data_3IFT # _entry.id 3IFT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3IFT RCSB RCSB054356 WWPDB D_1000054356 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3hgb . unspecified TargetDB MytuD.01046.a . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3IFT _pdbx_database_status.recvd_initial_deposition_date 2009-07-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Edwards, T.E.' 1 ? 'Abendroth, J.' 2 ? 'Staker, B.' 3 ? 'Mayer, C.' 4 ? 'Phan, I.' 5 ? 'Kelley, A.' 6 ? 'Analau, E.' 7 ? 'Leibly, D.' 8 ? 'Rifkin, J.' 9 ? 'Loewen, R.' 10 ? 'Ruth, R.D.' 11 ? 'Stewart, L.J.' 12 ? 'Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)' 13 ? # _citation.id primary _citation.title ;X-ray structure determination of the glycine cleavage system protein H of Mycobacterium tuberculosis using an inverse Compton synchrotron X-ray source. ; _citation.journal_abbrev J.Struct.Funct.Genom. _citation.journal_volume 11 _citation.page_first 91 _citation.page_last 100 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1345-711X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20364333 _citation.pdbx_database_id_DOI 10.1007/s10969-010-9087-6 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Abendroth, J.' 1 primary 'McCormick, M.S.' 2 primary 'Edwards, T.E.' 3 primary 'Staker, B.' 4 primary 'Loewen, R.' 5 primary 'Gifford, M.' 6 primary 'Rifkin, J.' 7 primary 'Mayer, C.' 8 primary 'Guo, W.' 9 primary 'Zhang, Y.' 10 primary 'Myler, P.' 11 primary 'Kelley, A.' 12 primary 'Analau, E.' 13 primary 'Hewitt, S.N.' 14 primary 'Napuli, A.J.' 15 primary 'Kuhn, P.' 16 primary 'Ruth, R.D.' 17 primary 'Stewart, L.J.' 18 # _cell.entry_id 3IFT _cell.length_a 86.450 _cell.length_b 51.010 _cell.length_c 32.570 _cell.angle_alpha 90.00 _cell.angle_beta 95.10 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3IFT _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glycine cleavage system H protein' 15244.579 1 ? ? ? ? 2 water nat water 18.015 161 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHVSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYA PISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLTE ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHVSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYA PISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLTE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MytuD.01046.a # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 VAL n 1 10 SER n 1 11 ASP n 1 12 ILE n 1 13 PRO n 1 14 SER n 1 15 ASP n 1 16 LEU n 1 17 HIS n 1 18 TYR n 1 19 THR n 1 20 ALA n 1 21 GLU n 1 22 HIS n 1 23 GLU n 1 24 TRP n 1 25 ILE n 1 26 ARG n 1 27 ARG n 1 28 SER n 1 29 GLY n 1 30 ASP n 1 31 ASP n 1 32 THR n 1 33 VAL n 1 34 ARG n 1 35 VAL n 1 36 GLY n 1 37 ILE n 1 38 THR n 1 39 ASP n 1 40 TYR n 1 41 ALA n 1 42 GLN n 1 43 SER n 1 44 ALA n 1 45 LEU n 1 46 GLY n 1 47 ASP n 1 48 VAL n 1 49 VAL n 1 50 PHE n 1 51 VAL n 1 52 GLN n 1 53 LEU n 1 54 PRO n 1 55 VAL n 1 56 ILE n 1 57 GLY n 1 58 THR n 1 59 ALA n 1 60 VAL n 1 61 THR n 1 62 ALA n 1 63 GLY n 1 64 GLU n 1 65 THR n 1 66 PHE n 1 67 GLY n 1 68 GLU n 1 69 VAL n 1 70 GLU n 1 71 SER n 1 72 THR n 1 73 LYS n 1 74 SER n 1 75 VAL n 1 76 SER n 1 77 ASP n 1 78 LEU n 1 79 TYR n 1 80 ALA n 1 81 PRO n 1 82 ILE n 1 83 SER n 1 84 GLY n 1 85 LYS n 1 86 VAL n 1 87 SER n 1 88 GLU n 1 89 VAL n 1 90 ASN n 1 91 SER n 1 92 ASP n 1 93 LEU n 1 94 ASP n 1 95 GLY n 1 96 THR n 1 97 PRO n 1 98 GLN n 1 99 LEU n 1 100 VAL n 1 101 ASN n 1 102 SER n 1 103 ASP n 1 104 PRO n 1 105 TYR n 1 106 GLY n 1 107 ALA n 1 108 GLY n 1 109 TRP n 1 110 LEU n 1 111 LEU n 1 112 ASP n 1 113 ILE n 1 114 GLN n 1 115 VAL n 1 116 ASP n 1 117 SER n 1 118 SER n 1 119 ASP n 1 120 VAL n 1 121 ALA n 1 122 ALA n 1 123 LEU n 1 124 GLU n 1 125 SER n 1 126 ALA n 1 127 LEU n 1 128 THR n 1 129 THR n 1 130 LEU n 1 131 LEU n 1 132 ASP n 1 133 ALA n 1 134 GLU n 1 135 ALA n 1 136 TYR n 1 137 ARG n 1 138 GLY n 1 139 THR n 1 140 LEU n 1 141 THR n 1 142 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GCHV, gcvH, MT1874, MTCY1A11.17c, Rv1826' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain H37RV _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1773 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name AVA0421 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GCSH_MYCTU _struct_ref.pdbx_db_accession Q50607 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV NSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLTE ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3IFT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 10 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q50607 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 134 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 134 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3IFT MET A 1 ? UNP Q50607 ? ? 'expression tag' -7 1 1 3IFT ALA A 2 ? UNP Q50607 ? ? 'expression tag' -6 2 1 3IFT HIS A 3 ? UNP Q50607 ? ? 'expression tag' -5 3 1 3IFT HIS A 4 ? UNP Q50607 ? ? 'expression tag' -4 4 1 3IFT HIS A 5 ? UNP Q50607 ? ? 'expression tag' -3 5 1 3IFT HIS A 6 ? UNP Q50607 ? ? 'expression tag' -2 6 1 3IFT HIS A 7 ? UNP Q50607 ? ? 'expression tag' -1 7 1 3IFT HIS A 8 ? UNP Q50607 ? ? 'expression tag' 0 8 1 3IFT VAL A 9 ? UNP Q50607 ? ? 'expression tag' 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3IFT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_percent_sol 47.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details '1.5M SODIUM CITRATE, 50MM BISTRIS PH 6.3; MYTUD.01046.A AT 27MG/ML, , VAPOR DIFFUSION, SITTING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2009-07-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.81836 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type OTHER _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 0.81836 _diffrn_source.pdbx_wavelength_list 0.81836 # _reflns.entry_id 3IFT _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.000 _reflns.number_obs 9535 _reflns.number_all 9535 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.09500 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.1700 _reflns.B_iso_Wilson_estimate 21.39 _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.38500 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.200 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 710 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 3IFT _refine.ls_number_reflns_obs 9535 _refine.ls_number_reflns_all 9535 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 98.9 _refine.ls_R_factor_obs 0.185 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 459 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.903 _refine.B_iso_mean 12.01 _refine.aniso_B[1][1] -0.10000 _refine.aniso_B[2][2] 0.76000 _refine.aniso_B[3][3] -0.62000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.21000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE riding position' _refine.pdbx_starting_model 'pdb entry 3hgb' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.190 _refine.pdbx_overall_ESU_R_Free 0.185 _refine.overall_SU_ML 0.129 _refine.overall_SU_B 4.539 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 999 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 1160 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 1022 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 618 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.586 1.959 ? 1405 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.858 3.000 ? 1526 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.182 5.000 ? 137 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.103 25.581 ? 43 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.988 15.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24.186 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.076 0.200 ? 172 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1175 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 191 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.919 1.500 ? 676 'X-RAY DIFFRACTION' ? r_mcbond_other 0.211 1.500 ? 278 'X-RAY DIFFRACTION' ? r_mcangle_it 1.668 2.000 ? 1089 'X-RAY DIFFRACTION' ? r_scbond_it 2.352 3.000 ? 346 'X-RAY DIFFRACTION' ? r_scangle_it 3.677 4.500 ? 315 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 676 _refine_ls_shell.R_factor_R_work 0.2100 _refine_ls_shell.percent_reflns_obs 99.44 _refine_ls_shell.R_factor_R_free 0.3200 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 3IFT _struct.title 'Crystal structure of glycine cleavage system protein H from Mycobacterium tuberculosis, using X-rays from the Compact Light Source.' _struct.pdbx_descriptor 'Glycine cleavage system H protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3IFT _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;NIAID, DECODE, UW, SBRI, GLYCINE CLEAVAGE SYSTEM, Structural Genomics, PSI-2, Protein Structure Initiative, Accelerated Technologies Center for Gene to 3D Structure, ATCG3D, Seattle Structural Genomics Center for Infectious Disease, Lipoyl, methylamine binding protein, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 38 ? GLY A 46 ? THR A 30 GLY A 38 1 ? 9 HELX_P HELX_P2 2 SER A 91 ? GLY A 95 ? SER A 83 GLY A 87 5 ? 5 HELX_P HELX_P3 3 THR A 96 ? PRO A 97 ? THR A 88 PRO A 89 5 ? 2 HELX_P HELX_P4 4 GLN A 98 ? ASP A 103 ? GLN A 90 ASP A 95 1 ? 6 HELX_P HELX_P5 5 ALA A 122 ? LEU A 127 ? ALA A 114 LEU A 119 1 ? 6 HELX_P HELX_P6 6 THR A 128 ? LEU A 130 ? THR A 120 LEU A 122 5 ? 3 HELX_P HELX_P7 7 ASP A 132 ? LEU A 140 ? ASP A 124 LEU A 132 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 17 ? TYR A 18 ? HIS A 9 TYR A 10 A 2 GLU A 23 ? GLY A 29 ? GLU A 15 GLY A 21 A 3 THR A 32 ? ILE A 37 ? THR A 24 ILE A 29 A 4 LEU A 111 ? GLN A 114 ? LEU A 103 GLN A 106 A 5 GLY A 84 ? VAL A 89 ? GLY A 76 VAL A 81 A 6 ALA A 59 ? VAL A 60 ? ALA A 51 VAL A 52 B 1 VAL A 48 ? GLN A 52 ? VAL A 40 GLN A 44 B 2 THR A 65 ? SER A 71 ? THR A 57 SER A 63 B 3 VAL A 75 ? TYR A 79 ? VAL A 67 TYR A 71 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 17 ? N HIS A 9 O ILE A 25 ? O ILE A 17 A 2 3 N ARG A 26 ? N ARG A 18 O ARG A 34 ? O ARG A 26 A 3 4 N VAL A 35 ? N VAL A 27 O LEU A 111 ? O LEU A 103 A 4 5 O GLN A 114 ? O GLN A 106 N LYS A 85 ? N LYS A 77 A 5 6 O GLY A 84 ? O GLY A 76 N VAL A 60 ? N VAL A 52 B 1 2 N PHE A 50 ? N PHE A 42 O GLU A 70 ? O GLU A 62 B 2 3 N GLY A 67 ? N GLY A 59 O LEU A 78 ? O LEU A 70 # _database_PDB_matrix.entry_id 3IFT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3IFT _atom_sites.fract_transf_matrix[1][1] 0.011567 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001032 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019604 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030825 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -7 ? ? ? A . n A 1 2 ALA 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 ? ? ? A . n A 1 7 HIS 7 -1 -1 HIS HIS A . n A 1 8 HIS 8 0 0 HIS HIS A . n A 1 9 VAL 9 1 1 VAL VAL A . n A 1 10 SER 10 2 2 SER SER A . n A 1 11 ASP 11 3 3 ASP ASP A . n A 1 12 ILE 12 4 4 ILE ILE A . n A 1 13 PRO 13 5 5 PRO PRO A . n A 1 14 SER 14 6 6 SER SER A . n A 1 15 ASP 15 7 7 ASP ASP A . n A 1 16 LEU 16 8 8 LEU LEU A . n A 1 17 HIS 17 9 9 HIS HIS A . n A 1 18 TYR 18 10 10 TYR TYR A . n A 1 19 THR 19 11 11 THR THR A . n A 1 20 ALA 20 12 12 ALA ALA A . n A 1 21 GLU 21 13 13 GLU GLU A . n A 1 22 HIS 22 14 14 HIS HIS A . n A 1 23 GLU 23 15 15 GLU GLU A . n A 1 24 TRP 24 16 16 TRP TRP A . n A 1 25 ILE 25 17 17 ILE ILE A . n A 1 26 ARG 26 18 18 ARG ARG A . n A 1 27 ARG 27 19 19 ARG ARG A . n A 1 28 SER 28 20 20 SER SER A . n A 1 29 GLY 29 21 21 GLY GLY A . n A 1 30 ASP 30 22 22 ASP ASP A . n A 1 31 ASP 31 23 23 ASP ASP A . n A 1 32 THR 32 24 24 THR THR A . n A 1 33 VAL 33 25 25 VAL VAL A . n A 1 34 ARG 34 26 26 ARG ARG A . n A 1 35 VAL 35 27 27 VAL VAL A . n A 1 36 GLY 36 28 28 GLY GLY A . n A 1 37 ILE 37 29 29 ILE ILE A . n A 1 38 THR 38 30 30 THR THR A . n A 1 39 ASP 39 31 31 ASP ASP A . n A 1 40 TYR 40 32 32 TYR TYR A . n A 1 41 ALA 41 33 33 ALA ALA A . n A 1 42 GLN 42 34 34 GLN GLN A . n A 1 43 SER 43 35 35 SER SER A . n A 1 44 ALA 44 36 36 ALA ALA A . n A 1 45 LEU 45 37 37 LEU LEU A . n A 1 46 GLY 46 38 38 GLY GLY A . n A 1 47 ASP 47 39 39 ASP ASP A . n A 1 48 VAL 48 40 40 VAL VAL A . n A 1 49 VAL 49 41 41 VAL VAL A . n A 1 50 PHE 50 42 42 PHE PHE A . n A 1 51 VAL 51 43 43 VAL VAL A . n A 1 52 GLN 52 44 44 GLN GLN A . n A 1 53 LEU 53 45 45 LEU LEU A . n A 1 54 PRO 54 46 46 PRO PRO A . n A 1 55 VAL 55 47 47 VAL VAL A . n A 1 56 ILE 56 48 48 ILE ILE A . n A 1 57 GLY 57 49 49 GLY GLY A . n A 1 58 THR 58 50 50 THR THR A . n A 1 59 ALA 59 51 51 ALA ALA A . n A 1 60 VAL 60 52 52 VAL VAL A . n A 1 61 THR 61 53 53 THR THR A . n A 1 62 ALA 62 54 54 ALA ALA A . n A 1 63 GLY 63 55 55 GLY GLY A . n A 1 64 GLU 64 56 56 GLU GLU A . n A 1 65 THR 65 57 57 THR THR A . n A 1 66 PHE 66 58 58 PHE PHE A . n A 1 67 GLY 67 59 59 GLY GLY A . n A 1 68 GLU 68 60 60 GLU GLU A . n A 1 69 VAL 69 61 61 VAL VAL A . n A 1 70 GLU 70 62 62 GLU GLU A . n A 1 71 SER 71 63 63 SER SER A . n A 1 72 THR 72 64 64 THR THR A . n A 1 73 LYS 73 65 65 LYS LYS A . n A 1 74 SER 74 66 66 SER SER A . n A 1 75 VAL 75 67 67 VAL VAL A . n A 1 76 SER 76 68 68 SER SER A . n A 1 77 ASP 77 69 69 ASP ASP A . n A 1 78 LEU 78 70 70 LEU LEU A . n A 1 79 TYR 79 71 71 TYR TYR A . n A 1 80 ALA 80 72 72 ALA ALA A . n A 1 81 PRO 81 73 73 PRO PRO A . n A 1 82 ILE 82 74 74 ILE ILE A . n A 1 83 SER 83 75 75 SER SER A . n A 1 84 GLY 84 76 76 GLY GLY A . n A 1 85 LYS 85 77 77 LYS LYS A . n A 1 86 VAL 86 78 78 VAL VAL A . n A 1 87 SER 87 79 79 SER SER A . n A 1 88 GLU 88 80 80 GLU GLU A . n A 1 89 VAL 89 81 81 VAL VAL A . n A 1 90 ASN 90 82 82 ASN ASN A . n A 1 91 SER 91 83 83 SER SER A . n A 1 92 ASP 92 84 84 ASP ASP A . n A 1 93 LEU 93 85 85 LEU LEU A . n A 1 94 ASP 94 86 86 ASP ASP A . n A 1 95 GLY 95 87 87 GLY GLY A . n A 1 96 THR 96 88 88 THR THR A . n A 1 97 PRO 97 89 89 PRO PRO A . n A 1 98 GLN 98 90 90 GLN GLN A . n A 1 99 LEU 99 91 91 LEU LEU A . n A 1 100 VAL 100 92 92 VAL VAL A . n A 1 101 ASN 101 93 93 ASN ASN A . n A 1 102 SER 102 94 94 SER SER A . n A 1 103 ASP 103 95 95 ASP ASP A . n A 1 104 PRO 104 96 96 PRO PRO A . n A 1 105 TYR 105 97 97 TYR TYR A . n A 1 106 GLY 106 98 98 GLY GLY A . n A 1 107 ALA 107 99 99 ALA ALA A . n A 1 108 GLY 108 100 100 GLY GLY A . n A 1 109 TRP 109 101 101 TRP TRP A . n A 1 110 LEU 110 102 102 LEU LEU A . n A 1 111 LEU 111 103 103 LEU LEU A . n A 1 112 ASP 112 104 104 ASP ASP A . n A 1 113 ILE 113 105 105 ILE ILE A . n A 1 114 GLN 114 106 106 GLN GLN A . n A 1 115 VAL 115 107 107 VAL VAL A . n A 1 116 ASP 116 108 108 ASP ASP A . n A 1 117 SER 117 109 109 SER SER A . n A 1 118 SER 118 110 110 SER SER A . n A 1 119 ASP 119 111 111 ASP ASP A . n A 1 120 VAL 120 112 112 VAL VAL A . n A 1 121 ALA 121 113 113 ALA ALA A . n A 1 122 ALA 122 114 114 ALA ALA A . n A 1 123 LEU 123 115 115 LEU LEU A . n A 1 124 GLU 124 116 116 GLU GLU A . n A 1 125 SER 125 117 117 SER SER A . n A 1 126 ALA 126 118 118 ALA ALA A . n A 1 127 LEU 127 119 119 LEU LEU A . n A 1 128 THR 128 120 120 THR THR A . n A 1 129 THR 129 121 121 THR THR A . n A 1 130 LEU 130 122 122 LEU LEU A . n A 1 131 LEU 131 123 123 LEU LEU A . n A 1 132 ASP 132 124 124 ASP ASP A . n A 1 133 ALA 133 125 125 ALA ALA A . n A 1 134 GLU 134 126 126 GLU GLU A . n A 1 135 ALA 135 127 127 ALA ALA A . n A 1 136 TYR 136 128 128 TYR TYR A . n A 1 137 ARG 137 129 129 ARG ARG A . n A 1 138 GLY 138 130 130 GLY GLY A . n A 1 139 THR 139 131 131 THR THR A . n A 1 140 LEU 140 132 132 LEU LEU A . n A 1 141 THR 141 133 133 THR THR A . n A 1 142 GLU 142 134 134 GLU GLU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Accelerated Technologies Center for Gene to 3D Structure' _pdbx_SG_project.initial_of_center ATCG3D # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 135 1 HOH HOH A . B 2 HOH 2 136 2 HOH HOH A . B 2 HOH 3 137 3 HOH HOH A . B 2 HOH 4 138 138 HOH HOH A . B 2 HOH 5 139 139 HOH HOH A . B 2 HOH 6 140 140 HOH HOH A . B 2 HOH 7 141 141 HOH HOH A . B 2 HOH 8 142 4 HOH HOH A . B 2 HOH 9 143 143 HOH HOH A . B 2 HOH 10 144 5 HOH HOH A . B 2 HOH 11 145 145 HOH HOH A . B 2 HOH 12 146 146 HOH HOH A . B 2 HOH 13 147 6 HOH HOH A . B 2 HOH 14 148 7 HOH HOH A . B 2 HOH 15 149 149 HOH HOH A . B 2 HOH 16 150 150 HOH HOH A . B 2 HOH 17 151 151 HOH HOH A . B 2 HOH 18 152 152 HOH HOH A . B 2 HOH 19 153 153 HOH HOH A . B 2 HOH 20 154 154 HOH HOH A . B 2 HOH 21 155 155 HOH HOH A . B 2 HOH 22 156 156 HOH HOH A . B 2 HOH 23 157 157 HOH HOH A . B 2 HOH 24 158 158 HOH HOH A . B 2 HOH 25 159 159 HOH HOH A . B 2 HOH 26 160 160 HOH HOH A . B 2 HOH 27 161 161 HOH HOH A . B 2 HOH 28 162 8 HOH HOH A . B 2 HOH 29 163 163 HOH HOH A . B 2 HOH 30 164 164 HOH HOH A . B 2 HOH 31 165 165 HOH HOH A . B 2 HOH 32 166 166 HOH HOH A . B 2 HOH 33 167 167 HOH HOH A . B 2 HOH 34 168 168 HOH HOH A . B 2 HOH 35 169 169 HOH HOH A . B 2 HOH 36 170 170 HOH HOH A . B 2 HOH 37 171 171 HOH HOH A . B 2 HOH 38 172 172 HOH HOH A . B 2 HOH 39 173 173 HOH HOH A . B 2 HOH 40 174 174 HOH HOH A . B 2 HOH 41 175 175 HOH HOH A . B 2 HOH 42 176 176 HOH HOH A . B 2 HOH 43 177 177 HOH HOH A . B 2 HOH 44 178 10 HOH HOH A . B 2 HOH 45 179 179 HOH HOH A . B 2 HOH 46 180 180 HOH HOH A . B 2 HOH 47 181 11 HOH HOH A . B 2 HOH 48 182 182 HOH HOH A . B 2 HOH 49 183 12 HOH HOH A . B 2 HOH 50 184 184 HOH HOH A . B 2 HOH 51 185 185 HOH HOH A . B 2 HOH 52 186 186 HOH HOH A . B 2 HOH 53 187 187 HOH HOH A . B 2 HOH 54 188 188 HOH HOH A . B 2 HOH 55 189 189 HOH HOH A . B 2 HOH 56 190 190 HOH HOH A . B 2 HOH 57 191 191 HOH HOH A . B 2 HOH 58 192 192 HOH HOH A . B 2 HOH 59 193 193 HOH HOH A . B 2 HOH 60 194 194 HOH HOH A . B 2 HOH 61 195 195 HOH HOH A . B 2 HOH 62 196 196 HOH HOH A . B 2 HOH 63 197 197 HOH HOH A . B 2 HOH 64 198 198 HOH HOH A . B 2 HOH 65 199 199 HOH HOH A . B 2 HOH 66 200 200 HOH HOH A . B 2 HOH 67 201 13 HOH HOH A . B 2 HOH 68 202 14 HOH HOH A . B 2 HOH 69 203 15 HOH HOH A . B 2 HOH 70 204 16 HOH HOH A . B 2 HOH 71 205 17 HOH HOH A . B 2 HOH 72 206 18 HOH HOH A . B 2 HOH 73 207 19 HOH HOH A . B 2 HOH 74 208 20 HOH HOH A . B 2 HOH 75 209 21 HOH HOH A . B 2 HOH 76 210 22 HOH HOH A . B 2 HOH 77 211 23 HOH HOH A . B 2 HOH 78 212 24 HOH HOH A . B 2 HOH 79 213 25 HOH HOH A . B 2 HOH 80 214 26 HOH HOH A . B 2 HOH 81 215 27 HOH HOH A . B 2 HOH 82 216 28 HOH HOH A . B 2 HOH 83 217 29 HOH HOH A . B 2 HOH 84 218 30 HOH HOH A . B 2 HOH 85 219 31 HOH HOH A . B 2 HOH 86 220 32 HOH HOH A . B 2 HOH 87 221 33 HOH HOH A . B 2 HOH 88 222 34 HOH HOH A . B 2 HOH 89 223 35 HOH HOH A . B 2 HOH 90 224 36 HOH HOH A . B 2 HOH 91 225 37 HOH HOH A . B 2 HOH 92 226 38 HOH HOH A . B 2 HOH 93 227 39 HOH HOH A . B 2 HOH 94 228 40 HOH HOH A . B 2 HOH 95 229 41 HOH HOH A . B 2 HOH 96 230 42 HOH HOH A . B 2 HOH 97 231 43 HOH HOH A . B 2 HOH 98 232 44 HOH HOH A . B 2 HOH 99 233 45 HOH HOH A . B 2 HOH 100 234 47 HOH HOH A . B 2 HOH 101 235 48 HOH HOH A . B 2 HOH 102 236 49 HOH HOH A . B 2 HOH 103 237 52 HOH HOH A . B 2 HOH 104 238 53 HOH HOH A . B 2 HOH 105 239 54 HOH HOH A . B 2 HOH 106 240 55 HOH HOH A . B 2 HOH 107 241 56 HOH HOH A . B 2 HOH 108 242 57 HOH HOH A . B 2 HOH 109 243 58 HOH HOH A . B 2 HOH 110 244 59 HOH HOH A . B 2 HOH 111 245 60 HOH HOH A . B 2 HOH 112 246 61 HOH HOH A . B 2 HOH 113 247 62 HOH HOH A . B 2 HOH 114 248 63 HOH HOH A . B 2 HOH 115 249 64 HOH HOH A . B 2 HOH 116 250 65 HOH HOH A . B 2 HOH 117 251 66 HOH HOH A . B 2 HOH 118 252 67 HOH HOH A . B 2 HOH 119 253 69 HOH HOH A . B 2 HOH 120 254 70 HOH HOH A . B 2 HOH 121 255 71 HOH HOH A . B 2 HOH 122 256 72 HOH HOH A . B 2 HOH 123 257 73 HOH HOH A . B 2 HOH 124 258 74 HOH HOH A . B 2 HOH 125 259 75 HOH HOH A . B 2 HOH 126 260 76 HOH HOH A . B 2 HOH 127 261 78 HOH HOH A . B 2 HOH 128 262 79 HOH HOH A . B 2 HOH 129 263 80 HOH HOH A . B 2 HOH 130 264 81 HOH HOH A . B 2 HOH 131 265 82 HOH HOH A . B 2 HOH 132 266 83 HOH HOH A . B 2 HOH 133 267 86 HOH HOH A . B 2 HOH 134 268 89 HOH HOH A . B 2 HOH 135 269 92 HOH HOH A . B 2 HOH 136 270 93 HOH HOH A . B 2 HOH 137 271 94 HOH HOH A . B 2 HOH 138 272 95 HOH HOH A . B 2 HOH 139 273 96 HOH HOH A . B 2 HOH 140 274 97 HOH HOH A . B 2 HOH 141 275 99 HOH HOH A . B 2 HOH 142 276 100 HOH HOH A . B 2 HOH 143 277 101 HOH HOH A . B 2 HOH 144 278 102 HOH HOH A . B 2 HOH 145 279 104 HOH HOH A . B 2 HOH 146 280 106 HOH HOH A . B 2 HOH 147 281 108 HOH HOH A . B 2 HOH 148 282 109 HOH HOH A . B 2 HOH 149 283 112 HOH HOH A . B 2 HOH 150 284 114 HOH HOH A . B 2 HOH 151 285 115 HOH HOH A . B 2 HOH 152 286 118 HOH HOH A . B 2 HOH 153 287 121 HOH HOH A . B 2 HOH 154 288 123 HOH HOH A . B 2 HOH 155 289 124 HOH HOH A . B 2 HOH 156 290 125 HOH HOH A . B 2 HOH 157 291 126 HOH HOH A . B 2 HOH 158 292 129 HOH HOH A . B 2 HOH 159 293 132 HOH HOH A . B 2 HOH 160 294 133 HOH HOH A . B 2 HOH 161 295 134 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1830 ? 2 MORE -6 ? 2 'SSA (A^2)' 11320 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-08-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-04-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_source # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_source.source' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language MOLREP phasing . ? 1 ? ? ? ? REFMAC refinement 5.5.0088 ? 2 ? ? ? ? XDS 'data reduction' . ? 3 ? ? ? ? XSCALE 'data scaling' . ? 4 ? ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 173 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 195 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 198 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 198 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 14 ? ? 77.43 36.30 2 1 SER A 109 ? ? -26.09 -52.46 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -1 ? CG ? A HIS 7 CG 2 1 Y 1 A HIS -1 ? ND1 ? A HIS 7 ND1 3 1 Y 1 A HIS -1 ? CD2 ? A HIS 7 CD2 4 1 Y 1 A HIS -1 ? CE1 ? A HIS 7 CE1 5 1 Y 1 A HIS -1 ? NE2 ? A HIS 7 NE2 6 1 Y 1 A HIS 0 ? CG ? A HIS 8 CG 7 1 Y 1 A HIS 0 ? ND1 ? A HIS 8 ND1 8 1 Y 1 A HIS 0 ? CD2 ? A HIS 8 CD2 9 1 Y 1 A HIS 0 ? CE1 ? A HIS 8 CE1 10 1 Y 1 A HIS 0 ? NE2 ? A HIS 8 NE2 11 1 Y 1 A LYS 77 ? CG ? A LYS 85 CG 12 1 Y 1 A LYS 77 ? CD ? A LYS 85 CD 13 1 Y 1 A LYS 77 ? CE ? A LYS 85 CE 14 1 Y 1 A LYS 77 ? NZ ? A LYS 85 NZ 15 1 Y 1 A GLU 116 ? CG ? A GLU 124 CG 16 1 Y 1 A GLU 116 ? CD ? A GLU 124 CD 17 1 Y 1 A GLU 116 ? OE1 ? A GLU 124 OE1 18 1 Y 1 A GLU 116 ? OE2 ? A GLU 124 OE2 19 1 Y 1 A GLU 134 ? CG ? A GLU 142 CG 20 1 Y 1 A GLU 134 ? CD ? A GLU 142 CD 21 1 Y 1 A GLU 134 ? OE1 ? A GLU 142 OE1 22 1 Y 1 A GLU 134 ? OE2 ? A GLU 142 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -7 ? A MET 1 2 1 Y 1 A ALA -6 ? A ALA 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A HIS -2 ? A HIS 6 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #