data_3IBW # _entry.id 3IBW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3IBW pdb_00003ibw 10.2210/pdb3ibw/pdb RCSB RCSB054219 ? ? WWPDB D_1000054219 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id CtR148A _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3IBW _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-07-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vorobiev, S.' 1 'Su, M.' 2 'Seetharaman, J.' 3 'Janjua, J.' 4 'Xiao, R.' 5 'Ciccosanti, C.' 6 'Wang, H.' 7 'Everett, J.K.' 8 'Nair, R.' 9 'Acton, T.B.' 10 'Rost, B.' 11 'Montelione, G.T.' 12 'Tong, L.' 13 'Hunt, J.F.' 14 'Northeast Structural Genomics Consortium (NESG)' 15 # _citation.id primary _citation.title 'Crystal Structure of the ACT domain from GTP pyrophosphokinase of Chlorobium tepidum.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vorobiev, S.' 1 ? primary 'Su, M.' 2 ? primary 'Seetharaman, J.' 3 ? primary 'Janjua, J.' 4 ? primary 'Xiao, R.' 5 ? primary 'Ciccosanti, C.' 6 ? primary 'Wang, H.' 7 ? primary 'Everett, J.K.' 8 ? primary 'Nair, R.' 9 ? primary 'Acton, T.B.' 10 ? primary 'Rost, B.' 11 ? primary 'Montelione, G.T.' 12 ? primary 'Tong, L.' 13 ? primary 'Hunt, J.F.' 14 ? # _cell.entry_id 3IBW _cell.length_a 64.306 _cell.length_b 64.306 _cell.length_c 93.963 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IBW _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTP pyrophosphokinase' 10238.252 2 2.7.6.5 I667N 'ACT domain' ? 2 water nat water 18.015 151 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)TDFLAGIRIVGEDKNG(MSE)TNQITGVISKFDTNIRTIVLNAKDGIFTCNL(MSE)IFVKNTDKLTTL(MSE)D KLRKVQGVFTVERLSNLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MTDFLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSN LEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier CtR148A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 THR n 1 3 ASP n 1 4 PHE n 1 5 LEU n 1 6 ALA n 1 7 GLY n 1 8 ILE n 1 9 ARG n 1 10 ILE n 1 11 VAL n 1 12 GLY n 1 13 GLU n 1 14 ASP n 1 15 LYS n 1 16 ASN n 1 17 GLY n 1 18 MSE n 1 19 THR n 1 20 ASN n 1 21 GLN n 1 22 ILE n 1 23 THR n 1 24 GLY n 1 25 VAL n 1 26 ILE n 1 27 SER n 1 28 LYS n 1 29 PHE n 1 30 ASP n 1 31 THR n 1 32 ASN n 1 33 ILE n 1 34 ARG n 1 35 THR n 1 36 ILE n 1 37 VAL n 1 38 LEU n 1 39 ASN n 1 40 ALA n 1 41 LYS n 1 42 ASP n 1 43 GLY n 1 44 ILE n 1 45 PHE n 1 46 THR n 1 47 CYS n 1 48 ASN n 1 49 LEU n 1 50 MSE n 1 51 ILE n 1 52 PHE n 1 53 VAL n 1 54 LYS n 1 55 ASN n 1 56 THR n 1 57 ASP n 1 58 LYS n 1 59 LEU n 1 60 THR n 1 61 THR n 1 62 LEU n 1 63 MSE n 1 64 ASP n 1 65 LYS n 1 66 LEU n 1 67 ARG n 1 68 LYS n 1 69 VAL n 1 70 GLN n 1 71 GLY n 1 72 VAL n 1 73 PHE n 1 74 THR n 1 75 VAL n 1 76 GLU n 1 77 ARG n 1 78 LEU n 1 79 SER n 1 80 ASN n 1 81 LEU n 1 82 GLU n 1 83 HIS n 1 84 HIS n 1 85 HIS n 1 86 HIS n 1 87 HIS n 1 88 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CT1545, relA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 49652/DSM 12025/TLS' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chlorobaculum tepidum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1097 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 21-23C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8KC80_CHLTE _struct_ref.pdbx_db_accession Q8KC80 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TDFLAGIRIVGEDKIGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSN _struct_ref.pdbx_align_begin 653 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3IBW A 2 ? 80 ? Q8KC80 653 ? 731 ? 653 731 2 1 3IBW B 2 ? 80 ? Q8KC80 653 ? 731 ? 653 731 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IBW MSE A 1 ? UNP Q8KC80 ? ? 'expression tag' 652 1 1 3IBW ASN A 16 ? UNP Q8KC80 ILE 667 'engineered mutation' 667 2 1 3IBW LEU A 81 ? UNP Q8KC80 ? ? 'expression tag' 732 3 1 3IBW GLU A 82 ? UNP Q8KC80 ? ? 'expression tag' 733 4 1 3IBW HIS A 83 ? UNP Q8KC80 ? ? 'expression tag' 734 5 1 3IBW HIS A 84 ? UNP Q8KC80 ? ? 'expression tag' 735 6 1 3IBW HIS A 85 ? UNP Q8KC80 ? ? 'expression tag' 736 7 1 3IBW HIS A 86 ? UNP Q8KC80 ? ? 'expression tag' 737 8 1 3IBW HIS A 87 ? UNP Q8KC80 ? ? 'expression tag' 738 9 1 3IBW HIS A 88 ? UNP Q8KC80 ? ? 'expression tag' 739 10 2 3IBW MSE B 1 ? UNP Q8KC80 ? ? 'expression tag' 652 11 2 3IBW ASN B 16 ? UNP Q8KC80 ILE 667 'engineered mutation' 667 12 2 3IBW LEU B 81 ? UNP Q8KC80 ? ? 'expression tag' 732 13 2 3IBW GLU B 82 ? UNP Q8KC80 ? ? 'expression tag' 733 14 2 3IBW HIS B 83 ? UNP Q8KC80 ? ? 'expression tag' 734 15 2 3IBW HIS B 84 ? UNP Q8KC80 ? ? 'expression tag' 735 16 2 3IBW HIS B 85 ? UNP Q8KC80 ? ? 'expression tag' 736 17 2 3IBW HIS B 86 ? UNP Q8KC80 ? ? 'expression tag' 737 18 2 3IBW HIS B 87 ? UNP Q8KC80 ? ? 'expression tag' 738 19 2 3IBW HIS B 88 ? UNP Q8KC80 ? ? 'expression tag' 739 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3IBW _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;20% PEG 8000, 0.17 ammonium phosphate, 0.085M cacodylic acid, 15% glycerol, pH 6.5 , VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2009-07-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97853 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_wavelength_list 0.97853 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C # _reflns.entry_id 3IBW _reflns.B_iso_Wilson_estimate 9.500 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.93 _reflns.d_resolution_low 50 _reflns.number_all 28314 _reflns.number_obs 28229 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 34.9 _reflns.pdbx_redundancy 8.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.93 _reflns_shell.d_res_low 1.96 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 96.9 _reflns_shell.Rmerge_I_obs 0.290 _reflns_shell.meanI_over_sigI_obs 9.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.number_unique_all 1410 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3IBW _refine.ls_d_res_high 1.930 _refine.ls_d_res_low 40.930 _refine.pdbx_ls_sigma_F 1.00 _refine.pdbx_data_cutoff_high_absF 89532.648 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 95.200 _refine.ls_number_reflns_obs 26944 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.192 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1343 _refine.ls_R_factor_R_free_error 0.005 _refine.B_iso_mean 22.500 _refine.solvent_model_param_bsol 57.350 _refine.solvent_model_param_ksol 0.400 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] 0.200 _refine.aniso_B[2][2] 0.200 _refine.aniso_B[3][3] -0.400 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.occupancy_max ? _refine.occupancy_min ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3IBW _refine_analyze.Luzzati_coordinate_error_obs 0.200 _refine_analyze.Luzzati_sigma_a_obs 0.070 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.200 _refine_analyze.Luzzati_sigma_a_free 0.090 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1206 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 151 _refine_hist.number_atoms_total 1357 _refine_hist.d_res_high 1.930 _refine_hist.d_res_low 40.930 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.007 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.300 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 25.000 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 0.840 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.930 _refine_ls_shell.d_res_low 2.050 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 87.800 _refine_ls_shell.number_reflns_R_work 3901 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.188 _refine_ls_shell.R_factor_R_free 0.181 _refine_ls_shell.percent_reflns_R_free 5.500 _refine_ls_shell.number_reflns_R_free 226 _refine_ls_shell.R_factor_R_free_error 0.012 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 4127 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 3IBW _struct.title ;Crystal Structure of the ACT domain from GTP pyrophosphokinase of Chlorobium tepidum. Northeast Structural Genomics Consortium Target CtR148A ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IBW _struct_keywords.text ;GTP pyrophosphokinase, ACT domain, kinase, transferase, NESG, CtR148A, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium ; _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'dimer according to aggregation screening' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 17 ? PHE A 29 ? GLY A 668 PHE A 680 1 ? 13 HELX_P HELX_P2 2 ASN A 55 ? LYS A 68 ? ASN A 706 LYS A 719 1 ? 14 HELX_P HELX_P3 3 GLY B 17 ? PHE B 29 ? GLY B 668 PHE B 680 1 ? 13 HELX_P HELX_P4 4 ASN B 55 ? LYS B 68 ? ASN B 706 LYS B 719 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 17 C ? ? ? 1_555 A MSE 18 N ? ? A GLY 668 A MSE 669 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 18 C ? ? ? 1_555 A THR 19 N ? ? A MSE 669 A THR 670 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A LEU 49 C ? ? ? 1_555 A MSE 50 N ? ? A LEU 700 A MSE 701 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 50 C ? ? ? 1_555 A ILE 51 N ? ? A MSE 701 A ILE 702 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A LEU 62 C ? ? ? 1_555 A MSE 63 N ? ? A LEU 713 A MSE 714 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A MSE 63 C ? ? ? 1_555 A ASP 64 N ? ? A MSE 714 A ASP 715 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale7 covale both ? B GLY 17 C ? ? ? 1_555 B MSE 18 N ? ? B GLY 668 B MSE 669 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? B MSE 18 C ? ? ? 1_555 B THR 19 N ? ? B MSE 669 B THR 670 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? B LEU 49 C ? ? ? 1_555 B MSE 50 N ? ? B LEU 700 B MSE 701 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale10 covale both ? B MSE 50 C ? ? ? 1_555 B ILE 51 N ? ? B MSE 701 B ILE 702 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? B LEU 62 C ? ? ? 1_555 B MSE 63 N ? ? B LEU 713 B MSE 714 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? B MSE 63 C ? ? ? 1_555 B ASP 64 N ? ? B MSE 714 B ASP 715 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 72 ? LEU A 78 ? VAL A 723 LEU A 729 A 2 PHE A 4 ? GLU A 13 ? PHE A 655 GLU A 664 A 3 ILE A 44 ? VAL A 53 ? ILE A 695 VAL A 704 A 4 ASN A 32 ? LYS A 41 ? ASN A 683 LYS A 692 A 5 ASN B 32 ? LYS B 41 ? ASN B 683 LYS B 692 A 6 ILE B 44 ? VAL B 53 ? ILE B 695 VAL B 704 A 7 PHE B 4 ? GLU B 13 ? PHE B 655 GLU B 664 A 8 VAL B 72 ? LEU B 78 ? VAL B 723 LEU B 729 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 76 ? O GLU A 727 N ARG A 9 ? N ARG A 660 A 2 3 N ILE A 8 ? N ILE A 659 O LEU A 49 ? O LEU A 700 A 3 4 O MSE A 50 ? O MSE A 701 N ARG A 34 ? N ARG A 685 A 4 5 N ILE A 36 ? N ILE A 687 O LEU B 38 ? O LEU B 689 A 5 6 N ARG B 34 ? N ARG B 685 O MSE B 50 ? O MSE B 701 A 6 7 O PHE B 45 ? O PHE B 696 N GLY B 12 ? N GLY B 663 A 7 8 N ARG B 9 ? N ARG B 660 O GLU B 76 ? O GLU B 727 # _database_PDB_matrix.entry_id 3IBW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3IBW _atom_sites.fract_transf_matrix[1][1] 0.015551 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015551 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010642 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 652 ? ? ? A . n A 1 2 THR 2 653 653 THR ALA A . n A 1 3 ASP 3 654 654 ASP ASP A . n A 1 4 PHE 4 655 655 PHE PHE A . n A 1 5 LEU 5 656 656 LEU LEU A . n A 1 6 ALA 6 657 657 ALA ALA A . n A 1 7 GLY 7 658 658 GLY GLY A . n A 1 8 ILE 8 659 659 ILE ILE A . n A 1 9 ARG 9 660 660 ARG ARG A . n A 1 10 ILE 10 661 661 ILE ILE A . n A 1 11 VAL 11 662 662 VAL VAL A . n A 1 12 GLY 12 663 663 GLY GLY A . n A 1 13 GLU 13 664 664 GLU GLU A . n A 1 14 ASP 14 665 665 ASP ASP A . n A 1 15 LYS 15 666 666 LYS LYS A . n A 1 16 ASN 16 667 667 ASN ASN A . n A 1 17 GLY 17 668 668 GLY GLY A . n A 1 18 MSE 18 669 669 MSE MSE A . n A 1 19 THR 19 670 670 THR THR A . n A 1 20 ASN 20 671 671 ASN ASN A . n A 1 21 GLN 21 672 672 GLN GLN A . n A 1 22 ILE 22 673 673 ILE ILE A . n A 1 23 THR 23 674 674 THR THR A . n A 1 24 GLY 24 675 675 GLY GLY A . n A 1 25 VAL 25 676 676 VAL VAL A . n A 1 26 ILE 26 677 677 ILE ILE A . n A 1 27 SER 27 678 678 SER SER A . n A 1 28 LYS 28 679 679 LYS LYS A . n A 1 29 PHE 29 680 680 PHE PHE A . n A 1 30 ASP 30 681 681 ASP ASP A . n A 1 31 THR 31 682 682 THR THR A . n A 1 32 ASN 32 683 683 ASN ASN A . n A 1 33 ILE 33 684 684 ILE ILE A . n A 1 34 ARG 34 685 685 ARG ARG A . n A 1 35 THR 35 686 686 THR THR A . n A 1 36 ILE 36 687 687 ILE ILE A . n A 1 37 VAL 37 688 688 VAL VAL A . n A 1 38 LEU 38 689 689 LEU LEU A . n A 1 39 ASN 39 690 690 ASN ASN A . n A 1 40 ALA 40 691 691 ALA ALA A . n A 1 41 LYS 41 692 692 LYS LYS A . n A 1 42 ASP 42 693 693 ASP ASP A . n A 1 43 GLY 43 694 694 GLY GLY A . n A 1 44 ILE 44 695 695 ILE ILE A . n A 1 45 PHE 45 696 696 PHE PHE A . n A 1 46 THR 46 697 697 THR THR A . n A 1 47 CYS 47 698 698 CYS CYS A . n A 1 48 ASN 48 699 699 ASN ASN A . n A 1 49 LEU 49 700 700 LEU LEU A . n A 1 50 MSE 50 701 701 MSE MSE A . n A 1 51 ILE 51 702 702 ILE ILE A . n A 1 52 PHE 52 703 703 PHE PHE A . n A 1 53 VAL 53 704 704 VAL VAL A . n A 1 54 LYS 54 705 705 LYS LYS A . n A 1 55 ASN 55 706 706 ASN ASN A . n A 1 56 THR 56 707 707 THR THR A . n A 1 57 ASP 57 708 708 ASP ASP A . n A 1 58 LYS 58 709 709 LYS LYS A . n A 1 59 LEU 59 710 710 LEU LEU A . n A 1 60 THR 60 711 711 THR THR A . n A 1 61 THR 61 712 712 THR THR A . n A 1 62 LEU 62 713 713 LEU LEU A . n A 1 63 MSE 63 714 714 MSE MSE A . n A 1 64 ASP 64 715 715 ASP ASP A . n A 1 65 LYS 65 716 716 LYS LYS A . n A 1 66 LEU 66 717 717 LEU LEU A . n A 1 67 ARG 67 718 718 ARG ARG A . n A 1 68 LYS 68 719 719 LYS LYS A . n A 1 69 VAL 69 720 720 VAL VAL A . n A 1 70 GLN 70 721 721 GLN GLN A . n A 1 71 GLY 71 722 722 GLY GLY A . n A 1 72 VAL 72 723 723 VAL VAL A . n A 1 73 PHE 73 724 724 PHE PHE A . n A 1 74 THR 74 725 725 THR THR A . n A 1 75 VAL 75 726 726 VAL VAL A . n A 1 76 GLU 76 727 727 GLU GLU A . n A 1 77 ARG 77 728 728 ARG ARG A . n A 1 78 LEU 78 729 729 LEU LEU A . n A 1 79 SER 79 730 730 SER SER A . n A 1 80 ASN 80 731 731 ASN ALA A . n A 1 81 LEU 81 732 ? ? ? A . n A 1 82 GLU 82 733 ? ? ? A . n A 1 83 HIS 83 734 ? ? ? A . n A 1 84 HIS 84 735 ? ? ? A . n A 1 85 HIS 85 736 ? ? ? A . n A 1 86 HIS 86 737 ? ? ? A . n A 1 87 HIS 87 738 ? ? ? A . n A 1 88 HIS 88 739 ? ? ? A . n B 1 1 MSE 1 652 ? ? ? B . n B 1 2 THR 2 653 653 THR ALA B . n B 1 3 ASP 3 654 654 ASP ASP B . n B 1 4 PHE 4 655 655 PHE PHE B . n B 1 5 LEU 5 656 656 LEU LEU B . n B 1 6 ALA 6 657 657 ALA ALA B . n B 1 7 GLY 7 658 658 GLY GLY B . n B 1 8 ILE 8 659 659 ILE ILE B . n B 1 9 ARG 9 660 660 ARG ARG B . n B 1 10 ILE 10 661 661 ILE ILE B . n B 1 11 VAL 11 662 662 VAL VAL B . n B 1 12 GLY 12 663 663 GLY GLY B . n B 1 13 GLU 13 664 664 GLU GLU B . n B 1 14 ASP 14 665 665 ASP ASP B . n B 1 15 LYS 15 666 666 LYS ALA B . n B 1 16 ASN 16 667 667 ASN ALA B . n B 1 17 GLY 17 668 668 GLY GLY B . n B 1 18 MSE 18 669 669 MSE MSE B . n B 1 19 THR 19 670 670 THR THR B . n B 1 20 ASN 20 671 671 ASN ASN B . n B 1 21 GLN 21 672 672 GLN GLN B . n B 1 22 ILE 22 673 673 ILE ILE B . n B 1 23 THR 23 674 674 THR THR B . n B 1 24 GLY 24 675 675 GLY GLY B . n B 1 25 VAL 25 676 676 VAL VAL B . n B 1 26 ILE 26 677 677 ILE ILE B . n B 1 27 SER 27 678 678 SER SER B . n B 1 28 LYS 28 679 679 LYS LYS B . n B 1 29 PHE 29 680 680 PHE PHE B . n B 1 30 ASP 30 681 681 ASP ASP B . n B 1 31 THR 31 682 682 THR THR B . n B 1 32 ASN 32 683 683 ASN ASN B . n B 1 33 ILE 33 684 684 ILE ILE B . n B 1 34 ARG 34 685 685 ARG ARG B . n B 1 35 THR 35 686 686 THR THR B . n B 1 36 ILE 36 687 687 ILE ILE B . n B 1 37 VAL 37 688 688 VAL VAL B . n B 1 38 LEU 38 689 689 LEU LEU B . n B 1 39 ASN 39 690 690 ASN ASN B . n B 1 40 ALA 40 691 691 ALA ALA B . n B 1 41 LYS 41 692 692 LYS LYS B . n B 1 42 ASP 42 693 693 ASP ASP B . n B 1 43 GLY 43 694 694 GLY GLY B . n B 1 44 ILE 44 695 695 ILE ILE B . n B 1 45 PHE 45 696 696 PHE PHE B . n B 1 46 THR 46 697 697 THR THR B . n B 1 47 CYS 47 698 698 CYS CYS B . n B 1 48 ASN 48 699 699 ASN ASN B . n B 1 49 LEU 49 700 700 LEU LEU B . n B 1 50 MSE 50 701 701 MSE MSE B . n B 1 51 ILE 51 702 702 ILE ILE B . n B 1 52 PHE 52 703 703 PHE PHE B . n B 1 53 VAL 53 704 704 VAL VAL B . n B 1 54 LYS 54 705 705 LYS LYS B . n B 1 55 ASN 55 706 706 ASN ASN B . n B 1 56 THR 56 707 707 THR THR B . n B 1 57 ASP 57 708 708 ASP ASP B . n B 1 58 LYS 58 709 709 LYS LYS B . n B 1 59 LEU 59 710 710 LEU LEU B . n B 1 60 THR 60 711 711 THR THR B . n B 1 61 THR 61 712 712 THR THR B . n B 1 62 LEU 62 713 713 LEU LEU B . n B 1 63 MSE 63 714 714 MSE MSE B . n B 1 64 ASP 64 715 715 ASP ASP B . n B 1 65 LYS 65 716 716 LYS LYS B . n B 1 66 LEU 66 717 717 LEU LEU B . n B 1 67 ARG 67 718 718 ARG ARG B . n B 1 68 LYS 68 719 719 LYS LYS B . n B 1 69 VAL 69 720 720 VAL VAL B . n B 1 70 GLN 70 721 721 GLN GLN B . n B 1 71 GLY 71 722 722 GLY GLY B . n B 1 72 VAL 72 723 723 VAL VAL B . n B 1 73 PHE 73 724 724 PHE PHE B . n B 1 74 THR 74 725 725 THR THR B . n B 1 75 VAL 75 726 726 VAL VAL B . n B 1 76 GLU 76 727 727 GLU GLU B . n B 1 77 ARG 77 728 728 ARG ARG B . n B 1 78 LEU 78 729 729 LEU LEU B . n B 1 79 SER 79 730 ? ? ? B . n B 1 80 ASN 80 731 ? ? ? B . n B 1 81 LEU 81 732 ? ? ? B . n B 1 82 GLU 82 733 ? ? ? B . n B 1 83 HIS 83 734 ? ? ? B . n B 1 84 HIS 84 735 ? ? ? B . n B 1 85 HIS 85 736 ? ? ? B . n B 1 86 HIS 86 737 ? ? ? B . n B 1 87 HIS 87 738 ? ? ? B . n B 1 88 HIS 88 739 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 802 802 HOH WAT A . C 2 HOH 2 808 808 HOH WAT A . C 2 HOH 3 809 809 HOH WAT A . C 2 HOH 4 810 810 HOH WAT A . C 2 HOH 5 813 813 HOH WAT A . C 2 HOH 6 815 815 HOH WAT A . C 2 HOH 7 816 816 HOH WAT A . C 2 HOH 8 817 817 HOH WAT A . C 2 HOH 9 819 819 HOH WAT A . C 2 HOH 10 823 823 HOH WAT A . C 2 HOH 11 825 825 HOH WAT A . C 2 HOH 12 826 826 HOH WAT A . C 2 HOH 13 827 827 HOH WAT A . C 2 HOH 14 828 828 HOH WAT A . C 2 HOH 15 829 829 HOH WAT A . C 2 HOH 16 832 832 HOH WAT A . C 2 HOH 17 833 833 HOH WAT A . C 2 HOH 18 834 834 HOH WAT A . C 2 HOH 19 840 840 HOH WAT A . C 2 HOH 20 841 841 HOH WAT A . C 2 HOH 21 842 842 HOH WAT A . C 2 HOH 22 844 844 HOH WAT A . C 2 HOH 23 852 852 HOH WAT A . C 2 HOH 24 854 854 HOH WAT A . C 2 HOH 25 855 855 HOH WAT A . C 2 HOH 26 863 863 HOH WAT A . C 2 HOH 27 865 865 HOH WAT A . C 2 HOH 28 866 866 HOH WAT A . C 2 HOH 29 868 868 HOH WAT A . C 2 HOH 30 869 869 HOH WAT A . C 2 HOH 31 870 870 HOH WAT A . C 2 HOH 32 872 872 HOH WAT A . C 2 HOH 33 875 875 HOH WAT A . C 2 HOH 34 879 879 HOH WAT A . C 2 HOH 35 882 882 HOH WAT A . C 2 HOH 36 884 884 HOH WAT A . C 2 HOH 37 886 886 HOH WAT A . C 2 HOH 38 887 887 HOH WAT A . C 2 HOH 39 889 889 HOH WAT A . C 2 HOH 40 890 890 HOH WAT A . C 2 HOH 41 893 893 HOH WAT A . C 2 HOH 42 897 897 HOH WAT A . C 2 HOH 43 899 899 HOH WAT A . C 2 HOH 44 908 908 HOH WAT A . C 2 HOH 45 909 909 HOH WAT A . C 2 HOH 46 910 910 HOH WAT A . C 2 HOH 47 915 915 HOH WAT A . C 2 HOH 48 916 916 HOH WAT A . C 2 HOH 49 920 920 HOH WAT A . C 2 HOH 50 923 923 HOH WAT A . C 2 HOH 51 926 926 HOH WAT A . C 2 HOH 52 927 927 HOH WAT A . C 2 HOH 53 928 928 HOH WAT A . C 2 HOH 54 935 935 HOH WAT A . C 2 HOH 55 937 937 HOH WAT A . C 2 HOH 56 938 938 HOH WAT A . C 2 HOH 57 939 939 HOH WAT A . C 2 HOH 58 943 943 HOH WAT A . C 2 HOH 59 945 945 HOH WAT A . C 2 HOH 60 946 946 HOH WAT A . C 2 HOH 61 951 951 HOH WAT A . C 2 HOH 62 952 952 HOH WAT A . C 2 HOH 63 953 953 HOH WAT A . D 2 HOH 1 801 801 HOH WAT B . D 2 HOH 2 803 803 HOH WAT B . D 2 HOH 3 804 804 HOH WAT B . D 2 HOH 4 805 805 HOH WAT B . D 2 HOH 5 806 806 HOH WAT B . D 2 HOH 6 807 807 HOH WAT B . D 2 HOH 7 811 811 HOH WAT B . D 2 HOH 8 812 812 HOH WAT B . D 2 HOH 9 814 814 HOH WAT B . D 2 HOH 10 818 818 HOH WAT B . D 2 HOH 11 820 820 HOH WAT B . D 2 HOH 12 821 821 HOH WAT B . D 2 HOH 13 822 822 HOH WAT B . D 2 HOH 14 824 824 HOH WAT B . D 2 HOH 15 830 830 HOH WAT B . D 2 HOH 16 831 831 HOH WAT B . D 2 HOH 17 835 835 HOH WAT B . D 2 HOH 18 836 836 HOH WAT B . D 2 HOH 19 837 837 HOH WAT B . D 2 HOH 20 838 838 HOH WAT B . D 2 HOH 21 839 839 HOH WAT B . D 2 HOH 22 843 843 HOH WAT B . D 2 HOH 23 845 845 HOH WAT B . D 2 HOH 24 846 846 HOH WAT B . D 2 HOH 25 847 847 HOH WAT B . D 2 HOH 26 848 848 HOH WAT B . D 2 HOH 27 849 849 HOH WAT B . D 2 HOH 28 850 850 HOH WAT B . D 2 HOH 29 851 851 HOH WAT B . D 2 HOH 30 853 853 HOH WAT B . D 2 HOH 31 856 856 HOH WAT B . D 2 HOH 32 857 857 HOH WAT B . D 2 HOH 33 858 858 HOH WAT B . D 2 HOH 34 859 859 HOH WAT B . D 2 HOH 35 860 860 HOH WAT B . D 2 HOH 36 861 861 HOH WAT B . D 2 HOH 37 862 862 HOH WAT B . D 2 HOH 38 867 867 HOH WAT B . D 2 HOH 39 871 871 HOH WAT B . D 2 HOH 40 873 873 HOH WAT B . D 2 HOH 41 874 874 HOH WAT B . D 2 HOH 42 876 876 HOH WAT B . D 2 HOH 43 877 877 HOH WAT B . D 2 HOH 44 878 878 HOH WAT B . D 2 HOH 45 880 880 HOH WAT B . D 2 HOH 46 881 881 HOH WAT B . D 2 HOH 47 883 883 HOH WAT B . D 2 HOH 48 885 885 HOH WAT B . D 2 HOH 49 888 888 HOH WAT B . D 2 HOH 50 891 891 HOH WAT B . D 2 HOH 51 892 892 HOH WAT B . D 2 HOH 52 894 894 HOH WAT B . D 2 HOH 53 896 896 HOH WAT B . D 2 HOH 54 898 898 HOH WAT B . D 2 HOH 55 900 900 HOH WAT B . D 2 HOH 56 901 901 HOH WAT B . D 2 HOH 57 902 902 HOH WAT B . D 2 HOH 58 903 903 HOH WAT B . D 2 HOH 59 904 904 HOH WAT B . D 2 HOH 60 905 905 HOH WAT B . D 2 HOH 61 906 906 HOH WAT B . D 2 HOH 62 907 907 HOH WAT B . D 2 HOH 63 911 911 HOH WAT B . D 2 HOH 64 912 912 HOH WAT B . D 2 HOH 65 913 913 HOH WAT B . D 2 HOH 66 914 914 HOH WAT B . D 2 HOH 67 917 917 HOH WAT B . D 2 HOH 68 918 918 HOH WAT B . D 2 HOH 69 919 919 HOH WAT B . D 2 HOH 70 921 921 HOH WAT B . D 2 HOH 71 922 922 HOH WAT B . D 2 HOH 72 924 924 HOH WAT B . D 2 HOH 73 925 925 HOH WAT B . D 2 HOH 74 929 929 HOH WAT B . D 2 HOH 75 930 930 HOH WAT B . D 2 HOH 76 931 931 HOH WAT B . D 2 HOH 77 932 932 HOH WAT B . D 2 HOH 78 933 933 HOH WAT B . D 2 HOH 79 934 934 HOH WAT B . D 2 HOH 80 936 936 HOH WAT B . D 2 HOH 81 940 940 HOH WAT B . D 2 HOH 82 941 941 HOH WAT B . D 2 HOH 83 942 942 HOH WAT B . D 2 HOH 84 944 944 HOH WAT B . D 2 HOH 85 947 947 HOH WAT B . D 2 HOH 86 948 948 HOH WAT B . D 2 HOH 87 949 949 HOH WAT B . D 2 HOH 88 950 950 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 18 A MSE 669 ? MET SELENOMETHIONINE 2 A MSE 50 A MSE 701 ? MET SELENOMETHIONINE 3 A MSE 63 A MSE 714 ? MET SELENOMETHIONINE 4 B MSE 18 B MSE 669 ? MET SELENOMETHIONINE 5 B MSE 50 B MSE 701 ? MET SELENOMETHIONINE 6 B MSE 63 B MSE 714 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1470 ? 1 MORE -0 ? 1 'SSA (A^2)' 7920 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2021-10-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.language' 5 4 'Structure model' '_software.location' 6 4 'Structure model' '_software.name' 7 4 'Structure model' '_software.type' 8 4 'Structure model' '_software.version' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS 1.2 ? ? ? ? refinement ? ? ? 1 PDB_EXTRACT 3.00 'March. 27, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 5 SnB . ? ? ? ? phasing ? ? ? 6 RESOLVE . ? ? ? ? phasing ? ? ? 7 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 8 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 653 ? OG1 ? A THR 2 OG1 2 1 Y 1 A THR 653 ? CG2 ? A THR 2 CG2 3 1 Y 1 A ASN 731 ? CG ? A ASN 80 CG 4 1 Y 1 A ASN 731 ? OD1 ? A ASN 80 OD1 5 1 Y 1 A ASN 731 ? ND2 ? A ASN 80 ND2 6 1 Y 1 B THR 653 ? OG1 ? B THR 2 OG1 7 1 Y 1 B THR 653 ? CG2 ? B THR 2 CG2 8 1 Y 1 B LYS 666 ? CG ? B LYS 15 CG 9 1 Y 1 B LYS 666 ? CD ? B LYS 15 CD 10 1 Y 1 B LYS 666 ? CE ? B LYS 15 CE 11 1 Y 1 B LYS 666 ? NZ ? B LYS 15 NZ 12 1 Y 1 B ASN 667 ? CG ? B ASN 16 CG 13 1 Y 1 B ASN 667 ? OD1 ? B ASN 16 OD1 14 1 Y 1 B ASN 667 ? ND2 ? B ASN 16 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 652 ? A MSE 1 2 1 Y 1 A LEU 732 ? A LEU 81 3 1 Y 1 A GLU 733 ? A GLU 82 4 1 Y 1 A HIS 734 ? A HIS 83 5 1 Y 1 A HIS 735 ? A HIS 84 6 1 Y 1 A HIS 736 ? A HIS 85 7 1 Y 1 A HIS 737 ? A HIS 86 8 1 Y 1 A HIS 738 ? A HIS 87 9 1 Y 1 A HIS 739 ? A HIS 88 10 1 Y 1 B MSE 652 ? B MSE 1 11 1 Y 1 B SER 730 ? B SER 79 12 1 Y 1 B ASN 731 ? B ASN 80 13 1 Y 1 B LEU 732 ? B LEU 81 14 1 Y 1 B GLU 733 ? B GLU 82 15 1 Y 1 B HIS 734 ? B HIS 83 16 1 Y 1 B HIS 735 ? B HIS 84 17 1 Y 1 B HIS 736 ? B HIS 85 18 1 Y 1 B HIS 737 ? B HIS 86 19 1 Y 1 B HIS 738 ? B HIS 87 20 1 Y 1 B HIS 739 ? B HIS 88 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? #