data_3KDE # _entry.id 3KDE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KDE pdb_00003kde 10.2210/pdb3kde/pdb NDB NA0235 ? ? RCSB RCSB055851 ? ? WWPDB D_1000055851 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-02-01 4 'Structure model' 1 3 2012-03-21 5 'Structure model' 1 4 2021-10-13 6 'Structure model' 1 5 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' struct_conn 3 5 'Structure model' struct_ref_seq_dif 4 5 'Structure model' struct_site 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KDE _pdbx_database_status.recvd_initial_deposition_date 2009-10-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sabogal, A.' 1 'Lyubimov, A.Y.' 2 'Berger, J.M.' 3 'Rio, D.C.' 4 # _citation.id primary _citation.title 'THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 17 _citation.page_first 117 _citation.page_last 123 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20010837 _citation.pdbx_database_id_DOI 10.1038/nsmb.1742 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sabogal, A.' 1 ? primary 'Lyubimov, A.Y.' 2 ? primary 'Corn, J.E.' 3 ? primary 'Berger, J.M.' 4 ? primary 'Rio, D.C.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*TP*TP*AP*AP*GP*(BRU)P*GP*GP*A)-3'" 3188.934 1 ? ? ? "5'-GTTAAG(BRDU)GGA-3'" 2 polymer syn "5'-D(*(BRU)P*CP*CP*AP*CP*TP*TP*AP*AP*C)-3'" 3028.839 1 ? ? ? "5'-(BRDU)CCACTTAAC-3'" 3 polymer man 'Transposable element P transposase' 8686.256 1 ? ? 'THAP domain: UNP residues 1-77' ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 107 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'P-element transposase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DT)(DT)(DA)(DA)(DG)(BRU)(DG)(DG)(DA)' GTTAAGUGGA A ? 2 polydeoxyribonucleotide no yes '(BRU)(DC)(DC)(DA)(DC)(DT)(DT)(DA)(DA)(DC)' UCCACTTAAC B ? 3 'polypeptide(L)' no no MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKV MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKV C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DT n 1 4 DA n 1 5 DA n 1 6 DG n 1 7 BRU n 1 8 DG n 1 9 DG n 1 10 DA n 2 1 BRU n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DC n 2 6 DT n 2 7 DT n 2 8 DA n 2 9 DA n 2 10 DC n 3 1 MET n 3 2 LYS n 3 3 TYR n 3 4 CYS n 3 5 LYS n 3 6 PHE n 3 7 CYS n 3 8 CYS n 3 9 LYS n 3 10 ALA n 3 11 VAL n 3 12 THR n 3 13 GLY n 3 14 VAL n 3 15 LYS n 3 16 LEU n 3 17 ILE n 3 18 HIS n 3 19 VAL n 3 20 PRO n 3 21 LYS n 3 22 CYS n 3 23 ALA n 3 24 ILE n 3 25 LYS n 3 26 ARG n 3 27 LYS n 3 28 LEU n 3 29 TRP n 3 30 GLU n 3 31 GLN n 3 32 SER n 3 33 LEU n 3 34 GLY n 3 35 CYS n 3 36 SER n 3 37 LEU n 3 38 GLY n 3 39 GLU n 3 40 ASN n 3 41 SER n 3 42 GLN n 3 43 ILE n 3 44 CYS n 3 45 ASP n 3 46 THR n 3 47 HIS n 3 48 PHE n 3 49 ASN n 3 50 ASP n 3 51 SER n 3 52 GLN n 3 53 TRP n 3 54 LYS n 3 55 ALA n 3 56 ALA n 3 57 PRO n 3 58 ALA n 3 59 LYS n 3 60 GLY n 3 61 GLN n 3 62 THR n 3 63 PHE n 3 64 LYS n 3 65 ARG n 3 66 ARG n 3 67 ARG n 3 68 LEU n 3 69 ASN n 3 70 ALA n 3 71 ASP n 3 72 ALA n 3 73 VAL n 3 74 PRO n 3 75 SER n 3 76 LYS n 3 77 VAL n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene T _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Synthetic brominated ssDNA oligo' 2 1 sample ? ? ? ? ? 'Synthetic brominated ssDNA oligo' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 BRU 7 7 7 BRU BRU A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n B 2 1 BRU 1 11 11 BRU BRU B . n B 2 2 DC 2 12 12 DC CD B . n B 2 3 DC 3 13 13 DC CD B . n B 2 4 DA 4 14 14 DA DA B . n B 2 5 DC 5 15 15 DC CD B . n B 2 6 DT 6 16 16 DT DT B . n B 2 7 DT 7 17 17 DT DT B . n B 2 8 DA 8 18 18 DA DA B . n B 2 9 DA 9 19 19 DA DA B . n B 2 10 DC 10 20 20 DC CD B . n C 3 1 MET 1 1 1 MET MET C . n C 3 2 LYS 2 2 2 LYS LYS C . n C 3 3 TYR 3 3 3 TYR TYR C . n C 3 4 CYS 4 4 4 CYS CYS C . n C 3 5 LYS 5 5 5 LYS LYS C . n C 3 6 PHE 6 6 6 PHE PHE C . n C 3 7 CYS 7 7 7 CYS CYS C . n C 3 8 CYS 8 8 8 CYS CYS C . n C 3 9 LYS 9 9 9 LYS LYS C . n C 3 10 ALA 10 10 10 ALA ALA C . n C 3 11 VAL 11 11 11 VAL VAL C . n C 3 12 THR 12 12 12 THR THR C . n C 3 13 GLY 13 13 13 GLY GLY C . n C 3 14 VAL 14 14 14 VAL VAL C . n C 3 15 LYS 15 15 15 LYS LYS C . n C 3 16 LEU 16 16 16 LEU LEU C . n C 3 17 ILE 17 17 17 ILE ILE C . n C 3 18 HIS 18 18 18 HIS HIS C . n C 3 19 VAL 19 19 19 VAL VAL C . n C 3 20 PRO 20 20 20 PRO PRO C . n C 3 21 LYS 21 21 21 LYS LYS C . n C 3 22 CYS 22 22 22 CYS CYS C . n C 3 23 ALA 23 23 23 ALA ALA C . n C 3 24 ILE 24 24 24 ILE ILE C . n C 3 25 LYS 25 25 25 LYS LYS C . n C 3 26 ARG 26 26 26 ARG ARG C . n C 3 27 LYS 27 27 27 LYS LYS C . n C 3 28 LEU 28 28 28 LEU LEU C . n C 3 29 TRP 29 29 29 TRP TRP C . n C 3 30 GLU 30 30 30 GLU GLU C . n C 3 31 GLN 31 31 31 GLN GLN C . n C 3 32 SER 32 32 32 SER SER C . n C 3 33 LEU 33 33 33 LEU LEU C . n C 3 34 GLY 34 34 34 GLY GLY C . n C 3 35 CYS 35 35 35 CYS CYS C . n C 3 36 SER 36 36 36 SER SER C . n C 3 37 LEU 37 37 37 LEU LEU C . n C 3 38 GLY 38 38 38 GLY GLY C . n C 3 39 GLU 39 39 39 GLU GLU C . n C 3 40 ASN 40 40 40 ASN ASN C . n C 3 41 SER 41 41 41 SER SER C . n C 3 42 GLN 42 42 42 GLN GLN C . n C 3 43 ILE 43 43 43 ILE ILE C . n C 3 44 CYS 44 44 44 CYS CYS C . n C 3 45 ASP 45 45 45 ASP ASP C . n C 3 46 THR 46 46 46 THR THR C . n C 3 47 HIS 47 47 47 HIS HIS C . n C 3 48 PHE 48 48 48 PHE PHE C . n C 3 49 ASN 49 49 49 ASN ASN C . n C 3 50 ASP 50 50 50 ASP ASP C . n C 3 51 SER 51 51 51 SER SER C . n C 3 52 GLN 52 52 52 GLN GLN C . n C 3 53 TRP 53 53 53 TRP TRP C . n C 3 54 LYS 54 54 54 LYS LYS C . n C 3 55 ALA 55 55 55 ALA ALA C . n C 3 56 ALA 56 56 56 ALA ALA C . n C 3 57 PRO 57 57 ? ? ? C . n C 3 58 ALA 58 58 ? ? ? C . n C 3 59 LYS 59 59 59 LYS LYS C . n C 3 60 GLY 60 60 60 GLY GLY C . n C 3 61 GLN 61 61 61 GLN GLN C . n C 3 62 THR 62 62 62 THR THR C . n C 3 63 PHE 63 63 63 PHE PHE C . n C 3 64 LYS 64 64 64 LYS LYS C . n C 3 65 ARG 65 65 65 ARG ARG C . n C 3 66 ARG 66 66 66 ARG ARG C . n C 3 67 ARG 67 67 67 ARG ARG C . n C 3 68 LEU 68 68 68 LEU LEU C . n C 3 69 ASN 69 69 69 ASN ASN C . n C 3 70 ALA 70 70 70 ALA ALA C . n C 3 71 ASP 71 71 71 ASP ASP C . n C 3 72 ALA 72 72 72 ALA ALA C . n C 3 73 VAL 73 73 73 VAL VAL C . n C 3 74 PRO 74 74 74 PRO PRO C . n C 3 75 SER 75 75 75 SER SER C . n C 3 76 LYS 76 76 76 LYS LYS C . n C 3 77 VAL 77 77 77 VAL VAL C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 78 78 ZN ZN C . E 5 HOH 1 21 6 HOH HOH A . E 5 HOH 2 22 7 HOH HOH A . E 5 HOH 3 23 9 HOH HOH A . E 5 HOH 4 24 14 HOH HOH A . E 5 HOH 5 25 10 HOH HOH A . E 5 HOH 6 26 16 HOH HOH A . E 5 HOH 7 27 18 HOH HOH A . E 5 HOH 8 28 20 HOH HOH A . E 5 HOH 9 29 23 HOH HOH A . E 5 HOH 10 30 24 HOH HOH A . E 5 HOH 11 31 26 HOH HOH A . E 5 HOH 12 32 27 HOH HOH A . E 5 HOH 13 33 28 HOH HOH A . E 5 HOH 14 34 29 HOH HOH A . E 5 HOH 15 35 31 HOH HOH A . E 5 HOH 16 36 32 HOH HOH A . E 5 HOH 17 37 40 HOH HOH A . E 5 HOH 18 38 42 HOH HOH A . E 5 HOH 19 39 46 HOH HOH A . E 5 HOH 20 40 50 HOH HOH A . E 5 HOH 21 41 57 HOH HOH A . E 5 HOH 22 42 61 HOH HOH A . E 5 HOH 23 43 65 HOH HOH A . E 5 HOH 24 44 82 HOH HOH A . E 5 HOH 25 45 89 HOH HOH A . E 5 HOH 26 46 95 HOH HOH A . E 5 HOH 27 47 97 HOH HOH A . E 5 HOH 28 48 101 HOH HOH A . F 5 HOH 1 21 4 HOH HOH B . F 5 HOH 2 22 5 HOH HOH B . F 5 HOH 3 23 8 HOH HOH B . F 5 HOH 4 24 17 HOH HOH B . F 5 HOH 5 25 35 HOH HOH B . F 5 HOH 6 26 37 HOH HOH B . F 5 HOH 7 27 43 HOH HOH B . F 5 HOH 8 28 44 HOH HOH B . F 5 HOH 9 29 51 HOH HOH B . F 5 HOH 10 30 54 HOH HOH B . F 5 HOH 11 31 58 HOH HOH B . F 5 HOH 12 32 63 HOH HOH B . F 5 HOH 13 33 67 HOH HOH B . F 5 HOH 14 34 71 HOH HOH B . F 5 HOH 15 35 72 HOH HOH B . F 5 HOH 16 36 74 HOH HOH B . F 5 HOH 17 37 76 HOH HOH B . F 5 HOH 18 38 86 HOH HOH B . F 5 HOH 19 39 87 HOH HOH B . F 5 HOH 20 40 88 HOH HOH B . F 5 HOH 21 41 91 HOH HOH B . F 5 HOH 22 42 94 HOH HOH B . F 5 HOH 23 43 99 HOH HOH B . F 5 HOH 24 44 102 HOH HOH B . G 5 HOH 1 79 78 HOH HOH C . G 5 HOH 2 80 79 HOH HOH C . G 5 HOH 3 81 80 HOH HOH C . G 5 HOH 4 82 81 HOH HOH C . G 5 HOH 5 83 1 HOH HOH C . G 5 HOH 6 84 83 HOH HOH C . G 5 HOH 7 85 84 HOH HOH C . G 5 HOH 8 86 85 HOH HOH C . G 5 HOH 9 87 2 HOH HOH C . G 5 HOH 10 88 3 HOH HOH C . G 5 HOH 11 89 11 HOH HOH C . G 5 HOH 12 90 12 HOH HOH C . G 5 HOH 13 91 90 HOH HOH C . G 5 HOH 14 92 13 HOH HOH C . G 5 HOH 15 93 92 HOH HOH C . G 5 HOH 16 94 93 HOH HOH C . G 5 HOH 17 95 15 HOH HOH C . G 5 HOH 18 96 19 HOH HOH C . G 5 HOH 19 97 96 HOH HOH C . G 5 HOH 20 98 21 HOH HOH C . G 5 HOH 21 99 98 HOH HOH C . G 5 HOH 22 100 22 HOH HOH C . G 5 HOH 23 101 30 HOH HOH C . G 5 HOH 24 102 33 HOH HOH C . G 5 HOH 25 103 103 HOH HOH C . G 5 HOH 26 104 104 HOH HOH C . G 5 HOH 27 105 105 HOH HOH C . G 5 HOH 28 106 106 HOH HOH C . G 5 HOH 29 107 107 HOH HOH C . G 5 HOH 30 108 34 HOH HOH C . G 5 HOH 31 109 36 HOH HOH C . G 5 HOH 32 110 38 HOH HOH C . G 5 HOH 33 111 39 HOH HOH C . G 5 HOH 34 112 41 HOH HOH C . G 5 HOH 35 113 45 HOH HOH C . G 5 HOH 36 114 47 HOH HOH C . G 5 HOH 37 115 48 HOH HOH C . G 5 HOH 38 116 49 HOH HOH C . G 5 HOH 39 117 52 HOH HOH C . G 5 HOH 40 118 53 HOH HOH C . G 5 HOH 41 119 55 HOH HOH C . G 5 HOH 42 120 56 HOH HOH C . G 5 HOH 43 121 59 HOH HOH C . G 5 HOH 44 122 60 HOH HOH C . G 5 HOH 45 123 62 HOH HOH C . G 5 HOH 46 124 64 HOH HOH C . G 5 HOH 47 125 66 HOH HOH C . G 5 HOH 48 126 68 HOH HOH C . G 5 HOH 49 127 69 HOH HOH C . G 5 HOH 50 128 70 HOH HOH C . G 5 HOH 51 129 73 HOH HOH C . G 5 HOH 52 130 75 HOH HOH C . G 5 HOH 53 131 77 HOH HOH C . G 5 HOH 54 132 100 HOH HOH C . G 5 HOH 55 133 25 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 21 ? CD ? C LYS 21 CD 2 1 Y 1 C LYS 21 ? CE ? C LYS 21 CE 3 1 Y 1 C LYS 21 ? NZ ? C LYS 21 NZ 4 1 Y 1 C LYS 25 ? CG ? C LYS 25 CG 5 1 Y 1 C LYS 25 ? CD ? C LYS 25 CD 6 1 Y 1 C LYS 25 ? CE ? C LYS 25 CE 7 1 Y 1 C LYS 25 ? NZ ? C LYS 25 NZ 8 1 Y 1 C GLN 61 ? CG ? C GLN 61 CG 9 1 Y 1 C GLN 61 ? CD ? C GLN 61 CD 10 1 Y 1 C GLN 61 ? OE1 ? C GLN 61 OE1 11 1 Y 1 C GLN 61 ? NE2 ? C GLN 61 NE2 12 1 Y 1 C LYS 64 ? CD ? C LYS 64 CD 13 1 Y 1 C LYS 64 ? CE ? C LYS 64 CE 14 1 Y 1 C LYS 64 ? NZ ? C LYS 64 NZ 15 1 Y 1 C ASP 71 ? CG ? C ASP 71 CG 16 1 Y 1 C ASP 71 ? OD1 ? C ASP 71 OD1 17 1 Y 1 C ASP 71 ? OD2 ? C ASP 71 OD2 18 1 Y 1 C LYS 76 ? CE ? C LYS 76 CE 19 1 Y 1 C LYS 76 ? NZ ? C LYS 76 NZ 20 1 Y 1 C VAL 77 ? CA ? C VAL 77 CA 21 1 Y 1 C VAL 77 ? C ? C VAL 77 C 22 1 Y 1 C VAL 77 ? O ? C VAL 77 O 23 1 Y 1 C VAL 77 ? CB ? C VAL 77 CB 24 1 Y 1 C VAL 77 ? CG1 ? C VAL 77 CG1 25 1 Y 1 C VAL 77 ? CG2 ? C VAL 77 CG2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHENIX 'model building' AUTOSOL ? 2 REFMAC refinement 5.5.0044 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing AUTOSOL ? 6 # _cell.entry_id 3KDE _cell.length_a 28.692 _cell.length_b 69.325 _cell.length_c 35.126 _cell.angle_alpha 90.00 _cell.angle_beta 92.52 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KDE _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3KDE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '24% PEG 8000, 5 mM NaCl, 50 mM CAPSO pH 9.0, 10 mM TCEP, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 8000' ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 CAPSO ? ? ? 1 4 1 TCEP ? ? ? 1 5 2 'PEG 8000' ? ? ? 1 6 2 NaCl ? ? ? 1 7 2 CAPSO ? ? ? 1 8 2 TCEP ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2008-12-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double flat crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.92000 # _reflns.entry_id 3KDE _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.74 _reflns.number_obs 26096 _reflns.number_all 26096 _reflns.percent_possible_obs 95.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.049 _reflns.pdbx_netI_over_sigmaI 21.6 _reflns.B_iso_Wilson_estimate 22.6 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.74 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 66.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.290 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1841 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3KDE _refine.ls_number_reflns_obs 12316 _refine.ls_number_reflns_all 12316 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.09 _refine.ls_d_res_high 1.74 _refine.ls_percent_reflns_obs 100 _refine.ls_R_factor_obs 0.17935 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17737 _refine.ls_R_factor_R_free 0.21580 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 666 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 31.0 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details '1. The Friedel pairs were used in phasing. 2. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS - NOT INCLUDED IN FINAL MODEL' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.118 _refine.pdbx_overall_ESU_R_Free 0.115 _refine.overall_SU_ML 0.084 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 567 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 1079 _refine_hist.d_res_high 1.74 _refine_hist.d_res_low 35.09 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1063 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 615 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.323 2.422 ? 1519 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.846 3.000 ? 1514 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.039 5.000 ? 79 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.814 23.077 ? 26 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.055 15.000 ? 111 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 24.903 15.000 ? 5 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.014 0.020 ? 896 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 169 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.74 _refine_ls_shell.d_res_low 1.79 _refine_ls_shell.number_reflns_R_work 564 _refine_ls_shell.R_factor_R_work 0.261 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.304 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3KDE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3KDE _struct.title 'Crystal structure of the THAP domain from D. melanogaster P-element transposase in complex with its natural DNA binding site' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KDE _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;THAP domain, DNA-binding domain, zinc-finger, beta-alpha-beta, P-element transposase, DNA integration, DNA recombination, DNA-binding, Metal-binding, DNA BINDING PROTEIN-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 3KDE 3KDE 1 GTTAAGTGGA 1 ? 2 PDB 3KDE 3KDE 2 TCCACTTAAC 1 ? 3 UNP PELET_DROME Q7M3K2 3 MKYCKFCCKAVTGVKLIHVPKCAIKRKLWEQSLGCSLGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSKV 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KDE A 1 ? 10 ? 3KDE 1 ? 10 ? 1 10 2 2 3KDE B 1 ? 10 ? 3KDE 11 ? 20 ? 11 20 3 3 3KDE C 1 ? 77 ? Q7M3K2 1 ? 77 ? 1 77 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KDE BRU A 7 ? PDB 3KDE DT 7 'engineered mutation' 7 1 2 3KDE BRU B 1 ? PDB 3KDE DT 1 'engineered mutation' 11 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2880 ? 1 MORE -10.8 ? 1 'SSA (A^2)' 7210 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'Biological assembly is a single THAP domain - dsDNA heterodimer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS C 22 ? GLY C 34 ? CYS C 22 GLY C 34 1 ? 13 HELX_P HELX_P2 2 THR C 46 ? PHE C 48 ? THR C 46 PHE C 48 5 ? 3 HELX_P HELX_P3 3 ASN C 49 ? TRP C 53 ? ASN C 49 TRP C 53 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 6 "O3'" ? ? ? 1_555 A BRU 7 P ? ? A DG 6 A BRU 7 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? A BRU 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A BRU 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale3 covale both ? B BRU 1 "O3'" ? ? ? 1_555 B DC 2 P ? ? B BRU 11 B DC 12 1_555 ? ? ? ? ? ? ? 1.611 ? ? metalc1 metalc ? ? C CYS 4 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 4 C ZN 78 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc2 metalc ? ? C CYS 7 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 7 C ZN 78 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc3 metalc ? ? C CYS 44 SG ? ? ? 1_555 D ZN . ZN ? ? C CYS 44 C ZN 78 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc4 metalc ? ? C HIS 47 NE2 ? ? ? 1_555 D ZN . ZN ? ? C HIS 47 C ZN 78 1_555 ? ? ? ? ? ? ? 2.057 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 2 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 3 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 6 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A BRU 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A BRU 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A BRU 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A BRU 7 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 8 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B BRU 1 N3 ? ? A DA 10 B BRU 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B BRU 1 O4 ? ? A DA 10 B BRU 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 4 ? C CYS 4 ? 1_555 ZN ? D ZN . ? C ZN 78 ? 1_555 SG ? C CYS 7 ? C CYS 7 ? 1_555 111.7 ? 2 SG ? C CYS 4 ? C CYS 4 ? 1_555 ZN ? D ZN . ? C ZN 78 ? 1_555 SG ? C CYS 44 ? C CYS 44 ? 1_555 103.8 ? 3 SG ? C CYS 7 ? C CYS 7 ? 1_555 ZN ? D ZN . ? C ZN 78 ? 1_555 SG ? C CYS 44 ? C CYS 44 ? 1_555 121.3 ? 4 SG ? C CYS 4 ? C CYS 4 ? 1_555 ZN ? D ZN . ? C ZN 78 ? 1_555 NE2 ? C HIS 47 ? C HIS 47 ? 1_555 107.0 ? 5 SG ? C CYS 7 ? C CYS 7 ? 1_555 ZN ? D ZN . ? C ZN 78 ? 1_555 NE2 ? C HIS 47 ? C HIS 47 ? 1_555 103.4 ? 6 SG ? C CYS 44 ? C CYS 44 ? 1_555 ZN ? D ZN . ? C ZN 78 ? 1_555 NE2 ? C HIS 47 ? C HIS 47 ? 1_555 108.9 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR C 3 ? CYS C 4 ? TYR C 3 CYS C 4 A 2 LYS C 9 ? ALA C 10 ? LYS C 9 ALA C 10 B 1 LEU C 16 ? HIS C 18 ? LEU C 16 HIS C 18 B 2 GLN C 42 ? CYS C 44 ? GLN C 42 CYS C 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS C 4 ? N CYS C 4 O LYS C 9 ? O LYS C 9 B 1 2 N ILE C 17 ? N ILE C 17 O ILE C 43 ? O ILE C 43 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 78 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN C 78' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 4 ? CYS C 4 . ? 1_555 ? 2 AC1 4 CYS C 7 ? CYS C 7 . ? 1_555 ? 3 AC1 4 CYS C 44 ? CYS C 44 . ? 1_555 ? 4 AC1 4 HIS C 47 ? HIS C 47 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 9 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 9 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.380 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.039 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.84 108.30 2.54 0.30 N 2 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.28 108.30 2.98 0.30 N 3 1 "C3'" B BRU 11 ? ? "O3'" B BRU 11 ? ? P B DC 12 ? ? 127.22 119.70 7.52 1.20 Y 4 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.25 108.30 1.95 0.30 N 5 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 111.44 108.30 3.14 0.30 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 7 A BRU 7 ? DU ? 2 B BRU 1 B BRU 11 ? DU ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C PRO 57 ? C PRO 57 2 1 Y 1 C ALA 58 ? C ALA 58 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BRU N1 N N N 74 BRU C2 C N N 75 BRU N3 N N N 76 BRU C4 C N N 77 BRU C5 C N N 78 BRU C6 C N N 79 BRU O2 O N N 80 BRU O4 O N N 81 BRU BR BR N N 82 BRU "C1'" C N R 83 BRU "C2'" C N N 84 BRU "C3'" C N S 85 BRU "C4'" C N R 86 BRU "O3'" O N N 87 BRU "O4'" O N N 88 BRU "C5'" C N N 89 BRU "O5'" O N N 90 BRU P P N N 91 BRU OP1 O N N 92 BRU OP2 O N N 93 BRU OP3 O N N 94 BRU HN3 H N N 95 BRU H6 H N N 96 BRU "H1'" H N N 97 BRU "H2'" H N N 98 BRU "H2''" H N N 99 BRU "H3'" H N N 100 BRU "H4'" H N N 101 BRU "HO3'" H N N 102 BRU "H5'" H N N 103 BRU "H5''" H N N 104 BRU HOP2 H N N 105 BRU HOP3 H N N 106 CYS N N N N 107 CYS CA C N R 108 CYS C C N N 109 CYS O O N N 110 CYS CB C N N 111 CYS SG S N N 112 CYS OXT O N N 113 CYS H H N N 114 CYS H2 H N N 115 CYS HA H N N 116 CYS HB2 H N N 117 CYS HB3 H N N 118 CYS HG H N N 119 CYS HXT H N N 120 DA OP3 O N N 121 DA P P N N 122 DA OP1 O N N 123 DA OP2 O N N 124 DA "O5'" O N N 125 DA "C5'" C N N 126 DA "C4'" C N R 127 DA "O4'" O N N 128 DA "C3'" C N S 129 DA "O3'" O N N 130 DA "C2'" C N N 131 DA "C1'" C N R 132 DA N9 N Y N 133 DA C8 C Y N 134 DA N7 N Y N 135 DA C5 C Y N 136 DA C6 C Y N 137 DA N6 N N N 138 DA N1 N Y N 139 DA C2 C Y N 140 DA N3 N Y N 141 DA C4 C Y N 142 DA HOP3 H N N 143 DA HOP2 H N N 144 DA "H5'" H N N 145 DA "H5''" H N N 146 DA "H4'" H N N 147 DA "H3'" H N N 148 DA "HO3'" H N N 149 DA "H2'" H N N 150 DA "H2''" H N N 151 DA "H1'" H N N 152 DA H8 H N N 153 DA H61 H N N 154 DA H62 H N N 155 DA H2 H N N 156 DC OP3 O N N 157 DC P P N N 158 DC OP1 O N N 159 DC OP2 O N N 160 DC "O5'" O N N 161 DC "C5'" C N N 162 DC "C4'" C N R 163 DC "O4'" O N N 164 DC "C3'" C N S 165 DC "O3'" O N N 166 DC "C2'" C N N 167 DC "C1'" C N R 168 DC N1 N N N 169 DC C2 C N N 170 DC O2 O N N 171 DC N3 N N N 172 DC C4 C N N 173 DC N4 N N N 174 DC C5 C N N 175 DC C6 C N N 176 DC HOP3 H N N 177 DC HOP2 H N N 178 DC "H5'" H N N 179 DC "H5''" H N N 180 DC "H4'" H N N 181 DC "H3'" H N N 182 DC "HO3'" H N N 183 DC "H2'" H N N 184 DC "H2''" H N N 185 DC "H1'" H N N 186 DC H41 H N N 187 DC H42 H N N 188 DC H5 H N N 189 DC H6 H N N 190 DG OP3 O N N 191 DG P P N N 192 DG OP1 O N N 193 DG OP2 O N N 194 DG "O5'" O N N 195 DG "C5'" C N N 196 DG "C4'" C N R 197 DG "O4'" O N N 198 DG "C3'" C N S 199 DG "O3'" O N N 200 DG "C2'" C N N 201 DG "C1'" C N R 202 DG N9 N Y N 203 DG C8 C Y N 204 DG N7 N Y N 205 DG C5 C Y N 206 DG C6 C N N 207 DG O6 O N N 208 DG N1 N N N 209 DG C2 C N N 210 DG N2 N N N 211 DG N3 N N N 212 DG C4 C Y N 213 DG HOP3 H N N 214 DG HOP2 H N N 215 DG "H5'" H N N 216 DG "H5''" H N N 217 DG "H4'" H N N 218 DG "H3'" H N N 219 DG "HO3'" H N N 220 DG "H2'" H N N 221 DG "H2''" H N N 222 DG "H1'" H N N 223 DG H8 H N N 224 DG H1 H N N 225 DG H21 H N N 226 DG H22 H N N 227 DT OP3 O N N 228 DT P P N N 229 DT OP1 O N N 230 DT OP2 O N N 231 DT "O5'" O N N 232 DT "C5'" C N N 233 DT "C4'" C N R 234 DT "O4'" O N N 235 DT "C3'" C N S 236 DT "O3'" O N N 237 DT "C2'" C N N 238 DT "C1'" C N R 239 DT N1 N N N 240 DT C2 C N N 241 DT O2 O N N 242 DT N3 N N N 243 DT C4 C N N 244 DT O4 O N N 245 DT C5 C N N 246 DT C7 C N N 247 DT C6 C N N 248 DT HOP3 H N N 249 DT HOP2 H N N 250 DT "H5'" H N N 251 DT "H5''" H N N 252 DT "H4'" H N N 253 DT "H3'" H N N 254 DT "HO3'" H N N 255 DT "H2'" H N N 256 DT "H2''" H N N 257 DT "H1'" H N N 258 DT H3 H N N 259 DT H71 H N N 260 DT H72 H N N 261 DT H73 H N N 262 DT H6 H N N 263 GLN N N N N 264 GLN CA C N S 265 GLN C C N N 266 GLN O O N N 267 GLN CB C N N 268 GLN CG C N N 269 GLN CD C N N 270 GLN OE1 O N N 271 GLN NE2 N N N 272 GLN OXT O N N 273 GLN H H N N 274 GLN H2 H N N 275 GLN HA H N N 276 GLN HB2 H N N 277 GLN HB3 H N N 278 GLN HG2 H N N 279 GLN HG3 H N N 280 GLN HE21 H N N 281 GLN HE22 H N N 282 GLN HXT H N N 283 GLU N N N N 284 GLU CA C N S 285 GLU C C N N 286 GLU O O N N 287 GLU CB C N N 288 GLU CG C N N 289 GLU CD C N N 290 GLU OE1 O N N 291 GLU OE2 O N N 292 GLU OXT O N N 293 GLU H H N N 294 GLU H2 H N N 295 GLU HA H N N 296 GLU HB2 H N N 297 GLU HB3 H N N 298 GLU HG2 H N N 299 GLU HG3 H N N 300 GLU HE2 H N N 301 GLU HXT H N N 302 GLY N N N N 303 GLY CA C N N 304 GLY C C N N 305 GLY O O N N 306 GLY OXT O N N 307 GLY H H N N 308 GLY H2 H N N 309 GLY HA2 H N N 310 GLY HA3 H N N 311 GLY HXT H N N 312 HIS N N N N 313 HIS CA C N S 314 HIS C C N N 315 HIS O O N N 316 HIS CB C N N 317 HIS CG C Y N 318 HIS ND1 N Y N 319 HIS CD2 C Y N 320 HIS CE1 C Y N 321 HIS NE2 N Y N 322 HIS OXT O N N 323 HIS H H N N 324 HIS H2 H N N 325 HIS HA H N N 326 HIS HB2 H N N 327 HIS HB3 H N N 328 HIS HD1 H N N 329 HIS HD2 H N N 330 HIS HE1 H N N 331 HIS HE2 H N N 332 HIS HXT H N N 333 HOH O O N N 334 HOH H1 H N N 335 HOH H2 H N N 336 ILE N N N N 337 ILE CA C N S 338 ILE C C N N 339 ILE O O N N 340 ILE CB C N S 341 ILE CG1 C N N 342 ILE CG2 C N N 343 ILE CD1 C N N 344 ILE OXT O N N 345 ILE H H N N 346 ILE H2 H N N 347 ILE HA H N N 348 ILE HB H N N 349 ILE HG12 H N N 350 ILE HG13 H N N 351 ILE HG21 H N N 352 ILE HG22 H N N 353 ILE HG23 H N N 354 ILE HD11 H N N 355 ILE HD12 H N N 356 ILE HD13 H N N 357 ILE HXT H N N 358 LEU N N N N 359 LEU CA C N S 360 LEU C C N N 361 LEU O O N N 362 LEU CB C N N 363 LEU CG C N N 364 LEU CD1 C N N 365 LEU CD2 C N N 366 LEU OXT O N N 367 LEU H H N N 368 LEU H2 H N N 369 LEU HA H N N 370 LEU HB2 H N N 371 LEU HB3 H N N 372 LEU HG H N N 373 LEU HD11 H N N 374 LEU HD12 H N N 375 LEU HD13 H N N 376 LEU HD21 H N N 377 LEU HD22 H N N 378 LEU HD23 H N N 379 LEU HXT H N N 380 LYS N N N N 381 LYS CA C N S 382 LYS C C N N 383 LYS O O N N 384 LYS CB C N N 385 LYS CG C N N 386 LYS CD C N N 387 LYS CE C N N 388 LYS NZ N N N 389 LYS OXT O N N 390 LYS H H N N 391 LYS H2 H N N 392 LYS HA H N N 393 LYS HB2 H N N 394 LYS HB3 H N N 395 LYS HG2 H N N 396 LYS HG3 H N N 397 LYS HD2 H N N 398 LYS HD3 H N N 399 LYS HE2 H N N 400 LYS HE3 H N N 401 LYS HZ1 H N N 402 LYS HZ2 H N N 403 LYS HZ3 H N N 404 LYS HXT H N N 405 MET N N N N 406 MET CA C N S 407 MET C C N N 408 MET O O N N 409 MET CB C N N 410 MET CG C N N 411 MET SD S N N 412 MET CE C N N 413 MET OXT O N N 414 MET H H N N 415 MET H2 H N N 416 MET HA H N N 417 MET HB2 H N N 418 MET HB3 H N N 419 MET HG2 H N N 420 MET HG3 H N N 421 MET HE1 H N N 422 MET HE2 H N N 423 MET HE3 H N N 424 MET HXT H N N 425 PHE N N N N 426 PHE CA C N S 427 PHE C C N N 428 PHE O O N N 429 PHE CB C N N 430 PHE CG C Y N 431 PHE CD1 C Y N 432 PHE CD2 C Y N 433 PHE CE1 C Y N 434 PHE CE2 C Y N 435 PHE CZ C Y N 436 PHE OXT O N N 437 PHE H H N N 438 PHE H2 H N N 439 PHE HA H N N 440 PHE HB2 H N N 441 PHE HB3 H N N 442 PHE HD1 H N N 443 PHE HD2 H N N 444 PHE HE1 H N N 445 PHE HE2 H N N 446 PHE HZ H N N 447 PHE HXT H N N 448 PRO N N N N 449 PRO CA C N S 450 PRO C C N N 451 PRO O O N N 452 PRO CB C N N 453 PRO CG C N N 454 PRO CD C N N 455 PRO OXT O N N 456 PRO H H N N 457 PRO HA H N N 458 PRO HB2 H N N 459 PRO HB3 H N N 460 PRO HG2 H N N 461 PRO HG3 H N N 462 PRO HD2 H N N 463 PRO HD3 H N N 464 PRO HXT H N N 465 SER N N N N 466 SER CA C N S 467 SER C C N N 468 SER O O N N 469 SER CB C N N 470 SER OG O N N 471 SER OXT O N N 472 SER H H N N 473 SER H2 H N N 474 SER HA H N N 475 SER HB2 H N N 476 SER HB3 H N N 477 SER HG H N N 478 SER HXT H N N 479 THR N N N N 480 THR CA C N S 481 THR C C N N 482 THR O O N N 483 THR CB C N R 484 THR OG1 O N N 485 THR CG2 C N N 486 THR OXT O N N 487 THR H H N N 488 THR H2 H N N 489 THR HA H N N 490 THR HB H N N 491 THR HG1 H N N 492 THR HG21 H N N 493 THR HG22 H N N 494 THR HG23 H N N 495 THR HXT H N N 496 TRP N N N N 497 TRP CA C N S 498 TRP C C N N 499 TRP O O N N 500 TRP CB C N N 501 TRP CG C Y N 502 TRP CD1 C Y N 503 TRP CD2 C Y N 504 TRP NE1 N Y N 505 TRP CE2 C Y N 506 TRP CE3 C Y N 507 TRP CZ2 C Y N 508 TRP CZ3 C Y N 509 TRP CH2 C Y N 510 TRP OXT O N N 511 TRP H H N N 512 TRP H2 H N N 513 TRP HA H N N 514 TRP HB2 H N N 515 TRP HB3 H N N 516 TRP HD1 H N N 517 TRP HE1 H N N 518 TRP HE3 H N N 519 TRP HZ2 H N N 520 TRP HZ3 H N N 521 TRP HH2 H N N 522 TRP HXT H N N 523 TYR N N N N 524 TYR CA C N S 525 TYR C C N N 526 TYR O O N N 527 TYR CB C N N 528 TYR CG C Y N 529 TYR CD1 C Y N 530 TYR CD2 C Y N 531 TYR CE1 C Y N 532 TYR CE2 C Y N 533 TYR CZ C Y N 534 TYR OH O N N 535 TYR OXT O N N 536 TYR H H N N 537 TYR H2 H N N 538 TYR HA H N N 539 TYR HB2 H N N 540 TYR HB3 H N N 541 TYR HD1 H N N 542 TYR HD2 H N N 543 TYR HE1 H N N 544 TYR HE2 H N N 545 TYR HH H N N 546 TYR HXT H N N 547 VAL N N N N 548 VAL CA C N S 549 VAL C C N N 550 VAL O O N N 551 VAL CB C N N 552 VAL CG1 C N N 553 VAL CG2 C N N 554 VAL OXT O N N 555 VAL H H N N 556 VAL H2 H N N 557 VAL HA H N N 558 VAL HB H N N 559 VAL HG11 H N N 560 VAL HG12 H N N 561 VAL HG13 H N N 562 VAL HG21 H N N 563 VAL HG22 H N N 564 VAL HG23 H N N 565 VAL HXT H N N 566 ZN ZN ZN N N 567 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BRU N1 C2 sing N N 70 BRU N1 C6 sing N N 71 BRU N1 "C1'" sing N N 72 BRU C2 N3 sing N N 73 BRU C2 O2 doub N N 74 BRU N3 C4 sing N N 75 BRU N3 HN3 sing N N 76 BRU C4 C5 sing N N 77 BRU C4 O4 doub N N 78 BRU C5 C6 doub N N 79 BRU C5 BR sing N N 80 BRU C6 H6 sing N N 81 BRU "C1'" "C2'" sing N N 82 BRU "C1'" "O4'" sing N N 83 BRU "C1'" "H1'" sing N N 84 BRU "C2'" "C3'" sing N N 85 BRU "C2'" "H2'" sing N N 86 BRU "C2'" "H2''" sing N N 87 BRU "C3'" "C4'" sing N N 88 BRU "C3'" "O3'" sing N N 89 BRU "C3'" "H3'" sing N N 90 BRU "C4'" "O4'" sing N N 91 BRU "C4'" "C5'" sing N N 92 BRU "C4'" "H4'" sing N N 93 BRU "O3'" "HO3'" sing N N 94 BRU "C5'" "O5'" sing N N 95 BRU "C5'" "H5'" sing N N 96 BRU "C5'" "H5''" sing N N 97 BRU "O5'" P sing N N 98 BRU P OP1 doub N N 99 BRU P OP2 sing N N 100 BRU P OP3 sing N N 101 BRU OP2 HOP2 sing N N 102 BRU OP3 HOP3 sing N N 103 CYS N CA sing N N 104 CYS N H sing N N 105 CYS N H2 sing N N 106 CYS CA C sing N N 107 CYS CA CB sing N N 108 CYS CA HA sing N N 109 CYS C O doub N N 110 CYS C OXT sing N N 111 CYS CB SG sing N N 112 CYS CB HB2 sing N N 113 CYS CB HB3 sing N N 114 CYS SG HG sing N N 115 CYS OXT HXT sing N N 116 DA OP3 P sing N N 117 DA OP3 HOP3 sing N N 118 DA P OP1 doub N N 119 DA P OP2 sing N N 120 DA P "O5'" sing N N 121 DA OP2 HOP2 sing N N 122 DA "O5'" "C5'" sing N N 123 DA "C5'" "C4'" sing N N 124 DA "C5'" "H5'" sing N N 125 DA "C5'" "H5''" sing N N 126 DA "C4'" "O4'" sing N N 127 DA "C4'" "C3'" sing N N 128 DA "C4'" "H4'" sing N N 129 DA "O4'" "C1'" sing N N 130 DA "C3'" "O3'" sing N N 131 DA "C3'" "C2'" sing N N 132 DA "C3'" "H3'" sing N N 133 DA "O3'" "HO3'" sing N N 134 DA "C2'" "C1'" sing N N 135 DA "C2'" "H2'" sing N N 136 DA "C2'" "H2''" sing N N 137 DA "C1'" N9 sing N N 138 DA "C1'" "H1'" sing N N 139 DA N9 C8 sing Y N 140 DA N9 C4 sing Y N 141 DA C8 N7 doub Y N 142 DA C8 H8 sing N N 143 DA N7 C5 sing Y N 144 DA C5 C6 sing Y N 145 DA C5 C4 doub Y N 146 DA C6 N6 sing N N 147 DA C6 N1 doub Y N 148 DA N6 H61 sing N N 149 DA N6 H62 sing N N 150 DA N1 C2 sing Y N 151 DA C2 N3 doub Y N 152 DA C2 H2 sing N N 153 DA N3 C4 sing Y N 154 DC OP3 P sing N N 155 DC OP3 HOP3 sing N N 156 DC P OP1 doub N N 157 DC P OP2 sing N N 158 DC P "O5'" sing N N 159 DC OP2 HOP2 sing N N 160 DC "O5'" "C5'" sing N N 161 DC "C5'" "C4'" sing N N 162 DC "C5'" "H5'" sing N N 163 DC "C5'" "H5''" sing N N 164 DC "C4'" "O4'" sing N N 165 DC "C4'" "C3'" sing N N 166 DC "C4'" "H4'" sing N N 167 DC "O4'" "C1'" sing N N 168 DC "C3'" "O3'" sing N N 169 DC "C3'" "C2'" sing N N 170 DC "C3'" "H3'" sing N N 171 DC "O3'" "HO3'" sing N N 172 DC "C2'" "C1'" sing N N 173 DC "C2'" "H2'" sing N N 174 DC "C2'" "H2''" sing N N 175 DC "C1'" N1 sing N N 176 DC "C1'" "H1'" sing N N 177 DC N1 C2 sing N N 178 DC N1 C6 sing N N 179 DC C2 O2 doub N N 180 DC C2 N3 sing N N 181 DC N3 C4 doub N N 182 DC C4 N4 sing N N 183 DC C4 C5 sing N N 184 DC N4 H41 sing N N 185 DC N4 H42 sing N N 186 DC C5 C6 doub N N 187 DC C5 H5 sing N N 188 DC C6 H6 sing N N 189 DG OP3 P sing N N 190 DG OP3 HOP3 sing N N 191 DG P OP1 doub N N 192 DG P OP2 sing N N 193 DG P "O5'" sing N N 194 DG OP2 HOP2 sing N N 195 DG "O5'" "C5'" sing N N 196 DG "C5'" "C4'" sing N N 197 DG "C5'" "H5'" sing N N 198 DG "C5'" "H5''" sing N N 199 DG "C4'" "O4'" sing N N 200 DG "C4'" "C3'" sing N N 201 DG "C4'" "H4'" sing N N 202 DG "O4'" "C1'" sing N N 203 DG "C3'" "O3'" sing N N 204 DG "C3'" "C2'" sing N N 205 DG "C3'" "H3'" sing N N 206 DG "O3'" "HO3'" sing N N 207 DG "C2'" "C1'" sing N N 208 DG "C2'" "H2'" sing N N 209 DG "C2'" "H2''" sing N N 210 DG "C1'" N9 sing N N 211 DG "C1'" "H1'" sing N N 212 DG N9 C8 sing Y N 213 DG N9 C4 sing Y N 214 DG C8 N7 doub Y N 215 DG C8 H8 sing N N 216 DG N7 C5 sing Y N 217 DG C5 C6 sing N N 218 DG C5 C4 doub Y N 219 DG C6 O6 doub N N 220 DG C6 N1 sing N N 221 DG N1 C2 sing N N 222 DG N1 H1 sing N N 223 DG C2 N2 sing N N 224 DG C2 N3 doub N N 225 DG N2 H21 sing N N 226 DG N2 H22 sing N N 227 DG N3 C4 sing N N 228 DT OP3 P sing N N 229 DT OP3 HOP3 sing N N 230 DT P OP1 doub N N 231 DT P OP2 sing N N 232 DT P "O5'" sing N N 233 DT OP2 HOP2 sing N N 234 DT "O5'" "C5'" sing N N 235 DT "C5'" "C4'" sing N N 236 DT "C5'" "H5'" sing N N 237 DT "C5'" "H5''" sing N N 238 DT "C4'" "O4'" sing N N 239 DT "C4'" "C3'" sing N N 240 DT "C4'" "H4'" sing N N 241 DT "O4'" "C1'" sing N N 242 DT "C3'" "O3'" sing N N 243 DT "C3'" "C2'" sing N N 244 DT "C3'" "H3'" sing N N 245 DT "O3'" "HO3'" sing N N 246 DT "C2'" "C1'" sing N N 247 DT "C2'" "H2'" sing N N 248 DT "C2'" "H2''" sing N N 249 DT "C1'" N1 sing N N 250 DT "C1'" "H1'" sing N N 251 DT N1 C2 sing N N 252 DT N1 C6 sing N N 253 DT C2 O2 doub N N 254 DT C2 N3 sing N N 255 DT N3 C4 sing N N 256 DT N3 H3 sing N N 257 DT C4 O4 doub N N 258 DT C4 C5 sing N N 259 DT C5 C7 sing N N 260 DT C5 C6 doub N N 261 DT C7 H71 sing N N 262 DT C7 H72 sing N N 263 DT C7 H73 sing N N 264 DT C6 H6 sing N N 265 GLN N CA sing N N 266 GLN N H sing N N 267 GLN N H2 sing N N 268 GLN CA C sing N N 269 GLN CA CB sing N N 270 GLN CA HA sing N N 271 GLN C O doub N N 272 GLN C OXT sing N N 273 GLN CB CG sing N N 274 GLN CB HB2 sing N N 275 GLN CB HB3 sing N N 276 GLN CG CD sing N N 277 GLN CG HG2 sing N N 278 GLN CG HG3 sing N N 279 GLN CD OE1 doub N N 280 GLN CD NE2 sing N N 281 GLN NE2 HE21 sing N N 282 GLN NE2 HE22 sing N N 283 GLN OXT HXT sing N N 284 GLU N CA sing N N 285 GLU N H sing N N 286 GLU N H2 sing N N 287 GLU CA C sing N N 288 GLU CA CB sing N N 289 GLU CA HA sing N N 290 GLU C O doub N N 291 GLU C OXT sing N N 292 GLU CB CG sing N N 293 GLU CB HB2 sing N N 294 GLU CB HB3 sing N N 295 GLU CG CD sing N N 296 GLU CG HG2 sing N N 297 GLU CG HG3 sing N N 298 GLU CD OE1 doub N N 299 GLU CD OE2 sing N N 300 GLU OE2 HE2 sing N N 301 GLU OXT HXT sing N N 302 GLY N CA sing N N 303 GLY N H sing N N 304 GLY N H2 sing N N 305 GLY CA C sing N N 306 GLY CA HA2 sing N N 307 GLY CA HA3 sing N N 308 GLY C O doub N N 309 GLY C OXT sing N N 310 GLY OXT HXT sing N N 311 HIS N CA sing N N 312 HIS N H sing N N 313 HIS N H2 sing N N 314 HIS CA C sing N N 315 HIS CA CB sing N N 316 HIS CA HA sing N N 317 HIS C O doub N N 318 HIS C OXT sing N N 319 HIS CB CG sing N N 320 HIS CB HB2 sing N N 321 HIS CB HB3 sing N N 322 HIS CG ND1 sing Y N 323 HIS CG CD2 doub Y N 324 HIS ND1 CE1 doub Y N 325 HIS ND1 HD1 sing N N 326 HIS CD2 NE2 sing Y N 327 HIS CD2 HD2 sing N N 328 HIS CE1 NE2 sing Y N 329 HIS CE1 HE1 sing N N 330 HIS NE2 HE2 sing N N 331 HIS OXT HXT sing N N 332 HOH O H1 sing N N 333 HOH O H2 sing N N 334 ILE N CA sing N N 335 ILE N H sing N N 336 ILE N H2 sing N N 337 ILE CA C sing N N 338 ILE CA CB sing N N 339 ILE CA HA sing N N 340 ILE C O doub N N 341 ILE C OXT sing N N 342 ILE CB CG1 sing N N 343 ILE CB CG2 sing N N 344 ILE CB HB sing N N 345 ILE CG1 CD1 sing N N 346 ILE CG1 HG12 sing N N 347 ILE CG1 HG13 sing N N 348 ILE CG2 HG21 sing N N 349 ILE CG2 HG22 sing N N 350 ILE CG2 HG23 sing N N 351 ILE CD1 HD11 sing N N 352 ILE CD1 HD12 sing N N 353 ILE CD1 HD13 sing N N 354 ILE OXT HXT sing N N 355 LEU N CA sing N N 356 LEU N H sing N N 357 LEU N H2 sing N N 358 LEU CA C sing N N 359 LEU CA CB sing N N 360 LEU CA HA sing N N 361 LEU C O doub N N 362 LEU C OXT sing N N 363 LEU CB CG sing N N 364 LEU CB HB2 sing N N 365 LEU CB HB3 sing N N 366 LEU CG CD1 sing N N 367 LEU CG CD2 sing N N 368 LEU CG HG sing N N 369 LEU CD1 HD11 sing N N 370 LEU CD1 HD12 sing N N 371 LEU CD1 HD13 sing N N 372 LEU CD2 HD21 sing N N 373 LEU CD2 HD22 sing N N 374 LEU CD2 HD23 sing N N 375 LEU OXT HXT sing N N 376 LYS N CA sing N N 377 LYS N H sing N N 378 LYS N H2 sing N N 379 LYS CA C sing N N 380 LYS CA CB sing N N 381 LYS CA HA sing N N 382 LYS C O doub N N 383 LYS C OXT sing N N 384 LYS CB CG sing N N 385 LYS CB HB2 sing N N 386 LYS CB HB3 sing N N 387 LYS CG CD sing N N 388 LYS CG HG2 sing N N 389 LYS CG HG3 sing N N 390 LYS CD CE sing N N 391 LYS CD HD2 sing N N 392 LYS CD HD3 sing N N 393 LYS CE NZ sing N N 394 LYS CE HE2 sing N N 395 LYS CE HE3 sing N N 396 LYS NZ HZ1 sing N N 397 LYS NZ HZ2 sing N N 398 LYS NZ HZ3 sing N N 399 LYS OXT HXT sing N N 400 MET N CA sing N N 401 MET N H sing N N 402 MET N H2 sing N N 403 MET CA C sing N N 404 MET CA CB sing N N 405 MET CA HA sing N N 406 MET C O doub N N 407 MET C OXT sing N N 408 MET CB CG sing N N 409 MET CB HB2 sing N N 410 MET CB HB3 sing N N 411 MET CG SD sing N N 412 MET CG HG2 sing N N 413 MET CG HG3 sing N N 414 MET SD CE sing N N 415 MET CE HE1 sing N N 416 MET CE HE2 sing N N 417 MET CE HE3 sing N N 418 MET OXT HXT sing N N 419 PHE N CA sing N N 420 PHE N H sing N N 421 PHE N H2 sing N N 422 PHE CA C sing N N 423 PHE CA CB sing N N 424 PHE CA HA sing N N 425 PHE C O doub N N 426 PHE C OXT sing N N 427 PHE CB CG sing N N 428 PHE CB HB2 sing N N 429 PHE CB HB3 sing N N 430 PHE CG CD1 doub Y N 431 PHE CG CD2 sing Y N 432 PHE CD1 CE1 sing Y N 433 PHE CD1 HD1 sing N N 434 PHE CD2 CE2 doub Y N 435 PHE CD2 HD2 sing N N 436 PHE CE1 CZ doub Y N 437 PHE CE1 HE1 sing N N 438 PHE CE2 CZ sing Y N 439 PHE CE2 HE2 sing N N 440 PHE CZ HZ sing N N 441 PHE OXT HXT sing N N 442 PRO N CA sing N N 443 PRO N CD sing N N 444 PRO N H sing N N 445 PRO CA C sing N N 446 PRO CA CB sing N N 447 PRO CA HA sing N N 448 PRO C O doub N N 449 PRO C OXT sing N N 450 PRO CB CG sing N N 451 PRO CB HB2 sing N N 452 PRO CB HB3 sing N N 453 PRO CG CD sing N N 454 PRO CG HG2 sing N N 455 PRO CG HG3 sing N N 456 PRO CD HD2 sing N N 457 PRO CD HD3 sing N N 458 PRO OXT HXT sing N N 459 SER N CA sing N N 460 SER N H sing N N 461 SER N H2 sing N N 462 SER CA C sing N N 463 SER CA CB sing N N 464 SER CA HA sing N N 465 SER C O doub N N 466 SER C OXT sing N N 467 SER CB OG sing N N 468 SER CB HB2 sing N N 469 SER CB HB3 sing N N 470 SER OG HG sing N N 471 SER OXT HXT sing N N 472 THR N CA sing N N 473 THR N H sing N N 474 THR N H2 sing N N 475 THR CA C sing N N 476 THR CA CB sing N N 477 THR CA HA sing N N 478 THR C O doub N N 479 THR C OXT sing N N 480 THR CB OG1 sing N N 481 THR CB CG2 sing N N 482 THR CB HB sing N N 483 THR OG1 HG1 sing N N 484 THR CG2 HG21 sing N N 485 THR CG2 HG22 sing N N 486 THR CG2 HG23 sing N N 487 THR OXT HXT sing N N 488 TRP N CA sing N N 489 TRP N H sing N N 490 TRP N H2 sing N N 491 TRP CA C sing N N 492 TRP CA CB sing N N 493 TRP CA HA sing N N 494 TRP C O doub N N 495 TRP C OXT sing N N 496 TRP CB CG sing N N 497 TRP CB HB2 sing N N 498 TRP CB HB3 sing N N 499 TRP CG CD1 doub Y N 500 TRP CG CD2 sing Y N 501 TRP CD1 NE1 sing Y N 502 TRP CD1 HD1 sing N N 503 TRP CD2 CE2 doub Y N 504 TRP CD2 CE3 sing Y N 505 TRP NE1 CE2 sing Y N 506 TRP NE1 HE1 sing N N 507 TRP CE2 CZ2 sing Y N 508 TRP CE3 CZ3 doub Y N 509 TRP CE3 HE3 sing N N 510 TRP CZ2 CH2 doub Y N 511 TRP CZ2 HZ2 sing N N 512 TRP CZ3 CH2 sing Y N 513 TRP CZ3 HZ3 sing N N 514 TRP CH2 HH2 sing N N 515 TRP OXT HXT sing N N 516 TYR N CA sing N N 517 TYR N H sing N N 518 TYR N H2 sing N N 519 TYR CA C sing N N 520 TYR CA CB sing N N 521 TYR CA HA sing N N 522 TYR C O doub N N 523 TYR C OXT sing N N 524 TYR CB CG sing N N 525 TYR CB HB2 sing N N 526 TYR CB HB3 sing N N 527 TYR CG CD1 doub Y N 528 TYR CG CD2 sing Y N 529 TYR CD1 CE1 sing Y N 530 TYR CD1 HD1 sing N N 531 TYR CD2 CE2 doub Y N 532 TYR CD2 HD2 sing N N 533 TYR CE1 CZ doub Y N 534 TYR CE1 HE1 sing N N 535 TYR CE2 CZ sing Y N 536 TYR CE2 HE2 sing N N 537 TYR CZ OH sing N N 538 TYR OH HH sing N N 539 TYR OXT HXT sing N N 540 VAL N CA sing N N 541 VAL N H sing N N 542 VAL N H2 sing N N 543 VAL CA C sing N N 544 VAL CA CB sing N N 545 VAL CA HA sing N N 546 VAL C O doub N N 547 VAL C OXT sing N N 548 VAL CB CG1 sing N N 549 VAL CB CG2 sing N N 550 VAL CB HB sing N N 551 VAL CG1 HG11 sing N N 552 VAL CG1 HG12 sing N N 553 VAL CG1 HG13 sing N N 554 VAL CG2 HG21 sing N N 555 VAL CG2 HG22 sing N N 556 VAL CG2 HG23 sing N N 557 VAL OXT HXT sing N N 558 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3KDE 'double helix' 3KDE 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.230 -0.145 -0.228 -16.123 -7.654 -0.206 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DT 2 1_555 B DA 9 1_555 -0.148 -0.166 0.223 -5.686 -4.147 4.436 2 A_DT2:DA19_B A 2 ? B 19 ? 20 1 1 A DT 3 1_555 B DA 8 1_555 0.018 -0.190 -0.156 -3.559 -15.604 1.229 3 A_DT3:DA18_B A 3 ? B 18 ? 20 1 1 A DA 4 1_555 B DT 7 1_555 0.089 -0.151 -0.333 -6.238 -3.346 3.736 4 A_DA4:DT17_B A 4 ? B 17 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 -0.032 -0.225 0.169 -0.447 -7.390 -0.759 5 A_DA5:DT16_B A 5 ? B 16 ? 20 1 1 A DG 6 1_555 B DC 5 1_555 -0.103 -0.161 0.268 4.824 -12.127 -0.716 6 A_DG6:DC15_B A 6 ? B 15 ? 19 1 1 A BRU 7 1_555 B DA 4 1_555 0.066 -0.169 -0.069 -4.922 -6.011 -0.152 7 A_BRU7:DA14_B A 7 ? B 14 ? 20 1 1 A DG 8 1_555 B DC 3 1_555 -0.323 -0.149 0.011 2.366 -1.901 0.259 8 A_DG8:DC13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.107 -0.201 -0.316 -1.099 -5.092 -0.847 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DA 10 1_555 B BRU 1 1_555 -0.167 -0.143 0.417 18.859 -1.866 1.192 10 A_DA10:BRU11_B A 10 ? B 11 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DT 2 1_555 B DA 9 1_555 -0.389 -0.852 3.092 -1.437 -0.400 32.738 -1.444 0.455 3.116 -0.710 2.547 32.771 1 AA_DG1DT2:DA19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DT 2 1_555 B DA 9 1_555 A DT 3 1_555 B DA 8 1_555 -0.737 -0.076 3.207 3.448 -4.447 35.633 0.490 1.666 3.111 -7.212 -5.592 36.060 2 AA_DT2DT3:DA18DA19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DT 3 1_555 B DA 8 1_555 A DA 4 1_555 B DT 7 1_555 0.937 1.032 3.386 2.206 2.301 42.482 1.177 -1.056 3.477 3.171 -3.040 42.596 3 AA_DT3DA4:DT17DA18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DA 4 1_555 B DT 7 1_555 A DA 5 1_555 B DT 6 1_555 -1.855 0.854 3.150 -7.439 2.572 35.891 0.995 1.898 3.503 4.113 11.896 36.716 4 AA_DA4DA5:DT16DT17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B DT 6 1_555 A DG 6 1_555 B DC 5 1_555 0.502 0.593 3.313 -1.648 4.994 30.602 0.126 -1.262 3.334 9.374 3.094 31.040 5 AA_DA5DG6:DC15DT16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DG 6 1_555 B DC 5 1_555 A BRU 7 1_555 B DA 4 1_555 1.287 -0.519 3.514 5.604 -1.644 37.505 -0.565 -1.188 3.680 -2.537 -8.651 37.941 6 AA_DG6BRU7:DA14DC15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A BRU 7 1_555 B DA 4 1_555 A DG 8 1_555 B DC 3 1_555 -0.179 -0.730 3.167 -0.309 6.693 27.528 -2.952 0.298 2.913 13.807 0.637 28.316 7 AA_BRU7DG8:DC13DA14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DG 8 1_555 B DC 3 1_555 A DG 9 1_555 B DC 2 1_555 0.469 -0.554 3.616 5.000 0.282 33.580 -0.999 0.090 3.641 0.484 -8.596 33.940 8 AA_DG8DG9:DC12DC13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DA 10 1_555 B BRU 1 1_555 -0.124 0.140 2.907 -5.126 -4.742 34.680 0.852 -0.469 2.853 -7.857 8.492 35.355 9 AA_DG9DA10:BRU11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 3KDE _atom_sites.fract_transf_matrix[1][1] 0.034853 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001534 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014425 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028496 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P S ZN # loop_