data_3L9A # _entry.id 3L9A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3L9A RCSB RCSB056994 WWPDB D_1000056994 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC40171 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3L9A _pdbx_database_status.recvd_initial_deposition_date 2010-01-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Singer, A.U.' 1 'Cuff, M.E.' 2 'Xu, X.' 3 'Cui, H.' 4 'Edwards, A.M.' 5 'Joachimiak, A.' 6 'Savchenko, A.' 7 'Midwest Center for Structural Genomics (MCSG)' 8 # _citation.id primary _citation.title 'Structure of the C-terminal domain from a Streptococcus mutans hypothetical' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Singer, A.U.' 1 primary 'Cuff, M.E.' 2 primary 'Xu, X.' 3 primary 'Cui, H.' 4 primary 'Edwards, A.M.' 5 primary 'Savchenko, A.' 6 # _cell.entry_id 3L9A _cell.length_a 64.080 _cell.length_b 64.080 _cell.length_c 39.975 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3L9A _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein' 10384.569 1 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 127 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;NKREETD(MSE)RDFFVITNSEYTFAGVHYAKGAVLHVSPTQKRAFWVIADQENFIKQVNKNIEYVEKNASPAFLQRIVE IYQVKFEGKNVH ; _entity_poly.pdbx_seq_one_letter_code_can ;NKREETDMRDFFVITNSEYTFAGVHYAKGAVLHVSPTQKRAFWVIADQENFIKQVNKNIEYVEKNASPAFLQRIVEIYQV KFEGKNVH ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier APC40171 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LYS n 1 3 ARG n 1 4 GLU n 1 5 GLU n 1 6 THR n 1 7 ASP n 1 8 MSE n 1 9 ARG n 1 10 ASP n 1 11 PHE n 1 12 PHE n 1 13 VAL n 1 14 ILE n 1 15 THR n 1 16 ASN n 1 17 SER n 1 18 GLU n 1 19 TYR n 1 20 THR n 1 21 PHE n 1 22 ALA n 1 23 GLY n 1 24 VAL n 1 25 HIS n 1 26 TYR n 1 27 ALA n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 VAL n 1 32 LEU n 1 33 HIS n 1 34 VAL n 1 35 SER n 1 36 PRO n 1 37 THR n 1 38 GLN n 1 39 LYS n 1 40 ARG n 1 41 ALA n 1 42 PHE n 1 43 TRP n 1 44 VAL n 1 45 ILE n 1 46 ALA n 1 47 ASP n 1 48 GLN n 1 49 GLU n 1 50 ASN n 1 51 PHE n 1 52 ILE n 1 53 LYS n 1 54 GLN n 1 55 VAL n 1 56 ASN n 1 57 LYS n 1 58 ASN n 1 59 ILE n 1 60 GLU n 1 61 TYR n 1 62 VAL n 1 63 GLU n 1 64 LYS n 1 65 ASN n 1 66 ALA n 1 67 SER n 1 68 PRO n 1 69 ALA n 1 70 PHE n 1 71 LEU n 1 72 GLN n 1 73 ARG n 1 74 ILE n 1 75 VAL n 1 76 GLU n 1 77 ILE n 1 78 TYR n 1 79 GLN n 1 80 VAL n 1 81 LYS n 1 82 PHE n 1 83 GLU n 1 84 GLY n 1 85 LYS n 1 86 ASN n 1 87 VAL n 1 88 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BAF47173 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain OM98x _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'papain cleavage' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus mutans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1309 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIPL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'p15Tv lic' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A2V8B8_STRMU _struct_ref.pdbx_db_accession A2V8B8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NKREETDMRDFFVITNSEYTFAGVHYAKGAVLHVSPTQKRAFWVIADQENFIKQVNKNIEYVEKNASPAFLQRIVEIYQV KFEGKNVH ; _struct_ref.pdbx_align_begin 152 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L9A _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 88 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A2V8B8 _struct_ref_seq.db_align_beg 152 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 239 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 152 _struct_ref_seq.pdbx_auth_seq_align_end 239 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3L9A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.98 _exptl_crystal.density_percent_sol 37.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;0.1M Hepes ph7.5, 0.2M Ammonium Sulfate, 25% PEG3350, 1/10 Papain. Cryoprotected with crystallization solution plus 8% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-10-18 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI-111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97915 1.0 2 0.97942 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97915, 0.97942' # _reflns.entry_id 3L9A _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F . _reflns.d_resolution_low 23.29 _reflns.d_resolution_high 1.25 _reflns.number_obs 20493 _reflns.number_all 22544 _reflns.percent_possible_obs 90.9 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 59.333 _reflns.B_iso_Wilson_estimate 9.0 _reflns.pdbx_redundancy 6.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.27 _reflns_shell.percent_possible_all 49.9 _reflns_shell.Rmerge_I_obs 0.11300 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 10.5 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 567 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3L9A _refine.ls_number_reflns_obs 19106 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.29 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 95.31 _refine.ls_R_factor_obs 0.13462 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.13354 _refine.ls_R_factor_R_free 0.15490 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 990 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.965 _refine.B_iso_mean 9.877 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model none _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.054 _refine.pdbx_overall_ESU_R_Free 0.046 _refine.overall_SU_ML 0.021 _refine.overall_SU_B 1.029 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 743 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 898 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 23.29 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 783 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.160 1.919 ? 1064 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.382 5.000 ? 96 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.839 24.634 ? 41 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.213 15.000 ? 133 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 34.183 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.087 0.200 ? 111 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 611 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.240 0.200 ? 364 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.322 0.200 ? 556 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.114 0.200 ? 99 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.080 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.208 0.200 ? 64 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.162 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.798 1.500 ? 453 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.299 2.000 ? 747 'X-RAY DIFFRACTION' ? r_scbond_it 1.968 3.000 ? 339 'X-RAY DIFFRACTION' ? r_scangle_it 2.635 4.500 ? 316 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.586 3.000 ? 792 'X-RAY DIFFRACTION' ? r_sphericity_free 3.753 3.000 ? 137 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2.008 3.000 ? 761 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.300 _refine_ls_shell.d_res_low 1.334 _refine_ls_shell.number_reflns_R_work 984 _refine_ls_shell.R_factor_R_work 0.150 _refine_ls_shell.percent_reflns_obs 71.34 _refine_ls_shell.R_factor_R_free 0.195 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1048 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3L9A _struct.title 'Structure of the C-terminal domain from a Streptococcus mutans hypothetical' _struct.pdbx_descriptor 'uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L9A _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text ;phage-associated, hypothetical protein, CHAP domain, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;tetramer is made of molecule 1 -- the solved molecule rotation matrix transl vector molecule 2 -- (0.000 1.000 0.000 (0.000 -1.000 0.000 0.000 64.08 0.000 0.000 1.000) 0.000) molecule 3 -- (0.000 -1.000 0.000 (64.08 1.000 0.000 0.000 0.000 0.000 0.000 1.000) 0.000) molecule 4 -- (-1.00 0.000 0.000 (64.08 0.000 -1.00 0.000 64.08 0.000 0.000 1.000) 0.000) ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 45 ? ASN A 56 ? ILE X 196 ASN X 207 1 ? 12 HELX_P HELX_P2 2 SER A 67 ? GLN A 79 ? SER X 218 GLN X 230 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 8 C A ? ? 1_555 A ARG 9 N ? ? X MSE 159 X ARG 160 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MSE 8 C B ? ? 1_555 A ARG 9 N ? ? X MSE 159 X ARG 160 1_555 ? ? ? ? ? ? ? 1.330 ? metalc1 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? X NA 240 X HOH 118 1_555 ? ? ? ? ? ? ? 2.330 ? metalc2 metalc ? ? A GLU 49 OE2 ? ? ? 1_555 C NA . NA ? ? X GLU 200 X NA 240 1_555 ? ? ? ? ? ? ? 2.666 ? metalc3 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O A ? X NA 240 X HOH 113 1_555 ? ? ? ? ? ? ? 2.670 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 61 ? ALA A 66 ? TYR X 212 ALA X 217 A 2 PHE A 11 ? THR A 15 ? PHE X 162 THR X 166 A 3 VAL A 31 ? SER A 35 ? VAL X 182 SER X 186 A 4 ARG A 40 ? TRP A 43 ? ARG X 191 TRP X 194 A 5 LYS A 81 ? GLU A 83 ? LYS X 232 GLU X 234 B 1 TYR A 19 ? PHE A 21 ? TYR X 170 PHE X 172 B 2 VAL A 24 ? TYR A 26 ? VAL X 175 TYR X 177 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 66 ? O ALA X 217 N ILE A 14 ? N ILE X 165 A 2 3 N PHE A 11 ? N PHE X 162 O VAL A 34 ? O VAL X 185 A 3 4 N SER A 35 ? N SER X 186 O ARG A 40 ? O ARG X 191 A 4 5 N ALA A 41 ? N ALA X 192 O LYS A 81 ? O LYS X 232 B 1 2 N TYR A 19 ? N TYR X 170 O TYR A 26 ? O TYR X 177 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE GOL X 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA X 240' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 HOH D . ? HOH X 20 . ? 1_555 ? 2 AC1 13 HOH D . ? HOH X 40 . ? 1_555 ? 3 AC1 13 HOH D . ? HOH X 97 . ? 1_555 ? 4 AC1 13 HOH D . ? HOH X 99 . ? 1_555 ? 5 AC1 13 HOH D . ? HOH X 113 . ? 1_555 ? 6 AC1 13 GLY A 29 ? GLY X 180 . ? 1_555 ? 7 AC1 13 ALA A 30 ? ALA X 181 . ? 1_555 ? 8 AC1 13 VAL A 31 ? VAL X 182 . ? 1_555 ? 9 AC1 13 TRP A 43 ? TRP X 194 . ? 1_555 ? 10 AC1 13 VAL A 44 ? VAL X 195 . ? 1_555 ? 11 AC1 13 ILE A 45 ? ILE X 196 . ? 1_555 ? 12 AC1 13 ALA A 46 ? ALA X 197 . ? 1_555 ? 13 AC1 13 GLU A 49 ? GLU X 200 . ? 1_555 ? 14 AC2 4 HOH D . ? HOH X 113 . ? 1_555 ? 15 AC2 4 HOH D . ? HOH X 118 . ? 1_555 ? 16 AC2 4 GLU A 49 ? GLU X 200 . ? 1_555 ? 17 AC2 4 HIS A 88 ? HIS X 239 . ? 7_545 ? # _database_PDB_matrix.entry_id 3L9A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3L9A _atom_sites.fract_transf_matrix[1][1] 0.015605 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015605 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025016 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 152 ? ? ? X . n A 1 2 LYS 2 153 ? ? ? X . n A 1 3 ARG 3 154 ? ? ? X . n A 1 4 GLU 4 155 ? ? ? X . n A 1 5 GLU 5 156 ? ? ? X . n A 1 6 THR 6 157 ? ? ? X . n A 1 7 ASP 7 158 ? ? ? X . n A 1 8 MSE 8 159 159 MSE MSE X . n A 1 9 ARG 9 160 160 ARG ARG X . n A 1 10 ASP 10 161 161 ASP ASP X . n A 1 11 PHE 11 162 162 PHE PHE X . n A 1 12 PHE 12 163 163 PHE PHE X . n A 1 13 VAL 13 164 164 VAL VAL X . n A 1 14 ILE 14 165 165 ILE ILE X . n A 1 15 THR 15 166 166 THR THR X . n A 1 16 ASN 16 167 167 ASN ASN X . n A 1 17 SER 17 168 168 SER SER X . n A 1 18 GLU 18 169 169 GLU GLU X . n A 1 19 TYR 19 170 170 TYR TYR X . n A 1 20 THR 20 171 171 THR THR X . n A 1 21 PHE 21 172 172 PHE PHE X . n A 1 22 ALA 22 173 173 ALA ALA X . n A 1 23 GLY 23 174 174 GLY GLY X . n A 1 24 VAL 24 175 175 VAL VAL X . n A 1 25 HIS 25 176 176 HIS HIS X . n A 1 26 TYR 26 177 177 TYR TYR X . n A 1 27 ALA 27 178 178 ALA ALA X . n A 1 28 LYS 28 179 179 LYS LYS X . n A 1 29 GLY 29 180 180 GLY GLY X . n A 1 30 ALA 30 181 181 ALA ALA X . n A 1 31 VAL 31 182 182 VAL VAL X . n A 1 32 LEU 32 183 183 LEU LEU X . n A 1 33 HIS 33 184 184 HIS HIS X . n A 1 34 VAL 34 185 185 VAL VAL X . n A 1 35 SER 35 186 186 SER SER X . n A 1 36 PRO 36 187 187 PRO PRO X . n A 1 37 THR 37 188 188 THR THR X . n A 1 38 GLN 38 189 189 GLN GLN X . n A 1 39 LYS 39 190 190 LYS LYS X . n A 1 40 ARG 40 191 191 ARG ARG X . n A 1 41 ALA 41 192 192 ALA ALA X . n A 1 42 PHE 42 193 193 PHE PHE X . n A 1 43 TRP 43 194 194 TRP TRP X . n A 1 44 VAL 44 195 195 VAL VAL X . n A 1 45 ILE 45 196 196 ILE ILE X . n A 1 46 ALA 46 197 197 ALA ALA X . n A 1 47 ASP 47 198 198 ASP ASP X . n A 1 48 GLN 48 199 199 GLN GLN X . n A 1 49 GLU 49 200 200 GLU GLU X . n A 1 50 ASN 50 201 201 ASN ASN X . n A 1 51 PHE 51 202 202 PHE PHE X . n A 1 52 ILE 52 203 203 ILE ILE X . n A 1 53 LYS 53 204 204 LYS LYS X . n A 1 54 GLN 54 205 205 GLN GLN X . n A 1 55 VAL 55 206 206 VAL VAL X . n A 1 56 ASN 56 207 207 ASN ASN X . n A 1 57 LYS 57 208 208 LYS LYS X . n A 1 58 ASN 58 209 209 ASN ASN X . n A 1 59 ILE 59 210 210 ILE ILE X . n A 1 60 GLU 60 211 211 GLU GLU X . n A 1 61 TYR 61 212 212 TYR TYR X . n A 1 62 VAL 62 213 213 VAL VAL X . n A 1 63 GLU 63 214 214 GLU GLU X . n A 1 64 LYS 64 215 215 LYS LYS X . n A 1 65 ASN 65 216 216 ASN ASN X . n A 1 66 ALA 66 217 217 ALA ALA X . n A 1 67 SER 67 218 218 SER SER X . n A 1 68 PRO 68 219 219 PRO PRO X . n A 1 69 ALA 69 220 220 ALA ALA X . n A 1 70 PHE 70 221 221 PHE PHE X . n A 1 71 LEU 71 222 222 LEU LEU X . n A 1 72 GLN 72 223 223 GLN GLN X . n A 1 73 ARG 73 224 224 ARG ARG X . n A 1 74 ILE 74 225 225 ILE ILE X . n A 1 75 VAL 75 226 226 VAL VAL X . n A 1 76 GLU 76 227 227 GLU GLU X . n A 1 77 ILE 77 228 228 ILE ILE X . n A 1 78 TYR 78 229 229 TYR TYR X . n A 1 79 GLN 79 230 230 GLN GLN X . n A 1 80 VAL 80 231 231 VAL VAL X . n A 1 81 LYS 81 232 232 LYS LYS X . n A 1 82 PHE 82 233 233 PHE PHE X . n A 1 83 GLU 83 234 234 GLU GLU X . n A 1 84 GLY 84 235 235 GLY GLY X . n A 1 85 LYS 85 236 236 LYS LYS X . n A 1 86 ASN 86 237 237 ASN ASN X . n A 1 87 VAL 87 238 238 VAL VAL X . n A 1 88 HIS 88 239 239 HIS HIS X . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1 1 GOL GOL X . C 3 NA 1 240 1 NA NA X . D 4 HOH 1 2 2 HOH HOH X . D 4 HOH 2 3 3 HOH HOH X . D 4 HOH 3 4 4 HOH HOH X . D 4 HOH 4 5 5 HOH HOH X . D 4 HOH 5 6 6 HOH HOH X . D 4 HOH 6 7 7 HOH HOH X . D 4 HOH 7 8 8 HOH HOH X . D 4 HOH 8 9 9 HOH HOH X . D 4 HOH 9 10 10 HOH HOH X . D 4 HOH 10 11 11 HOH HOH X . D 4 HOH 11 12 12 HOH HOH X . D 4 HOH 12 13 13 HOH HOH X . D 4 HOH 13 14 14 HOH HOH X . D 4 HOH 14 15 15 HOH HOH X . D 4 HOH 15 16 16 HOH HOH X . D 4 HOH 16 17 17 HOH HOH X . D 4 HOH 17 18 18 HOH HOH X . D 4 HOH 18 19 19 HOH HOH X . D 4 HOH 19 20 20 HOH HOH X . D 4 HOH 20 21 21 HOH HOH X . D 4 HOH 21 22 22 HOH HOH X . D 4 HOH 22 23 23 HOH HOH X . D 4 HOH 23 24 24 HOH HOH X . D 4 HOH 24 25 25 HOH HOH X . D 4 HOH 25 26 26 HOH HOH X . D 4 HOH 26 27 27 HOH HOH X . D 4 HOH 27 28 28 HOH HOH X . D 4 HOH 28 29 29 HOH HOH X . D 4 HOH 29 30 30 HOH HOH X . D 4 HOH 30 31 31 HOH HOH X . D 4 HOH 31 32 32 HOH HOH X . D 4 HOH 32 33 33 HOH HOH X . D 4 HOH 33 34 34 HOH HOH X . D 4 HOH 34 35 35 HOH HOH X . D 4 HOH 35 36 36 HOH HOH X . D 4 HOH 36 37 37 HOH HOH X . D 4 HOH 37 38 38 HOH HOH X . D 4 HOH 38 39 39 HOH HOH X . D 4 HOH 39 40 40 HOH HOH X . D 4 HOH 40 41 41 HOH HOH X . D 4 HOH 41 42 42 HOH HOH X . D 4 HOH 42 43 43 HOH HOH X . D 4 HOH 43 44 44 HOH HOH X . D 4 HOH 44 45 45 HOH HOH X . D 4 HOH 45 46 46 HOH HOH X . D 4 HOH 46 47 47 HOH HOH X . D 4 HOH 47 48 48 HOH HOH X . D 4 HOH 48 49 49 HOH HOH X . D 4 HOH 49 50 50 HOH HOH X . D 4 HOH 50 51 51 HOH HOH X . D 4 HOH 51 52 52 HOH HOH X . D 4 HOH 52 53 53 HOH HOH X . D 4 HOH 53 54 54 HOH HOH X . D 4 HOH 54 55 55 HOH HOH X . D 4 HOH 55 56 56 HOH HOH X . D 4 HOH 56 57 57 HOH HOH X . D 4 HOH 57 58 58 HOH HOH X . D 4 HOH 58 59 59 HOH HOH X . D 4 HOH 59 60 60 HOH HOH X . D 4 HOH 60 61 61 HOH HOH X . D 4 HOH 61 62 62 HOH HOH X . D 4 HOH 62 63 63 HOH HOH X . D 4 HOH 63 64 64 HOH HOH X . D 4 HOH 64 65 65 HOH HOH X . D 4 HOH 65 66 66 HOH HOH X . D 4 HOH 66 67 67 HOH HOH X . D 4 HOH 67 68 68 HOH HOH X . D 4 HOH 68 69 69 HOH HOH X . D 4 HOH 69 70 70 HOH HOH X . D 4 HOH 70 71 71 HOH HOH X . D 4 HOH 71 72 72 HOH HOH X . D 4 HOH 72 73 73 HOH HOH X . D 4 HOH 73 74 74 HOH HOH X . D 4 HOH 74 75 75 HOH HOH X . D 4 HOH 75 76 76 HOH HOH X . D 4 HOH 76 77 77 HOH HOH X . D 4 HOH 77 78 78 HOH HOH X . D 4 HOH 78 79 79 HOH HOH X . D 4 HOH 79 80 80 HOH HOH X . D 4 HOH 80 81 81 HOH HOH X . D 4 HOH 81 82 82 HOH HOH X . D 4 HOH 82 83 83 HOH HOH X . D 4 HOH 83 84 84 HOH HOH X . D 4 HOH 84 85 85 HOH HOH X . D 4 HOH 85 86 86 HOH HOH X . D 4 HOH 86 87 87 HOH HOH X . D 4 HOH 87 88 88 HOH HOH X . D 4 HOH 88 89 89 HOH HOH X . D 4 HOH 89 90 90 HOH HOH X . D 4 HOH 90 91 91 HOH HOH X . D 4 HOH 91 92 92 HOH HOH X . D 4 HOH 92 93 93 HOH HOH X . D 4 HOH 93 94 94 HOH HOH X . D 4 HOH 94 95 95 HOH HOH X . D 4 HOH 95 96 96 HOH HOH X . D 4 HOH 96 97 97 HOH HOH X . D 4 HOH 97 98 98 HOH HOH X . D 4 HOH 98 99 99 HOH HOH X . D 4 HOH 99 100 100 HOH HOH X . D 4 HOH 100 101 101 HOH HOH X . D 4 HOH 101 102 102 HOH HOH X . D 4 HOH 102 103 103 HOH HOH X . D 4 HOH 103 104 104 HOH HOH X . D 4 HOH 104 105 105 HOH HOH X . D 4 HOH 105 106 106 HOH HOH X . D 4 HOH 106 107 107 HOH HOH X . D 4 HOH 107 108 108 HOH HOH X . D 4 HOH 108 109 109 HOH HOH X . D 4 HOH 109 110 110 HOH HOH X . D 4 HOH 110 111 111 HOH HOH X . D 4 HOH 111 112 112 HOH HOH X . D 4 HOH 112 113 113 HOH HOH X . D 4 HOH 113 114 114 HOH HOH X . D 4 HOH 114 115 115 HOH HOH X . D 4 HOH 115 116 116 HOH HOH X . D 4 HOH 116 117 117 HOH HOH X . D 4 HOH 117 118 118 HOH HOH X . D 4 HOH 118 119 119 HOH HOH X . D 4 HOH 119 120 120 HOH HOH X . D 4 HOH 120 121 121 HOH HOH X . D 4 HOH 121 122 122 HOH HOH X . D 4 HOH 122 123 123 HOH HOH X . D 4 HOH 123 124 124 HOH HOH X . D 4 HOH 124 126 126 HOH HOH X . D 4 HOH 125 127 127 HOH HOH X . D 4 HOH 126 128 128 HOH HOH X . D 4 HOH 127 241 1 HOH HOH X . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 8 _pdbx_struct_mod_residue.auth_asym_id X _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 159 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7650 ? 1 MORE -43 ? 1 'SSA (A^2)' 13760 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 64.0800000000 0.0000000000 -1.0000000000 0.0000000000 64.0800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 64.0800000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 64.0800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? X HOH 118 ? 1_555 NA ? C NA . ? X NA 240 ? 1_555 OE2 ? A GLU 49 ? X GLU 200 ? 1_555 139.7 ? 2 O ? D HOH . ? X HOH 118 ? 1_555 NA ? C NA . ? X NA 240 ? 1_555 O A D HOH . ? X HOH 113 ? 1_555 72.2 ? 3 OE2 ? A GLU 49 ? X GLU 200 ? 1_555 NA ? C NA . ? X NA 240 ? 1_555 O A D HOH . ? X HOH 113 ? 1_555 85.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 'data collection' . ? 1 SHELXCD phasing . ? 2 SHELXE 'model building' . ? 3 REFMAC refinement 5.2.0019 ? 4 HKL-2000 'data reduction' . ? 5 HKL-2000 'data scaling' . ? 6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X ASN 152 ? A ASN 1 2 1 Y 1 X LYS 153 ? A LYS 2 3 1 Y 1 X ARG 154 ? A ARG 3 4 1 Y 1 X GLU 155 ? A GLU 4 5 1 Y 1 X GLU 156 ? A GLU 5 6 1 Y 1 X THR 157 ? A THR 6 7 1 Y 1 X ASP 158 ? A ASP 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SODIUM ION' NA 4 water HOH #