GLU n 2 144 ALA n 2 145 LYS n 2 146 VAL n 2 147 GLN n 2 148 TRP n 2 149 LYS n 2 150 VAL n 2 151 ASP n 2 152 ASN n 2 153 ALA n 2 154 LEU n 2 155 GLN n 2 156 SER n 2 157 GLY n 2 158 ASN n 2 159 SER n 2 160 GLN n 2 161 GLU n 2 162 SER n 2 163 VAL n 2 164 THR n 2 165 GLU n 2 166 GLN n 2 167 ASP n 2 168 SER n 2 169 LYS n 2 170 ASP n 2 171 SER n 2 172 THR n 2 173 TYR n 2 174 SER n 2 175 LEU n 2 176 SER n 2 177 SER n 2 178 THR n 2 179 LEU n 2 180 THR n 2 181 LEU n 2 182 SER n 2 183 LYS n 2 184 ALA n 2 185 ASP n 2 186 TYR n 2 187 GLU n 2 188 LYS n 2 189 HIS n 2 190 LYS n 2 191 VAL n 2 192 TYR n 2 193 ALA n 2 194 CYS n 2 195 GLU n 2 196 VAL n 2 197 THR n 2 198 HIS n 2 199 GLN n 2 200 GLY n 2 201 LEU n 2 202 SER n 2 203 SER n 2 204 PRO n 2 205 VAL n 2 206 THR n 2 207 LYS n 2 208 SER n 2 209 PHE n 2 210 ASN n 2 211 ARG n 2 212 GLY n 2 213 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? IgG1K ? ? ? ? 'Humanized mouse IgG1K expressed from a stable transfected CHO cell line' ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Cricetulus griseus' 10029 ? ? ? ? ? ? ? ? 'CHO cells' ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? ? ? ? ? ? ? 'Humanized mouse IgG1K expressed from a stable transfected CHO cell line' ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Cricetulus griseus' 10029 ? ? ? ? ? ? ? ? 'CHO cells' ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3I9G 3I9G 1 ? ;EVQLVQSGAEVKKPGESLKISCQSFGYIFIDHTIHWMRQMPGQGLEWMGAISPRHDITKYNEMFRGQVTISADKSSSTAY LQWSSLKASDTAMYFCARGGFYGSTIWFDFWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK ; ? 2 PDB 3I9G 3I9G 2 ? ;ETTVTQSPSFLSASVGDRVTITCITTTDIDDDMNWFQQEPGKAPKLLISEGNILRPGVPSRFSSSGYGTDFTLTISKLQP EDFATYYCLQSDNLPFTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE ; ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3I9G H 1 ? 222 ? 3I9G 1 ? 214 ? 1 214 2 2 3I9G L 1 ? 213 ? 3I9G 1 ? 213 ? 1 213 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 S1P non-polymer . '(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' 'sphingosine 1-phosphate' 'C18 H38 N O5 P' 379.472 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3I9G _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.42 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 291.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;1 microliter of 12 mg/mL S1P:Fab complex was mixed with 1 microliter and sealed over 1 mL of reservoir solution containing 22% (w/v) polyethylene glycol 3350, 100 mM MgSO4, 100 mM sodium citrate (pH 6.0) and 10% (v/v) ethylene glycol., VAPOR DIFFUSION, HANGING DROP, temperature 291.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2008-08-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Single crystal, cylindrically bent, Si(220)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97741 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97741 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 # _reflns.entry_id 3I9G _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 3.8 _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50.00 _reflns.number_all 52056 _reflns.number_obs 50494 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 26.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 76.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 2.18 _reflns_shell.pdbx_Rsym_value 0.409 _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.number_unique_all 3940 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3I9G _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 50.00 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.960 _refine.ls_number_reflns_obs 50430 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_R_work 0.190 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.219 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 2548 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.232 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.540 _refine.aniso_B[2][2] -1.260 _refine.aniso_B[3][3] 0.720 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.124 _refine.pdbx_overall_ESU_R_Free 0.119 _refine.overall_SU_ML 0.082 _refine.overall_SU_B 2.810 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 66.32 _refine.B_iso_min 14.74 _refine.occupancy_max 1.00 _refine.occupancy_min 0.35 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3361 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 283 _refine_hist.number_atoms_total 3676 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3471 0.013 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4715 1.542 1.954 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 433 8.849 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 141 35.921 24.752 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 567 15.264 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 21.612 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 527 0.106 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2595 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1442 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 2341 0.299 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 287 0.137 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 12 0.223 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 27 0.110 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 13 0.153 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2235 0.913 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3527 1.506 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1431 2.102 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1188 3.370 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.901 _refine_ls_shell.d_res_low 1.951 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 72.830 _refine_ls_shell.number_reflns_R_work 2601 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.R_factor_R_free 0.276 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 147 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2748 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3I9G _struct.title 'Crystal structure of the LT1009 (SONEPCIZUMAB) antibody Fab fragment in complex with sphingosine-1-phosphate' _struct.pdbx_descriptor 'SONEPCIZUMAB antibody Fab fragment, heavy chain/SONEPCIZUMAB antibody Fab fragment, light chain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3I9G _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Antibody, Fab, Sphingosine-1-phosphate, Calcium, Immunoglobin, IgG, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 6 ? L N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 28 ? HIS A 32 ? ILE H 28 HIS H 32 5 ? 5 HELX_P HELX_P2 2 LYS A 87 ? THR A 91 ? LYS H 83 THR H 87 5 ? 5 HELX_P HELX_P3 3 SER A 164 ? ALA A 166 ? SER H 156 ALA H 158 5 ? 3 HELX_P HELX_P4 4 SER A 195 ? LEU A 197 ? SER H 187 LEU H 189 5 ? 3 HELX_P HELX_P5 5 LYS A 209 ? ASN A 212 ? LYS H 201 ASN H 204 5 ? 4 HELX_P HELX_P6 6 GLN B 79 ? PHE B 83 ? GLN L 79 PHE L 83 5 ? 5 HELX_P HELX_P7 7 SER B 121 ? LYS B 126 ? SER L 121 LYS L 126 1 ? 6 HELX_P HELX_P8 8 LYS B 183 ? LYS B 188 ? LYS L 183 LYS L 188 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 96 SG ? ? H CYS 22 H CYS 92 1_555 ? ? ? ? ? ? ? 2.097 ? disulf2 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 204 SG ? ? H CYS 140 H CYS 196 1_555 ? ? ? ? ? ? ? 2.068 ? disulf3 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 88 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.058 ? disulf4 disulf ? ? B CYS 134 SG ? ? ? 1_555 B CYS 194 SG ? ? L CYS 134 L CYS 194 1_555 ? ? ? ? ? ? ? 2.058 ? metalc1 metalc ? ? B ASP 30 OD1 ? ? ? 1_555 C CA . CA ? ? L ASP 30 L CA 301 1_555 ? ? ? ? ? ? ? 2.107 ? metalc2 metalc ? ? B ASP 30 OD2 ? ? ? 1_555 D CA . CA ? ? L ASP 30 L CA 302 1_555 ? ? ? ? ? ? ? 2.190 ? metalc3 metalc ? ? B ASP 31 OD1 ? ? ? 1_555 C CA . CA ? ? L ASP 31 L CA 301 1_555 ? ? ? ? ? ? ? 2.213 ? metalc4 metalc ? ? B ASP 32 OD1 ? ? ? 1_555 C CA . CA ? ? L ASP 32 L CA 301 1_555 ? ? ? ? ? ? ? 2.185 ? metalc5 metalc ? ? B ASP 32 OD2 ? ? ? 1_555 D CA . CA ? ? L ASP 32 L CA 302 1_555 ? ? ? ? ? ? ? 2.121 ? metalc6 metalc ? ? B ASP 92 OD2 ? ? ? 1_555 D CA . CA ? ? L ASP 92 L CA 302 1_555 ? ? ? ? ? ? ? 2.159 ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 J S1P . O25 ? ? L CA 301 L S1P 401 1_555 ? ? ? ? ? ? ? 2.310 ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 J S1P . O25 ? ? L CA 302 L S1P 401 1_555 ? ? ? ? ? ? ? 2.247 ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 L HOH . O ? ? L CA 301 L HOH 501 1_555 ? ? ? ? ? ? ? 2.154 ? metalc10 metalc ? ? C CA . CA ? ? ? 1_555 L HOH . O ? ? L CA 301 L HOH 504 1_555 ? ? ? ? ? ? ? 2.336 ? metalc11 metalc ? ? D CA . CA ? ? ? 1_555 L HOH . O ? ? L CA 302 L HOH 502 1_555 ? ? ? ? ? ? ? 2.195 ? metalc12 metalc ? ? D CA . CA ? ? ? 1_555 L HOH . O ? ? L CA 302 L HOH 503 1_555 ? ? ? ? ? ? ? 2.286 ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? L MG 303 L HOH 658 1_555 ? ? ? ? ? ? ? 2.121 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 154 A . ? PHE 146 H PRO 155 A ? PRO 147 H 1 -3.15 2 GLU 156 A . ? GLU 148 H PRO 157 A ? PRO 149 H 1 -5.57 3 LEU 197 A . ? LEU 189 H GLY 198 A ? GLY 190 H 1 -1.16 4 SER 7 B . ? SER 7 L PRO 8 B ? PRO 8 L 1 -3.15 5 LEU 94 B . ? LEU 94 L PRO 95 B ? PRO 95 L 1 -1.43 6 TYR 140 B . ? TYR 140 L PRO 141 B ? PRO 141 L 1 5.88 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 4 ? E ? 3 ? F ? 4 ? G ? 6 ? H ? 4 ? I ? 4 ? J ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel G 4 5 ? anti-parallel G 5 6 ? anti-parallel H 1 2 ? parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel I 1 2 ? anti-parallel I 2 3 ? anti-parallel I 3 4 ? anti-parallel J 1 2 ? anti-parallel J 2 3 ? anti-parallel J 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 3 ? GLN A 6 ? GLN H 3 GLN H 6 A 2 LEU A 18 ? PHE A 25 ? LEU H 18 PHE H 25 A 3 THR A 78 ? TRP A 83 ? THR H 77 TRP H 82 A 4 THR A 69 ? ASP A 73 ? THR H 68 ASP H 72 B 1 GLU A 10 ? LYS A 12 ? GLU H 10 LYS H 12 B 2 THR A 115 ? VAL A 119 ? THR H 107 VAL H 111 B 3 ALA A 92 ? GLY A 99 ? ALA H 88 GLY H 95 B 4 THR A 33 ? GLN A 39 ? THR H 33 GLN H 39 B 5 GLU A 46 ? SER A 52 ? GLU H 46 SER H 52 B 6 ILE A 57 ? TYR A 60 ? ILE H 56 TYR H 59 C 1 SER A 128 ? LEU A 132 ? SER H 120 LEU H 124 C 2 THR A 143 ? TYR A 153 ? THR H 135 TYR H 145 C 3 TYR A 184 ? PRO A 193 ? TYR H 176 PRO H 185 C 4 VAL A 171 ? THR A 173 ? VAL H 163 THR H 165 D 1 SER A 128 ? LEU A 132 ? SER H 120 LEU H 124 D 2 THR A 143 ? TYR A 153 ? THR H 135 TYR H 145 D 3 TYR A 184 ? PRO A 193 ? TYR H 176 PRO H 185 D 4 VAL A 177 ? LEU A 178 ? VAL H 169 LEU H 170 E 1 THR A 159 ? TRP A 162 ? THR H 151 TRP H 154 E 2 ILE A 203 ? HIS A 208 ? ILE H 195 HIS H 200 E 3 THR A 213 ? ARG A 218 ? THR H 205 ARG H 210 F 1 VAL B 4 ? SER B 7 ? VAL L 4 SER L 7 F 2 VAL B 19 ? THR B 25 ? VAL L 19 THR L 25 F 3 ASP B 70 ? ILE B 75 ? ASP L 70 ILE L 75 F 4 PHE B 62 ? GLY B 66 ? PHE L 62 GLY L 66 G 1 PHE B 10 ? ALA B 13 ? PHE L 10 ALA L 13 G 2 THR B 102 ? ILE B 106 ? THR L 102 ILE L 106 G 3 THR B 85 ? GLN B 90 ? THR L 85 GLN L 90 G 4 MET B 33 ? GLN B 38 ? MET L 33 GLN L 38 G 5 LYS B 45 ? SER B 49 ? LYS L 45 SER L 49 G 6 ILE B 53 ? LEU B 54 ? ILE L 53 LEU L 54 H 1 PHE B 10 ? ALA B 13 ? PHE L 10 ALA L 13 H 2 THR B 102 ? ILE B 106 ? THR L 102 ILE L 106 H 3 THR B 85 ? GLN B 90 ? THR L 85 GLN L 90 H 4 THR B 97 ? PHE B 98 ? THR L 97 PHE L 98 I 1 SER B 114 ? PHE B 118 ? SER L 114 PHE L 118 I 2 THR B 129 ? PHE B 139 ? THR L 129 PHE L 139 I 3 TYR B 173 ? SER B 182 ? TYR L 173 SER L 182 I 4 SER B 159 ? VAL B 163 ? SER L 159 VAL L 163 J 1 ALA B 153 ? LEU B 154 ? ALA L 153 LEU L 154 J 2 LYS B 145 ? VAL B 150 ? LYS L 145 VAL L 150 J 3 VAL B 191 ? THR B 197 ? VAL L 191 THR L 197 J 4 VAL B 205 ? ASN B 210 ? VAL L 205 ASN L 210 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 5 ? N VAL H 5 O GLN A 23 ? O GLN H 23 A 2 3 N CYS A 22 ? N CYS H 22 O ALA A 79 ? O ALA H 78 A 3 4 O THR A 78 ? O THR H 77 N ASP A 73 ? N ASP H 72 B 1 2 N GLU A 10 ? N GLU H 10 O MET A 116 ? O MET H 108 B 2 3 O THR A 115 ? O THR H 107 N TYR A 94 ? N TYR H 90 B 3 4 O PHE A 95 ? O PHE H 91 N MET A 37 ? N MET H 37 B 4 5 N TRP A 36 ? N TRP H 36 O MET A 48 ? O MET H 48 B 5 6 N ALA A 50 ? N ALA H 50 O LYS A 59 ? O LYS H 58 C 1 2 N PHE A 130 ? N PHE H 122 O LEU A 149 ? O LEU H 141 C 2 3 N VAL A 150 ? N VAL H 142 O LEU A 186 ? O LEU H 178 C 3 4 O VAL A 189 ? O VAL H 181 N HIS A 172 ? N HIS H 164 D 1 2 N PHE A 130 ? N PHE H 122 O LEU A 149 ? O LEU H 141 D 2 3 N VAL A 150 ? N VAL H 142 O LEU A 186 ? O LEU H 178 D 3 4 O SER A 185 ? O SER H 177 N VAL A 177 ? N VAL H 169 E 1 2 N SER A 161 ? N SER H 153 O ASN A 205 ? O ASN H 197 E 2 3 N HIS A 208 ? N HIS H 200 O THR A 213 ? O THR H 205 F 1 2 N THR B 5 ? N THR L 5 O ILE B 24 ? O ILE L 24 F 2 3 N ILE B 21 ? N ILE L 21 O LEU B 73 ? O LEU L 73 F 3 4 O THR B 74 ? O THR L 74 N SER B 63 ? N SER L 63 G 1 2 N LEU B 11 ? N LEU L 11 O GLU B 105 ? O GLU L 105 G 2 3 O THR B 102 ? O THR L 102 N TYR B 86 ? N TYR L 86 G 3 4 O THR B 85 ? O THR L 85 N GLN B 38 ? N GLN L 38 G 4 5 N TRP B 35 ? N TRP L 35 O LEU B 47 ? O LEU L 47 G 5 6 N SER B 49 ? N SER L 49 O ILE B 53 ? O ILE L 53 H 1 2 N LEU B 11 ? N LEU L 11 O GLU B 105 ? O GLU L 105 H 2 3 O THR B 102 ? O THR L 102 N TYR B 86 ? N TYR L 86 H 3 4 N GLN B 90 ? N GLN L 90 O THR B 97 ? O THR L 97 I 1 2 N SER B 114 ? N SER L 114 O ASN B 137 ? O ASN L 137 I 2 3 N VAL B 132 ? N VAL L 132 O LEU B 179 ? O LEU L 179 I 3 4 O THR B 178 ? O THR L 178 N GLN B 160 ? N GLN L 160 J 1 2 O ALA B 153 ? O ALA L 153 N VAL B 150 ? N VAL L 150 J 2 3 N GLN B 147 ? N GLN L 147 O GLU B 195 ? O GLU L 195 J 3 4 N VAL B 196 ? N VAL L 196 O VAL B 205 ? O VAL L 205 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA L 301' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA L 302' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG L 303' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG L 305' AC5 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE MG L 307' AC6 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE S1P L 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP B 30 ? ASP L 30 . ? 1_555 ? 2 AC1 6 ASP B 31 ? ASP L 31 . ? 1_555 ? 3 AC1 6 ASP B 32 ? ASP L 32 . ? 1_555 ? 4 AC1 6 S1P J . ? S1P L 401 . ? 1_555 ? 5 AC1 6 HOH L . ? HOH L 501 . ? 1_555 ? 6 AC1 6 HOH L . ? HOH L 504 . ? 1_555 ? 7 AC2 6 ASP B 30 ? ASP L 30 . ? 1_555 ? 8 AC2 6 ASP B 32 ? ASP L 32 . ? 1_555 ? 9 AC2 6 ASP B 92 ? ASP L 92 . ? 1_555 ? 10 AC2 6 S1P J . ? S1P L 401 . ? 1_555 ? 11 AC2 6 HOH L . ? HOH L 502 . ? 1_555 ? 12 AC2 6 HOH L . ? HOH L 503 . ? 1_555 ? 13 AC3 4 SER B 12 ? SER L 12 . ? 1_555 ? 14 AC3 4 ASP B 92 ? ASP L 92 . ? 3_545 ? 15 AC3 4 LYS B 107 ? LYS L 107 . ? 1_555 ? 16 AC3 4 HOH L . ? HOH L 658 . ? 1_555 ? 17 AC4 2 TYR A 60 ? TYR H 59 . ? 3_545 ? 18 AC4 2 ARG A 65 ? ARG H 64 . ? 3_545 ? 19 AC5 1 ASP A 216 ? ASP H 208 . ? 4_545 ? 20 AC6 16 THR A 33 ? THR H 33 . ? 1_555 ? 21 AC6 16 GLY A 103 ? GLY H 99 . ? 1_555 ? 22 AC6 16 SER A 104 ? SER H 100 . ? 1_555 ? 23 AC6 16 ASP B 30 ? ASP L 30 . ? 1_555 ? 24 AC6 16 ASP B 32 ? ASP L 32 . ? 1_555 ? 25 AC6 16 GLU B 50 ? GLU L 50 . ? 1_555 ? 26 AC6 16 SER B 91 ? SER L 91 . ? 1_555 ? 27 AC6 16 ASP B 92 ? ASP L 92 . ? 1_555 ? 28 AC6 16 LEU B 94 ? LEU L 94 . ? 1_555 ? 29 AC6 16 CA C . ? CA L 301 . ? 1_555 ? 30 AC6 16 CA D . ? CA L 302 . ? 1_555 ? 31 AC6 16 HOH L . ? HOH L 502 . ? 1_555 ? 32 AC6 16 HOH L . ? HOH L 503 . ? 1_555 ? 33 AC6 16 HOH L . ? HOH L 504 . ? 1_555 ? 34 AC6 16 HOH L . ? HOH L 505 . ? 1_555 ? 35 AC6 16 HOH L . ? HOH L 506 . ? 1_555 ? # _atom_sites.entry_id 3I9G _atom_sites.fract_transf_matrix[1][1] 0.015140 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014107 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007209 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU H . n A 1 2 VAL 2 2 2 VAL VAL H . n A 1 3 GLN 3 3 3 GLN GLN H . n A 1 4 LEU 4 4 4 LEU LEU H . n A 1 5 VAL 5 5 5 VAL VAL H . n A 1 6 GLN 6 6 6 GLN GLN H . n A 1 7 SER 7 7 7 SER SER H . n A 1 8 GLY 8 8 8 GLY GLY H . n A 1 9 ALA 9 9 9 ALA ALA H . n A 1 10 GLU 10 10 10 GLU GLU H . n A 1 11 VAL 11 11 11 VAL VAL H . n A 1 12 LYS 12 12 12 LYS LYS H . n A 1 13 LYS 13 13 13 LYS LYS H . n A 1 14 PRO 14 14 14 PRO PRO H . n A 1 15 GLY 15 15 15 GLY GLY H . n A 1 16 GLU 16 16 16 GLU GLU H . n A 1 17 SER 17 17 17 SER SER H . n A 1 18 LEU 18 18 18 LEU LEU H . n A 1 19 LYS 19 19 19 LYS LYS H . n A 1 20 ILE 20 20 20 ILE ILE H . n A 1 21 SER 21 21 21 SER SER H . n A 1 22 CYS 22 22 22 CYS CYS H . n A 1 23 GLN 23 23 23 GLN GLN H . n A 1 24 SER 24 24 24 SER SER H . n A 1 25 PHE 25 25 25 PHE PHE H . n A 1 26 GLY 26 26 26 GLY GLY H . n A 1 27 TYR 27 27 27 TYR TYR H . n A 1 28 ILE 28 28 28 ILE ILE H . n A 1 29 PHE 29 29 29 PHE PHE H . n A 1 30 ILE 30 30 30 ILE ILE H . n A 1 31 ASP 31 31 31 ASP ASP H . n A 1 32 HIS 32 32 32 HIS HIS H . n A 1 33 THR 33 33 33 THR THR H . n A 1 34 ILE 34 34 34 ILE ILE H . n A 1 35 HIS 35 35 35 HIS HIS H . n A 1 36 TRP 36 36 36 TRP TRP H . n A 1 37 MET 37 37 37 MET MET H . n A 1 38 ARG 38 38 38 ARG ARG H . n A 1 39 GLN 39 39 39 GLN GLN H . n A 1 40 MET 40 40 40 MET MET H . n A 1 41 PRO 41 41 41 PRO PRO H . n A 1 42 GLY 42 42 42 GLY GLY H . n A 1 43 GLN 43 43 43 GLN GLN H . n A 1 44 GLY 44 44 44 GLY GLY H . n A 1 45 LEU 45 45 45 LEU LEU H . n A 1 46 GLU 46 46 46 GLU GLU H . n A 1 47 TRP 47 47 47 TRP TRP H . n A 1 48 MET 48 48 48 MET MET H . n A 1 49 GLY 49 49 49 GLY GLY H . n A 1 50 ALA 50 50 50 ALA ALA H . n A 1 51 ILE 51 51 51 ILE ILE H . n A 1 52 SER 52 52 52 SER SER H . n A 1 53 PRO 53 52 52 PRO PRO H A n A 1 54 ARG 54 53 53 ARG ARG H . n A 1 55 HIS 55 54 54 HIS HIS H . n A 1 56 ASP 56 55 55 ASP ASP H . n A 1 57 ILE 57 56 56 ILE ILE H . n A 1 58 THR 58 57 57 THR THR H . n A 1 59 LYS 59 58 58 LYS LYS H . n A 1 60 TYR 60 59 59 TYR TYR H . n A 1 61 ASN 61 60 60 ASN ASN H . n A 1 62 GLU 62 61 61 GLU GLU H . n A 1 63 MET 63 62 62 MET MET H . n A 1 64 PHE 64 63 63 PHE PHE H . n A 1 65 ARG 65 64 64 ARG ARG H . n A 1 66 GLY 66 65 65 GLY GLY H . n A 1 67 GLN 67 66 66 GLN GLN H . n A 1 68 VAL 68 67 67 VAL VAL H . n A 1 69 THR 69 68 68 THR THR H . n A 1 70 ILE 70 69 69 ILE ILE H . n A 1 71 SER 71 70 70 SER SER H . n A 1 72 ALA 72 71 71 ALA ALA H . n A 1 73 ASP 73 72 72 ASP ASP H . n A 1 74 LYS 74 73 73 LYS LYS H . n A 1 75 SER 75 74 74 SER SER H . n A 1 76 SER 76 75 75 SER SER H . n A 1 77 SER 77 76 76 SER SER H . n A 1 78 THR 78 77 77 THR THR H . n A 1 79 ALA 79 78 78 ALA ALA H . n A 1 80 TYR 80 79 79 TYR TYR H . n A 1 81 LEU 81 80 80 LEU LEU H . n A 1 82 GLN 82 81 81 GLN GLN H . n A 1 83 TRP 83 82 82 TRP TRP H . n A 1 84 SER 84 82 82 SER SER H A n A 1 85 SER 85 82 82 SER SER H B n A 1 86 LEU 86 82 82 LEU LEU H C n A 1 87 LYS 87 83 83 LYS LYS H . n A 1 88 ALA 88 84 84 ALA ALA H . n A 1 89 SER 89 85 85 SER SER H . n A 1 90 ASP 90 86 86 ASP ASP H . n A 1 91 THR 91 87 87 THR THR H . n A 1 92 ALA 92 88 88 ALA ALA H . n A 1 93 MET 93 89 89 MET MET H . n A 1 94 TYR 94 90 90 TYR TYR H . n A 1 95 PHE 95 91 91 PHE PHE H . n A 1 96 CYS 96 92 92 CYS CYS H . n A 1 97 ALA 97 93 93 ALA ALA H . n A 1 98 ARG 98 94 94 ARG ARG H . n A 1 99 GLY 99 95 95 GLY GLY H . n A 1 100 GLY 100 96 96 GLY GLY H . n A 1 101 PHE 101 97 97 PHE PHE H . n A 1 102 TYR 102 98 98 TYR TYR H . n A 1 103 GLY 103 99 99 GLY GLY H . n A 1 104 SER 104 100 100 SER SER H . n A 1 105 THR 105 100 100 THR THR H A n A 1 106 ILE 106 100 100 ILE ILE H B n A 1 107 TRP 107 100 100 TRP TRP H C n A 1 108 PHE 108 100 100 PHE PHE H D n A 1 109 ASP 109 101 101 ASP ASP H . n A 1 110 PHE 110 102 102 PHE PHE H . n A 1 111 TRP 111 103 103 TRP TRP H . n A 1 112 GLY 112 104 104 GLY GLY H . n A 1 113 GLN 113 105 105 GLN GLN H . n A 1 114 GLY 114 106 106 GLY GLY H . n A 1 115 THR 115 107 107 THR THR H . n A 1 116 MET 116 108 108 MET MET H . n A 1 117 VAL 117 109 109 VAL VAL H . n A 1 118 THR 118 110 110 THR THR H . n A 1 119 VAL 119 111 111 VAL VAL H . n A 1 120 SER 120 112 112 SER SER H . n A 1 121 SER 121 113 113 SER SER H . n A 1 122 ALA 122 114 114 ALA ALA H . n A 1 123 SER 123 115 115 SER SER H . n A 1 124 THR 124 116 116 THR THR H . n A 1 125 LYS 125 117 117 LYS LYS H . n A 1 126 GLY 126 118 118 GLY GLY H . n A 1 127 PRO 127 119 119 PRO PRO H . n A 1 128 SER 128 120 120 SER SER H . n A 1 129 VAL 129 121 121 VAL VAL H . n A 1 130 PHE 130 122 122 PHE PHE H . n A 1 131 PRO 131 123 123 PRO PRO H . n A 1 132 LEU 132 124 124 LEU LEU H . n A 1 133 ALA 133 125 125 ALA ALA H . n A 1 134 PRO 134 126 126 PRO PRO H . n A 1 135 SER 135 127 127 SER SER H . n A 1 136 SER 136 128 128 SER SER H . n A 1 137 LYS 137 129 129 LYS LYS H . n A 1 138 SER 138 130 130 SER SER H . n A 1 139 THR 139 131 131 THR THR H . n A 1 140 SER 140 132 132 SER SER H . n A 1 141 GLY 141 133 133 GLY GLY H . n A 1 142 GLY 142 134 134 GLY GLY H . n A 1 143 THR 143 135 135 THR THR H . n A 1 144 ALA 144 136 136 ALA ALA H . n A 1 145 ALA 145 137 137 ALA ALA H . n A 1 146 LEU 146 138 138 LEU LEU H . n A 1 147 GLY 147 139 139 GLY GLY H . n A 1 148 CYS 148 140 140 CYS CYS H . n A 1 149 LEU 149 141 141 LEU LEU H . n A 1 150 VAL 150 142 142 VAL VAL H . n A 1 151 LYS 151 143 143 LYS LYS H . n A 1 152 ASP 152 144 144 ASP ASP H . n A 1 153 TYR 153 145 145 TYR TYR H . n A 1 154 PHE 154 146 146 PHE PHE H . n A 1 155 PRO 155 147 147 PRO PRO H . n A 1 156 GLU 156 148 148 GLU GLU H . n A 1 157 PRO 157 149 149 PRO PRO H . n A 1 158 VAL 158 150 150 VAL VAL H . n A 1 159 THR 159 151 151 THR THR H . n A 1 160 VAL 160 152 152 VAL VAL H . n A 1 161 SER 161 153 153 SER SER H . n A 1 162 TRP 162 154 154 TRP TRP H . n A 1 163 ASN 163 155 155 ASN ASN H . n A 1 164 SER 164 156 156 SER SER H . n A 1 165 GLY 165 157 157 GLY GLY H . n A 1 166 ALA 166 158 158 ALA ALA H . n A 1 167 LEU 167 159 159 LEU LEU H . n A 1 168 THR 168 160 160 THR THR H . n A 1 169 SER 169 161 161 SER SER H . n A 1 170 GLY 170 162 162 GLY GLY H . n A 1 171 VAL 171 163 163 VAL VAL H . n A 1 172 HIS 172 164 164 HIS HIS H . n A 1 173 THR 173 165 165 THR THR H . n A 1 174 PHE 174 166 166 PHE PHE H . n A 1 175 PRO 175 167 167 PRO PRO H . n A 1 176 ALA 176 168 168 ALA ALA H . n A 1 177 VAL 177 169 169 VAL VAL H . n A 1 178 LEU 178 170 170 LEU LEU H . n A 1 179 GLN 179 171 171 GLN GLN H . n A 1 180 SER 180 172 172 SER SER H . n A 1 181 SER 181 173 173 SER SER H . n A 1 182 GLY 182 174 174 GLY GLY H . n A 1 183 LEU 183 175 175 LEU LEU H . n A 1 184 TYR 184 176 176 TYR TYR H . n A 1 185 SER 185 177 177 SER SER H . n A 1 186 LEU 186 178 178 LEU LEU H . n A 1 187 SER 187 179 179 SER SER H . n A 1 188 SER 188 180 180 SER SER H . n A 1 189 VAL 189 181 181 VAL VAL H . n A 1 190 VAL 190 182 182 VAL VAL H . n A 1 191 THR 191 183 183 THR THR H . n A 1 192 VAL 192 184 184 VAL VAL H . n A 1 193 PRO 193 185 185 PRO PRO H . n A 1 194 SER 194 186 186 SER SER H . n A 1 195 SER 195 187 187 SER SER H . n A 1 196 SER 196 188 188 SER SER H . n A 1 197 LEU 197 189 189 LEU LEU H . n A 1 198 GLY 198 190 190 GLY GLY H . n A 1 199 THR 199 191 191 THR THR H . n A 1 200 GLN 200 192 192 GLN GLN H . n A 1 201 THR 201 193 193 THR THR H . n A 1 202 TYR 202 194 194 TYR TYR H . n A 1 203 ILE 203 195 195 ILE ILE H . n A 1 204 CYS 204 196 196 CYS CYS H . n A 1 205 ASN 205 197 197 ASN ASN H . n A 1 206 VAL 206 198 198 VAL VAL H . n A 1 207 ASN 207 199 199 ASN ASN H . n A 1 208 HIS 208 200 200 HIS HIS H . n A 1 209 LYS 209 201 201 LYS LYS H . n A 1 210 PRO 210 202 202 PRO PRO H . n A 1 211 SER 211 203 203 SER SER H . n A 1 212 ASN 212 204 204 ASN ASN H . n A 1 213 THR 213 205 205 THR THR H . n A 1 214 LYS 214 206 206 LYS LYS H . n A 1 215 VAL 215 207 207 VAL VAL H . n A 1 216 ASP 216 208 208 ASP ASP H . n A 1 217 LYS 217 209 209 LYS LYS H . n A 1 218 ARG 218 210 210 ARG ARG H . n A 1 219 VAL 219 211 211 VAL VAL H . n A 1 220 GLU 220 212 212 GLU GLU H . n A 1 221 PRO 221 213 213 PRO PRO H . n A 1 222 LYS 222 214 214 LYS LYS H . n B 2 1 GLU 1 1 1 GLU GLU L . n B 2 2 THR 2 2 2 THR THR L . n B 2 3 THR 3 3 3 THR THR L . n B 2 4 VAL 4 4 4 VAL VAL L . n B 2 5 THR 5 5 5 THR THR L . n B 2 6 GLN 6 6 6 GLN GLN L . n B 2 7 SER 7 7 7 SER SER L . n B 2 8 PRO 8 8 8 PRO PRO L . n B 2 9 SER 9 9 9 SER SER L . n B 2 10 PHE 10 10 10 PHE PHE L . n B 2 11 LEU 11 11 11 LEU LEU L . n B 2 12 SER 12 12 12 SER SER L . n B 2 13 ALA 13 13 13 ALA ALA L . n B 2 14 SER 14 14 14 SER SER L . n B 2 15 VAL 15 15 15 VAL VAL L . n B 2 16 GLY 16 16 16 GLY GLY L . n B 2 17 ASP 17 17 17 ASP ASP L . n B 2 18 ARG 18 18 18 ARG ARG L . n B 2 19 VAL 19 19 19 VAL VAL L . n B 2 20 THR 20 20 20 THR THR L . n B 2 21 ILE 21 21 21 ILE ILE L . n B 2 22 THR 22 22 22 THR THR L . n B 2 23 CYS 23 23 23 CYS CYS L . n B 2 24 ILE 24 24 24 ILE ILE L . n B 2 25 THR 25 25 25 THR THR L . n B 2 26 THR 26 26 26 THR THR L . n B 2 27 THR 27 27 27 THR THR L . n B 2 28 ASP 28 28 28 ASP ASP L . n B 2 29 ILE 29 29 29 ILE ILE L . n B 2 30 ASP 30 30 30 ASP ASP L . n B 2 31 ASP 31 31 31 ASP ASP L . n B 2 32 ASP 32 32 32 ASP ASP L . n B 2 33 MET 33 33 33 MET MET L . n B 2 34 ASN 34 34 34 ASN ASN L . n B 2 35 TRP 35 35 35 TRP TRP L . n B 2 36 PHE 36 36 36 PHE PHE L . n B 2 37 GLN 37 37 37 GLN GLN L . n B 2 38 GLN 38 38 38 GLN GLN L . n B 2 39 GLU 39 39 39 GLU GLU L . n B 2 40 PRO 40 40 40 PRO PRO L . n B 2 41 GLY 41 41 41 GLY GLY L . n B 2 42 LYS 42 42 42 LYS LYS L . n B 2 43 ALA 43 43 43 ALA ALA L . n B 2 44 PRO 44 44 44 PRO PRO L . n B 2 45 LYS 45 45 45 LYS LYS L . n B 2 46 LEU 46 46 46 LEU LEU L . n B 2 47 LEU 47 47 47 LEU LEU L . n B 2 48 ILE 48 48 48 ILE ILE L . n B 2 49 SER 49 49 49 SER SER L . n B 2 50 GLU 50 50 50 GLU GLU L . n B 2 51 GLY 51 51 51 GLY GLY L . n B 2 52 ASN 52 52 52 ASN ASN L . n B 2 53 ILE 53 53 53 ILE ILE L . n B 2 54 LEU 54 54 54 LEU LEU L . n B 2 55 ARG 55 55 55 ARG ARG L . n B 2 56 PRO 56 56 56 PRO PRO L . n B 2 57 GLY 57 57 57 GLY GLY L . n B 2 58 VAL 58 58 58 VAL VAL L . n B 2 59 PRO 59 59 59 PRO PRO L . n B 2 60 SER 60 60 60 SER SER L . n B 2 61 ARG 61 61 61 ARG ARG L . n B 2 62 PHE 62 62 62 PHE PHE L . n B 2 63 SER 63 63 63 SER SER L . n B 2 64 SER 64 64 64 SER SER L . n B 2 65 SER 65 65 65 SER SER L . n B 2 66 GLY 66 66 66 GLY GLY L . n B 2 67 TYR 67 67 67 TYR TYR L . n B 2 68 GLY 68 68 68 GLY GLY L . n B 2 69 THR 69 69 69 THR THR L . n B 2 70 ASP 70 70 70 ASP ASP L . n B 2 71 PHE 71 71 71 PHE PHE L . n B 2 72 THR 72 72 72 THR THR L . n B 2 73 LEU 73 73 73 LEU LEU L . n B 2 74 THR 74 74 74 THR THR L . n B 2 75 ILE 75 75 75 ILE ILE L . n B 2 76 SER 76 76 76 SER SER L . n B 2 77 LYS 77 77 77 LYS LYS L . n B 2 78 LEU 78 78 78 LEU LEU L . n B 2 79 GLN 79 79 79 GLN GLN L . n B 2 80 PRO 80 80 80 PRO PRO L . n B 2 81 GLU 81 81 81 GLU GLU L . n B 2 82 ASP 82 82 82 ASP ASP L . n B 2 83 PHE 83 83 83 PHE PHE L . n B 2 84 ALA 84 84 84 ALA ALA L . n B 2 85 THR 85 85 85 THR THR L . n B 2 86 TYR 86 86 86 TYR TYR L . n B 2 87 TYR 87 87 87 TYR TYR L . n B 2 88 CYS 88 88 88 CYS CYS L . n B 2 89 LEU 89 89 89 LEU LEU L . n B 2 90 GLN 90 90 90 GLN GLN L . n B 2 91 SER 91 91 91 SER SER L . n B 2 92 ASP 92 92 92 ASP ASP L . n B 2 93 ASN 93 93 93 ASN ASN L . n B 2 94 LEU 94 94 94 LEU LEU L . n B 2 95 PRO 95 95 95 PRO PRO L . n B 2 96 PHE 96 96 96 PHE PHE L . n B 2 97 THR 97 97 97 THR THR L . n B 2 98 PHE 98 98 98 PHE PHE L . n B 2 99 GLY 99 99 99 GLY GLY L . n B 2 100 GLN 100 100 100 GLN GLN L . n B 2 101 GLY 101 101 101 GLY GLY L . n B 2 102 THR 102 102 102 THR THR L . n B 2 103 LYS 103 103 103 LYS LYS L . n B 2 104 LEU 104 104 104 LEU LEU L . n B 2 105 GLU 105 105 105 GLU GLU L . n B 2 106 ILE 106 106 106 ILE ILE L . n B 2 107 LYS 107 107 107 LYS LYS L . n B 2 108 ARG 108 108 108 ARG ARG L . n B 2 109 THR 109 109 109 THR THR L . n B 2 110 VAL 110 110 110 VAL VAL L . n B 2 111 ALA 111 111 111 ALA ALA L . n B 2 112 ALA 112 112 112 ALA ALA L . n B 2 113 PRO 113 113 113 PRO PRO L . n B 2 114 SER 114 114 114 SER SER L . n B 2 115 VAL 115 115 115 VAL VAL L . n B 2 116 PHE 116 116 116 PHE PHE L . n B 2 117 ILE 117 117 117 ILE ILE L . n B 2 118 PHE 118 118 118 PHE PHE L . n B 2 119 PRO 119 119 119 PRO PRO L . n B 2 120 PRO 120 120 120 PRO PRO L . n B 2 121 SER 121 121 121 SER SER L . n B 2 122 ASP 122 122 122 ASP ASP L . n B 2 123 GLU 123 123 123 GLU GLU L . n B 2 124 GLN 124 124 124 GLN GLN L . n B 2 125 LEU 125 125 125 LEU LEU L . n B 2 126 LYS 126 126 126 LYS LYS L . n B 2 127 SER 127 127 127 SER SER L . n B 2 128 GLY 128 128 128 GLY GLY L . n B 2 129 THR 129 129 129 THR THR L . n B 2 130 ALA 130 130 130 ALA ALA L . n B 2 131 SER 131 131 131 SER SER L . n B 2 132 VAL 132 132 132 VAL VAL L . n B 2 133 VAL 133 133 133 VAL VAL L . n B 2 134 CYS 134 134 134 CYS CYS L . n B 2 135 LEU 135 135 135 LEU LEU L . n B 2 136 LEU 136 136 136 LEU LEU L . n B 2 137 ASN 137 137 137 ASN ASN L . n B 2 138 ASN 138 138 138 ASN ASN L . n B 2 139 PHE 139 139 139 PHE PHE L . n B 2 140 TYR 140 140 140 TYR TYR L . n B 2 141 PRO 141 141 141 PRO PRO L . n B 2 142 ARG 142 142 142 ARG ARG L . n B 2 143 GLU 143 143 143 GLU GLU L . n B 2 144 ALA 144 144 144 ALA ALA L . n B 2 145 LYS 145 145 145 LYS LYS L . n B 2 146 VAL 146 146 146 VAL VAL L . n B 2 147 GLN 147 147 147 GLN GLN L . n B 2 148 TRP 148 148 148 TRP TRP L . n B 2 149 LYS 149 149 149 LYS LYS L . n B 2 150 VAL 150 150 150 VAL VAL L . n B 2 151 ASP 151 151 151 ASP ASP L . n B 2 152 ASN 152 152 152 ASN ASN L . n B 2 153 ALA 153 153 153 ALA ALA L . n B 2 154 LEU 154 154 154 LEU LEU L . n B 2 155 GLN 155 155 155 GLN GLN L . n B 2 156 SER 156 156 156 SER SER L . n B 2 157 GLY 157 157 157 GLY GLY L . n B 2 158 ASN 158 158 158 ASN ASN L . n B 2 159 SER 159 159 159 SER SER L . n B 2 160 GLN 160 160 160 GLN GLN L . n B 2 161 GLU 161 161 161 GLU GLU L . n B 2 162 SER 162 162 162 SER SER L . n B 2 163 VAL 163 163 163 VAL VAL L . n B 2 164 THR 164 164 164 THR THR L . n B 2 165 GLU 165 165 165 GLU GLU L . n B 2 166 GLN 166 166 166 GLN GLN L . n B 2 167 ASP 167 167 167 ASP ASP L . n B 2 168 SER 168 168 168 SER SER L . n B 2 169 LYS 169 169 169 LYS LYS L . n B 2 170 ASP 170 170 170 ASP ASP L . n B 2 171 SER 171 171 171 SER SER L . n B 2 172 THR 172 172 172 THR THR L . n B 2 173 TYR 173 173 173 TYR TYR L . n B 2 174 SER 174 174 174 SER SER L . n B 2 175 LEU 175 175 175 LEU LEU L . n B 2 176 SER 176 176 176 SER SER L . n B 2 177 SER 177 177 177 SER SER L . n B 2 178 THR 178 178 178 THR THR L . n B 2 179 LEU 179 179 179 LEU LEU L . n B 2 180 THR 180 180 180 THR THR L . n B 2 181 LEU 181 181 181 LEU LEU L . n B 2 182 SER 182 182 182 SER SER L . n B 2 183 LYS 183 183 183 LYS LYS L . n B 2 184 ALA 184 184 184 ALA ALA L . n B 2 185 ASP 185 185 185 ASP ASP L . n B 2 186 TYR 186 186 186 TYR TYR L . n B 2 187 GLU 187 187 187 GLU GLU L . n B 2 188 LYS 188 188 188 LYS LYS L . n B 2 189 HIS 189 189 189 HIS HIS L . n B 2 190 LYS 190 190 190 LYS LYS L . n B 2 191 VAL 191 191 191 VAL VAL L . n B 2 192 TYR 192 192 192 TYR TYR L . n B 2 193 ALA 193 193 193 ALA ALA L . n B 2 194 CYS 194 194 194 CYS CYS L . n B 2 195 GLU 195 195 195 GLU GLU L . n B 2 196 VAL 196 196 196 VAL VAL L . n B 2 197 THR 197 197 197 THR THR L . n B 2 198 HIS 198 198 198 HIS HIS L . n B 2 199 GLN 199 199 199 GLN GLN L . n B 2 200 GLY 200 200 200 GLY GLY L . n B 2 201 LEU 201 201 201 LEU LEU L . n B 2 202 SER 202 202 202 SER SER L . n B 2 203 SER 203 203 203 SER SER L . n B 2 204 PRO 204 204 204 PRO PRO L . n B 2 205 VAL 205 205 205 VAL VAL L . n B 2 206 THR 206 206 206 THR THR L . n B 2 207 LYS 207 207 207 LYS LYS L . n B 2 208 SER 208 208 208 SER SER L . n B 2 209 PHE 209 209 209 PHE PHE L . n B 2 210 ASN 210 210 210 ASN ASN L . n B 2 211 ARG 211 211 211 ARG ARG L . n B 2 212 GLY 212 212 212 GLY GLY L . n B 2 213 GLU 213 213 213 GLU GLU L . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4620 ? 1 MORE -83 ? 1 'SSA (A^2)' 19480 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 OD1 ? B ASP 31 ? L ASP 31 ? 1_555 83.4 ? 2 OD1 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 OD1 ? B ASP 32 ? L ASP 32 ? 1_555 92.4 ? 3 OD1 ? B ASP 31 ? L ASP 31 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 OD1 ? B ASP 32 ? L ASP 32 ? 1_555 88.4 ? 4 OD1 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O25 ? J S1P . ? L S1P 401 ? 1_555 83.9 ? 5 OD1 ? B ASP 31 ? L ASP 31 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O25 ? J S1P . ? L S1P 401 ? 1_555 166.2 ? 6 OD1 ? B ASP 32 ? L ASP 32 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O25 ? J S1P . ? L S1P 401 ? 1_555 86.5 ? 7 OD1 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 501 ? 1_555 170.3 ? 8 OD1 ? B ASP 31 ? L ASP 31 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 501 ? 1_555 87.3 ? 9 OD1 ? B ASP 32 ? L ASP 32 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 501 ? 1_555 84.5 ? 10 O25 ? J S1P . ? L S1P 401 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 501 ? 1_555 105.0 ? 11 OD1 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 504 ? 1_555 87.0 ? 12 OD1 ? B ASP 31 ? L ASP 31 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 504 ? 1_555 89.4 ? 13 OD1 ? B ASP 32 ? L ASP 32 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 504 ? 1_555 177.8 ? 14 O25 ? J S1P . ? L S1P 401 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 504 ? 1_555 95.5 ? 15 O ? L HOH . ? L HOH 501 ? 1_555 CA ? C CA . ? L CA 301 ? 1_555 O ? L HOH . ? L HOH 504 ? 1_555 95.7 ? 16 OD2 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 OD2 ? B ASP 32 ? L ASP 32 ? 1_555 97.9 ? 17 OD2 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 OD2 ? B ASP 92 ? L ASP 92 ? 1_555 89.6 ? 18 OD2 ? B ASP 32 ? L ASP 32 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 OD2 ? B ASP 92 ? L ASP 92 ? 1_555 93.0 ? 19 OD2 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O25 ? J S1P . ? L S1P 401 ? 1_555 96.8 ? 20 OD2 ? B ASP 32 ? L ASP 32 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O25 ? J S1P . ? L S1P 401 ? 1_555 85.6 ? 21 OD2 ? B ASP 92 ? L ASP 92 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O25 ? J S1P . ? L S1P 401 ? 1_555 173.6 ? 22 OD2 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 502 ? 1_555 168.5 ? 23 OD2 ? B ASP 32 ? L ASP 32 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 502 ? 1_555 93.2 ? 24 OD2 ? B ASP 92 ? L ASP 92 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 502 ? 1_555 87.1 ? 25 O25 ? J S1P . ? L S1P 401 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 502 ? 1_555 86.7 ? 26 OD2 ? B ASP 30 ? L ASP 30 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 503 ? 1_555 82.9 ? 27 OD2 ? B ASP 32 ? L ASP 32 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 503 ? 1_555 170.0 ? 28 OD2 ? B ASP 92 ? L ASP 92 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 503 ? 1_555 97.0 ? 29 O25 ? J S1P . ? L S1P 401 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 503 ? 1_555 84.5 ? 30 O ? L HOH . ? L HOH 502 ? 1_555 CA ? D CA . ? L CA 302 ? 1_555 O ? L HOH . ? L HOH 503 ? 1_555 86.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-09-29 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 H _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 551 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 L _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 771 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 H _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 106 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 H _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 106 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 H _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 106 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 86.84 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation -26.26 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER H 127 ? ? -153.27 -158.27 2 1 SER H 132 ? ? -58.97 -77.40 3 1 ASP H 144 ? ? 64.24 61.14 4 1 LEU H 175 ? ? 15.65 114.65 5 1 SER H 187 ? ? -66.16 9.39 6 1 ASP L 30 ? ? 48.65 -123.23 7 1 GLU L 50 ? ? -38.88 133.73 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLN H 105 ? ? GLY H 106 ? ? 93.29 2 1 SER H 173 ? ? GLY H 174 ? ? -55.22 3 1 GLY H 174 ? ? LEU H 175 ? ? 55.37 4 1 SER H 188 ? ? LEU H 189 ? ? -53.25 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 'MAGNESIUM ION' MG 5 '(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' S1P 6 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 301 301 CA CA L . D 3 CA 1 302 302 CA CA L . E 4 MG 1 303 303 MG MG L . F 4 MG 1 304 304 MG MG L . G 4 MG 1 305 305 MG MG L . H 4 MG 1 306 306 MG MG L . I 4 MG 1 307 307 MG MG L . J 5 S1P 1 401 401 S1P S1P L . K 6 HOH 1 507 507 HOH HOH H . K 6 HOH 2 508 508 HOH HOH H . K 6 HOH 3 510 510 HOH HOH H . K 6 HOH 4 511 511 HOH HOH H . K 6 HOH 5 518 518 HOH HOH H . K 6 HOH 6 519 519 HOH HOH H . K 6 HOH 7 520 520 HOH HOH H . K 6 HOH 8 521 521 HOH HOH H . K 6 HOH 9 522 522 HOH HOH H . K 6 HOH 10 523 523 HOH HOH H . K 6 HOH 11 531 531 HOH HOH H . K 6 HOH 12 536 536 HOH HOH H . K 6 HOH 13 538 538 HOH HOH H . K 6 HOH 14 542 542 HOH HOH H . K 6 HOH 15 545 545 HOH HOH H . K 6 HOH 16 551 551 HOH HOH H . K 6 HOH 17 557 557 HOH HOH H . K 6 HOH 18 559 559 HOH HOH H . K 6 HOH 19 560 560 HOH HOH H . K 6 HOH 20 562 562 HOH HOH H . K 6 HOH 21 566 566 HOH HOH H . K 6 HOH 22 567 567 HOH HOH H . K 6 HOH 23 568 568 HOH HOH H . K 6 HOH 24 569 569 HOH HOH H . K 6 HOH 25 570 570 HOH HOH H . K 6 HOH 26 571 571 HOH HOH H . K 6 HOH 27 572 572 HOH HOH H . K 6 HOH 28 573 573 HOH HOH H . K 6 HOH 29 574 574 HOH HOH H . K 6 HOH 30 575 575 HOH HOH H . K 6 HOH 31 576 576 HOH HOH H . K 6 HOH 32 577 577 HOH HOH H . K 6 HOH 33 578 578 HOH HOH H . K 6 HOH 34 579 579 HOH HOH H . K 6 HOH 35 585 585 HOH HOH H . K 6 HOH 36 586 586 HOH HOH H . K 6 HOH 37 587 587 HOH HOH H . K 6 HOH 38 588 588 HOH HOH H . K 6 HOH 39 589 589 HOH HOH H . K 6 HOH 40 590 590 HOH HOH H . K 6 HOH 41 591 591 HOH HOH H . K 6 HOH 42 592 592 HOH HOH H . K 6 HOH 43 593 593 HOH HOH H . K 6 HOH 44 594 594 HOH HOH H . K 6 HOH 45 595 595 HOH HOH H . K 6 HOH 46 598 598 HOH HOH H . K 6 HOH 47 599 599 HOH HOH H . K 6 HOH 48 602 602 HOH HOH H . K 6 HOH 49 603 603 HOH HOH H . K 6 HOH 50 605 605 HOH HOH H . K 6 HOH 51 607 607 HOH HOH H . K 6 HOH 52 608 608 HOH HOH H . K 6 HOH 53 609 609 HOH HOH H . K 6 HOH 54 610 610 HOH HOH H . K 6 HOH 55 611 611 HOH HOH H . K 6 HOH 56 612 612 HOH HOH H . K 6 HOH 57 613 613 HOH HOH H . K 6 HOH 58 614 614 HOH HOH H . K 6 HOH 59 615 615 HOH HOH H . K 6 HOH 60 618 618 HOH HOH H . K 6 HOH 61 619 619 HOH HOH H . K 6 HOH 62 620 620 HOH HOH H . K 6 HOH 63 621 621 HOH HOH H . K 6 HOH 64 622 622 HOH HOH H . K 6 HOH 65 623 623 HOH HOH H . K 6 HOH 66 632 632 HOH HOH H . K 6 HOH 67 640 640 HOH HOH H . K 6 HOH 68 643 643 HOH HOH H . K 6 HOH 69 645 645 HOH HOH H . K 6 HOH 70 650 650 HOH HOH H . K 6 HOH 71 651 651 HOH HOH H . K 6 HOH 72 652 652 HOH HOH H . K 6 HOH 73 653 653 HOH HOH H . K 6 HOH 74 654 654 HOH HOH H . K 6 HOH 75 661 661 HOH HOH H . K 6 HOH 76 663 663 HOH HOH H . K 6 HOH 77 668 668 HOH HOH H . K 6 HOH 78 669 669 HOH HOH H . K 6 HOH 79 670 670 HOH HOH H . K 6 HOH 80 671 671 HOH HOH H . K 6 HOH 81 672 672 HOH HOH H . K 6 HOH 82 673 673 HOH HOH H . K 6 HOH 83 674 674 HOH HOH H . K 6 HOH 84 675 675 HOH HOH H . K 6 HOH 85 676 676 HOH HOH H . K 6 HOH 86 677 677 HOH HOH H . K 6 HOH 87 678 678 HOH HOH H . K 6 HOH 88 679 679 HOH HOH H . K 6 HOH 89 680 680 HOH HOH H . K 6 HOH 90 684 684 HOH HOH H . K 6 HOH 91 687 687 HOH HOH H . K 6 HOH 92 689 689 HOH HOH H . K 6 HOH 93 700 700 HOH HOH H . K 6 HOH 94 701 701 HOH HOH H . K 6 HOH 95 702 702 HOH HOH H . K 6 HOH 96 703 703 HOH HOH H . K 6 HOH 97 704 704 HOH HOH H . K 6 HOH 98 705 705 HOH HOH H . K 6 HOH 99 709 709 HOH HOH H . K 6 HOH 100 713 713 HOH HOH H . K 6 HOH 101 714 714 HOH HOH H . K 6 HOH 102 716 716 HOH HOH H . K 6 HOH 103 722 722 HOH HOH H . K 6 HOH 104 724 724 HOH HOH H . K 6 HOH 105 725 725 HOH HOH H . K 6 HOH 106 733 733 HOH HOH H . K 6 HOH 107 734 734 HOH HOH H . K 6 HOH 108 736 736 HOH HOH H . K 6 HOH 109 737 737 HOH HOH H . K 6 HOH 110 739 739 HOH HOH H . K 6 HOH 111 741 741 HOH HOH H . K 6 HOH 112 743 743 HOH HOH H . K 6 HOH 113 744 744 HOH HOH H . K 6 HOH 114 745 745 HOH HOH H . K 6 HOH 115 747 747 HOH HOH H . K 6 HOH 116 748 748 HOH HOH H . K 6 HOH 117 749 749 HOH HOH H . K 6 HOH 118 751 751 HOH HOH H . K 6 HOH 119 752 752 HOH HOH H . K 6 HOH 120 753 753 HOH HOH H . K 6 HOH 121 756 756 HOH HOH H . K 6 HOH 122 757 757 HOH HOH H . K 6 HOH 123 759 759 HOH HOH H . K 6 HOH 124 760 760 HOH HOH H . K 6 HOH 125 761 761 HOH HOH H . K 6 HOH 126 762 762 HOH HOH H . K 6 HOH 127 763 763 HOH HOH H . K 6 HOH 128 764 764 HOH HOH H . K 6 HOH 129 769 769 HOH HOH H . K 6 HOH 130 770 770 HOH HOH H . K 6 HOH 131 772 772 HOH HOH H . K 6 HOH 132 773 773 HOH HOH H . K 6 HOH 133 774 774 HOH HOH H . K 6 HOH 134 775 775 HOH HOH H . K 6 HOH 135 777 777 HOH HOH H . K 6 HOH 136 778 778 HOH HOH H . K 6 HOH 137 779 779 HOH HOH H . K 6 HOH 138 780 780 HOH HOH H . K 6 HOH 139 783 783 HOH HOH H . L 6 HOH 1 501 501 HOH HOH L . L 6 HOH 2 502 502 HOH HOH L . L 6 HOH 3 503 503 HOH HOH L . L 6 HOH 4 504 504 HOH HOH L . L 6 HOH 5 505 505 HOH HOH L . L 6 HOH 6 506 506 HOH HOH L . L 6 HOH 7 509 509 HOH HOH L . L 6 HOH 8 512 512 HOH HOH L . L 6 HOH 9 513 513 HOH HOH L . L 6 HOH 10 514 514 HOH HOH L . L 6 HOH 11 515 515 HOH HOH L . L 6 HOH 12 516 516 HOH HOH L . L 6 HOH 13 517 517 HOH HOH L . L 6 HOH 14 524 524 HOH HOH L . L 6 HOH 15 525 525 HOH HOH L . L 6 HOH 16 526 526 HOH HOH L . L 6 HOH 17 527 527 HOH HOH L . L 6 HOH 18 528 528 HOH HOH L . L 6 HOH 19 529 529 HOH HOH L . L 6 HOH 20 530 530 HOH HOH L . L 6 HOH 21 532 532 HOH HOH L . L 6 HOH 22 533 533 HOH HOH L . L 6 HOH 23 534 534 HOH HOH L . L 6 HOH 24 535 535 HOH HOH L . L 6 HOH 25 537 537 HOH HOH L . L 6 HOH 26 539 539 HOH HOH L . L 6 HOH 27 540 540 HOH HOH L . L 6 HOH 28 541 541 HOH HOH L . L 6 HOH 29 543 543 HOH HOH L . L 6 HOH 30 544 544 HOH HOH L . L 6 HOH 31 546 546 HOH HOH L . L 6 HOH 32 547 547 HOH HOH L . L 6 HOH 33 548 548 HOH HOH L . L 6 HOH 34 549 549 HOH HOH L . L 6 HOH 35 550 550 HOH HOH L . L 6 HOH 36 552 552 HOH HOH L . L 6 HOH 37 553 553 HOH HOH L . L 6 HOH 38 554 554 HOH HOH L . L 6 HOH 39 555 555 HOH HOH L . L 6 HOH 40 556 556 HOH HOH L . L 6 HOH 41 558 558 HOH HOH L . L 6 HOH 42 561 561 HOH HOH L . L 6 HOH 43 563 563 HOH HOH L . L 6 HOH 44 564 564 HOH HOH L . L 6 HOH 45 565 565 HOH HOH L . L 6 HOH 46 580 580 HOH HOH L . L 6 HOH 47 581 581 HOH HOH L . L 6 HOH 48 582 582 HOH HOH L . L 6 HOH 49 583 583 HOH HOH L . L 6 HOH 50 584 584 HOH HOH L . L 6 HOH 51 596 596 HOH HOH L . L 6 HOH 52 597 597 HOH HOH L . L 6 HOH 53 600 600 HOH HOH L . L 6 HOH 54 601 601 HOH HOH L . L 6 HOH 55 604 604 HOH HOH L . L 6 HOH 56 606 606 HOH HOH L . L 6 HOH 57 616 616 HOH HOH L . L 6 HOH 58 617 617 HOH HOH L . L 6 HOH 59 624 624 HOH HOH L . L 6 HOH 60 625 625 HOH HOH L . L 6 HOH 61 626 626 HOH HOH L . L 6 HOH 62 627 627 HOH HOH L . L 6 HOH 63 628 628 HOH HOH L . L 6 HOH 64 629 629 HOH HOH L . L 6 HOH 65 630 630 HOH HOH L . L 6 HOH 66 631 631 HOH HOH L . L 6 HOH 67 633 633 HOH HOH L . L 6 HOH 68 634 634 HOH HOH L . L 6 HOH 69 635 635 HOH HOH L . L 6 HOH 70 636 636 HOH HOH L . L 6 HOH 71 637 637 HOH HOH L . L 6 HOH 72 638 638 HOH HOH L . L 6 HOH 73 639 639 HOH HOH L . L 6 HOH 74 641 641 HOH HOH L . L 6 HOH 75 642 642 HOH HOH L . L 6 HOH 76 644 644 HOH HOH L . L 6 HOH 77 646 646 HOH HOH L . L 6 HOH 78 647 647 HOH HOH L . L 6 HOH 79 648 648 HOH HOH L . L 6 HOH 80 649 649 HOH HOH L . L 6 HOH 81 655 655 HOH HOH L . L 6 HOH 82 656 656 HOH HOH L . L 6 HOH 83 657 657 HOH HOH L . L 6 HOH 84 658 658 HOH HOH L . L 6 HOH 85 659 659 HOH HOH L . L 6 HOH 86 660 660 HOH HOH L . L 6 HOH 87 662 662 HOH HOH L . L 6 HOH 88 664 664 HOH HOH L . L 6 HOH 89 665 665 HOH HOH L . L 6 HOH 90 666 666 HOH HOH L . L 6 HOH 91 667 667 HOH HOH L . L 6 HOH 92 681 681 HOH HOH L . L 6 HOH 93 682 682 HOH HOH L . L 6 HOH 94 683 683 HOH HOH L . L 6 HOH 95 685 685 HOH HOH L . L 6 HOH 96 686 686 HOH HOH L . L 6 HOH 97 688 688 HOH HOH L . L 6 HOH 98 690 690 HOH HOH L . L 6 HOH 99 691 691 HOH HOH L . L 6 HOH 100 692 692 HOH HOH L . L 6 HOH 101 693 693 HOH HOH L . L 6 HOH 102 694 694 HOH HOH L . L 6 HOH 103 695 695 HOH HOH L . L 6 HOH 104 696 696 HOH HOH L . L 6 HOH 105 697 697 HOH HOH L . L 6 HOH 106 698 698 HOH HOH L . L 6 HOH 107 699 699 HOH HOH L . L 6 HOH 108 706 706 HOH HOH L . L 6 HOH 109 707 707 HOH HOH L . L 6 HOH 110 708 708 HOH HOH L . L 6 HOH 111 710 710 HOH HOH L . L 6 HOH 112 711 711 HOH HOH L . L 6 HOH 113 712 712 HOH HOH L . L 6 HOH 114 715 715 HOH HOH L . L 6 HOH 115 717 717 HOH HOH L . L 6 HOH 116 718 718 HOH HOH L . L 6 HOH 117 719 719 HOH HOH L . L 6 HOH 118 720 720 HOH HOH L . L 6 HOH 119 721 721 HOH HOH L . L 6 HOH 120 723 723 HOH HOH L . L 6 HOH 121 726 726 HOH HOH L . L 6 HOH 122 727 727 HOH HOH L . L 6 HOH 123 728 728 HOH HOH L . L 6 HOH 124 729 729 HOH HOH L . L 6 HOH 125 730 730 HOH HOH L . L 6 HOH 126 731 731 HOH HOH L . L 6 HOH 127 732 732 HOH HOH L . L 6 HOH 128 735 735 HOH HOH L . L 6 HOH 129 738 738 HOH HOH L . L 6 HOH 130 740 740 HOH HOH L . L 6 HOH 131 742 742 HOH HOH L . L 6 HOH 132 746 746 HOH HOH L . L 6 HOH 133 750 750 HOH HOH L . L 6 HOH 134 754 754 HOH HOH L . L 6 HOH 135 755 755 HOH HOH L . L 6 HOH 136 758 758 HOH HOH L . L 6 HOH 137 765 765 HOH HOH L . L 6 HOH 138 766 766 HOH HOH L . L 6 HOH 139 767 767 HOH HOH L . L 6 HOH 140 768 768 HOH HOH L . L 6 HOH 141 771 771 HOH HOH L . L 6 HOH 142 776 776 HOH HOH L . L 6 HOH 143 781 781 HOH HOH L . L 6 HOH 144 782 782 HOH HOH L . #