data_3JSV # _entry.id 3JSV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3JSV pdb_00003jsv 10.2210/pdb3jsv/pdb RCSB RCSB055116 ? ? WWPDB D_1000055116 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3F89 . unspecified PDB 2ZVO . unspecified PDB 2ZVN . unspecified PDB 3FX0 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3JSV _pdbx_database_status.recvd_initial_deposition_date 2009-09-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoshikawa, A.' 1 'Sato, Y.' 2 'Mimura, H.' 3 'Yamashita, M.' 4 'Yamagata, A.' 5 'Fukai, S.' 6 # _citation.id primary _citation.title 'Crystal structure of the NEMO ubiquitin-binding domain in complex with Lys 63-linked di-ubiquitin' _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 583 _citation.page_first 3317 _citation.page_last 3322 _citation.year 2009 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19766637 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2009.09.028 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoshikawa, A.' 1 ? primary 'Sato, Y.' 2 ? primary 'Yamashita, M.' 3 ? primary 'Mimura, H.' 4 ? primary 'Yamagata, A.' 5 ? primary 'Fukai, S.' 6 ? # _cell.entry_id 3JSV _cell.length_a 55.380 _cell.length_b 45.870 _cell.length_c 83.290 _cell.angle_alpha 90.00 _cell.angle_beta 99.83 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3JSV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Ubiquitin 8604.845 1 ? K63R ? ? 2 polymer man Ubiquitin 8691.918 1 ? X77D ? ? 3 polymer man 'NF-kappa-B essential modulator' 11105.640 2 ? ? 'residues 250-343' ? 4 water nat water 18.015 26 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name ;NEMO, NF-kappa-B essential modifier, Inhibitor of nuclear factor kappa-B kinase subunit gamma, IkB kinase subunit gamma, I-kappa-B kinase gamma, IKK-gamma, IKKG, IkB kinase-associated protein 1, IKKAP1, mFIP-3 ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG A ? 2 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGD MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGD B ? 3 'polypeptide(L)' no no ;GMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL QREFNKLKVGCHES ; ;GMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL QREFNKLKVGCHES ; C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ILE n 1 4 PHE n 1 5 VAL n 1 6 LYS n 1 7 THR n 1 8 LEU n 1 9 THR n 1 10 GLY n 1 11 LYS n 1 12 THR n 1 13 ILE n 1 14 THR n 1 15 LEU n 1 16 GLU n 1 17 VAL n 1 18 GLU n 1 19 PRO n 1 20 SER n 1 21 ASP n 1 22 THR n 1 23 ILE n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 LYS n 1 28 ALA n 1 29 LYS n 1 30 ILE n 1 31 GLN n 1 32 ASP n 1 33 LYS n 1 34 GLU n 1 35 GLY n 1 36 ILE n 1 37 PRO n 1 38 PRO n 1 39 ASP n 1 40 GLN n 1 41 GLN n 1 42 ARG n 1 43 LEU n 1 44 ILE n 1 45 PHE n 1 46 ALA n 1 47 GLY n 1 48 LYS n 1 49 GLN n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 GLY n 1 54 ARG n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 ASP n 1 59 TYR n 1 60 ASN n 1 61 ILE n 1 62 GLN n 1 63 ARG n 1 64 GLU n 1 65 SER n 1 66 THR n 1 67 LEU n 1 68 HIS n 1 69 LEU n 1 70 VAL n 1 71 LEU n 1 72 ARG n 1 73 LEU n 1 74 ARG n 1 75 GLY n 1 76 GLY n 2 1 MET n 2 2 GLN n 2 3 ILE n 2 4 PHE n 2 5 VAL n 2 6 LYS n 2 7 THR n 2 8 LEU n 2 9 THR n 2 10 GLY n 2 11 LYS n 2 12 THR n 2 13 ILE n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 VAL n 2 18 GLU n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 THR n 2 23 ILE n 2 24 GLU n 2 25 ASN n 2 26 VAL n 2 27 LYS n 2 28 ALA n 2 29 LYS n 2 30 ILE n 2 31 GLN n 2 32 ASP n 2 33 LYS n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 PRO n 2 38 PRO n 2 39 ASP n 2 40 GLN n 2 41 GLN n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 PHE n 2 46 ALA n 2 47 GLY n 2 48 LYS n 2 49 GLN n 2 50 LEU n 2 51 GLU n 2 52 ASP n 2 53 GLY n 2 54 ARG n 2 55 THR n 2 56 LEU n 2 57 SER n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 ILE n 2 62 GLN n 2 63 LYS n 2 64 GLU n 2 65 SER n 2 66 THR n 2 67 LEU n 2 68 HIS n 2 69 LEU n 2 70 VAL n 2 71 LEU n 2 72 ARG n 2 73 LEU n 2 74 ARG n 2 75 GLY n 2 76 GLY n 2 77 ASP n 3 1 GLY n 3 2 MET n 3 3 GLN n 3 4 LEU n 3 5 GLU n 3 6 ASP n 3 7 LEU n 3 8 ARG n 3 9 GLN n 3 10 GLN n 3 11 LEU n 3 12 GLN n 3 13 GLN n 3 14 ALA n 3 15 GLU n 3 16 GLU n 3 17 ALA n 3 18 LEU n 3 19 VAL n 3 20 ALA n 3 21 LYS n 3 22 GLN n 3 23 GLU n 3 24 LEU n 3 25 ILE n 3 26 ASP n 3 27 LYS n 3 28 LEU n 3 29 LYS n 3 30 GLU n 3 31 GLU n 3 32 ALA n 3 33 GLU n 3 34 GLN n 3 35 HIS n 3 36 LYS n 3 37 ILE n 3 38 VAL n 3 39 MET n 3 40 GLU n 3 41 THR n 3 42 VAL n 3 43 PRO n 3 44 VAL n 3 45 LEU n 3 46 LYS n 3 47 ALA n 3 48 GLN n 3 49 ALA n 3 50 ASP n 3 51 ILE n 3 52 TYR n 3 53 LYS n 3 54 ALA n 3 55 ASP n 3 56 PHE n 3 57 GLN n 3 58 ALA n 3 59 GLU n 3 60 ARG n 3 61 HIS n 3 62 ALA n 3 63 ARG n 3 64 GLU n 3 65 LYS n 3 66 LEU n 3 67 VAL n 3 68 GLU n 3 69 LYS n 3 70 LYS n 3 71 GLU n 3 72 TYR n 3 73 LEU n 3 74 GLN n 3 75 GLU n 3 76 GLN n 3 77 LEU n 3 78 GLU n 3 79 GLN n 3 80 LEU n 3 81 GLN n 3 82 ARG n 3 83 GLU n 3 84 PHE n 3 85 ASN n 3 86 LYS n 3 87 LEU n 3 88 LYS n 3 89 VAL n 3 90 GLY n 3 91 CYS n 3 92 HIS n 3 93 GLU n 3 94 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'Rosetta(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET ? ? 2 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'Rosetta(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET ? ? 3 1 sample ? ? ? mouse ? 'Ikbkg, Nemo, NEMO(249-343)' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'Rosetta(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pCold ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UBIQ_HUMAN P62988 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 ? 2 UNP UBIQ_HUMAN P62988 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 ? 3 UNP NEMO_MOUSE O88522 3 ;GMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL QREFNKLKVGCHES ; 250 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3JSV A 1 ? 76 ? P62988 1 ? 76 ? 1 76 2 2 3JSV B 1 ? 76 ? P62988 1 ? 76 ? 1 76 3 3 3JSV C 1 ? 94 ? O88522 250 ? 343 ? 250 343 4 3 3JSV D 1 ? 94 ? O88522 250 ? 343 ? 250 343 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3JSV ARG A 63 ? UNP P62988 LYS 63 'engineered mutation' 63 1 2 3JSV ASP B 77 ? UNP P62988 ? ? 'engineered mutation' 77 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3JSV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_percent_sol 53.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details 'pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3JSV _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.7 _reflns.number_obs 11492 _reflns.number_all 11492 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.066 _reflns.pdbx_netI_over_sigmaI 14.2 _reflns.B_iso_Wilson_estimate 32.1 _reflns.pdbx_redundancy 31 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.216 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3JSV _refine.ls_number_reflns_obs 10739 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 110720.23 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.50 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 92.9 _refine.ls_R_factor_obs 0.250 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.250 _refine.ls_R_factor_R_free 0.294 _refine.ls_R_factor_R_free_error 0.013 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 549 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 82.1 _refine.aniso_B[1][1] -27.11 _refine.aniso_B[2][2] -9.47 _refine.aniso_B[3][3] 36.58 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -6.73 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.35 _refine.solvent_model_param_bsol 49.6733 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3JSV _refine_analyze.Luzzati_coordinate_error_obs 0.39 _refine_analyze.Luzzati_sigma_a_obs 0.53 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.47 _refine_analyze.Luzzati_sigma_a_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2626 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 26 _refine_hist.number_atoms_total 2652 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 49.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.73 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.34 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.26 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.66 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.67 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.87 _refine_ls_shell.number_reflns_R_work 1439 _refine_ls_shell.R_factor_R_work 0.349 _refine_ls_shell.percent_reflns_obs 79.4 _refine_ls_shell.R_factor_R_free 0.363 _refine_ls_shell.R_factor_R_free_error 0.041 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top # _struct.entry_id 3JSV _struct.title 'Crystal structure of mouse NEMO CoZi in complex with Lys63-linked di-ubiquitin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3JSV _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/TRANSCRIPTION' _struct_keywords.text ;ubiquitin, coiled-coil, cellular signaling, Cytoplasm, Isopeptide bond, Nucleus, Phosphoprotein, Ubl conjugation, Coiled coil, Disulfide bond, Metal-binding, Transcription, Transcription regulation, Zinc, Zinc-finger, SIGNALING PROTEIN-TRANSCRIPTION COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 22 ? GLY A 35 ? THR A 22 GLY A 35 1 ? 14 HELX_P HELX_P2 2 PRO A 37 ? ASP A 39 ? PRO A 37 ASP A 39 5 ? 3 HELX_P HELX_P3 3 LEU A 56 ? ASN A 60 ? LEU A 56 ASN A 60 5 ? 5 HELX_P HELX_P4 4 THR B 22 ? GLY B 35 ? THR B 22 GLY B 35 1 ? 14 HELX_P HELX_P5 5 PRO B 37 ? ASP B 39 ? PRO B 37 ASP B 39 5 ? 3 HELX_P HELX_P6 6 GLN C 3 ? LYS C 69 ? GLN C 252 LYS C 318 1 ? 67 HELX_P HELX_P7 7 GLU C 71 ? GLU C 83 ? GLU C 320 GLU C 332 1 ? 13 HELX_P HELX_P8 8 LEU D 7 ? GLU D 40 ? LEU D 256 GLU D 289 1 ? 34 HELX_P HELX_P9 9 THR D 41 ? LEU D 87 ? THR D 290 LEU D 336 1 ? 47 HELX_P HELX_P10 10 LEU D 87 ? HIS D 92 ? LEU D 336 HIS D 341 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 76 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 63 _struct_conn.ptnr2_label_atom_id NZ _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 76 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 63 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.332 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 12 ? GLU A 16 ? THR A 12 GLU A 16 A 2 GLN A 2 ? LYS A 6 ? GLN A 2 LYS A 6 A 3 THR A 66 ? LEU A 71 ? THR A 66 LEU A 71 A 4 GLN A 41 ? PHE A 45 ? GLN A 41 PHE A 45 A 5 LYS A 48 ? GLN A 49 ? LYS A 48 GLN A 49 B 1 THR B 12 ? GLU B 16 ? THR B 12 GLU B 16 B 2 GLN B 2 ? THR B 7 ? GLN B 2 THR B 7 B 3 THR B 66 ? LEU B 71 ? THR B 66 LEU B 71 B 4 GLN B 41 ? PHE B 45 ? GLN B 41 PHE B 45 B 5 LYS B 48 ? GLN B 49 ? LYS B 48 GLN B 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 15 ? O LEU A 15 N ILE A 3 ? N ILE A 3 A 2 3 N LYS A 6 ? N LYS A 6 O LEU A 69 ? O LEU A 69 A 3 4 O HIS A 68 ? O HIS A 68 N ILE A 44 ? N ILE A 44 A 4 5 N PHE A 45 ? N PHE A 45 O LYS A 48 ? O LYS A 48 B 1 2 O ILE B 13 ? O ILE B 13 N VAL B 5 ? N VAL B 5 B 2 3 N PHE B 4 ? N PHE B 4 O LEU B 67 ? O LEU B 67 B 3 4 O HIS B 68 ? O HIS B 68 N ILE B 44 ? N ILE B 44 B 4 5 N PHE B 45 ? N PHE B 45 O LYS B 48 ? O LYS B 48 # _database_PDB_matrix.entry_id 3JSV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3JSV _atom_sites.fract_transf_matrix[1][1] 0.018057 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003129 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021801 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012185 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLY 76 76 76 GLY GLY A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 ILE 3 3 3 ILE ILE B . n B 2 4 PHE 4 4 4 PHE PHE B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 LYS 6 6 6 LYS LYS B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 LEU 8 8 8 LEU LEU B . n B 2 9 THR 9 9 9 THR THR B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 ILE 13 13 13 ILE ILE B . n B 2 14 THR 14 14 14 THR THR B . n B 2 15 LEU 15 15 15 LEU LEU B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 VAL 17 17 17 VAL VAL B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 PRO 19 19 19 PRO PRO B . n B 2 20 SER 20 20 20 SER SER B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 THR 22 22 22 THR THR B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 GLU 24 24 24 GLU GLU B . n B 2 25 ASN 25 25 25 ASN ASN B . n B 2 26 VAL 26 26 26 VAL VAL B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 LYS 29 29 29 LYS LYS B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 GLN 31 31 31 GLN GLN B . n B 2 32 ASP 32 32 32 ASP ASP B . n B 2 33 LYS 33 33 33 LYS LYS B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 PRO 38 38 38 PRO PRO B . n B 2 39 ASP 39 39 39 ASP ASP B . n B 2 40 GLN 40 40 40 GLN GLN B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 ARG 42 42 42 ARG ARG B . n B 2 43 LEU 43 43 43 LEU LEU B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 PHE 45 45 45 PHE PHE B . n B 2 46 ALA 46 46 46 ALA ALA B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 LYS 48 48 48 LYS LYS B . n B 2 49 GLN 49 49 49 GLN GLN B . n B 2 50 LEU 50 50 50 LEU LEU B . n B 2 51 GLU 51 51 51 GLU GLU B . n B 2 52 ASP 52 52 52 ASP ASP B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ARG 54 54 54 ARG ARG B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 LYS 63 63 63 LYS LYS B . n B 2 64 GLU 64 64 64 GLU GLU B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 THR 66 66 66 THR THR B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 HIS 68 68 68 HIS HIS B . n B 2 69 LEU 69 69 69 LEU LEU B . n B 2 70 VAL 70 70 70 VAL VAL B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 ARG 72 72 72 ARG ARG B . n B 2 73 LEU 73 73 73 LEU LEU B . n B 2 74 ARG 74 74 74 ARG ARG B . n B 2 75 GLY 75 75 75 GLY GLY B . n B 2 76 GLY 76 76 76 GLY GLY B . n B 2 77 ASP 77 77 77 ASP ASP B . n C 3 1 GLY 1 250 ? ? ? C . n C 3 2 MET 2 251 ? ? ? C . n C 3 3 GLN 3 252 252 GLN GLN C . n C 3 4 LEU 4 253 253 LEU LEU C . n C 3 5 GLU 5 254 254 GLU GLU C . n C 3 6 ASP 6 255 255 ASP ASP C . n C 3 7 LEU 7 256 256 LEU LEU C . n C 3 8 ARG 8 257 257 ARG ARG C . n C 3 9 GLN 9 258 258 GLN GLN C . n C 3 10 GLN 10 259 259 GLN GLN C . n C 3 11 LEU 11 260 260 LEU LEU C . n C 3 12 GLN 12 261 261 GLN GLN C . n C 3 13 GLN 13 262 262 GLN GLN C . n C 3 14 ALA 14 263 263 ALA ALA C . n C 3 15 GLU 15 264 264 GLU GLU C . n C 3 16 GLU 16 265 265 GLU GLU C . n C 3 17 ALA 17 266 266 ALA ALA C . n C 3 18 LEU 18 267 267 LEU LEU C . n C 3 19 VAL 19 268 268 VAL VAL C . n C 3 20 ALA 20 269 269 ALA ALA C . n C 3 21 LYS 21 270 270 LYS LYS C . n C 3 22 GLN 22 271 271 GLN GLN C . n C 3 23 GLU 23 272 272 GLU GLU C . n C 3 24 LEU 24 273 273 LEU LEU C . n C 3 25 ILE 25 274 274 ILE ILE C . n C 3 26 ASP 26 275 275 ASP ASP C . n C 3 27 LYS 27 276 276 LYS LYS C . n C 3 28 LEU 28 277 277 LEU LEU C . n C 3 29 LYS 29 278 278 LYS LYS C . n C 3 30 GLU 30 279 279 GLU GLU C . n C 3 31 GLU 31 280 280 GLU GLU C . n C 3 32 ALA 32 281 281 ALA ALA C . n C 3 33 GLU 33 282 282 GLU GLU C . n C 3 34 GLN 34 283 283 GLN GLN C . n C 3 35 HIS 35 284 284 HIS HIS C . n C 3 36 LYS 36 285 285 LYS LYS C . n C 3 37 ILE 37 286 286 ILE ILE C . n C 3 38 VAL 38 287 287 VAL VAL C . n C 3 39 MET 39 288 288 MET MET C . n C 3 40 GLU 40 289 289 GLU GLU C . n C 3 41 THR 41 290 290 THR THR C . n C 3 42 VAL 42 291 291 VAL VAL C . n C 3 43 PRO 43 292 292 PRO PRO C . n C 3 44 VAL 44 293 293 VAL VAL C . n C 3 45 LEU 45 294 294 LEU LEU C . n C 3 46 LYS 46 295 295 LYS LYS C . n C 3 47 ALA 47 296 296 ALA ALA C . n C 3 48 GLN 48 297 297 GLN GLN C . n C 3 49 ALA 49 298 298 ALA ALA C . n C 3 50 ASP 50 299 299 ASP ASP C . n C 3 51 ILE 51 300 300 ILE ILE C . n C 3 52 TYR 52 301 301 TYR TYR C . n C 3 53 LYS 53 302 302 LYS LYS C . n C 3 54 ALA 54 303 303 ALA ALA C . n C 3 55 ASP 55 304 304 ASP ASP C . n C 3 56 PHE 56 305 305 PHE PHE C . n C 3 57 GLN 57 306 306 GLN GLN C . n C 3 58 ALA 58 307 307 ALA ALA C . n C 3 59 GLU 59 308 308 GLU GLU C . n C 3 60 ARG 60 309 309 ARG ARG C . n C 3 61 HIS 61 310 310 HIS HIS C . n C 3 62 ALA 62 311 311 ALA ALA C . n C 3 63 ARG 63 312 312 ARG ARG C . n C 3 64 GLU 64 313 313 GLU GLU C . n C 3 65 LYS 65 314 314 LYS LYS C . n C 3 66 LEU 66 315 315 LEU LEU C . n C 3 67 VAL 67 316 316 VAL VAL C . n C 3 68 GLU 68 317 317 GLU GLU C . n C 3 69 LYS 69 318 318 LYS LYS C . n C 3 70 LYS 70 319 319 LYS LYS C . n C 3 71 GLU 71 320 320 GLU GLU C . n C 3 72 TYR 72 321 321 TYR TYR C . n C 3 73 LEU 73 322 322 LEU LEU C . n C 3 74 GLN 74 323 323 GLN GLN C . n C 3 75 GLU 75 324 324 GLU GLU C . n C 3 76 GLN 76 325 325 GLN GLN C . n C 3 77 LEU 77 326 326 LEU LEU C . n C 3 78 GLU 78 327 327 GLU GLU C . n C 3 79 GLN 79 328 328 GLN GLN C . n C 3 80 LEU 80 329 329 LEU LEU C . n C 3 81 GLN 81 330 330 GLN GLN C . n C 3 82 ARG 82 331 331 ARG ARG C . n C 3 83 GLU 83 332 332 GLU GLU C . n C 3 84 PHE 84 333 333 PHE PHE C . n C 3 85 ASN 85 334 334 ASN ASN C . n C 3 86 LYS 86 335 ? ? ? C . n C 3 87 LEU 87 336 ? ? ? C . n C 3 88 LYS 88 337 ? ? ? C . n C 3 89 VAL 89 338 ? ? ? C . n C 3 90 GLY 90 339 ? ? ? C . n C 3 91 CYS 91 340 ? ? ? C . n C 3 92 HIS 92 341 ? ? ? C . n C 3 93 GLU 93 342 ? ? ? C . n C 3 94 SER 94 343 ? ? ? C . n D 3 1 GLY 1 250 ? ? ? D . n D 3 2 MET 2 251 ? ? ? D . n D 3 3 GLN 3 252 ? ? ? D . n D 3 4 LEU 4 253 ? ? ? D . n D 3 5 GLU 5 254 ? ? ? D . n D 3 6 ASP 6 255 ? ? ? D . n D 3 7 LEU 7 256 256 LEU LEU D . n D 3 8 ARG 8 257 257 ARG ARG D . n D 3 9 GLN 9 258 258 GLN GLN D . n D 3 10 GLN 10 259 259 GLN GLN D . n D 3 11 LEU 11 260 260 LEU LEU D . n D 3 12 GLN 12 261 261 GLN GLN D . n D 3 13 GLN 13 262 262 GLN GLN D . n D 3 14 ALA 14 263 263 ALA ALA D . n D 3 15 GLU 15 264 264 GLU GLU D . n D 3 16 GLU 16 265 265 GLU GLU D . n D 3 17 ALA 17 266 266 ALA ALA D . n D 3 18 LEU 18 267 267 LEU LEU D . n D 3 19 VAL 19 268 268 VAL VAL D . n D 3 20 ALA 20 269 269 ALA ALA D . n D 3 21 LYS 21 270 270 LYS LYS D . n D 3 22 GLN 22 271 271 GLN GLN D . n D 3 23 GLU 23 272 272 GLU GLU D . n D 3 24 LEU 24 273 273 LEU LEU D . n D 3 25 ILE 25 274 274 ILE ILE D . n D 3 26 ASP 26 275 275 ASP ASP D . n D 3 27 LYS 27 276 276 LYS LYS D . n D 3 28 LEU 28 277 277 LEU LEU D . n D 3 29 LYS 29 278 278 LYS LYS D . n D 3 30 GLU 30 279 279 GLU GLU D . n D 3 31 GLU 31 280 280 GLU GLU D . n D 3 32 ALA 32 281 281 ALA ALA D . n D 3 33 GLU 33 282 282 GLU GLU D . n D 3 34 GLN 34 283 283 GLN GLN D . n D 3 35 HIS 35 284 284 HIS HIS D . n D 3 36 LYS 36 285 285 LYS LYS D . n D 3 37 ILE 37 286 286 ILE ILE D . n D 3 38 VAL 38 287 287 VAL VAL D . n D 3 39 MET 39 288 288 MET MET D . n D 3 40 GLU 40 289 289 GLU GLU D . n D 3 41 THR 41 290 290 THR THR D . n D 3 42 VAL 42 291 291 VAL VAL D . n D 3 43 PRO 43 292 292 PRO PRO D . n D 3 44 VAL 44 293 293 VAL VAL D . n D 3 45 LEU 45 294 294 LEU LEU D . n D 3 46 LYS 46 295 295 LYS LYS D . n D 3 47 ALA 47 296 296 ALA ALA D . n D 3 48 GLN 48 297 297 GLN GLN D . n D 3 49 ALA 49 298 298 ALA ALA D . n D 3 50 ASP 50 299 299 ASP ASP D . n D 3 51 ILE 51 300 300 ILE ILE D . n D 3 52 TYR 52 301 301 TYR TYR D . n D 3 53 LYS 53 302 302 LYS LYS D . n D 3 54 ALA 54 303 303 ALA ALA D . n D 3 55 ASP 55 304 304 ASP ASP D . n D 3 56 PHE 56 305 305 PHE PHE D . n D 3 57 GLN 57 306 306 GLN GLN D . n D 3 58 ALA 58 307 307 ALA ALA D . n D 3 59 GLU 59 308 308 GLU GLU D . n D 3 60 ARG 60 309 309 ARG ARG D . n D 3 61 HIS 61 310 310 HIS HIS D . n D 3 62 ALA 62 311 311 ALA ALA D . n D 3 63 ARG 63 312 312 ARG ARG D . n D 3 64 GLU 64 313 313 GLU GLU D . n D 3 65 LYS 65 314 314 LYS LYS D . n D 3 66 LEU 66 315 315 LEU LEU D . n D 3 67 VAL 67 316 316 VAL VAL D . n D 3 68 GLU 68 317 317 GLU GLU D . n D 3 69 LYS 69 318 318 LYS LYS D . n D 3 70 LYS 70 319 319 LYS LYS D . n D 3 71 GLU 71 320 320 GLU GLU D . n D 3 72 TYR 72 321 321 TYR TYR D . n D 3 73 LEU 73 322 322 LEU LEU D . n D 3 74 GLN 74 323 323 GLN GLN D . n D 3 75 GLU 75 324 324 GLU GLU D . n D 3 76 GLN 76 325 325 GLN GLN D . n D 3 77 LEU 77 326 326 LEU LEU D . n D 3 78 GLU 78 327 327 GLU GLU D . n D 3 79 GLN 79 328 328 GLN GLN D . n D 3 80 LEU 80 329 329 LEU LEU D . n D 3 81 GLN 81 330 330 GLN GLN D . n D 3 82 ARG 82 331 331 ARG ARG D . n D 3 83 GLU 83 332 332 GLU GLU D . n D 3 84 PHE 84 333 333 PHE PHE D . n D 3 85 ASN 85 334 334 ASN ASN D . n D 3 86 LYS 86 335 335 LYS LYS D . n D 3 87 LEU 87 336 336 LEU LEU D . n D 3 88 LYS 88 337 337 LYS LYS D . n D 3 89 VAL 89 338 338 VAL VAL D . n D 3 90 GLY 90 339 339 GLY GLY D . n D 3 91 CYS 91 340 340 CYS CYS D . n D 3 92 HIS 92 341 341 HIS HIS D . n D 3 93 GLU 93 342 ? ? ? D . n D 3 94 SER 94 343 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 77 1 HOH TIP A . E 4 HOH 2 78 2 HOH TIP A . E 4 HOH 3 79 3 HOH TIP A . E 4 HOH 4 80 6 HOH TIP A . E 4 HOH 5 81 8 HOH TIP A . E 4 HOH 6 82 11 HOH TIP A . E 4 HOH 7 83 12 HOH TIP A . E 4 HOH 8 84 13 HOH TIP A . E 4 HOH 9 85 14 HOH TIP A . E 4 HOH 10 86 15 HOH TIP A . E 4 HOH 11 87 16 HOH TIP A . E 4 HOH 12 88 17 HOH TIP A . E 4 HOH 13 89 18 HOH TIP A . E 4 HOH 14 90 20 HOH TIP A . E 4 HOH 15 91 22 HOH TIP A . E 4 HOH 16 92 23 HOH TIP A . E 4 HOH 17 93 26 HOH TIP A . F 4 HOH 1 78 5 HOH TIP B . F 4 HOH 2 79 7 HOH TIP B . F 4 HOH 3 80 24 HOH TIP B . G 4 HOH 1 4 4 HOH TIP C . G 4 HOH 2 9 9 HOH TIP C . G 4 HOH 3 21 21 HOH TIP C . H 4 HOH 1 10 10 HOH TIP D . H 4 HOH 2 19 19 HOH TIP D . H 4 HOH 3 25 25 HOH TIP D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6880 ? 1 MORE -68.0 ? 1 'SSA (A^2)' 19800 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO B 19 ? ? -53.69 3.49 2 1 ARG B 54 ? ? -52.25 177.26 3 1 GLN B 62 ? ? -66.28 -172.87 4 1 ARG B 74 ? ? -43.35 -82.84 5 1 PHE C 333 ? ? -49.93 -72.49 6 1 GLU D 264 ? ? -79.77 -72.65 7 1 GLU D 289 ? ? -69.06 0.36 8 1 LEU D 315 ? ? -65.11 2.76 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C GLY 250 ? C GLY 1 2 1 Y 1 C MET 251 ? C MET 2 3 1 Y 1 C LYS 335 ? C LYS 86 4 1 Y 1 C LEU 336 ? C LEU 87 5 1 Y 1 C LYS 337 ? C LYS 88 6 1 Y 1 C VAL 338 ? C VAL 89 7 1 Y 1 C GLY 339 ? C GLY 90 8 1 Y 1 C CYS 340 ? C CYS 91 9 1 Y 1 C HIS 341 ? C HIS 92 10 1 Y 1 C GLU 342 ? C GLU 93 11 1 Y 1 C SER 343 ? C SER 94 12 1 Y 1 D GLY 250 ? D GLY 1 13 1 Y 1 D MET 251 ? D MET 2 14 1 Y 1 D GLN 252 ? D GLN 3 15 1 Y 1 D LEU 253 ? D LEU 4 16 1 Y 1 D GLU 254 ? D GLU 5 17 1 Y 1 D ASP 255 ? D ASP 6 18 1 Y 1 D GLU 342 ? D GLU 93 19 1 Y 1 D SER 343 ? D SER 94 # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #