HEADER IMMUNE SYSTEM 14-DEC-09 3L1O TITLE CRYSTAL STRUCTURE OF MONOCLONAL ANTIBODY MN423 FAB FRAGMENT WITH FREE TITLE 2 COMBINING SITE, CRYSTALLIZED IN THE PRESENCE OF ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOCLONAL ANTIBODY FAB FRAGMENT MN423 H CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MONOCLONAL ANTIBODY FAB FRAGMENT MN423 L CHAIN; COMPND 6 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS MONOCLONAL ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.SKRABANA,J.SEVCIK REVDAT 4 01-NOV-23 3L1O 1 REMARK LINK REVDAT 3 13-JUL-11 3L1O 1 VERSN REVDAT 2 23-JUN-10 3L1O 1 JRNL REVDAT 1 16-MAR-10 3L1O 0 JRNL AUTH R.SKRABANA,R.DVORSKY,J.SEVCIK,M.NOVAK JRNL TITL MONOCLONAL ANTIBODY MN423 AS A STABLE MOLD FACILITATES JRNL TITL 2 STRUCTURE DETERMINATION OF DISORDERED TAU PROTEIN JRNL REF J.STRUCT.BIOL. V. 171 74 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20184958 JRNL DOI 10.1016/J.JSB.2010.02.016 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.8 REMARK 3 NUMBER OF REFLECTIONS : 23431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2091 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.39000 REMARK 3 B22 (A**2) : -1.94000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.334 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3444 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2316 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4694 ; 2.192 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5643 ; 1.109 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 7.699 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.766 ;23.806 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;15.350 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3850 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 697 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 570 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2373 ; 0.212 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1576 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1868 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 327 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.142 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.000 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2191 ; 1.182 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 886 ; 0.387 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3545 ; 1.929 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1309 ; 3.182 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1145 ; 4.658 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 123 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4240 11.5160 -4.0120 REMARK 3 T TENSOR REMARK 3 T11: -0.0255 T22: 0.0496 REMARK 3 T33: 0.0954 T12: -0.0035 REMARK 3 T13: -0.0148 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.3387 L22: 1.1743 REMARK 3 L33: 0.8022 L12: -0.0082 REMARK 3 L13: -0.1258 L23: -0.0870 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: 0.0191 S13: 0.1031 REMARK 3 S21: -0.0344 S22: -0.0339 S23: 0.0379 REMARK 3 S31: -0.0417 S32: 0.0227 S33: 0.0525 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 124 H 164 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9160 3.9210 28.6100 REMARK 3 T TENSOR REMARK 3 T11: -0.0022 T22: 0.0578 REMARK 3 T33: 0.0353 T12: 0.0094 REMARK 3 T13: 0.0099 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.0791 L22: 3.3751 REMARK 3 L33: 3.9315 L12: -2.0474 REMARK 3 L13: 1.3821 L23: -1.5689 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: -0.0888 S13: -0.4118 REMARK 3 S21: 0.2817 S22: 0.1777 S23: 0.0624 REMARK 3 S31: -0.2225 S32: -0.0192 S33: -0.1537 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 165 H 180 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9850 1.5420 23.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: 0.0765 REMARK 3 T33: 0.0555 T12: 0.0213 REMARK 3 T13: 0.0217 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 7.0433 L22: 5.1540 REMARK 3 L33: 6.0344 L12: -6.0223 REMARK 3 L13: 0.3760 L23: -0.4892 REMARK 3 S TENSOR REMARK 3 S11: -0.1573 S12: 0.1777 S13: 0.2879 REMARK 3 S21: -0.3010 S22: 0.1345 S23: -0.4258 REMARK 3 S31: 0.0615 S32: 0.4456 S33: 0.0227 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 181 H 227 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4340 5.9260 33.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.0216 T22: 0.0363 REMARK 3 T33: 0.0271 T12: 0.0154 REMARK 3 T13: -0.0091 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.0281 L22: 2.5845 REMARK 3 L33: 2.7722 L12: -0.0335 REMARK 3 L13: 0.3577 L23: -0.3492 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: -0.1953 S13: -0.0398 REMARK 3 S21: 0.4041 S22: 0.0642 S23: -0.1268 REMARK 3 S31: -0.2202 S32: 0.1195 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 24 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1080 -12.4100 -2.3360 REMARK 3 T TENSOR REMARK 3 T11: -0.0015 T22: 0.0478 REMARK 3 T33: 0.0937 T12: 0.0214 REMARK 3 T13: -0.0032 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 5.7947 L22: 1.3924 REMARK 3 L33: 2.8984 L12: -1.8067 REMARK 3 L13: 3.0200 L23: -0.9780 REMARK 3 S TENSOR REMARK 3 S11: 0.1580 S12: -0.0292 S13: -0.0935 REMARK 3 S21: -0.0675 S22: -0.0410 S23: 0.0437 REMARK 3 S31: 0.1275 S32: -0.1985 S33: -0.1170 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 25 L 54 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0640 -1.5340 -8.2200 REMARK 3 T TENSOR REMARK 3 T11: -0.0231 T22: 0.0800 REMARK 3 T33: 0.0742 T12: -0.0075 REMARK 3 T13: 0.0009 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.2428 L22: 3.1697 REMARK 3 L33: 2.8730 L12: -0.4600 REMARK 3 L13: 0.4727 L23: 0.8969 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: 0.2369 S13: 0.1846 REMARK 3 S21: -0.0449 S22: -0.1020 S23: -0.0893 REMARK 3 S31: 0.0703 S32: 0.2821 S33: 0.1548 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 55 L 141 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5270 -6.3280 8.4510 REMARK 3 T TENSOR REMARK 3 T11: -0.0246 T22: 0.0320 REMARK 3 T33: 0.1114 T12: -0.0176 REMARK 3 T13: -0.0097 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.8744 L22: 0.5477 REMARK 3 L33: 1.3955 L12: -0.2226 REMARK 3 L13: -0.3744 L23: -0.2700 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.0325 S13: -0.0055 REMARK 3 S21: 0.0086 S22: -0.0490 S23: -0.0384 REMARK 3 S31: 0.0687 S32: 0.1555 S33: 0.0346 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 142 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8720 -13.6370 29.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0734 REMARK 3 T33: 0.0435 T12: -0.0293 REMARK 3 T13: -0.0267 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 3.3749 L22: 1.0004 REMARK 3 L33: 4.9203 L12: 0.4160 REMARK 3 L13: -3.1337 L23: -0.4445 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.0511 S13: -0.0040 REMARK 3 S21: 0.1701 S22: 0.0041 S23: 0.0533 REMARK 3 S31: 0.1137 S32: -0.0744 S33: -0.0436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8166 REMARK 200 MONOCHROMATOR : GE(111) TRIANGULAR BENT CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2V17 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 0.1M IMIDAZOLE, 0.01M REMARK 280 ZNSO4, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.71300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 138 REMARK 465 ASP H 139 REMARK 465 THR H 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR H 141 CB OG1 CG2 REMARK 470 SER H 165 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 387 O HOH L 426 2.03 REMARK 500 O HOH L 258 O HOH L 322 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS H 98 CB CYS H 98 SG -0.117 REMARK 500 ALA H 110 CA ALA H 110 CB -0.128 REMARK 500 CYS L 134 CB CYS L 134 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 74 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP H 75 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG H 89 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG H 89 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 LEU L 106 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG L 108 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN H 164 54.93 38.98 REMARK 500 SER H 226 -179.31 -64.62 REMARK 500 ARG L 30 -124.85 58.47 REMARK 500 SER L 56 119.40 -35.98 REMARK 500 ARG L 77 72.79 27.89 REMARK 500 ALA L 84 -179.82 -172.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER H 226 THR H 227 135.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 215 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 151 OD2 REMARK 620 2 HIS L 189 ND1 111.9 REMARK 620 3 IMD L 216 N1 97.7 107.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 217 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 195 OE2 REMARK 620 2 GLU L 195 O 94.6 REMARK 620 3 THR L 197 OG1 98.0 126.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA H 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD L 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 217 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V17 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHF CORE C-TERMINAL HEXAPEPTIDE DBREF 3L1O H 1 227 PDB 3L1O 3L1O 1 227 DBREF 3L1O L 1 214 PDB 3L1O 3L1O 1 214 SEQRES 1 H 227 GLU VAL ASN LEU VAL GLU SER GLY GLY GLY LEU GLU GLN SEQRES 2 H 227 SER GLY GLY SER LEU SER LEU SER CYS ALA ALA SER GLY SEQRES 3 H 227 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 H 227 PRO PRO GLY LYS ALA LEU GLU TRP LEU ALA LEU ILE ARG SEQRES 5 H 227 ASN LYS ALA LYS GLY TYR THR THR GLU TYR SER ALA SER SEQRES 6 H 227 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 H 227 SER ILE LEU TYR LEU GLN MET ASN ALA LEU ARG ALA GLU SEQRES 8 H 227 ASP SER ALA ILE TYR TYR CYS ALA ARG ASP ASN GLY ALA SEQRES 9 H 227 ALA ARG ALA THR PHE ALA TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 227 VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL SEQRES 11 H 227 TYR PRO LEU ALA PRO GLY CYS GLY ASP THR THR GLY SER SEQRES 12 H 227 SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 H 227 GLU SER VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 H 227 SER SER VAL HIS THR PHE PRO ALA LEU LEU GLN SER GLY SEQRES 15 H 227 LEU TYR THR MET SER SER SER VAL THR VAL PRO SER SER SEQRES 16 H 227 THR TRP PRO SER GLN THR VAL THR CYS SER VAL ALA HIS SEQRES 17 H 227 PRO ALA SER SER THR THR VAL ASP LYS LYS LEU GLU PRO SEQRES 18 H 227 SER GLY PRO ILE SER THR SEQRES 1 L 214 ASP VAL GLN ILE THR GLN SER PRO SER TYR LEU ALA ALA SEQRES 2 L 214 SER PRO GLY GLU THR ILE THR ILE ASN CYS ARG ALA SER SEQRES 3 L 214 LYS SER ILE ARG LYS PHE LEU ALA TRP TYR ARG GLU LYS SEQRES 4 L 214 PRO GLY LYS THR ASN LYS LEU LEU ILE TYR SER GLY SER SEQRES 5 L 214 THR LEU GLN SER GLY THR PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG LEU SEQRES 7 L 214 GLU PRO GLU ASP PHE ALA MET TYR TYR CYS GLN GLN HIS SEQRES 8 L 214 ASN ASP TYR PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 L 214 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS HET NA H 228 1 HET ZN L 215 1 HET IMD L 216 5 HET NA L 217 1 HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETNAM IMD IMIDAZOLE FORMUL 3 NA 2(NA 1+) FORMUL 4 ZN ZN 2+ FORMUL 5 IMD C3 H5 N2 1+ FORMUL 7 HOH *434(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 ARG H 89 SER H 93 5 5 HELIX 3 3 SER H 165 SER H 167 5 3 HELIX 4 4 LEU H 168 SER H 170 5 3 HELIX 5 5 PRO H 209 SER H 212 5 4 HELIX 6 6 GLU L 79 PHE L 83 5 5 HELIX 7 7 SER L 121 SER L 127 1 7 HELIX 8 8 LYS L 183 ARG L 188 1 6 HELIX 9 9 ASN L 212 CYS L 214 5 3 SHEET 1 A 4 ASN H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 A 4 ILE H 80 MET H 85 -1 O MET H 85 N LEU H 18 SHEET 4 A 4 PHE H 70 ASP H 75 -1 N ASP H 75 O ILE H 80 SHEET 1 B 6 LEU H 11 GLU H 12 0 SHEET 2 B 6 THR H 116 VAL H 120 1 O THR H 119 N GLU H 12 SHEET 3 B 6 ALA H 94 ARG H 100 -1 N TYR H 96 O THR H 116 SHEET 4 B 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 97 SHEET 5 B 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 60 TYR H 62 -1 O GLU H 61 N LEU H 50 SHEET 1 C 4 LEU H 11 GLU H 12 0 SHEET 2 C 4 THR H 116 VAL H 120 1 O THR H 119 N GLU H 12 SHEET 3 C 4 ALA H 94 ARG H 100 -1 N TYR H 96 O THR H 116 SHEET 4 C 4 TYR H 111 TRP H 112 -1 O TYR H 111 N ARG H 100 SHEET 1 D 4 SER H 129 LEU H 133 0 SHEET 2 D 4 SER H 144 TYR H 154 -1 O LEU H 150 N TYR H 131 SHEET 3 D 4 LEU H 183 PRO H 193 -1 O MET H 186 N VAL H 151 SHEET 4 D 4 VAL H 172 GLN H 180 -1 N GLN H 180 O LEU H 183 SHEET 1 E 3 THR H 160 TRP H 163 0 SHEET 2 E 3 THR H 203 HIS H 208 -1 O SER H 205 N THR H 162 SHEET 3 E 3 THR H 213 LYS H 218 -1 O VAL H 215 N VAL H 206 SHEET 1 F 4 ILE L 4 SER L 7 0 SHEET 2 F 4 ILE L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 F 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 F 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 G 6 TYR L 10 ALA L 13 0 SHEET 2 G 6 THR L 102 LEU L 106 1 O GLU L 105 N ALA L 13 SHEET 3 G 6 MET L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 G 6 LEU L 33 GLU L 38 -1 N GLU L 38 O MET L 85 SHEET 5 G 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 G 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 H 4 TYR L 10 ALA L 13 0 SHEET 2 H 4 THR L 102 LEU L 106 1 O GLU L 105 N ALA L 13 SHEET 3 H 4 MET L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 H 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 I 4 THR L 114 PHE L 118 0 SHEET 2 I 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 I 4 TYR L 173 THR L 182 -1 O SER L 177 N CYS L 134 SHEET 4 I 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 J 4 SER L 153 ARG L 155 0 SHEET 2 J 4 ASN L 145 ILE L 150 -1 N TRP L 148 O ARG L 155 SHEET 3 J 4 SER L 191 HIS L 198 -1 O GLU L 195 N LYS L 147 SHEET 4 J 4 SER L 201 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS H 22 CYS H 98 1555 1555 2.01 SSBOND 2 CYS H 137 CYS L 214 1555 1555 2.04 SSBOND 3 CYS H 149 CYS H 204 1555 1555 2.00 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.12 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.02 LINK OD2 ASP L 151 ZN ZN L 215 1555 1555 1.91 LINK ND1 HIS L 189 ZN ZN L 215 1555 1555 2.13 LINK OE2 GLU L 195 NA NA L 217 1555 1555 3.08 LINK O GLU L 195 NA NA L 217 1555 1555 3.18 LINK OG1 THR L 197 NA NA L 217 1555 1555 2.24 LINK ZN ZN L 215 N1 IMD L 216 1555 1555 2.24 CISPEP 1 PHE H 155 PRO H 156 0 -11.67 CISPEP 2 GLU H 157 SER H 158 0 6.46 CISPEP 3 TRP H 197 PRO H 198 0 0.64 CISPEP 4 SER L 7 PRO L 8 0 -6.63 CISPEP 5 TYR L 94 PRO L 95 0 -2.29 CISPEP 6 TYR L 140 PRO L 141 0 -3.40 SITE 1 AC1 3 GLU H 91 GLU L 79 GLU L 81 SITE 1 AC2 3 ASP L 151 HIS L 189 IMD L 216 SITE 1 AC3 4 ASP L 151 ARG L 188 HIS L 189 ZN L 215 SITE 1 AC4 4 ASN L 145 LYS L 147 GLU L 195 THR L 197 CRYST1 41.330 75.426 72.701 90.00 92.86 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024195 0.000000 0.001207 0.00000 SCALE2 0.000000 0.013258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013772 0.00000