data_3L9J # _entry.id 3L9J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L9J pdb_00003l9j 10.2210/pdb3l9j/pdb RCSB RCSB057003 ? ? WWPDB D_1000057003 ? ? # _pdbx_database_status.entry_id 3L9J _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-01-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Byla, P.' 1 ? 'Andersen, M.H.' 2 ? 'Thogersen, H.C.' 3 ? 'Gad, H.H.' 4 ? 'Hartmann, R.' 5 ? # _citation.id primary _citation.title ;Selection of a novel and highly specific TNF{alpha} antagonist: insight from the crystal structure of the antagonist-TNF{alpha} complex ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 12096 _citation.page_last 12100 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20179326 _citation.pdbx_database_id_DOI 10.1074/jbc.M109.063305 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Byla, P.' 1 ? primary 'Andersen, M.H.' 2 ? primary 'Holtet, T.L.' 3 ? primary 'Jacobsen, H.' 4 ? primary 'Munch, M.' 5 ? primary 'Gad, H.H.' 6 ? primary 'Thogersen, H.C.' 7 ? primary 'Hartmann, R.' 8 ? # _cell.length_a 83.905 _cell.length_b 83.905 _cell.length_c 149.172 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3L9J _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.entry_id 3L9J _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 182 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man TNFalpha 15314.166 1 ? ? ? ? 2 polymer man 'Tumor necrosis factor, soluble form' 16497.684 1 ? ? 'UNP residues 85-233' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 246 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'TNF-alpha, Tumor necrosis factor ligand superfamily member 2, TNF-a, Cachectin' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LQTVCLKGTKHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNKRWSRYFWVDM TGTRIAYKNWEHSSDAQPDPSNWENCAVLSGAANGKWFGKRCRDQLPYICQFGI ; ;LQTVCLKGTKHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNKRWSRYFWVDM TGTRIAYKNWEHSSDAQPDPSNWENCAVLSGAANGKWFGKRCRDQLPYICQFGI ; C ? 2 'polypeptide(L)' no no ;SDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQ TKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL ; ;SDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQ TKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL ; T ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 GLN n 1 3 THR n 1 4 VAL n 1 5 CYS n 1 6 LEU n 1 7 LYS n 1 8 GLY n 1 9 THR n 1 10 LYS n 1 11 HIS n 1 12 MET n 1 13 LYS n 1 14 CYS n 1 15 PHE n 1 16 LEU n 1 17 ALA n 1 18 PHE n 1 19 THR n 1 20 GLN n 1 21 THR n 1 22 LYS n 1 23 THR n 1 24 PHE n 1 25 HIS n 1 26 GLU n 1 27 ALA n 1 28 SER n 1 29 GLU n 1 30 ASP n 1 31 CYS n 1 32 ILE n 1 33 SER n 1 34 ARG n 1 35 GLY n 1 36 GLY n 1 37 THR n 1 38 LEU n 1 39 SER n 1 40 THR n 1 41 PRO n 1 42 GLN n 1 43 THR n 1 44 GLY n 1 45 SER n 1 46 GLU n 1 47 ASN n 1 48 ASP n 1 49 ALA n 1 50 LEU n 1 51 TYR n 1 52 GLU n 1 53 TYR n 1 54 LEU n 1 55 ARG n 1 56 GLN n 1 57 SER n 1 58 VAL n 1 59 GLY n 1 60 ASN n 1 61 GLU n 1 62 ALA n 1 63 GLU n 1 64 ILE n 1 65 TRP n 1 66 LEU n 1 67 GLY n 1 68 LEU n 1 69 ASN n 1 70 LYS n 1 71 ARG n 1 72 TRP n 1 73 SER n 1 74 ARG n 1 75 TYR n 1 76 PHE n 1 77 TRP n 1 78 VAL n 1 79 ASP n 1 80 MET n 1 81 THR n 1 82 GLY n 1 83 THR n 1 84 ARG n 1 85 ILE n 1 86 ALA n 1 87 TYR n 1 88 LYS n 1 89 ASN n 1 90 TRP n 1 91 GLU n 1 92 HIS n 1 93 SER n 1 94 SER n 1 95 ASP n 1 96 ALA n 1 97 GLN n 1 98 PRO n 1 99 ASP n 1 100 PRO n 1 101 SER n 1 102 ASN n 1 103 TRP n 1 104 GLU n 1 105 ASN n 1 106 CYS n 1 107 ALA n 1 108 VAL n 1 109 LEU n 1 110 SER n 1 111 GLY n 1 112 ALA n 1 113 ALA n 1 114 ASN n 1 115 GLY n 1 116 LYS n 1 117 TRP n 1 118 PHE n 1 119 GLY n 1 120 LYS n 1 121 ARG n 1 122 CYS n 1 123 ARG n 1 124 ASP n 1 125 GLN n 1 126 LEU n 1 127 PRO n 1 128 TYR n 1 129 ILE n 1 130 CYS n 1 131 GLN n 1 132 PHE n 1 133 GLY n 1 134 ILE n 2 1 SER n 2 2 ASP n 2 3 LYS n 2 4 PRO n 2 5 VAL n 2 6 ALA n 2 7 HIS n 2 8 VAL n 2 9 VAL n 2 10 ALA n 2 11 ASN n 2 12 PRO n 2 13 GLN n 2 14 ALA n 2 15 GLU n 2 16 GLY n 2 17 GLN n 2 18 LEU n 2 19 GLN n 2 20 TRP n 2 21 LEU n 2 22 ASN n 2 23 ARG n 2 24 ARG n 2 25 ALA n 2 26 ASN n 2 27 ALA n 2 28 LEU n 2 29 LEU n 2 30 ALA n 2 31 ASN n 2 32 GLY n 2 33 VAL n 2 34 GLU n 2 35 LEU n 2 36 ARG n 2 37 ASP n 2 38 ASN n 2 39 GLN n 2 40 LEU n 2 41 VAL n 2 42 VAL n 2 43 PRO n 2 44 SER n 2 45 GLU n 2 46 GLY n 2 47 LEU n 2 48 TYR n 2 49 LEU n 2 50 ILE n 2 51 TYR n 2 52 SER n 2 53 GLN n 2 54 VAL n 2 55 LEU n 2 56 PHE n 2 57 LYS n 2 58 GLY n 2 59 GLN n 2 60 GLY n 2 61 CYS n 2 62 PRO n 2 63 SER n 2 64 THR n 2 65 HIS n 2 66 VAL n 2 67 LEU n 2 68 LEU n 2 69 THR n 2 70 HIS n 2 71 THR n 2 72 ILE n 2 73 SER n 2 74 ARG n 2 75 ILE n 2 76 ALA n 2 77 VAL n 2 78 SER n 2 79 TYR n 2 80 GLN n 2 81 THR n 2 82 LYS n 2 83 VAL n 2 84 ASN n 2 85 LEU n 2 86 LEU n 2 87 SER n 2 88 ALA n 2 89 ILE n 2 90 LYS n 2 91 SER n 2 92 PRO n 2 93 CYS n 2 94 GLN n 2 95 ARG n 2 96 GLU n 2 97 THR n 2 98 PRO n 2 99 GLU n 2 100 GLY n 2 101 ALA n 2 102 GLU n 2 103 ALA n 2 104 LYS n 2 105 PRO n 2 106 TRP n 2 107 TYR n 2 108 GLU n 2 109 PRO n 2 110 ILE n 2 111 TYR n 2 112 LEU n 2 113 GLY n 2 114 GLY n 2 115 VAL n 2 116 PHE n 2 117 GLN n 2 118 LEU n 2 119 GLU n 2 120 LYS n 2 121 GLY n 2 122 ASP n 2 123 ARG n 2 124 LEU n 2 125 SER n 2 126 ALA n 2 127 GLU n 2 128 ILE n 2 129 ASN n 2 130 ARG n 2 131 PRO n 2 132 ASP n 2 133 TYR n 2 134 LEU n 2 135 ASP n 2 136 PHE n 2 137 ALA n 2 138 GLU n 2 139 SER n 2 140 GLY n 2 141 GLN n 2 142 VAL n 2 143 TYR n 2 144 PHE n 2 145 GLY n 2 146 ILE n 2 147 ILE n 2 148 ALA n 2 149 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pT7CIIH6 ? ? 2 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pT7CIIH6 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 3L9J 3L9J 1 ;LQTVCLKGTKHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNKRWSRYFWVDM TGTRIAYKNWEHSSDAQPDPSNWENCAVLSGAANGKWFGKRCRDQLPYICQFGI ; 46 ? 2 UNP TNFA_HUMAN P01375 2 ;SDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQ TKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL ; 85 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3L9J C 1 ? 134 ? 3L9J 46 ? 180 ? 46 180 2 2 3L9J T 1 ? 149 ? P01375 85 ? 233 ? 9 157 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3L9J _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 48.37 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Tris, 0.35M MgAc, 20% 2-propanol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH ? ? 2 CCD MARRESEARCH ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' ? M x-ray 2 1 'SINGLE WAVELENGTH' ? M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.81500 1.0 2 1.0 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'EMBL/DESY, HAMBURG BEAMLINE X12' ? 0.81500 'EMBL/DESY, HAMBURG' X12 2 SYNCHROTRON 'MAX II BEAMLINE I911-3' ? 1.0 'MAX II' I911-3 # _reflns.entry_id 3L9J _reflns.observed_criterion_sigma_F 3 _reflns.observed_criterion_sigma_I 3 _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 74 _reflns.number_all 17880 _reflns.number_obs 17855 _reflns.percent_possible_obs 99.86 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _refine.entry_id 3L9J _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 41.95 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.860 _refine.ls_number_reflns_obs 17855 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.175 _refine.ls_R_factor_R_work 0.173 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.217 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 968 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.367 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.290 _refine.aniso_B[2][2] 0.290 _refine.aniso_B[3][3] -0.440 _refine.aniso_B[1][2] 0.150 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.205 _refine.pdbx_overall_ESU_R_Free 0.172 _refine.overall_SU_ML 0.104 _refine.overall_SU_B 3.821 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ;PDB ENTRY 1TNF for chain T and 1TN3 for chain C; For 1TN3 the randomized loops was removed from teh search model. These loop is 116-122 (loop 1) and 145-150 (loop 4) ; _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 73.34 _refine.B_iso_min 12.25 _refine.occupancy_max 1.00 _refine.occupancy_min 0.33 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2206 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 246 _refine_hist.number_atoms_total 2453 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 41.95 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2267 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3082 1.475 1.940 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 276 6.420 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 110 38.431 24.182 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 365 13.126 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14 18.222 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 328 0.110 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1756 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 928 0.207 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1543 0.306 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 203 0.191 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 2 0.045 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 62 0.234 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 38 0.319 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1417 1.129 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2224 1.977 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 987 2.915 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 858 4.718 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.850 _refine_ls_shell.number_reflns_R_work 1261 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.173 _refine_ls_shell.R_factor_R_free 0.276 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1343 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3L9J _struct.title 'Selection of a novel highly specific TNFalpha antagonist: Insight from the crystal structure of the antagonist-TNFalpha complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L9J _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;TNF-alpha, antagonist, in vitro selection, Cell membrane, Cytokine, Disulfide bond, Glycoprotein, Lipoprotein, Secreted, Signal-anchor, Transmembrane, IMMUNE SYSTEM ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 23 ? ARG A 34 ? THR C 69 ARG C 80 1 ? 12 HELX_P HELX_P2 2 THR A 43 ? VAL A 58 ? THR C 89 VAL C 104 1 ? 16 HELX_P HELX_P3 3 HIS A 92 ? GLN A 97 ? HIS C 138 GLN C 143 1 ? 6 HELX_P HELX_P4 4 ARG B 130 ? LEU B 134 ? ARG T 138 LEU T 142 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 14 SG ? ? C CYS 50 C CYS 60 1_555 ? ? ? ? ? ? ? 2.078 ? ? disulf2 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 130 SG ? ? C CYS 77 C CYS 176 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? A CYS 106 SG ? ? ? 1_555 A CYS 122 SG ? ? C CYS 152 C CYS 168 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf4 disulf ? ? B CYS 61 SG ? ? ? 1_555 B CYS 93 SG ? ? T CYS 69 T CYS 101 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? C HOH 202 C MG 497 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? C HOH 210 C MG 497 1_555 ? ? ? ? ? ? ? 1.950 ? ? metalc3 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? C HOH 221 C MG 497 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc4 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? C HOH 245 C MG 497 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc5 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? C HOH 246 C MG 497 1_555 ? ? ? ? ? ? ? 1.940 ? ? metalc6 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? C HOH 251 C MG 497 1_555 ? ? ? ? ? ? ? 2.067 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 2 ? D ? 3 ? E ? 5 ? F ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 4 ? LEU A 6 ? VAL C 49 LEU C 51 A 2 MET A 12 ? LYS A 22 ? MET C 58 LYS C 68 A 3 LEU A 126 ? ILE A 134 ? LEU C 172 ILE C 180 A 4 THR A 37 ? LEU A 38 ? THR C 83 LEU C 84 B 1 GLU A 63 ? TRP A 65 ? GLU C 109 TRP C 111 B 2 CYS A 106 ? SER A 110 ? CYS C 152 SER C 156 B 3 TRP A 117 ? LYS A 120 ? TRP C 163 LYS C 166 C 1 LEU A 68 ? ASN A 69 ? LEU C 114 ASN C 115 C 2 VAL A 78 ? ASP A 79 ? VAL C 124 ASP C 125 D 1 TRP B 20 ? LEU B 21 ? TRP T 28 LEU T 29 D 2 VAL B 5 ? ALA B 10 ? VAL T 13 ALA T 18 D 3 LEU B 28 ? ALA B 30 ? LEU T 36 ALA T 38 E 1 TRP B 20 ? LEU B 21 ? TRP T 28 LEU T 29 E 2 VAL B 5 ? ALA B 10 ? VAL T 13 ALA T 18 E 3 TYR B 143 ? ALA B 148 ? TYR T 151 ALA T 156 E 4 GLY B 46 ? GLN B 59 ? GLY T 54 GLN T 67 E 5 PRO B 105 ? LEU B 118 ? PRO T 113 LEU T 126 F 1 GLU B 34 ? ARG B 36 ? GLU T 42 ARG T 44 F 2 GLN B 39 ? VAL B 41 ? GLN T 47 VAL T 49 F 3 ARG B 123 ? ILE B 128 ? ARG T 131 ILE T 136 F 4 LEU B 68 ? ILE B 75 ? LEU T 76 ILE T 83 F 5 LYS B 82 ? LYS B 90 ? LYS T 90 LYS T 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 4 ? N VAL C 49 O PHE A 15 ? O PHE C 61 A 2 3 N LEU A 16 ? N LEU C 62 O CYS A 130 ? O CYS C 176 A 3 4 O GLN A 131 ? O GLN C 177 N THR A 37 ? N THR C 83 B 1 2 N ILE A 64 ? N ILE C 110 O LEU A 109 ? O LEU C 155 B 2 3 N VAL A 108 ? N VAL C 154 O PHE A 118 ? O PHE C 164 C 1 2 N ASN A 69 ? N ASN C 115 O VAL A 78 ? O VAL C 124 D 1 2 O LEU B 21 ? O LEU T 29 N VAL B 9 ? N VAL T 17 D 2 3 N VAL B 5 ? N VAL T 13 O ALA B 30 ? O ALA T 38 E 1 2 O LEU B 21 ? O LEU T 29 N VAL B 9 ? N VAL T 17 E 2 3 N VAL B 8 ? N VAL T 16 O PHE B 144 ? O PHE T 152 E 3 4 O GLY B 145 ? O GLY T 153 N TYR B 51 ? N TYR T 59 E 4 5 N ILE B 50 ? N ILE T 58 O GLY B 114 ? O GLY T 122 F 1 2 N GLU B 34 ? N GLU T 42 O VAL B 41 ? O VAL T 49 F 2 3 N LEU B 40 ? N LEU T 48 O LEU B 124 ? O LEU T 132 F 3 4 O ARG B 123 ? O ARG T 131 N ILE B 75 ? N ILE T 83 F 4 5 N LEU B 68 ? N LEU T 76 O LYS B 90 ? O LYS T 98 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 497 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG C 497' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH C 202 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH C 210 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH C 221 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH C 245 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH C 246 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH C 251 . ? 1_555 ? # _atom_sites.entry_id 3L9J _atom_sites.fract_transf_matrix[1][1] 0.011918 _atom_sites.fract_transf_matrix[1][2] 0.006881 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013762 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006704 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 46 46 LEU LEU C . n A 1 2 GLN 2 47 47 GLN GLN C . n A 1 3 THR 3 48 48 THR THR C . n A 1 4 VAL 4 49 49 VAL VAL C . n A 1 5 CYS 5 50 50 CYS CYS C . n A 1 6 LEU 6 51 51 LEU LEU C . n A 1 7 LYS 7 53 ? ? ? C . n A 1 8 GLY 8 54 ? ? ? C . n A 1 9 THR 9 55 ? ? ? C . n A 1 10 LYS 10 56 ? ? ? C . n A 1 11 HIS 11 57 57 HIS HIS C . n A 1 12 MET 12 58 58 MET MET C . n A 1 13 LYS 13 59 59 LYS LYS C . n A 1 14 CYS 14 60 60 CYS CYS C . n A 1 15 PHE 15 61 61 PHE PHE C . n A 1 16 LEU 16 62 62 LEU LEU C . n A 1 17 ALA 17 63 63 ALA ALA C . n A 1 18 PHE 18 64 64 PHE PHE C . n A 1 19 THR 19 65 65 THR THR C . n A 1 20 GLN 20 66 66 GLN GLN C . n A 1 21 THR 21 67 67 THR THR C . n A 1 22 LYS 22 68 68 LYS LYS C . n A 1 23 THR 23 69 69 THR THR C . n A 1 24 PHE 24 70 70 PHE PHE C . n A 1 25 HIS 25 71 71 HIS HIS C . n A 1 26 GLU 26 72 72 GLU GLU C . n A 1 27 ALA 27 73 73 ALA ALA C . n A 1 28 SER 28 74 74 SER SER C . n A 1 29 GLU 29 75 75 GLU GLU C . n A 1 30 ASP 30 76 76 ASP ASP C . n A 1 31 CYS 31 77 77 CYS CYS C . n A 1 32 ILE 32 78 78 ILE ILE C . n A 1 33 SER 33 79 79 SER SER C . n A 1 34 ARG 34 80 80 ARG ARG C . n A 1 35 GLY 35 81 81 GLY GLY C . n A 1 36 GLY 36 82 82 GLY GLY C . n A 1 37 THR 37 83 83 THR THR C . n A 1 38 LEU 38 84 84 LEU LEU C . n A 1 39 SER 39 85 85 SER SER C . n A 1 40 THR 40 86 86 THR THR C . n A 1 41 PRO 41 87 87 PRO PRO C . n A 1 42 GLN 42 88 88 GLN GLN C . n A 1 43 THR 43 89 89 THR THR C . n A 1 44 GLY 44 90 90 GLY GLY C . n A 1 45 SER 45 91 91 SER SER C . n A 1 46 GLU 46 92 92 GLU GLU C . n A 1 47 ASN 47 93 93 ASN ASN C . n A 1 48 ASP 48 94 94 ASP ASP C . n A 1 49 ALA 49 95 95 ALA ALA C . n A 1 50 LEU 50 96 96 LEU LEU C . n A 1 51 TYR 51 97 97 TYR TYR C . n A 1 52 GLU 52 98 98 GLU GLU C . n A 1 53 TYR 53 99 99 TYR TYR C . n A 1 54 LEU 54 100 100 LEU LEU C . n A 1 55 ARG 55 101 101 ARG ARG C . n A 1 56 GLN 56 102 102 GLN GLN C . n A 1 57 SER 57 103 103 SER SER C . n A 1 58 VAL 58 104 104 VAL VAL C . n A 1 59 GLY 59 105 105 GLY GLY C . n A 1 60 ASN 60 106 106 ASN ASN C . n A 1 61 GLU 61 107 107 GLU GLU C . n A 1 62 ALA 62 108 108 ALA ALA C . n A 1 63 GLU 63 109 109 GLU GLU C . n A 1 64 ILE 64 110 110 ILE ILE C . n A 1 65 TRP 65 111 111 TRP TRP C . n A 1 66 LEU 66 112 112 LEU LEU C . n A 1 67 GLY 67 113 113 GLY GLY C . n A 1 68 LEU 68 114 114 LEU LEU C . n A 1 69 ASN 69 115 115 ASN ASN C . n A 1 70 LYS 70 116 116 LYS LYS C . n A 1 71 ARG 71 117 117 ARG ARG C . n A 1 72 TRP 72 118 118 TRP TRP C . n A 1 73 SER 73 119 119 SER SER C . n A 1 74 ARG 74 120 120 ARG ARG C . n A 1 75 TYR 75 121 121 TYR TYR C . n A 1 76 PHE 76 122 122 PHE PHE C . n A 1 77 TRP 77 123 123 TRP TRP C . n A 1 78 VAL 78 124 124 VAL VAL C . n A 1 79 ASP 79 125 125 ASP ASP C . n A 1 80 MET 80 126 126 MET MET C . n A 1 81 THR 81 127 127 THR THR C . n A 1 82 GLY 82 128 128 GLY GLY C . n A 1 83 THR 83 129 129 THR THR C . n A 1 84 ARG 84 130 130 ARG ARG C . n A 1 85 ILE 85 131 131 ILE ILE C . n A 1 86 ALA 86 132 132 ALA ALA C . n A 1 87 TYR 87 133 133 TYR TYR C . n A 1 88 LYS 88 134 134 LYS LYS C . n A 1 89 ASN 89 135 135 ASN ASN C . n A 1 90 TRP 90 136 136 TRP TRP C . n A 1 91 GLU 91 137 137 GLU GLU C . n A 1 92 HIS 92 138 138 HIS HIS C . n A 1 93 SER 93 139 139 SER SER C . n A 1 94 SER 94 140 140 SER SER C . n A 1 95 ASP 95 141 141 ASP ASP C . n A 1 96 ALA 96 142 142 ALA ALA C . n A 1 97 GLN 97 143 143 GLN GLN C . n A 1 98 PRO 98 144 144 PRO PRO C . n A 1 99 ASP 99 145 145 ASP ASP C . n A 1 100 PRO 100 146 146 PRO PRO C . n A 1 101 SER 101 147 147 SER SER C . n A 1 102 ASN 102 148 148 ASN ASN C . n A 1 103 TRP 103 149 149 TRP TRP C . n A 1 104 GLU 104 150 150 GLU GLU C . n A 1 105 ASN 105 151 151 ASN ASN C . n A 1 106 CYS 106 152 152 CYS CYS C . n A 1 107 ALA 107 153 153 ALA ALA C . n A 1 108 VAL 108 154 154 VAL VAL C . n A 1 109 LEU 109 155 155 LEU LEU C . n A 1 110 SER 110 156 156 SER SER C . n A 1 111 GLY 111 157 157 GLY GLY C . n A 1 112 ALA 112 158 158 ALA ALA C . n A 1 113 ALA 113 159 159 ALA ALA C . n A 1 114 ASN 114 160 160 ASN ASN C . n A 1 115 GLY 115 161 161 GLY GLY C . n A 1 116 LYS 116 162 162 LYS LYS C . n A 1 117 TRP 117 163 163 TRP TRP C . n A 1 118 PHE 118 164 164 PHE PHE C . n A 1 119 GLY 119 165 165 GLY GLY C . n A 1 120 LYS 120 166 166 LYS LYS C . n A 1 121 ARG 121 167 167 ARG ARG C . n A 1 122 CYS 122 168 168 CYS CYS C . n A 1 123 ARG 123 169 169 ARG ARG C . n A 1 124 ASP 124 170 170 ASP ASP C . n A 1 125 GLN 125 171 171 GLN GLN C . n A 1 126 LEU 126 172 172 LEU LEU C . n A 1 127 PRO 127 173 173 PRO PRO C . n A 1 128 TYR 128 174 174 TYR TYR C . n A 1 129 ILE 129 175 175 ILE ILE C . n A 1 130 CYS 130 176 176 CYS CYS C . n A 1 131 GLN 131 177 177 GLN GLN C . n A 1 132 PHE 132 178 178 PHE PHE C . n A 1 133 GLY 133 179 179 GLY GLY C . n A 1 134 ILE 134 180 180 ILE ILE C . n B 2 1 SER 1 9 9 SER SER T . n B 2 2 ASP 2 10 10 ASP ASP T . n B 2 3 LYS 3 11 11 LYS LYS T . n B 2 4 PRO 4 12 12 PRO PRO T . n B 2 5 VAL 5 13 13 VAL VAL T . n B 2 6 ALA 6 14 14 ALA ALA T . n B 2 7 HIS 7 15 15 HIS HIS T . n B 2 8 VAL 8 16 16 VAL VAL T . n B 2 9 VAL 9 17 17 VAL VAL T . n B 2 10 ALA 10 18 18 ALA ALA T . n B 2 11 ASN 11 19 19 ASN ASN T . n B 2 12 PRO 12 20 20 PRO PRO T . n B 2 13 GLN 13 21 21 GLN GLN T . n B 2 14 ALA 14 22 22 ALA ALA T . n B 2 15 GLU 15 23 23 GLU GLU T . n B 2 16 GLY 16 24 24 GLY GLY T . n B 2 17 GLN 17 25 25 GLN GLN T . n B 2 18 LEU 18 26 26 LEU LEU T . n B 2 19 GLN 19 27 27 GLN GLN T . n B 2 20 TRP 20 28 28 TRP TRP T . n B 2 21 LEU 21 29 29 LEU LEU T . n B 2 22 ASN 22 30 30 ASN ASN T . n B 2 23 ARG 23 31 31 ARG ARG T . n B 2 24 ARG 24 32 32 ARG ARG T . n B 2 25 ALA 25 33 33 ALA ALA T . n B 2 26 ASN 26 34 34 ASN ASN T . n B 2 27 ALA 27 35 35 ALA ALA T . n B 2 28 LEU 28 36 36 LEU LEU T . n B 2 29 LEU 29 37 37 LEU LEU T . n B 2 30 ALA 30 38 38 ALA ALA T . n B 2 31 ASN 31 39 39 ASN ASN T . n B 2 32 GLY 32 40 40 GLY GLY T . n B 2 33 VAL 33 41 41 VAL VAL T . n B 2 34 GLU 34 42 42 GLU GLU T . n B 2 35 LEU 35 43 43 LEU LEU T . n B 2 36 ARG 36 44 44 ARG ARG T . n B 2 37 ASP 37 45 45 ASP ASP T . n B 2 38 ASN 38 46 46 ASN ASN T . n B 2 39 GLN 39 47 47 GLN GLN T . n B 2 40 LEU 40 48 48 LEU LEU T . n B 2 41 VAL 41 49 49 VAL VAL T . n B 2 42 VAL 42 50 50 VAL VAL T . n B 2 43 PRO 43 51 51 PRO PRO T . n B 2 44 SER 44 52 52 SER SER T . n B 2 45 GLU 45 53 53 GLU GLU T . n B 2 46 GLY 46 54 54 GLY GLY T . n B 2 47 LEU 47 55 55 LEU LEU T . n B 2 48 TYR 48 56 56 TYR TYR T . n B 2 49 LEU 49 57 57 LEU LEU T . n B 2 50 ILE 50 58 58 ILE ILE T . n B 2 51 TYR 51 59 59 TYR TYR T . n B 2 52 SER 52 60 60 SER SER T . n B 2 53 GLN 53 61 61 GLN GLN T . n B 2 54 VAL 54 62 62 VAL VAL T . n B 2 55 LEU 55 63 63 LEU LEU T . n B 2 56 PHE 56 64 64 PHE PHE T . n B 2 57 LYS 57 65 65 LYS LYS T . n B 2 58 GLY 58 66 66 GLY GLY T . n B 2 59 GLN 59 67 67 GLN GLN T . n B 2 60 GLY 60 68 68 GLY GLY T . n B 2 61 CYS 61 69 69 CYS CYS T . n B 2 62 PRO 62 70 70 PRO PRO T . n B 2 63 SER 63 71 71 SER SER T . n B 2 64 THR 64 72 72 THR THR T . n B 2 65 HIS 65 73 73 HIS HIS T . n B 2 66 VAL 66 74 74 VAL VAL T . n B 2 67 LEU 67 75 75 LEU LEU T . n B 2 68 LEU 68 76 76 LEU LEU T . n B 2 69 THR 69 77 77 THR THR T . n B 2 70 HIS 70 78 78 HIS HIS T . n B 2 71 THR 71 79 79 THR THR T . n B 2 72 ILE 72 80 80 ILE ILE T . n B 2 73 SER 73 81 81 SER SER T . n B 2 74 ARG 74 82 82 ARG ARG T . n B 2 75 ILE 75 83 83 ILE ILE T . n B 2 76 ALA 76 84 84 ALA ALA T . n B 2 77 VAL 77 85 85 VAL VAL T . n B 2 78 SER 78 86 86 SER SER T . n B 2 79 TYR 79 87 87 TYR TYR T . n B 2 80 GLN 80 88 88 GLN GLN T . n B 2 81 THR 81 89 89 THR THR T . n B 2 82 LYS 82 90 90 LYS LYS T . n B 2 83 VAL 83 91 91 VAL VAL T . n B 2 84 ASN 84 92 92 ASN ASN T . n B 2 85 LEU 85 93 93 LEU LEU T . n B 2 86 LEU 86 94 94 LEU LEU T . n B 2 87 SER 87 95 95 SER SER T . n B 2 88 ALA 88 96 96 ALA ALA T . n B 2 89 ILE 89 97 97 ILE ILE T . n B 2 90 LYS 90 98 98 LYS LYS T . n B 2 91 SER 91 99 99 SER SER T . n B 2 92 PRO 92 100 100 PRO PRO T . n B 2 93 CYS 93 101 101 CYS CYS T . n B 2 94 GLN 94 102 102 GLN GLN T . n B 2 95 ARG 95 103 103 ARG ARG T . n B 2 96 GLU 96 104 104 GLU GLU T . n B 2 97 THR 97 105 105 THR THR T . n B 2 98 PRO 98 106 106 PRO PRO T . n B 2 99 GLU 99 107 107 GLU GLU T . n B 2 100 GLY 100 108 108 GLY GLY T . n B 2 101 ALA 101 109 109 ALA ALA T . n B 2 102 GLU 102 110 110 GLU GLU T . n B 2 103 ALA 103 111 111 ALA ALA T . n B 2 104 LYS 104 112 112 LYS LYS T . n B 2 105 PRO 105 113 113 PRO PRO T . n B 2 106 TRP 106 114 114 TRP TRP T . n B 2 107 TYR 107 115 115 TYR TYR T . n B 2 108 GLU 108 116 116 GLU GLU T . n B 2 109 PRO 109 117 117 PRO PRO T . n B 2 110 ILE 110 118 118 ILE ILE T . n B 2 111 TYR 111 119 119 TYR TYR T . n B 2 112 LEU 112 120 120 LEU LEU T . n B 2 113 GLY 113 121 121 GLY GLY T . n B 2 114 GLY 114 122 122 GLY GLY T . n B 2 115 VAL 115 123 123 VAL VAL T . n B 2 116 PHE 116 124 124 PHE PHE T . n B 2 117 GLN 117 125 125 GLN GLN T . n B 2 118 LEU 118 126 126 LEU LEU T . n B 2 119 GLU 119 127 127 GLU GLU T . n B 2 120 LYS 120 128 128 LYS LYS T . n B 2 121 GLY 121 129 129 GLY GLY T . n B 2 122 ASP 122 130 130 ASP ASP T . n B 2 123 ARG 123 131 131 ARG ARG T . n B 2 124 LEU 124 132 132 LEU LEU T . n B 2 125 SER 125 133 133 SER SER T . n B 2 126 ALA 126 134 134 ALA ALA T . n B 2 127 GLU 127 135 135 GLU GLU T . n B 2 128 ILE 128 136 136 ILE ILE T . n B 2 129 ASN 129 137 137 ASN ASN T . n B 2 130 ARG 130 138 138 ARG ARG T . n B 2 131 PRO 131 139 139 PRO PRO T . n B 2 132 ASP 132 140 140 ASP ASP T . n B 2 133 TYR 133 141 141 TYR TYR T . n B 2 134 LEU 134 142 142 LEU LEU T . n B 2 135 ASP 135 143 143 ASP ASP T . n B 2 136 PHE 136 144 144 PHE PHE T . n B 2 137 ALA 137 145 145 ALA ALA T . n B 2 138 GLU 138 146 146 GLU GLU T . n B 2 139 SER 139 147 147 SER SER T . n B 2 140 GLY 140 148 148 GLY GLY T . n B 2 141 GLN 141 149 149 GLN GLN T . n B 2 142 VAL 142 150 150 VAL VAL T . n B 2 143 TYR 143 151 151 TYR TYR T . n B 2 144 PHE 144 152 152 PHE PHE T . n B 2 145 GLY 145 153 153 GLY GLY T . n B 2 146 ILE 146 154 154 ILE ILE T . n B 2 147 ILE 147 155 155 ILE ILE T . n B 2 148 ALA 148 156 156 ALA ALA T . n B 2 149 LEU 149 157 157 LEU LEU T . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 497 497 MG MG C . D 4 HOH 1 2 2 HOH HOH C . D 4 HOH 2 4 4 HOH HOH C . D 4 HOH 3 7 7 HOH HOH C . D 4 HOH 4 10 10 HOH HOH C . D 4 HOH 5 11 11 HOH HOH C . D 4 HOH 6 12 12 HOH HOH C . D 4 HOH 7 13 13 HOH HOH C . D 4 HOH 8 15 15 HOH HOH C . D 4 HOH 9 16 16 HOH HOH C . D 4 HOH 10 18 18 HOH HOH C . D 4 HOH 11 21 21 HOH HOH C . D 4 HOH 12 25 25 HOH HOH C . D 4 HOH 13 33 33 HOH HOH C . D 4 HOH 14 34 34 HOH HOH C . D 4 HOH 15 37 37 HOH HOH C . D 4 HOH 16 38 38 HOH HOH C . D 4 HOH 17 39 39 HOH HOH C . D 4 HOH 18 181 181 HOH HOH C . D 4 HOH 19 182 182 HOH HOH C . D 4 HOH 20 183 46 HOH HOH C . D 4 HOH 21 184 48 HOH HOH C . D 4 HOH 22 185 49 HOH HOH C . D 4 HOH 23 186 186 HOH HOH C . D 4 HOH 24 187 187 HOH HOH C . D 4 HOH 25 188 188 HOH HOH C . D 4 HOH 26 189 189 HOH HOH C . D 4 HOH 27 190 50 HOH HOH C . D 4 HOH 28 191 58 HOH HOH C . D 4 HOH 29 192 60 HOH HOH C . D 4 HOH 30 193 64 HOH HOH C . D 4 HOH 31 194 65 HOH HOH C . D 4 HOH 32 195 69 HOH HOH C . D 4 HOH 33 196 72 HOH HOH C . D 4 HOH 34 197 197 HOH HOH C . D 4 HOH 35 198 75 HOH HOH C . D 4 HOH 36 199 76 HOH HOH C . D 4 HOH 37 200 77 HOH HOH C . D 4 HOH 38 201 80 HOH HOH C . D 4 HOH 39 202 83 HOH HOH C . D 4 HOH 40 203 84 HOH HOH C . D 4 HOH 41 204 204 HOH HOH C . D 4 HOH 42 205 89 HOH HOH C . D 4 HOH 43 206 91 HOH HOH C . D 4 HOH 44 207 92 HOH HOH C . D 4 HOH 45 208 208 HOH HOH C . D 4 HOH 46 209 95 HOH HOH C . D 4 HOH 47 210 210 HOH HOH C . D 4 HOH 48 211 211 HOH HOH C . D 4 HOH 49 212 212 HOH HOH C . D 4 HOH 50 213 213 HOH HOH C . D 4 HOH 51 214 214 HOH HOH C . D 4 HOH 52 215 97 HOH HOH C . D 4 HOH 53 216 106 HOH HOH C . D 4 HOH 54 217 109 HOH HOH C . D 4 HOH 55 218 113 HOH HOH C . D 4 HOH 56 219 219 HOH HOH C . D 4 HOH 57 220 220 HOH HOH C . D 4 HOH 58 221 221 HOH HOH C . D 4 HOH 59 222 114 HOH HOH C . D 4 HOH 60 223 115 HOH HOH C . D 4 HOH 61 224 224 HOH HOH C . D 4 HOH 62 225 225 HOH HOH C . D 4 HOH 63 226 226 HOH HOH C . D 4 HOH 64 227 227 HOH HOH C . D 4 HOH 65 228 228 HOH HOH C . D 4 HOH 66 229 229 HOH HOH C . D 4 HOH 67 230 230 HOH HOH C . D 4 HOH 68 231 231 HOH HOH C . D 4 HOH 69 232 232 HOH HOH C . D 4 HOH 70 233 233 HOH HOH C . D 4 HOH 71 234 234 HOH HOH C . D 4 HOH 72 235 235 HOH HOH C . D 4 HOH 73 236 236 HOH HOH C . D 4 HOH 74 237 118 HOH HOH C . D 4 HOH 75 238 119 HOH HOH C . D 4 HOH 76 239 122 HOH HOH C . D 4 HOH 77 240 125 HOH HOH C . D 4 HOH 78 241 126 HOH HOH C . D 4 HOH 79 242 127 HOH HOH C . D 4 HOH 80 243 129 HOH HOH C . D 4 HOH 81 244 131 HOH HOH C . D 4 HOH 82 245 245 HOH HOH C . D 4 HOH 83 246 246 HOH HOH C . D 4 HOH 84 247 134 HOH HOH C . D 4 HOH 85 248 135 HOH HOH C . D 4 HOH 86 249 148 HOH HOH C . D 4 HOH 87 250 149 HOH HOH C . D 4 HOH 88 251 152 HOH HOH C . D 4 HOH 89 252 153 HOH HOH C . D 4 HOH 90 253 154 HOH HOH C . D 4 HOH 91 254 156 HOH HOH C . D 4 HOH 92 255 159 HOH HOH C . D 4 HOH 93 256 161 HOH HOH C . D 4 HOH 94 257 167 HOH HOH C . D 4 HOH 95 258 169 HOH HOH C . D 4 HOH 96 259 171 HOH HOH C . D 4 HOH 97 260 172 HOH HOH C . D 4 HOH 98 261 173 HOH HOH C . D 4 HOH 99 262 174 HOH HOH C . D 4 HOH 100 263 175 HOH HOH C . D 4 HOH 101 264 177 HOH HOH C . D 4 HOH 102 265 180 HOH HOH C . D 4 HOH 103 266 191 HOH HOH C . E 4 HOH 1 1 1 HOH HOH T . E 4 HOH 2 3 3 HOH HOH T . E 4 HOH 3 5 5 HOH HOH T . E 4 HOH 4 6 6 HOH HOH T . E 4 HOH 5 8 8 HOH HOH T . E 4 HOH 6 158 158 HOH HOH T . E 4 HOH 7 159 9 HOH HOH T . E 4 HOH 8 160 160 HOH HOH T . E 4 HOH 9 161 14 HOH HOH T . E 4 HOH 10 162 162 HOH HOH T . E 4 HOH 11 163 163 HOH HOH T . E 4 HOH 12 164 164 HOH HOH T . E 4 HOH 13 165 165 HOH HOH T . E 4 HOH 14 166 166 HOH HOH T . E 4 HOH 15 167 17 HOH HOH T . E 4 HOH 16 168 168 HOH HOH T . E 4 HOH 17 169 19 HOH HOH T . E 4 HOH 18 170 170 HOH HOH T . E 4 HOH 19 171 20 HOH HOH T . E 4 HOH 20 172 22 HOH HOH T . E 4 HOH 21 173 23 HOH HOH T . E 4 HOH 22 174 24 HOH HOH T . E 4 HOH 23 175 26 HOH HOH T . E 4 HOH 24 176 176 HOH HOH T . E 4 HOH 25 177 27 HOH HOH T . E 4 HOH 26 178 178 HOH HOH T . E 4 HOH 27 179 179 HOH HOH T . E 4 HOH 28 180 28 HOH HOH T . E 4 HOH 29 181 29 HOH HOH T . E 4 HOH 30 182 30 HOH HOH T . E 4 HOH 31 183 183 HOH HOH T . E 4 HOH 32 184 184 HOH HOH T . E 4 HOH 33 185 185 HOH HOH T . E 4 HOH 34 186 31 HOH HOH T . E 4 HOH 35 187 32 HOH HOH T . E 4 HOH 36 188 35 HOH HOH T . E 4 HOH 37 189 36 HOH HOH T . E 4 HOH 38 190 190 HOH HOH T . E 4 HOH 39 192 192 HOH HOH T . E 4 HOH 40 193 193 HOH HOH T . E 4 HOH 41 194 194 HOH HOH T . E 4 HOH 42 195 195 HOH HOH T . E 4 HOH 43 196 196 HOH HOH T . E 4 HOH 44 197 40 HOH HOH T . E 4 HOH 45 198 198 HOH HOH T . E 4 HOH 46 199 199 HOH HOH T . E 4 HOH 47 200 200 HOH HOH T . E 4 HOH 48 201 201 HOH HOH T . E 4 HOH 49 202 202 HOH HOH T . E 4 HOH 50 203 203 HOH HOH T . E 4 HOH 51 204 41 HOH HOH T . E 4 HOH 52 205 205 HOH HOH T . E 4 HOH 53 206 206 HOH HOH T . E 4 HOH 54 207 207 HOH HOH T . E 4 HOH 55 208 42 HOH HOH T . E 4 HOH 56 209 209 HOH HOH T . E 4 HOH 57 210 43 HOH HOH T . E 4 HOH 58 211 44 HOH HOH T . E 4 HOH 59 212 45 HOH HOH T . E 4 HOH 60 213 47 HOH HOH T . E 4 HOH 61 214 51 HOH HOH T . E 4 HOH 62 215 215 HOH HOH T . E 4 HOH 63 216 216 HOH HOH T . E 4 HOH 64 217 217 HOH HOH T . E 4 HOH 65 218 218 HOH HOH T . E 4 HOH 66 219 52 HOH HOH T . E 4 HOH 67 220 53 HOH HOH T . E 4 HOH 68 221 54 HOH HOH T . E 4 HOH 69 222 222 HOH HOH T . E 4 HOH 70 223 223 HOH HOH T . E 4 HOH 71 224 55 HOH HOH T . E 4 HOH 72 225 56 HOH HOH T . E 4 HOH 73 226 57 HOH HOH T . E 4 HOH 74 227 59 HOH HOH T . E 4 HOH 75 228 61 HOH HOH T . E 4 HOH 76 229 62 HOH HOH T . E 4 HOH 77 230 63 HOH HOH T . E 4 HOH 78 231 66 HOH HOH T . E 4 HOH 79 232 67 HOH HOH T . E 4 HOH 80 233 68 HOH HOH T . E 4 HOH 81 234 70 HOH HOH T . E 4 HOH 82 235 71 HOH HOH T . E 4 HOH 83 236 73 HOH HOH T . E 4 HOH 84 237 237 HOH HOH T . E 4 HOH 85 238 238 HOH HOH T . E 4 HOH 86 239 239 HOH HOH T . E 4 HOH 87 240 240 HOH HOH T . E 4 HOH 88 241 241 HOH HOH T . E 4 HOH 89 242 242 HOH HOH T . E 4 HOH 90 243 243 HOH HOH T . E 4 HOH 91 244 244 HOH HOH T . E 4 HOH 92 245 74 HOH HOH T . E 4 HOH 93 246 78 HOH HOH T . E 4 HOH 94 247 79 HOH HOH T . E 4 HOH 95 248 81 HOH HOH T . E 4 HOH 96 249 82 HOH HOH T . E 4 HOH 97 250 85 HOH HOH T . E 4 HOH 98 251 86 HOH HOH T . E 4 HOH 99 252 87 HOH HOH T . E 4 HOH 100 253 88 HOH HOH T . E 4 HOH 101 254 90 HOH HOH T . E 4 HOH 102 255 93 HOH HOH T . E 4 HOH 103 256 94 HOH HOH T . E 4 HOH 104 257 96 HOH HOH T . E 4 HOH 105 258 98 HOH HOH T . E 4 HOH 106 259 99 HOH HOH T . E 4 HOH 107 260 100 HOH HOH T . E 4 HOH 108 261 101 HOH HOH T . E 4 HOH 109 262 102 HOH HOH T . E 4 HOH 110 263 103 HOH HOH T . E 4 HOH 111 264 104 HOH HOH T . E 4 HOH 112 265 105 HOH HOH T . E 4 HOH 113 266 107 HOH HOH T . E 4 HOH 114 267 108 HOH HOH T . E 4 HOH 115 268 110 HOH HOH T . E 4 HOH 116 269 111 HOH HOH T . E 4 HOH 117 270 112 HOH HOH T . E 4 HOH 118 271 116 HOH HOH T . E 4 HOH 119 272 117 HOH HOH T . E 4 HOH 120 273 120 HOH HOH T . E 4 HOH 121 274 121 HOH HOH T . E 4 HOH 122 275 123 HOH HOH T . E 4 HOH 123 276 124 HOH HOH T . E 4 HOH 124 277 128 HOH HOH T . E 4 HOH 125 278 130 HOH HOH T . E 4 HOH 126 279 132 HOH HOH T . E 4 HOH 127 280 133 HOH HOH T . E 4 HOH 128 281 136 HOH HOH T . E 4 HOH 129 282 137 HOH HOH T . E 4 HOH 130 283 138 HOH HOH T . E 4 HOH 131 284 139 HOH HOH T . E 4 HOH 132 285 140 HOH HOH T . E 4 HOH 133 286 141 HOH HOH T . E 4 HOH 134 287 142 HOH HOH T . E 4 HOH 135 288 143 HOH HOH T . E 4 HOH 136 289 144 HOH HOH T . E 4 HOH 137 290 145 HOH HOH T . E 4 HOH 138 291 146 HOH HOH T . E 4 HOH 139 292 147 HOH HOH T . E 4 HOH 140 293 150 HOH HOH T . E 4 HOH 141 294 151 HOH HOH T . E 4 HOH 142 295 155 HOH HOH T . E 4 HOH 143 296 157 HOH HOH T . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 T HOH 200 ? E HOH . 2 1 T HOH 283 ? E HOH . 3 1 T HOH 284 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? C HOH 202 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 210 ? 1_555 90.2 ? 2 O ? D HOH . ? C HOH 202 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 221 ? 1_555 171.2 ? 3 O ? D HOH . ? C HOH 210 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 221 ? 1_555 86.1 ? 4 O ? D HOH . ? C HOH 202 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 245 ? 1_555 95.2 ? 5 O ? D HOH . ? C HOH 210 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 245 ? 1_555 172.3 ? 6 O ? D HOH . ? C HOH 221 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 245 ? 1_555 89.3 ? 7 O ? D HOH . ? C HOH 202 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 246 ? 1_555 92.7 ? 8 O ? D HOH . ? C HOH 210 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 246 ? 1_555 92.8 ? 9 O ? D HOH . ? C HOH 221 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 246 ? 1_555 95.5 ? 10 O ? D HOH . ? C HOH 245 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 246 ? 1_555 81.5 ? 11 O ? D HOH . ? C HOH 202 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 251 ? 1_555 90.3 ? 12 O ? D HOH . ? C HOH 210 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 251 ? 1_555 96.2 ? 13 O ? D HOH . ? C HOH 221 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 251 ? 1_555 82.2 ? 14 O ? D HOH . ? C HOH 245 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 251 ? 1_555 89.2 ? 15 O ? D HOH . ? C HOH 246 ? 1_555 MG ? C MG . ? C MG 497 ? 1_555 O ? D HOH . ? C HOH 251 ? 1_555 170.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-02-26 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 4 'Structure model' exptl_crystal_grow 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' diffrn_source 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' pdbx_struct_conn_angle 9 5 'Structure model' struct_conn 10 5 'Structure model' struct_ref_seq 11 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 4 'Structure model' '_exptl_crystal_grow.pdbx_details' 3 4 'Structure model' '_exptl_crystal_grow.temp' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.value' 10 5 'Structure model' '_struct_conn.pdbx_dist_value' 11 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 5 'Structure model' '_struct_ref_seq.db_align_end' 22 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 PHASES . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3L9J _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE NUMBER 52 IS SIMPLY SKIPPED IN CHAIN C.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O T HOH 174 ? ? O T HOH 244 ? ? 1.85 2 1 O C HOH 226 ? ? O C HOH 227 ? ? 1.92 3 1 O C HOH 224 ? ? O C HOH 225 ? ? 2.04 4 1 O C HOH 10 ? ? O T HOH 257 ? ? 2.11 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O T HOH 206 ? ? 1_555 O T HOH 217 ? ? 2_665 1.96 2 1 O T HOH 217 ? ? 1_555 O T HOH 217 ? ? 2_665 1.99 3 1 O T HOH 218 ? ? 1_555 O T HOH 218 ? ? 2_665 2.14 4 1 O T HOH 201 ? ? 1_555 O T HOH 201 ? ? 2_665 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG C 120 ? ? 77.62 -50.97 2 1 ASN C 135 ? ? -140.65 45.41 3 1 LEU T 37 ? ? -159.74 79.17 4 1 TYR T 87 ? ? 75.37 -6.69 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LEU 46 ? CG ? A LEU 1 CG 2 1 Y 1 C LEU 46 ? CD1 ? A LEU 1 CD1 3 1 Y 1 C LEU 46 ? CD2 ? A LEU 1 CD2 4 1 Y 1 C LEU 51 ? CG ? A LEU 6 CG 5 1 Y 1 C LEU 51 ? CD1 ? A LEU 6 CD1 6 1 Y 1 C LEU 51 ? CD2 ? A LEU 6 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C LYS 53 ? A LYS 7 2 1 Y 1 C GLY 54 ? A GLY 8 3 1 Y 1 C THR 55 ? A THR 9 4 1 Y 1 C LYS 56 ? A LYS 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MG MG MG N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1TNF ;PDB ENTRY 1TNF for chain T and 1TN3 for chain C; For 1TN3 the randomized loops was removed from teh search model. These loop is 116-122 (loop 1) and 145-150 (loop 4) ; 2 ? 'experimental model' PDB 1TN3 ;PDB ENTRY 1TNF for chain T and 1TN3 for chain C; For 1TN3 the randomized loops was removed from teh search model. These loop is 116-122 (loop 1) and 145-150 (loop 4) ; #