data_3KE2 # _entry.id 3KE2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KE2 pdb_00003ke2 10.2210/pdb3ke2/pdb RCSB RCSB055875 ? ? WWPDB D_1000055875 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 400661 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3KE2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of STRUCTURAL GENOMICS, UNKNOWN FUNCTION (YP_928783.1) from SHEWANELLA AMAZONENSIS SB2B at 2.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3KE2 _cell.length_a 66.479 _cell.length_b 100.509 _cell.length_c 114.583 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KE2 _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein YP_928783.1' 13001.906 3 ? D107V ? ? 2 non-polymer syn 'NITRATE ION' 62.005 3 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 water nat water 18.015 60 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TQDNASGDQVSKQHKAFLRKLYLAHL(MSE)DDARHNLLSLGKLTG(MSE)PRRTLQDAIASFADIGIEVEFVQ DGERHNAGYYRIRTWGPISSAW(MSE)DTHVDEVKSLLGVDDAVGQATAGNGA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTQDNASGDQVSKQHKAFLRKLYLAHLMDDARHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRI RTWGPISSAWMDTHVDEVKSLLGVDDAVGQATAGNGA ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier 400661 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 GLN n 1 5 ASP n 1 6 ASN n 1 7 ALA n 1 8 SER n 1 9 GLY n 1 10 ASP n 1 11 GLN n 1 12 VAL n 1 13 SER n 1 14 LYS n 1 15 GLN n 1 16 HIS n 1 17 LYS n 1 18 ALA n 1 19 PHE n 1 20 LEU n 1 21 ARG n 1 22 LYS n 1 23 LEU n 1 24 TYR n 1 25 LEU n 1 26 ALA n 1 27 HIS n 1 28 LEU n 1 29 MSE n 1 30 ASP n 1 31 ASP n 1 32 ALA n 1 33 ARG n 1 34 HIS n 1 35 ASN n 1 36 LEU n 1 37 LEU n 1 38 SER n 1 39 LEU n 1 40 GLY n 1 41 LYS n 1 42 LEU n 1 43 THR n 1 44 GLY n 1 45 MSE n 1 46 PRO n 1 47 ARG n 1 48 ARG n 1 49 THR n 1 50 LEU n 1 51 GLN n 1 52 ASP n 1 53 ALA n 1 54 ILE n 1 55 ALA n 1 56 SER n 1 57 PHE n 1 58 ALA n 1 59 ASP n 1 60 ILE n 1 61 GLY n 1 62 ILE n 1 63 GLU n 1 64 VAL n 1 65 GLU n 1 66 PHE n 1 67 VAL n 1 68 GLN n 1 69 ASP n 1 70 GLY n 1 71 GLU n 1 72 ARG n 1 73 HIS n 1 74 ASN n 1 75 ALA n 1 76 GLY n 1 77 TYR n 1 78 TYR n 1 79 ARG n 1 80 ILE n 1 81 ARG n 1 82 THR n 1 83 TRP n 1 84 GLY n 1 85 PRO n 1 86 ILE n 1 87 SER n 1 88 SER n 1 89 ALA n 1 90 TRP n 1 91 MSE n 1 92 ASP n 1 93 THR n 1 94 HIS n 1 95 VAL n 1 96 ASP n 1 97 GLU n 1 98 VAL n 1 99 LYS n 1 100 SER n 1 101 LEU n 1 102 LEU n 1 103 GLY n 1 104 VAL n 1 105 ASP n 1 106 ASP n 1 107 ALA n 1 108 VAL n 1 109 GLY n 1 110 GLN n 1 111 ALA n 1 112 THR n 1 113 ALA n 1 114 GLY n 1 115 ASN n 1 116 GLY n 1 117 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Sama_2911 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC BAA-1098 / SB2B' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella amazonensis SB2B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 326297 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1S9Q7_SHEAM _struct_ref.pdbx_db_accession A1S9Q7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTQDNASGDQVSKQHKAFLRKLYLAHLMDDARHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIR TWGPISSAWMDTHVDEVKSLLGVDDADGQATAGNGA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KE2 A 2 ? 117 ? A1S9Q7 1 ? 116 ? 1 116 2 1 3KE2 B 2 ? 117 ? A1S9Q7 1 ? 116 ? 1 116 3 1 3KE2 C 2 ? 117 ? A1S9Q7 1 ? 116 ? 1 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KE2 GLY A 1 ? UNP A1S9Q7 ? ? 'expression tag' 0 1 1 3KE2 VAL A 108 ? UNP A1S9Q7 ASP 107 'see remark 999' 107 2 2 3KE2 GLY B 1 ? UNP A1S9Q7 ? ? 'expression tag' 0 3 2 3KE2 VAL B 108 ? UNP A1S9Q7 ASP 107 'see remark 999' 107 4 3 3KE2 GLY C 1 ? UNP A1S9Q7 ? ? 'expression tag' 0 5 3 3KE2 VAL C 108 ? UNP A1S9Q7 ASP 107 'see remark 999' 107 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KE2 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M K2NO3, 20.0000% PEG-3350, No Buffer pH 6.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2009-07-08 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97917 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91162,0.97917 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3KE2 _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 29.921 _reflns.number_obs 13572 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_netI_over_sigmaI 12.080 _reflns.percent_possible_obs 98.700 _reflns.B_iso_Wilson_estimate 51.638 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.50 2.59 4891 ? 2530 0.423 1.8 ? ? ? ? ? 98.30 1 1 2.59 2.69 4741 ? 2444 0.324 2.4 ? ? ? ? ? 99.10 2 1 2.69 2.81 4905 ? 2521 0.252 3.2 ? ? ? ? ? 98.80 3 1 2.81 2.96 5004 ? 2574 0.174 4.5 ? ? ? ? ? 99.30 4 1 2.96 3.15 5157 ? 2642 0.120 6.4 ? ? ? ? ? 99.00 5 1 3.15 3.39 4843 ? 2499 0.076 9.7 ? ? ? ? ? 99.00 6 1 3.39 3.73 4926 ? 2527 0.047 15.1 ? ? ? ? ? 98.80 7 1 3.73 4.26 4895 ? 2509 0.033 21.2 ? ? ? ? ? 98.70 8 1 4.26 5.35 4982 ? 2545 0.027 25.7 ? ? ? ? ? 98.60 9 1 5.35 29.921 5070 ? 2561 0.022 30.5 ? ? ? ? ? 97.30 10 1 # _refine.entry_id 3KE2 _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 29.921 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.490 _refine.ls_number_reflns_obs 13554 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. TLS GROUPS WERE ASSIGNED WITH THE AID OF TLS MOTION SERVER. 5. NITRATE IONS (NO3)FROM THE CRYSTALLIZATION SOLUTION; AND ETHYLENE GLYCOLS (EDO)USED AS A CRYOPROTECTANT ARE MODELED INTO THE STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_R_work 0.214 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.254 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 667 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 22.077 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.550 _refine.aniso_B[2][2] -1.240 _refine.aniso_B[3][3] 0.690 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.908 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.484 _refine.pdbx_overall_ESU_R_Free 0.281 _refine.overall_SU_ML 0.227 _refine.overall_SU_B 23.302 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 62.15 _refine.B_iso_min 6.60 _refine.occupancy_max 1.00 _refine.occupancy_min 0.19 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2318 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 2398 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 29.921 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2439 0.015 0.021 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1664 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 3296 1.479 1.943 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 4019 0.851 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 309 2.305 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 117 28.173 22.564 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 419 10.603 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 24 13.763 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 358 0.052 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2746 0.005 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 532 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1493 0.462 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 614 0.097 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2368 0.901 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 946 1.546 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 920 2.412 4.500 ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 1076 0.330 0.500 1 ? ? ? 'X-RAY DIFFRACTION' 1 2 'MEDIUM POSITIONAL' B 1076 0.390 0.500 2 ? ? ? 'X-RAY DIFFRACTION' 1 3 'MEDIUM POSITIONAL' C 1076 0.430 0.500 3 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 93 0.770 5.000 4 ? ? ? 'X-RAY DIFFRACTION' 1 2 'LOOSE POSITIONAL' B 93 1.210 5.000 5 ? ? ? 'X-RAY DIFFRACTION' 1 3 'LOOSE POSITIONAL' C 93 1.500 5.000 6 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 1076 0.490 2.000 7 ? ? ? 'X-RAY DIFFRACTION' 1 2 'MEDIUM THERMAL' B 1076 0.450 2.000 8 ? ? ? 'X-RAY DIFFRACTION' 1 3 'MEDIUM THERMAL' C 1076 0.530 2.000 9 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 93 0.930 10.000 10 ? ? ? 'X-RAY DIFFRACTION' 1 2 'LOOSE THERMAL' B 93 0.960 10.000 11 ? ? ? 'X-RAY DIFFRACTION' 1 3 'LOOSE THERMAL' C 93 1.070 10.000 12 ? ? ? # _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.565 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.380 _refine_ls_shell.number_reflns_R_work 914 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.330 _refine_ls_shell.R_factor_R_free 0.478 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 967 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 1 3 C # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 4 A 10 A 67 ? . . . . . . . . 1 2 1 4 B 10 B 67 ? . . . . . . . . 1 3 1 4 C 10 C 67 ? . . . . . . . . 1 1 2 6 A 68 A 74 ? . . . . . . . . 1 2 2 6 B 68 B 74 ? . . . . . . . . 1 3 2 6 C 68 C 74 ? . . . . . . . . 1 1 3 4 A 75 A 103 ? . . . . . . . . 1 2 3 4 B 75 B 103 ? . . . . . . . . 1 3 3 4 C 75 C 103 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3KE2 _struct.title 'CRYSTAL STRUCTURE OF a DUF2131 family protein (SAMA_2911) FROM SHEWANELLA AMAZONENSIS SB2B AT 2.50 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3KE2 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS AND STATIC LIGHT SCATTERING WITH ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 13 ? ALA A 32 ? SER A 12 ALA A 31 1 ? 20 HELX_P HELX_P2 2 ASN A 35 ? GLY A 44 ? ASN A 34 GLY A 43 1 ? 10 HELX_P HELX_P3 3 PRO A 46 ? SER A 56 ? PRO A 45 SER A 55 1 ? 11 HELX_P HELX_P4 4 PHE A 57 ? GLY A 61 ? PHE A 56 GLY A 60 5 ? 5 HELX_P HELX_P5 5 SER A 87 ? GLY A 103 ? SER A 86 GLY A 102 1 ? 17 HELX_P HELX_P6 6 ASP A 106 ? ALA A 111 ? ASP A 105 ALA A 110 1 ? 6 HELX_P HELX_P7 7 SER B 13 ? ALA B 32 ? SER B 12 ALA B 31 1 ? 20 HELX_P HELX_P8 8 ASN B 35 ? GLY B 44 ? ASN B 34 GLY B 43 1 ? 10 HELX_P HELX_P9 9 PRO B 46 ? SER B 56 ? PRO B 45 SER B 55 1 ? 11 HELX_P HELX_P10 10 PHE B 57 ? GLY B 61 ? PHE B 56 GLY B 60 5 ? 5 HELX_P HELX_P11 11 SER B 87 ? GLY B 103 ? SER B 86 GLY B 102 1 ? 17 HELX_P HELX_P12 12 SER C 13 ? ALA C 32 ? SER C 12 ALA C 31 1 ? 20 HELX_P HELX_P13 13 ASN C 35 ? GLY C 44 ? ASN C 34 GLY C 43 1 ? 10 HELX_P HELX_P14 14 PRO C 46 ? SER C 56 ? PRO C 45 SER C 55 1 ? 11 HELX_P HELX_P15 15 PHE C 57 ? GLY C 61 ? PHE C 56 GLY C 60 5 ? 5 HELX_P HELX_P16 16 SER C 87 ? GLY C 103 ? SER C 86 GLY C 102 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 28 C ? ? ? 1_555 A MSE 29 N ? ? A LEU 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale2 covale both ? A MSE 29 C ? ? ? 1_555 A ASP 30 N ? ? A MSE 28 A ASP 29 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale3 covale both ? A GLY 44 C ? ? ? 1_555 A MSE 45 N ? ? A GLY 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale4 covale both ? A MSE 45 C ? ? ? 1_555 A PRO 46 N ? ? A MSE 44 A PRO 45 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale5 covale both ? A TRP 90 C ? ? ? 1_555 A MSE 91 N ? ? A TRP 89 A MSE 90 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale6 covale both ? A MSE 91 C ? ? ? 1_555 A ASP 92 N ? ? A MSE 90 A ASP 91 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale7 covale both ? B LEU 28 C ? ? ? 1_555 B MSE 29 N ? ? B LEU 27 B MSE 28 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale8 covale both ? B MSE 29 C ? ? ? 1_555 B ASP 30 N ? ? B MSE 28 B ASP 29 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? B GLY 44 C ? ? ? 1_555 B MSE 45 N ? ? B GLY 43 B MSE 44 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale10 covale both ? B MSE 45 C ? ? ? 1_555 B PRO 46 N ? ? B MSE 44 B PRO 45 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale11 covale both ? B TRP 90 C ? ? ? 1_555 B MSE 91 N ? ? B TRP 89 B MSE 90 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? B MSE 91 C ? ? ? 1_555 B ASP 92 N ? ? B MSE 90 B ASP 91 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale13 covale both ? C LEU 28 C ? ? ? 1_555 C MSE 29 N ? ? C LEU 27 C MSE 28 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? C MSE 29 C ? ? ? 1_555 C ASP 30 N ? ? C MSE 28 C ASP 29 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale15 covale both ? C GLY 44 C ? ? ? 1_555 C MSE 45 N ? ? C GLY 43 C MSE 44 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale16 covale both ? C MSE 45 C ? ? ? 1_555 C PRO 46 N ? ? C MSE 44 C PRO 45 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale17 covale both ? C TRP 90 C ? ? ? 1_555 C MSE 91 N ? ? C TRP 89 C MSE 90 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale18 covale both ? C MSE 91 C ? ? ? 1_555 C ASP 92 N ? ? C MSE 90 C ASP 91 1_555 ? ? ? ? ? ? ? 1.343 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 63 ? VAL A 67 ? GLU A 62 VAL A 66 A 2 TYR A 77 ? THR A 82 ? TYR A 76 THR A 81 B 1 GLU B 63 ? VAL B 67 ? GLU B 62 VAL B 66 B 2 TYR B 77 ? THR B 82 ? TYR B 76 THR B 81 C 1 GLU C 63 ? VAL C 67 ? GLU C 62 VAL C 66 C 2 TYR C 77 ? THR C 82 ? TYR C 76 THR C 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 65 ? N GLU A 64 O ARG A 79 ? O ARG A 78 B 1 2 N VAL B 67 ? N VAL B 66 O TYR B 77 ? O TYR B 76 C 1 2 N GLU C 65 ? N GLU C 64 O ARG C 79 ? O ARG C 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NO3 117 ? 4 'BINDING SITE FOR RESIDUE NO3 A 117' AC2 Software B NO3 117 ? 6 'BINDING SITE FOR RESIDUE NO3 B 117' AC3 Software C NO3 117 ? 6 'BINDING SITE FOR RESIDUE NO3 C 117' AC4 Software C EDO 118 ? 3 'BINDING SITE FOR RESIDUE EDO C 118' AC5 Software C EDO 119 ? 5 'BINDING SITE FOR RESIDUE EDO C 119' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASN A 35 ? ASN A 34 . ? 1_555 ? 2 AC1 4 LEU A 36 ? LEU A 35 . ? 1_555 ? 3 AC1 4 LEU A 37 ? LEU A 36 . ? 1_555 ? 4 AC1 4 ARG A 72 ? ARG A 71 . ? 4_566 ? 5 AC2 6 ASN B 35 ? ASN B 34 . ? 1_555 ? 6 AC2 6 LEU B 36 ? LEU B 35 . ? 1_555 ? 7 AC2 6 LEU B 37 ? LEU B 36 . ? 1_555 ? 8 AC2 6 ALA B 75 ? ALA B 74 . ? 1_555 ? 9 AC2 6 TYR B 78 ? TYR B 77 . ? 1_555 ? 10 AC2 6 HOH J . ? HOH B 130 . ? 1_555 ? 11 AC3 6 ARG B 72 ? ARG B 71 . ? 3_655 ? 12 AC3 6 ASN C 35 ? ASN C 34 . ? 1_555 ? 13 AC3 6 LEU C 36 ? LEU C 35 . ? 1_555 ? 14 AC3 6 LEU C 37 ? LEU C 36 . ? 1_555 ? 15 AC3 6 ARG C 47 ? ARG C 46 . ? 1_555 ? 16 AC3 6 EDO H . ? EDO C 119 . ? 1_555 ? 17 AC4 3 ASN C 35 ? ASN C 34 . ? 1_555 ? 18 AC4 3 HIS C 73 ? HIS C 72 . ? 3_655 ? 19 AC4 3 TYR C 77 ? TYR C 76 . ? 1_555 ? 20 AC5 5 HOH J . ? HOH B 126 . ? 3_655 ? 21 AC5 5 PHE C 66 ? PHE C 65 . ? 1_555 ? 22 AC5 5 GLN C 68 ? GLN C 67 . ? 1_555 ? 23 AC5 5 GLY C 76 ? GLY C 75 . ? 1_555 ? 24 AC5 5 NO3 F . ? NO3 C 117 . ? 1_555 ? # _atom_sites.entry_id 3KE2 _atom_sites.fract_transf_matrix[1][1] 0.015042 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009949 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008727 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 THR 3 2 ? ? ? A . n A 1 4 GLN 4 3 ? ? ? A . n A 1 5 ASP 5 4 ? ? ? A . n A 1 6 ASN 6 5 ? ? ? A . n A 1 7 ALA 7 6 ? ? ? A . n A 1 8 SER 8 7 ? ? ? A . n A 1 9 GLY 9 8 8 GLY GLY A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 GLN 11 10 10 GLN GLN A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 SER 13 12 12 SER SER A . n A 1 14 LYS 14 13 13 LYS LYS A . n A 1 15 GLN 15 14 14 GLN GLN A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 PHE 19 18 18 PHE PHE A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 ARG 21 20 20 ARG ARG A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 TYR 24 23 23 TYR TYR A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 HIS 27 26 26 HIS HIS A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 MSE 29 28 28 MSE MSE A . n A 1 30 ASP 30 29 29 ASP ASP A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 ARG 33 32 32 ARG ARG A . n A 1 34 HIS 34 33 33 HIS HIS A . n A 1 35 ASN 35 34 34 ASN ASN A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 GLY 44 43 43 GLY GLY A . n A 1 45 MSE 45 44 44 MSE MSE A . n A 1 46 PRO 46 45 45 PRO PRO A . n A 1 47 ARG 47 46 46 ARG ARG A . n A 1 48 ARG 48 47 47 ARG ARG A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 ASP 52 51 51 ASP ASP A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 ILE 54 53 53 ILE ILE A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 ALA 58 57 57 ALA ALA A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ILE 60 59 59 ILE ILE A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 ILE 62 61 61 ILE ILE A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 PHE 66 65 65 PHE PHE A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 GLN 68 67 67 GLN GLN A . n A 1 69 ASP 69 68 68 ASP ASP A . n A 1 70 GLY 70 69 69 GLY GLY A . n A 1 71 GLU 71 70 70 GLU GLU A . n A 1 72 ARG 72 71 71 ARG ARG A . n A 1 73 HIS 73 72 72 HIS HIS A . n A 1 74 ASN 74 73 73 ASN ASN A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 TYR 77 76 76 TYR TYR A . n A 1 78 TYR 78 77 77 TYR TYR A . n A 1 79 ARG 79 78 78 ARG ARG A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 ARG 81 80 80 ARG ARG A . n A 1 82 THR 82 81 81 THR THR A . n A 1 83 TRP 83 82 82 TRP TRP A . n A 1 84 GLY 84 83 83 GLY GLY A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 ILE 86 85 85 ILE ILE A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 TRP 90 89 89 TRP TRP A . n A 1 91 MSE 91 90 90 MSE MSE A . n A 1 92 ASP 92 91 91 ASP ASP A . n A 1 93 THR 93 92 92 THR THR A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 ASP 96 95 95 ASP ASP A . n A 1 97 GLU 97 96 96 GLU GLU A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 SER 100 99 99 SER SER A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 GLY 103 102 102 GLY GLY A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 ASP 105 104 104 ASP ASP A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 ALA 107 106 106 ALA ALA A . n A 1 108 VAL 108 107 107 VAL VAL A . n A 1 109 GLY 109 108 108 GLY GLY A . n A 1 110 GLN 110 109 109 GLN GLN A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 THR 112 111 ? ? ? A . n A 1 113 ALA 113 112 ? ? ? A . n A 1 114 GLY 114 113 ? ? ? A . n A 1 115 ASN 115 114 ? ? ? A . n A 1 116 GLY 116 115 ? ? ? A . n A 1 117 ALA 117 116 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 THR 3 2 ? ? ? B . n B 1 4 GLN 4 3 ? ? ? B . n B 1 5 ASP 5 4 ? ? ? B . n B 1 6 ASN 6 5 ? ? ? B . n B 1 7 ALA 7 6 ? ? ? B . n B 1 8 SER 8 7 ? ? ? B . n B 1 9 GLY 9 8 ? ? ? B . n B 1 10 ASP 10 9 ? ? ? B . n B 1 11 GLN 11 10 ? ? ? B . n B 1 12 VAL 12 11 11 VAL VAL B . n B 1 13 SER 13 12 12 SER SER B . n B 1 14 LYS 14 13 13 LYS LYS B . n B 1 15 GLN 15 14 14 GLN GLN B . n B 1 16 HIS 16 15 15 HIS HIS B . n B 1 17 LYS 17 16 16 LYS LYS B . n B 1 18 ALA 18 17 17 ALA ALA B . n B 1 19 PHE 19 18 18 PHE PHE B . n B 1 20 LEU 20 19 19 LEU LEU B . n B 1 21 ARG 21 20 20 ARG ARG B . n B 1 22 LYS 22 21 21 LYS LYS B . n B 1 23 LEU 23 22 22 LEU LEU B . n B 1 24 TYR 24 23 23 TYR TYR B . n B 1 25 LEU 25 24 24 LEU LEU B . n B 1 26 ALA 26 25 25 ALA ALA B . n B 1 27 HIS 27 26 26 HIS HIS B . n B 1 28 LEU 28 27 27 LEU LEU B . n B 1 29 MSE 29 28 28 MSE MSE B . n B 1 30 ASP 30 29 29 ASP ASP B . n B 1 31 ASP 31 30 30 ASP ASP B . n B 1 32 ALA 32 31 31 ALA ALA B . n B 1 33 ARG 33 32 32 ARG ARG B . n B 1 34 HIS 34 33 33 HIS HIS B . n B 1 35 ASN 35 34 34 ASN ASN B . n B 1 36 LEU 36 35 35 LEU LEU B . n B 1 37 LEU 37 36 36 LEU LEU B . n B 1 38 SER 38 37 37 SER SER B . n B 1 39 LEU 39 38 38 LEU LEU B . n B 1 40 GLY 40 39 39 GLY GLY B . n B 1 41 LYS 41 40 40 LYS LYS B . n B 1 42 LEU 42 41 41 LEU LEU B . n B 1 43 THR 43 42 42 THR THR B . n B 1 44 GLY 44 43 43 GLY GLY B . n B 1 45 MSE 45 44 44 MSE MSE B . n B 1 46 PRO 46 45 45 PRO PRO B . n B 1 47 ARG 47 46 46 ARG ARG B . n B 1 48 ARG 48 47 47 ARG ARG B . n B 1 49 THR 49 48 48 THR THR B . n B 1 50 LEU 50 49 49 LEU LEU B . n B 1 51 GLN 51 50 50 GLN GLN B . n B 1 52 ASP 52 51 51 ASP ASP B . n B 1 53 ALA 53 52 52 ALA ALA B . n B 1 54 ILE 54 53 53 ILE ILE B . n B 1 55 ALA 55 54 54 ALA ALA B . n B 1 56 SER 56 55 55 SER SER B . n B 1 57 PHE 57 56 56 PHE PHE B . n B 1 58 ALA 58 57 57 ALA ALA B . n B 1 59 ASP 59 58 58 ASP ASP B . n B 1 60 ILE 60 59 59 ILE ILE B . n B 1 61 GLY 61 60 60 GLY GLY B . n B 1 62 ILE 62 61 61 ILE ILE B . n B 1 63 GLU 63 62 62 GLU GLU B . n B 1 64 VAL 64 63 63 VAL VAL B . n B 1 65 GLU 65 64 64 GLU GLU B . n B 1 66 PHE 66 65 65 PHE PHE B . n B 1 67 VAL 67 66 66 VAL VAL B . n B 1 68 GLN 68 67 67 GLN GLN B . n B 1 69 ASP 69 68 68 ASP ASP B . n B 1 70 GLY 70 69 69 GLY GLY B . n B 1 71 GLU 71 70 70 GLU GLU B . n B 1 72 ARG 72 71 71 ARG ARG B . n B 1 73 HIS 73 72 72 HIS HIS B . n B 1 74 ASN 74 73 73 ASN ASN B . n B 1 75 ALA 75 74 74 ALA ALA B . n B 1 76 GLY 76 75 75 GLY GLY B . n B 1 77 TYR 77 76 76 TYR TYR B . n B 1 78 TYR 78 77 77 TYR TYR B . n B 1 79 ARG 79 78 78 ARG ARG B . n B 1 80 ILE 80 79 79 ILE ILE B . n B 1 81 ARG 81 80 80 ARG ARG B . n B 1 82 THR 82 81 81 THR THR B . n B 1 83 TRP 83 82 82 TRP TRP B . n B 1 84 GLY 84 83 83 GLY GLY B . n B 1 85 PRO 85 84 84 PRO PRO B . n B 1 86 ILE 86 85 85 ILE ILE B . n B 1 87 SER 87 86 86 SER SER B . n B 1 88 SER 88 87 87 SER SER B . n B 1 89 ALA 89 88 88 ALA ALA B . n B 1 90 TRP 90 89 89 TRP TRP B . n B 1 91 MSE 91 90 90 MSE MSE B . n B 1 92 ASP 92 91 91 ASP ASP B . n B 1 93 THR 93 92 92 THR THR B . n B 1 94 HIS 94 93 93 HIS HIS B . n B 1 95 VAL 95 94 94 VAL VAL B . n B 1 96 ASP 96 95 95 ASP ASP B . n B 1 97 GLU 97 96 96 GLU GLU B . n B 1 98 VAL 98 97 97 VAL VAL B . n B 1 99 LYS 99 98 98 LYS LYS B . n B 1 100 SER 100 99 99 SER SER B . n B 1 101 LEU 101 100 100 LEU LEU B . n B 1 102 LEU 102 101 101 LEU LEU B . n B 1 103 GLY 103 102 102 GLY GLY B . n B 1 104 VAL 104 103 103 VAL VAL B . n B 1 105 ASP 105 104 104 ASP ASP B . n B 1 106 ASP 106 105 105 ASP ASP B . n B 1 107 ALA 107 106 106 ALA ALA B . n B 1 108 VAL 108 107 ? ? ? B . n B 1 109 GLY 109 108 ? ? ? B . n B 1 110 GLN 110 109 ? ? ? B . n B 1 111 ALA 111 110 ? ? ? B . n B 1 112 THR 112 111 ? ? ? B . n B 1 113 ALA 113 112 ? ? ? B . n B 1 114 GLY 114 113 ? ? ? B . n B 1 115 ASN 115 114 ? ? ? B . n B 1 116 GLY 116 115 ? ? ? B . n B 1 117 ALA 117 116 ? ? ? B . n C 1 1 GLY 1 0 ? ? ? C . n C 1 2 MSE 2 1 ? ? ? C . n C 1 3 THR 3 2 ? ? ? C . n C 1 4 GLN 4 3 ? ? ? C . n C 1 5 ASP 5 4 ? ? ? C . n C 1 6 ASN 6 5 ? ? ? C . n C 1 7 ALA 7 6 ? ? ? C . n C 1 8 SER 8 7 ? ? ? C . n C 1 9 GLY 9 8 ? ? ? C . n C 1 10 ASP 10 9 ? ? ? C . n C 1 11 GLN 11 10 ? ? ? C . n C 1 12 VAL 12 11 11 VAL VAL C . n C 1 13 SER 13 12 12 SER SER C . n C 1 14 LYS 14 13 13 LYS LYS C . n C 1 15 GLN 15 14 14 GLN GLN C . n C 1 16 HIS 16 15 15 HIS HIS C . n C 1 17 LYS 17 16 16 LYS LYS C . n C 1 18 ALA 18 17 17 ALA ALA C . n C 1 19 PHE 19 18 18 PHE PHE C . n C 1 20 LEU 20 19 19 LEU LEU C . n C 1 21 ARG 21 20 20 ARG ARG C . n C 1 22 LYS 22 21 21 LYS LYS C . n C 1 23 LEU 23 22 22 LEU LEU C . n C 1 24 TYR 24 23 23 TYR TYR C . n C 1 25 LEU 25 24 24 LEU LEU C . n C 1 26 ALA 26 25 25 ALA ALA C . n C 1 27 HIS 27 26 26 HIS HIS C . n C 1 28 LEU 28 27 27 LEU LEU C . n C 1 29 MSE 29 28 28 MSE MSE C . n C 1 30 ASP 30 29 29 ASP ASP C . n C 1 31 ASP 31 30 30 ASP ASP C . n C 1 32 ALA 32 31 31 ALA ALA C . n C 1 33 ARG 33 32 32 ARG ARG C . n C 1 34 HIS 34 33 33 HIS HIS C . n C 1 35 ASN 35 34 34 ASN ASN C . n C 1 36 LEU 36 35 35 LEU LEU C . n C 1 37 LEU 37 36 36 LEU LEU C . n C 1 38 SER 38 37 37 SER SER C . n C 1 39 LEU 39 38 38 LEU LEU C . n C 1 40 GLY 40 39 39 GLY GLY C . n C 1 41 LYS 41 40 40 LYS LYS C . n C 1 42 LEU 42 41 41 LEU LEU C . n C 1 43 THR 43 42 42 THR THR C . n C 1 44 GLY 44 43 43 GLY GLY C . n C 1 45 MSE 45 44 44 MSE MSE C . n C 1 46 PRO 46 45 45 PRO PRO C . n C 1 47 ARG 47 46 46 ARG ARG C . n C 1 48 ARG 48 47 47 ARG ARG C . n C 1 49 THR 49 48 48 THR THR C . n C 1 50 LEU 50 49 49 LEU LEU C . n C 1 51 GLN 51 50 50 GLN GLN C . n C 1 52 ASP 52 51 51 ASP ASP C . n C 1 53 ALA 53 52 52 ALA ALA C . n C 1 54 ILE 54 53 53 ILE ILE C . n C 1 55 ALA 55 54 54 ALA ALA C . n C 1 56 SER 56 55 55 SER SER C . n C 1 57 PHE 57 56 56 PHE PHE C . n C 1 58 ALA 58 57 57 ALA ALA C . n C 1 59 ASP 59 58 58 ASP ASP C . n C 1 60 ILE 60 59 59 ILE ILE C . n C 1 61 GLY 61 60 60 GLY GLY C . n C 1 62 ILE 62 61 61 ILE ILE C . n C 1 63 GLU 63 62 62 GLU GLU C . n C 1 64 VAL 64 63 63 VAL VAL C . n C 1 65 GLU 65 64 64 GLU GLU C . n C 1 66 PHE 66 65 65 PHE PHE C . n C 1 67 VAL 67 66 66 VAL VAL C . n C 1 68 GLN 68 67 67 GLN GLN C . n C 1 69 ASP 69 68 68 ASP ASP C . n C 1 70 GLY 70 69 69 GLY GLY C . n C 1 71 GLU 71 70 70 GLU GLU C . n C 1 72 ARG 72 71 71 ARG ARG C . n C 1 73 HIS 73 72 72 HIS HIS C . n C 1 74 ASN 74 73 73 ASN ASN C . n C 1 75 ALA 75 74 74 ALA ALA C . n C 1 76 GLY 76 75 75 GLY GLY C . n C 1 77 TYR 77 76 76 TYR TYR C . n C 1 78 TYR 78 77 77 TYR TYR C . n C 1 79 ARG 79 78 78 ARG ARG C . n C 1 80 ILE 80 79 79 ILE ILE C . n C 1 81 ARG 81 80 80 ARG ARG C . n C 1 82 THR 82 81 81 THR THR C . n C 1 83 TRP 83 82 82 TRP TRP C . n C 1 84 GLY 84 83 83 GLY GLY C . n C 1 85 PRO 85 84 84 PRO PRO C . n C 1 86 ILE 86 85 85 ILE ILE C . n C 1 87 SER 87 86 86 SER SER C . n C 1 88 SER 88 87 87 SER SER C . n C 1 89 ALA 89 88 88 ALA ALA C . n C 1 90 TRP 90 89 89 TRP TRP C . n C 1 91 MSE 91 90 90 MSE MSE C . n C 1 92 ASP 92 91 91 ASP ASP C . n C 1 93 THR 93 92 92 THR THR C . n C 1 94 HIS 94 93 93 HIS HIS C . n C 1 95 VAL 95 94 94 VAL VAL C . n C 1 96 ASP 96 95 95 ASP ASP C . n C 1 97 GLU 97 96 96 GLU GLU C . n C 1 98 VAL 98 97 97 VAL VAL C . n C 1 99 LYS 99 98 98 LYS LYS C . n C 1 100 SER 100 99 99 SER SER C . n C 1 101 LEU 101 100 100 LEU LEU C . n C 1 102 LEU 102 101 101 LEU LEU C . n C 1 103 GLY 103 102 102 GLY GLY C . n C 1 104 VAL 104 103 103 VAL VAL C . n C 1 105 ASP 105 104 104 ASP ASP C . n C 1 106 ASP 106 105 105 ASP ASP C . n C 1 107 ALA 107 106 106 ALA ALA C . n C 1 108 VAL 108 107 107 VAL VAL C . n C 1 109 GLY 109 108 ? ? ? C . n C 1 110 GLN 110 109 ? ? ? C . n C 1 111 ALA 111 110 ? ? ? C . n C 1 112 THR 112 111 ? ? ? C . n C 1 113 ALA 113 112 ? ? ? C . n C 1 114 GLY 114 113 ? ? ? C . n C 1 115 ASN 115 114 ? ? ? C . n C 1 116 GLY 116 115 ? ? ? C . n C 1 117 ALA 117 116 ? ? ? C . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NO3 1 117 1 NO3 NO3 A . E 2 NO3 1 117 3 NO3 NO3 B . F 2 NO3 1 117 2 NO3 NO3 C . G 3 EDO 1 118 4 EDO EDO C . H 3 EDO 1 119 5 EDO EDO C . I 4 HOH 1 118 11 HOH HOH A . I 4 HOH 2 119 12 HOH HOH A . I 4 HOH 3 120 13 HOH HOH A . I 4 HOH 4 121 14 HOH HOH A . I 4 HOH 5 122 15 HOH HOH A . I 4 HOH 6 123 16 HOH HOH A . I 4 HOH 7 124 17 HOH HOH A . I 4 HOH 8 125 18 HOH HOH A . I 4 HOH 9 126 19 HOH HOH A . I 4 HOH 10 127 35 HOH HOH A . I 4 HOH 11 128 36 HOH HOH A . I 4 HOH 12 129 37 HOH HOH A . I 4 HOH 13 130 38 HOH HOH A . I 4 HOH 14 131 39 HOH HOH A . I 4 HOH 15 132 40 HOH HOH A . I 4 HOH 16 133 41 HOH HOH A . I 4 HOH 17 134 42 HOH HOH A . I 4 HOH 18 135 43 HOH HOH A . I 4 HOH 19 136 53 HOH HOH A . I 4 HOH 20 137 57 HOH HOH A . I 4 HOH 21 138 58 HOH HOH A . I 4 HOH 22 139 59 HOH HOH A . I 4 HOH 23 140 60 HOH HOH A . J 4 HOH 1 118 7 HOH HOH B . J 4 HOH 2 119 20 HOH HOH B . J 4 HOH 3 120 21 HOH HOH B . J 4 HOH 4 121 22 HOH HOH B . J 4 HOH 5 122 23 HOH HOH B . J 4 HOH 6 123 24 HOH HOH B . J 4 HOH 7 124 25 HOH HOH B . J 4 HOH 8 125 26 HOH HOH B . J 4 HOH 9 126 27 HOH HOH B . J 4 HOH 10 127 28 HOH HOH B . J 4 HOH 11 128 29 HOH HOH B . J 4 HOH 12 129 30 HOH HOH B . J 4 HOH 13 130 44 HOH HOH B . J 4 HOH 14 131 45 HOH HOH B . J 4 HOH 15 132 46 HOH HOH B . J 4 HOH 16 133 47 HOH HOH B . J 4 HOH 17 134 48 HOH HOH B . J 4 HOH 18 135 54 HOH HOH B . J 4 HOH 19 136 56 HOH HOH B . K 4 HOH 1 120 6 HOH HOH C . K 4 HOH 2 121 8 HOH HOH C . K 4 HOH 3 122 9 HOH HOH C . K 4 HOH 4 123 10 HOH HOH C . K 4 HOH 5 124 31 HOH HOH C . K 4 HOH 6 125 32 HOH HOH C . K 4 HOH 7 126 33 HOH HOH C . K 4 HOH 8 127 34 HOH HOH C . K 4 HOH 9 128 49 HOH HOH C . K 4 HOH 10 129 50 HOH HOH C . K 4 HOH 11 130 51 HOH HOH C . K 4 HOH 12 131 52 HOH HOH C . K 4 HOH 13 132 55 HOH HOH C . K 4 HOH 14 133 61 HOH HOH C . K 4 HOH 15 134 62 HOH HOH C . K 4 HOH 16 135 63 HOH HOH C . K 4 HOH 17 136 64 HOH HOH C . K 4 HOH 18 137 65 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 29 A MSE 28 ? MET SELENOMETHIONINE 2 A MSE 45 A MSE 44 ? MET SELENOMETHIONINE 3 A MSE 91 A MSE 90 ? MET SELENOMETHIONINE 4 B MSE 29 B MSE 28 ? MET SELENOMETHIONINE 5 B MSE 45 B MSE 44 ? MET SELENOMETHIONINE 6 B MSE 91 B MSE 90 ? MET SELENOMETHIONINE 7 C MSE 29 C MSE 28 ? MET SELENOMETHIONINE 8 C MSE 45 C MSE 44 ? MET SELENOMETHIONINE 9 C MSE 91 C MSE 90 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,D,E,I,J 2 1,2 C,F,G,H,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1430 ? 1 MORE -6 ? 1 'SSA (A^2)' 11440 ? 2 'ABSA (A^2)' 1970 ? 2 MORE 2 ? 2 'SSA (A^2)' 11580 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 57.2915000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 127 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 20.9920 41.2860 43.4280 0.1484 0.0109 0.2189 0.0180 -0.0322 0.0153 2.0737 4.8338 2.7528 -1.6778 -0.6435 1.5548 0.0998 -0.0022 -0.0976 0.0267 -0.1752 0.0343 -0.2906 0.0463 -0.0406 'X-RAY DIFFRACTION' 2 ? refined 36.3840 18.8860 48.7100 0.1625 0.1920 0.2877 0.0887 -0.0568 -0.0091 1.6875 4.7218 2.3992 -2.2089 -0.7442 0.6169 -0.2637 0.3440 -0.0803 -0.4150 0.0606 0.0268 0.5609 0.0216 -0.0817 'X-RAY DIFFRACTION' 3 ? refined 12.6690 11.6510 33.3480 0.0585 0.1061 0.1854 -0.0288 -0.0264 -0.0144 6.6280 1.3831 2.2025 0.4843 -0.4932 -0.1126 0.0070 -0.0050 -0.0019 -0.6465 0.0131 0.0283 0.1393 0.0511 -0.0971 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 8 A 110 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 11 B 106 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 11 C 107 ? . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3KE2 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DNA SEQUENCING OF THE CLONED CONSTRUCT SHOWS A VALINE AT POSITION 107 INSTEAD OF AN ASPARTATE. THE VALINE AT POSITION 107 IS SUPPORTED BY THE ELECTRON DENSITY ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 10 ? ? -35.56 -73.72 2 1 ASP B 104 ? ? -103.49 -161.15 3 1 ASP B 105 ? ? -174.83 146.42 4 1 ASP C 105 ? ? -95.26 54.70 5 1 ALA C 106 ? ? -84.92 30.40 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 10 ? CD ? A GLN 11 CD 2 1 Y 1 A GLN 10 ? OE1 ? A GLN 11 OE1 3 1 Y 1 A GLN 10 ? NE2 ? A GLN 11 NE2 4 1 Y 1 A ARG 47 ? CD ? A ARG 48 CD 5 1 Y 1 A ARG 47 ? NE ? A ARG 48 NE 6 1 Y 1 A ARG 47 ? CZ ? A ARG 48 CZ 7 1 Y 1 A ARG 47 ? NH1 ? A ARG 48 NH1 8 1 Y 1 A ARG 47 ? NH2 ? A ARG 48 NH2 9 1 Y 1 A GLN 109 ? CG ? A GLN 110 CG 10 1 Y 1 A GLN 109 ? CD ? A GLN 110 CD 11 1 Y 1 A GLN 109 ? OE1 ? A GLN 110 OE1 12 1 Y 1 A GLN 109 ? NE2 ? A GLN 110 NE2 13 1 Y 1 B VAL 11 ? CG1 ? B VAL 12 CG1 14 1 Y 1 B VAL 11 ? CG2 ? B VAL 12 CG2 15 1 Y 1 B LYS 13 ? CD ? B LYS 14 CD 16 1 Y 1 B LYS 13 ? CE ? B LYS 14 CE 17 1 Y 1 B LYS 13 ? NZ ? B LYS 14 NZ 18 1 Y 1 B LYS 16 ? CE ? B LYS 17 CE 19 1 Y 1 B LYS 16 ? NZ ? B LYS 17 NZ 20 1 Y 1 B LEU 100 ? CG ? B LEU 101 CG 21 1 Y 1 B LEU 100 ? CD1 ? B LEU 101 CD1 22 1 Y 1 B LEU 100 ? CD2 ? B LEU 101 CD2 23 1 Y 1 C VAL 11 ? CG1 ? C VAL 12 CG1 24 1 Y 1 C VAL 11 ? CG2 ? C VAL 12 CG2 25 1 Y 1 C LYS 16 ? CD ? C LYS 17 CD 26 1 Y 1 C LYS 16 ? CE ? C LYS 17 CE 27 1 Y 1 C LYS 16 ? NZ ? C LYS 17 NZ 28 1 Y 1 C ASP 105 ? CG ? C ASP 106 CG 29 1 Y 1 C ASP 105 ? OD1 ? C ASP 106 OD1 30 1 Y 1 C ASP 105 ? OD2 ? C ASP 106 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A THR 2 ? A THR 3 4 1 Y 1 A GLN 3 ? A GLN 4 5 1 Y 1 A ASP 4 ? A ASP 5 6 1 Y 1 A ASN 5 ? A ASN 6 7 1 Y 1 A ALA 6 ? A ALA 7 8 1 Y 1 A SER 7 ? A SER 8 9 1 Y 1 A THR 111 ? A THR 112 10 1 Y 1 A ALA 112 ? A ALA 113 11 1 Y 1 A GLY 113 ? A GLY 114 12 1 Y 1 A ASN 114 ? A ASN 115 13 1 Y 1 A GLY 115 ? A GLY 116 14 1 Y 1 A ALA 116 ? A ALA 117 15 1 Y 1 B GLY 0 ? B GLY 1 16 1 Y 1 B MSE 1 ? B MSE 2 17 1 Y 1 B THR 2 ? B THR 3 18 1 Y 1 B GLN 3 ? B GLN 4 19 1 Y 1 B ASP 4 ? B ASP 5 20 1 Y 1 B ASN 5 ? B ASN 6 21 1 Y 1 B ALA 6 ? B ALA 7 22 1 Y 1 B SER 7 ? B SER 8 23 1 Y 1 B GLY 8 ? B GLY 9 24 1 Y 1 B ASP 9 ? B ASP 10 25 1 Y 1 B GLN 10 ? B GLN 11 26 1 Y 1 B VAL 107 ? B VAL 108 27 1 Y 1 B GLY 108 ? B GLY 109 28 1 Y 1 B GLN 109 ? B GLN 110 29 1 Y 1 B ALA 110 ? B ALA 111 30 1 Y 1 B THR 111 ? B THR 112 31 1 Y 1 B ALA 112 ? B ALA 113 32 1 Y 1 B GLY 113 ? B GLY 114 33 1 Y 1 B ASN 114 ? B ASN 115 34 1 Y 1 B GLY 115 ? B GLY 116 35 1 Y 1 B ALA 116 ? B ALA 117 36 1 Y 1 C GLY 0 ? C GLY 1 37 1 Y 1 C MSE 1 ? C MSE 2 38 1 Y 1 C THR 2 ? C THR 3 39 1 Y 1 C GLN 3 ? C GLN 4 40 1 Y 1 C ASP 4 ? C ASP 5 41 1 Y 1 C ASN 5 ? C ASN 6 42 1 Y 1 C ALA 6 ? C ALA 7 43 1 Y 1 C SER 7 ? C SER 8 44 1 Y 1 C GLY 8 ? C GLY 9 45 1 Y 1 C ASP 9 ? C ASP 10 46 1 Y 1 C GLN 10 ? C GLN 11 47 1 Y 1 C GLY 108 ? C GLY 109 48 1 Y 1 C GLN 109 ? C GLN 110 49 1 Y 1 C ALA 110 ? C ALA 111 50 1 Y 1 C THR 111 ? C THR 112 51 1 Y 1 C ALA 112 ? C ALA 113 52 1 Y 1 C GLY 113 ? C GLY 114 53 1 Y 1 C ASN 114 ? C ASN 115 54 1 Y 1 C GLY 115 ? C GLY 116 55 1 Y 1 C ALA 116 ? C ALA 117 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NITRATE ION' NO3 3 1,2-ETHANEDIOL EDO 4 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'light scattering' ? 2 1 'gel filtration' ? 3 2 'light scattering' ? 4 2 'gel filtration' ? #