data_3LRR # _entry.id 3LRR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LRR pdb_00003lrr 10.2210/pdb3lrr/pdb NDB NA0468 ? ? RCSB RCSB057647 ? ? WWPDB D_1000057647 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3LRN _pdbx_database_related.details ;Crystal structure of human RIG-I CTD bound to a 14 bp GC rich 5' ppp dsRNA ; _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LRR _pdbx_database_status.recvd_initial_deposition_date 2010-02-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Li, P.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;The Structural Basis of 5' Triphosphate Double-Stranded RNA Recognition by RIG-I C-Terminal Domain. ; _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 1032 _citation.page_last 1043 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20637642 _citation.pdbx_database_id_DOI 10.1016/j.str.2010.05.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lu, C.' 1 ? primary 'Xu, H.' 2 ? primary 'Ranjith-Kumar, C.T.' 3 ? primary 'Brooks, M.T.' 4 ? primary 'Hou, T.Y.' 5 ? primary 'Hu, F.' 6 ? primary 'Herr, A.B.' 7 ? primary 'Strong, R.K.' 8 ? primary 'Kao, C.C.' 9 ? primary 'Li, P.' 10 ? # _cell.entry_id 3LRR _cell.length_a 83.010 _cell.length_b 83.010 _cell.length_c 111.220 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LRR _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable ATP-dependent RNA helicase DDX58' 14203.516 2 3.6.1.- ? 'RIG-I CTD (UNP residues 803 to 923)' ? 2 polymer syn ;RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U)-3') ; 3927.232 2 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DEAD-box protein 58, Retinoic acid-inducible gene 1 protein, RIG-1, Retinoic acid-inducible gene I protein, RIG-I' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;KENKKLLCRKCKALACYTADVRVIEESHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTF EIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM ; ;KENKKLLCRKCKALACYTADVRVIEESHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTF EIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM ; A,B ? 2 polyribonucleotide no yes '(ATP)UAUAUAUAUAU' XUAUAUAUAUAU C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 GLU n 1 3 ASN n 1 4 LYS n 1 5 LYS n 1 6 LEU n 1 7 LEU n 1 8 CYS n 1 9 ARG n 1 10 LYS n 1 11 CYS n 1 12 LYS n 1 13 ALA n 1 14 LEU n 1 15 ALA n 1 16 CYS n 1 17 TYR n 1 18 THR n 1 19 ALA n 1 20 ASP n 1 21 VAL n 1 22 ARG n 1 23 VAL n 1 24 ILE n 1 25 GLU n 1 26 GLU n 1 27 SER n 1 28 HIS n 1 29 TYR n 1 30 THR n 1 31 VAL n 1 32 LEU n 1 33 GLY n 1 34 ASP n 1 35 ALA n 1 36 PHE n 1 37 LYS n 1 38 GLU n 1 39 CYS n 1 40 PHE n 1 41 VAL n 1 42 SER n 1 43 ARG n 1 44 PRO n 1 45 HIS n 1 46 PRO n 1 47 LYS n 1 48 PRO n 1 49 LYS n 1 50 GLN n 1 51 PHE n 1 52 SER n 1 53 SER n 1 54 PHE n 1 55 GLU n 1 56 LYS n 1 57 ARG n 1 58 ALA n 1 59 LYS n 1 60 ILE n 1 61 PHE n 1 62 CYS n 1 63 ALA n 1 64 ARG n 1 65 GLN n 1 66 ASN n 1 67 CYS n 1 68 SER n 1 69 HIS n 1 70 ASP n 1 71 TRP n 1 72 GLY n 1 73 ILE n 1 74 HIS n 1 75 VAL n 1 76 LYS n 1 77 TYR n 1 78 LYS n 1 79 THR n 1 80 PHE n 1 81 GLU n 1 82 ILE n 1 83 PRO n 1 84 VAL n 1 85 ILE n 1 86 LYS n 1 87 ILE n 1 88 GLU n 1 89 SER n 1 90 PHE n 1 91 VAL n 1 92 VAL n 1 93 GLU n 1 94 ASP n 1 95 ILE n 1 96 ALA n 1 97 THR n 1 98 GLY n 1 99 VAL n 1 100 GLN n 1 101 THR n 1 102 LEU n 1 103 TYR n 1 104 SER n 1 105 LYS n 1 106 TRP n 1 107 LYS n 1 108 ASP n 1 109 PHE n 1 110 HIS n 1 111 PHE n 1 112 GLU n 1 113 LYS n 1 114 ILE n 1 115 PRO n 1 116 PHE n 1 117 ASP n 1 118 PRO n 1 119 ALA n 1 120 GLU n 1 121 MET n 2 1 ATP n 2 2 U n 2 3 A n 2 4 U n 2 5 A n 2 6 U n 2 7 A n 2 8 U n 2 9 A n 2 10 U n 2 11 A n 2 12 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DDX58, RIG-I' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'C-terminal Histag' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'In vitro transcribed RNA with T7 RNA polymerase' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DDX58_HUMAN O95786 1 ;KENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTF EIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM ; 803 ? 2 PDB 3LRR 3LRR 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LRR A 1 ? 121 ? O95786 803 ? 923 ? 803 923 2 1 3LRR B 1 ? 121 ? O95786 803 ? 923 ? 803 923 3 2 3LRR C 1 ? 12 ? 3LRR 1 ? 12 ? 1 12 4 2 3LRR D 1 ? 12 ? 3LRR 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LRR SER A 27 ? UNP O95786 CYS 829 'engineered mutation' 829 1 2 3LRR SER B 27 ? UNP O95786 CYS 829 'engineered mutation' 829 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ATP non-polymer . "ADENOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3LRR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.05 _exptl_crystal.density_percent_sol 59.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'PEG 3,350 (15%) plus ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 174 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2009-09-01 _diffrn_detector.details Osmic # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Osmic _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.542 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.542 # _reflns.entry_id 3LRR _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.15 _reflns.number_obs 22092 _reflns.number_all 23670 _reflns.percent_possible_obs 93.5 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_Rsym_value 0.071 _reflns.pdbx_netI_over_sigmaI 36.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.23 _reflns_shell.percent_possible_all 90.4 _reflns_shell.Rmerge_I_obs 0.457 _reflns_shell.pdbx_Rsym_value 0.457 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2119 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3LRR _refine.ls_number_reflns_obs 20357 _refine.ls_number_reflns_all 23670 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.19 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 91.8 _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_all 0.187 _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1407 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method Rfree _refine.details ;Refined with CNS 1.1 again twinned data. Twin fraction, 0.478 ; _refine.pdbx_starting_model 'Free RIG-I CTD, pdb ID. 2QFB chain A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1998 _refine_hist.pdbx_number_atoms_nucleic_acid 522 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2522 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 30.19 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_d 1.54 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.15 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.187 _refine_ls_shell.percent_reflns_obs 86.0 _refine_ls_shell.R_factor_R_free 0.228 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 1407 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 20357 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LRR _struct.title ;Crystal structure of human RIG-I CTD bound to a 12 bp AU rich 5' ppp dsRNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LRR _struct_keywords.pdbx_keywords HYDROLASE/RNA _struct_keywords.text ;Innate immunity, viral RNA, RIG-I like receptors, Antiviral defense, ATP-binding, Helicase, Hydrolase, Immune response, Metal-binding, Nucleotide-binding, RNA-binding, HYDROLASE-RNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Authors state that the asymmetric unit contains a 2:1 complex of human RIG-I CTD bound to a 12 bp dsRNA' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 33 ? GLU A 38 ? GLY A 835 GLU A 840 1 ? 6 HELX_P HELX_P2 2 ASP A 117 ? MET A 121 ? ASP A 919 MET A 923 5 ? 5 HELX_P HELX_P3 3 GLY B 33 ? GLU B 38 ? GLY B 835 GLU B 840 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 8 SG ? ? A ZN 1 A CYS 810 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc2 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 11 SG ? ? A ZN 1 A CYS 813 1_555 ? ? ? ? ? ? ? 2.420 ? ? metalc3 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 62 SG ? ? A ZN 1 A CYS 864 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc4 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 67 SG ? ? A ZN 1 A CYS 869 1_555 ? ? ? ? ? ? ? 2.266 ? ? metalc5 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 8 SG ? ? B ZN 2 B CYS 810 1_555 ? ? ? ? ? ? ? 2.582 ? ? metalc6 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 11 SG ? ? B ZN 2 B CYS 813 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 62 SG ? ? B ZN 2 B CYS 864 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc8 metalc ? ? F ZN . ZN ? ? ? 1_555 B CYS 67 SG ? ? B ZN 2 B CYS 869 1_555 ? ? ? ? ? ? ? 2.342 ? ? hydrog1 hydrog ? ? C ATP 1 N1 ? ? ? 1_555 D U 12 N3 ? ? C ATP 1 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C ATP 1 N6 ? ? ? 1_555 D U 12 O4 ? ? C ATP 1 D U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C U 2 N3 ? ? ? 1_555 D A 11 N1 ? ? C U 2 D A 11 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog4 hydrog ? ? C A 3 N1 ? ? ? 1_555 D U 10 N3 ? ? C A 3 D U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C A 3 N6 ? ? ? 1_555 D U 10 O4 ? ? C A 3 D U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C U 4 N3 ? ? ? 1_555 D A 9 N1 ? ? C U 4 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C U 4 O4 ? ? ? 1_555 D A 9 N6 ? ? C U 4 D A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 8 N3 ? ? C A 5 D U 8 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog9 hydrog ? ? C U 6 N3 ? ? ? 1_555 D A 7 N1 ? ? C U 6 D A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C U 6 O4 ? ? ? 1_555 D A 7 N6 ? ? C U 6 D A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C A 7 N1 ? ? ? 1_555 D U 6 N3 ? ? C A 7 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C A 7 N6 ? ? ? 1_555 D U 6 O4 ? ? C A 7 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C A 9 N1 ? ? ? 1_555 D U 4 N3 ? ? C A 9 D U 4 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog14 hydrog ? ? C U 10 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 10 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C U 10 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 10 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C A 11 N1 ? ? ? 1_555 D U 2 N3 ? ? C A 11 D U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C A 11 N6 ? ? ? 1_555 D U 2 O4 ? ? C A 11 D U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C U 12 N3 ? ? ? 1_555 D ATP 1 N1 ? ? C U 12 D ATP 1 1_555 ? ? ? ? ? ? 'U-ATP PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? D ? 4 ? E ? 4 ? F ? 3 ? G ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 14 ? TYR A 17 ? LEU A 816 TYR A 819 A 2 LYS A 4 ? CYS A 8 ? LYS A 806 CYS A 810 A 3 PHE A 90 ? ASP A 94 ? PHE A 892 ASP A 896 A 4 GLN A 100 ? THR A 101 ? GLN A 902 THR A 903 B 1 VAL A 21 ? ILE A 24 ? VAL A 823 ILE A 826 B 2 HIS A 28 ? VAL A 31 ? HIS A 830 VAL A 833 C 1 PHE A 40 ? PRO A 44 ? PHE A 842 PRO A 846 C 2 PHE A 54 ? CYS A 62 ? PHE A 856 CYS A 864 C 3 GLN A 50 ? PHE A 51 ? GLN A 852 PHE A 853 D 1 PHE A 40 ? PRO A 44 ? PHE A 842 PRO A 846 D 2 PHE A 54 ? CYS A 62 ? PHE A 856 CYS A 864 D 3 ASP A 70 ? TYR A 77 ? ASP A 872 TYR A 879 D 4 PHE A 80 ? ILE A 85 ? PHE A 882 ILE A 887 E 1 LEU B 14 ? TYR B 17 ? LEU B 816 TYR B 819 E 2 LYS B 4 ? CYS B 8 ? LYS B 806 CYS B 810 E 3 PHE B 90 ? ASP B 94 ? PHE B 892 ASP B 896 E 4 GLN B 100 ? THR B 101 ? GLN B 902 THR B 903 F 1 HIS B 28 ? VAL B 31 ? HIS B 830 VAL B 833 F 2 VAL B 21 ? ILE B 24 ? VAL B 823 ILE B 826 F 3 ILE B 114 ? PRO B 115 ? ILE B 916 PRO B 917 G 1 PHE B 40 ? GLN B 50 ? PHE B 842 GLN B 852 G 2 PHE B 54 ? CYS B 62 ? PHE B 856 CYS B 864 G 3 ASP B 70 ? TYR B 77 ? ASP B 872 TYR B 879 G 4 PHE B 80 ? ILE B 85 ? PHE B 882 ILE B 887 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 15 ? O ALA A 817 N LEU A 6 ? N LEU A 808 A 2 3 N LEU A 7 ? N LEU A 809 O VAL A 91 ? O VAL A 893 A 3 4 N VAL A 92 ? N VAL A 894 O THR A 101 ? O THR A 903 B 1 2 N ARG A 22 ? N ARG A 824 O THR A 30 ? O THR A 832 C 1 2 N ARG A 43 ? N ARG A 845 O LYS A 59 ? O LYS A 861 C 2 3 O PHE A 54 ? O PHE A 856 N PHE A 51 ? N PHE A 853 D 1 2 N ARG A 43 ? N ARG A 845 O LYS A 59 ? O LYS A 861 D 2 3 N ILE A 60 ? N ILE A 862 O TRP A 71 ? O TRP A 873 D 3 4 N TYR A 77 ? N TYR A 879 O PHE A 80 ? O PHE A 882 E 1 2 O ALA B 15 ? O ALA B 817 N LEU B 6 ? N LEU B 808 E 2 3 N LEU B 7 ? N LEU B 809 O VAL B 91 ? O VAL B 893 E 3 4 N VAL B 92 ? N VAL B 894 O THR B 101 ? O THR B 903 F 1 2 O HIS B 28 ? O HIS B 830 N ILE B 24 ? N ILE B 826 F 2 3 N VAL B 23 ? N VAL B 825 O ILE B 114 ? O ILE B 916 G 1 2 N VAL B 41 ? N VAL B 843 O PHE B 61 ? O PHE B 863 G 2 3 N ILE B 60 ? N ILE B 862 O TRP B 71 ? O TRP B 873 G 3 4 N TYR B 77 ? N TYR B 879 O PHE B 80 ? O PHE B 882 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1 ? 4 'BINDING SITE FOR RESIDUE ZN A 1' AC2 Software B ZN 2 ? 4 'BINDING SITE FOR RESIDUE ZN B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 8 ? CYS A 810 . ? 1_555 ? 2 AC1 4 CYS A 11 ? CYS A 813 . ? 1_555 ? 3 AC1 4 CYS A 62 ? CYS A 864 . ? 1_555 ? 4 AC1 4 CYS A 67 ? CYS A 869 . ? 1_555 ? 5 AC2 4 CYS B 8 ? CYS B 810 . ? 1_555 ? 6 AC2 4 CYS B 11 ? CYS B 813 . ? 1_555 ? 7 AC2 4 CYS B 62 ? CYS B 864 . ? 1_555 ? 8 AC2 4 CYS B 67 ? CYS B 869 . ? 1_555 ? # _database_PDB_matrix.entry_id 3LRR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LRR _atom_sites.fract_transf_matrix[1][1] 0.012047 _atom_sites.fract_transf_matrix[1][2] 0.006955 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013910 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008991 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 803 803 LYS LYS A . n A 1 2 GLU 2 804 804 GLU GLU A . n A 1 3 ASN 3 805 805 ASN ASN A . n A 1 4 LYS 4 806 806 LYS LYS A . n A 1 5 LYS 5 807 807 LYS LYS A . n A 1 6 LEU 6 808 808 LEU LEU A . n A 1 7 LEU 7 809 809 LEU LEU A . n A 1 8 CYS 8 810 810 CYS CYS A . n A 1 9 ARG 9 811 811 ARG ARG A . n A 1 10 LYS 10 812 812 LYS LYS A . n A 1 11 CYS 11 813 813 CYS CYS A . n A 1 12 LYS 12 814 814 LYS LYS A . n A 1 13 ALA 13 815 815 ALA ALA A . n A 1 14 LEU 14 816 816 LEU LEU A . n A 1 15 ALA 15 817 817 ALA ALA A . n A 1 16 CYS 16 818 818 CYS CYS A . n A 1 17 TYR 17 819 819 TYR TYR A . n A 1 18 THR 18 820 820 THR THR A . n A 1 19 ALA 19 821 821 ALA ALA A . n A 1 20 ASP 20 822 822 ASP ASP A . n A 1 21 VAL 21 823 823 VAL VAL A . n A 1 22 ARG 22 824 824 ARG ARG A . n A 1 23 VAL 23 825 825 VAL VAL A . n A 1 24 ILE 24 826 826 ILE ILE A . n A 1 25 GLU 25 827 827 GLU GLU A . n A 1 26 GLU 26 828 828 GLU GLU A . n A 1 27 SER 27 829 829 SER SER A . n A 1 28 HIS 28 830 830 HIS HIS A . n A 1 29 TYR 29 831 831 TYR TYR A . n A 1 30 THR 30 832 832 THR THR A . n A 1 31 VAL 31 833 833 VAL VAL A . n A 1 32 LEU 32 834 834 LEU LEU A . n A 1 33 GLY 33 835 835 GLY GLY A . n A 1 34 ASP 34 836 836 ASP ASP A . n A 1 35 ALA 35 837 837 ALA ALA A . n A 1 36 PHE 36 838 838 PHE PHE A . n A 1 37 LYS 37 839 839 LYS LYS A . n A 1 38 GLU 38 840 840 GLU GLU A . n A 1 39 CYS 39 841 841 CYS CYS A . n A 1 40 PHE 40 842 842 PHE PHE A . n A 1 41 VAL 41 843 843 VAL VAL A . n A 1 42 SER 42 844 844 SER SER A . n A 1 43 ARG 43 845 845 ARG ARG A . n A 1 44 PRO 44 846 846 PRO PRO A . n A 1 45 HIS 45 847 847 HIS HIS A . n A 1 46 PRO 46 848 848 PRO PRO A . n A 1 47 LYS 47 849 849 LYS LYS A . n A 1 48 PRO 48 850 850 PRO PRO A . n A 1 49 LYS 49 851 851 LYS LYS A . n A 1 50 GLN 50 852 852 GLN GLN A . n A 1 51 PHE 51 853 853 PHE PHE A . n A 1 52 SER 52 854 854 SER SER A . n A 1 53 SER 53 855 855 SER SER A . n A 1 54 PHE 54 856 856 PHE PHE A . n A 1 55 GLU 55 857 857 GLU GLU A . n A 1 56 LYS 56 858 858 LYS LYS A . n A 1 57 ARG 57 859 859 ARG ARG A . n A 1 58 ALA 58 860 860 ALA ALA A . n A 1 59 LYS 59 861 861 LYS LYS A . n A 1 60 ILE 60 862 862 ILE ILE A . n A 1 61 PHE 61 863 863 PHE PHE A . n A 1 62 CYS 62 864 864 CYS CYS A . n A 1 63 ALA 63 865 865 ALA ALA A . n A 1 64 ARG 64 866 866 ARG ARG A . n A 1 65 GLN 65 867 867 GLN GLN A . n A 1 66 ASN 66 868 868 ASN ASN A . n A 1 67 CYS 67 869 869 CYS CYS A . n A 1 68 SER 68 870 870 SER SER A . n A 1 69 HIS 69 871 871 HIS HIS A . n A 1 70 ASP 70 872 872 ASP ASP A . n A 1 71 TRP 71 873 873 TRP TRP A . n A 1 72 GLY 72 874 874 GLY GLY A . n A 1 73 ILE 73 875 875 ILE ILE A . n A 1 74 HIS 74 876 876 HIS HIS A . n A 1 75 VAL 75 877 877 VAL VAL A . n A 1 76 LYS 76 878 878 LYS LYS A . n A 1 77 TYR 77 879 879 TYR TYR A . n A 1 78 LYS 78 880 880 LYS LYS A . n A 1 79 THR 79 881 881 THR THR A . n A 1 80 PHE 80 882 882 PHE PHE A . n A 1 81 GLU 81 883 883 GLU GLU A . n A 1 82 ILE 82 884 884 ILE ILE A . n A 1 83 PRO 83 885 885 PRO PRO A . n A 1 84 VAL 84 886 886 VAL VAL A . n A 1 85 ILE 85 887 887 ILE ILE A . n A 1 86 LYS 86 888 888 LYS LYS A . n A 1 87 ILE 87 889 889 ILE ILE A . n A 1 88 GLU 88 890 890 GLU GLU A . n A 1 89 SER 89 891 891 SER SER A . n A 1 90 PHE 90 892 892 PHE PHE A . n A 1 91 VAL 91 893 893 VAL VAL A . n A 1 92 VAL 92 894 894 VAL VAL A . n A 1 93 GLU 93 895 895 GLU GLU A . n A 1 94 ASP 94 896 896 ASP ASP A . n A 1 95 ILE 95 897 897 ILE ILE A . n A 1 96 ALA 96 898 898 ALA ALA A . n A 1 97 THR 97 899 899 THR THR A . n A 1 98 GLY 98 900 900 GLY GLY A . n A 1 99 VAL 99 901 901 VAL VAL A . n A 1 100 GLN 100 902 902 GLN GLN A . n A 1 101 THR 101 903 903 THR THR A . n A 1 102 LEU 102 904 904 LEU LEU A . n A 1 103 TYR 103 905 905 TYR TYR A . n A 1 104 SER 104 906 906 SER SER A . n A 1 105 LYS 105 907 907 LYS LYS A . n A 1 106 TRP 106 908 908 TRP TRP A . n A 1 107 LYS 107 909 909 LYS LYS A . n A 1 108 ASP 108 910 910 ASP ASP A . n A 1 109 PHE 109 911 911 PHE PHE A . n A 1 110 HIS 110 912 912 HIS HIS A . n A 1 111 PHE 111 913 913 PHE PHE A . n A 1 112 GLU 112 914 914 GLU GLU A . n A 1 113 LYS 113 915 915 LYS LYS A . n A 1 114 ILE 114 916 916 ILE ILE A . n A 1 115 PRO 115 917 917 PRO PRO A . n A 1 116 PHE 116 918 918 PHE PHE A . n A 1 117 ASP 117 919 919 ASP ASP A . n A 1 118 PRO 118 920 920 PRO PRO A . n A 1 119 ALA 119 921 921 ALA ALA A . n A 1 120 GLU 120 922 922 GLU GLU A . n A 1 121 MET 121 923 923 MET MET A . n B 1 1 LYS 1 803 803 LYS LYS B . n B 1 2 GLU 2 804 804 GLU GLU B . n B 1 3 ASN 3 805 805 ASN ASN B . n B 1 4 LYS 4 806 806 LYS LYS B . n B 1 5 LYS 5 807 807 LYS LYS B . n B 1 6 LEU 6 808 808 LEU LEU B . n B 1 7 LEU 7 809 809 LEU LEU B . n B 1 8 CYS 8 810 810 CYS CYS B . n B 1 9 ARG 9 811 811 ARG ARG B . n B 1 10 LYS 10 812 812 LYS LYS B . n B 1 11 CYS 11 813 813 CYS CYS B . n B 1 12 LYS 12 814 814 LYS LYS B . n B 1 13 ALA 13 815 815 ALA ALA B . n B 1 14 LEU 14 816 816 LEU LEU B . n B 1 15 ALA 15 817 817 ALA ALA B . n B 1 16 CYS 16 818 818 CYS CYS B . n B 1 17 TYR 17 819 819 TYR TYR B . n B 1 18 THR 18 820 820 THR THR B . n B 1 19 ALA 19 821 821 ALA ALA B . n B 1 20 ASP 20 822 822 ASP ASP B . n B 1 21 VAL 21 823 823 VAL VAL B . n B 1 22 ARG 22 824 824 ARG ARG B . n B 1 23 VAL 23 825 825 VAL VAL B . n B 1 24 ILE 24 826 826 ILE ILE B . n B 1 25 GLU 25 827 827 GLU GLU B . n B 1 26 GLU 26 828 828 GLU GLU B . n B 1 27 SER 27 829 829 SER SER B . n B 1 28 HIS 28 830 830 HIS HIS B . n B 1 29 TYR 29 831 831 TYR TYR B . n B 1 30 THR 30 832 832 THR THR B . n B 1 31 VAL 31 833 833 VAL VAL B . n B 1 32 LEU 32 834 834 LEU LEU B . n B 1 33 GLY 33 835 835 GLY GLY B . n B 1 34 ASP 34 836 836 ASP ASP B . n B 1 35 ALA 35 837 837 ALA ALA B . n B 1 36 PHE 36 838 838 PHE PHE B . n B 1 37 LYS 37 839 839 LYS LYS B . n B 1 38 GLU 38 840 840 GLU GLU B . n B 1 39 CYS 39 841 841 CYS CYS B . n B 1 40 PHE 40 842 842 PHE PHE B . n B 1 41 VAL 41 843 843 VAL VAL B . n B 1 42 SER 42 844 844 SER SER B . n B 1 43 ARG 43 845 845 ARG ARG B . n B 1 44 PRO 44 846 846 PRO PRO B . n B 1 45 HIS 45 847 847 HIS HIS B . n B 1 46 PRO 46 848 848 PRO PRO B . n B 1 47 LYS 47 849 849 LYS LYS B . n B 1 48 PRO 48 850 850 PRO PRO B . n B 1 49 LYS 49 851 851 LYS LYS B . n B 1 50 GLN 50 852 852 GLN GLN B . n B 1 51 PHE 51 853 853 PHE PHE B . n B 1 52 SER 52 854 854 SER SER B . n B 1 53 SER 53 855 855 SER SER B . n B 1 54 PHE 54 856 856 PHE PHE B . n B 1 55 GLU 55 857 857 GLU GLU B . n B 1 56 LYS 56 858 858 LYS LYS B . n B 1 57 ARG 57 859 859 ARG ARG B . n B 1 58 ALA 58 860 860 ALA ALA B . n B 1 59 LYS 59 861 861 LYS LYS B . n B 1 60 ILE 60 862 862 ILE ILE B . n B 1 61 PHE 61 863 863 PHE PHE B . n B 1 62 CYS 62 864 864 CYS CYS B . n B 1 63 ALA 63 865 865 ALA ALA B . n B 1 64 ARG 64 866 866 ARG ARG B . n B 1 65 GLN 65 867 867 GLN GLN B . n B 1 66 ASN 66 868 868 ASN ASN B . n B 1 67 CYS 67 869 869 CYS CYS B . n B 1 68 SER 68 870 870 SER SER B . n B 1 69 HIS 69 871 871 HIS HIS B . n B 1 70 ASP 70 872 872 ASP ASP B . n B 1 71 TRP 71 873 873 TRP TRP B . n B 1 72 GLY 72 874 874 GLY GLY B . n B 1 73 ILE 73 875 875 ILE ILE B . n B 1 74 HIS 74 876 876 HIS HIS B . n B 1 75 VAL 75 877 877 VAL VAL B . n B 1 76 LYS 76 878 878 LYS LYS B . n B 1 77 TYR 77 879 879 TYR TYR B . n B 1 78 LYS 78 880 880 LYS LYS B . n B 1 79 THR 79 881 881 THR THR B . n B 1 80 PHE 80 882 882 PHE PHE B . n B 1 81 GLU 81 883 883 GLU GLU B . n B 1 82 ILE 82 884 884 ILE ILE B . n B 1 83 PRO 83 885 885 PRO PRO B . n B 1 84 VAL 84 886 886 VAL VAL B . n B 1 85 ILE 85 887 887 ILE ILE B . n B 1 86 LYS 86 888 888 LYS LYS B . n B 1 87 ILE 87 889 889 ILE ILE B . n B 1 88 GLU 88 890 890 GLU GLU B . n B 1 89 SER 89 891 891 SER SER B . n B 1 90 PHE 90 892 892 PHE PHE B . n B 1 91 VAL 91 893 893 VAL VAL B . n B 1 92 VAL 92 894 894 VAL VAL B . n B 1 93 GLU 93 895 895 GLU GLU B . n B 1 94 ASP 94 896 896 ASP ASP B . n B 1 95 ILE 95 897 897 ILE ILE B . n B 1 96 ALA 96 898 898 ALA ALA B . n B 1 97 THR 97 899 899 THR THR B . n B 1 98 GLY 98 900 900 GLY GLY B . n B 1 99 VAL 99 901 901 VAL VAL B . n B 1 100 GLN 100 902 902 GLN GLN B . n B 1 101 THR 101 903 903 THR THR B . n B 1 102 LEU 102 904 904 LEU LEU B . n B 1 103 TYR 103 905 905 TYR TYR B . n B 1 104 SER 104 906 906 SER SER B . n B 1 105 LYS 105 907 907 LYS LYS B . n B 1 106 TRP 106 908 908 TRP TRP B . n B 1 107 LYS 107 909 909 LYS LYS B . n B 1 108 ASP 108 910 910 ASP ASP B . n B 1 109 PHE 109 911 911 PHE PHE B . n B 1 110 HIS 110 912 912 HIS HIS B . n B 1 111 PHE 111 913 913 PHE PHE B . n B 1 112 GLU 112 914 914 GLU GLU B . n B 1 113 LYS 113 915 915 LYS LYS B . n B 1 114 ILE 114 916 916 ILE ILE B . n B 1 115 PRO 115 917 917 PRO PRO B . n B 1 116 PHE 116 918 918 PHE PHE B . n B 1 117 ASP 117 919 919 ASP ASP B . n B 1 118 PRO 118 920 920 PRO PRO B . n B 1 119 ALA 119 921 921 ALA ALA B . n B 1 120 GLU 120 922 922 GLU GLU B . n B 1 121 MET 121 923 923 MET MET B . n C 2 1 ATP 1 1 1 ATP ATP C . n C 2 2 U 2 2 2 U U C . n C 2 3 A 3 3 3 A A C . n C 2 4 U 4 4 4 U U C . n C 2 5 A 5 5 5 A A C . n C 2 6 U 6 6 6 U U C . n C 2 7 A 7 7 7 A A C . n C 2 8 U 8 8 8 U U C . n C 2 9 A 9 9 9 A A C . n C 2 10 U 10 10 10 U U C . n C 2 11 A 11 11 11 A A C . n C 2 12 U 12 12 12 U U C . n D 2 1 ATP 1 1 1 ATP ATP D . n D 2 2 U 2 2 2 U U D . n D 2 3 A 3 3 3 A A D . n D 2 4 U 4 4 4 U U D . n D 2 5 A 5 5 5 A A D . n D 2 6 U 6 6 6 U U D . n D 2 7 A 7 7 7 A A D . n D 2 8 U 8 8 8 U U D . n D 2 9 A 9 9 9 A A D . n D 2 10 U 10 10 10 U U D . n D 2 11 A 11 11 11 A A D . n D 2 12 U 12 12 12 U U D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN 1 1 1 ZN ZN A . F 3 ZN 1 2 2 ZN ZN B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 11 ? A CYS 813 ? 1_555 108.7 ? 2 SG ? A CYS 8 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 62 ? A CYS 864 ? 1_555 114.5 ? 3 SG ? A CYS 11 ? A CYS 813 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 62 ? A CYS 864 ? 1_555 110.3 ? 4 SG ? A CYS 8 ? A CYS 810 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 67 ? A CYS 869 ? 1_555 97.6 ? 5 SG ? A CYS 11 ? A CYS 813 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 67 ? A CYS 869 ? 1_555 115.5 ? 6 SG ? A CYS 62 ? A CYS 864 ? 1_555 ZN ? E ZN . ? A ZN 1 ? 1_555 SG ? A CYS 67 ? A CYS 869 ? 1_555 109.8 ? 7 SG ? B CYS 8 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 11 ? B CYS 813 ? 1_555 112.3 ? 8 SG ? B CYS 8 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 62 ? B CYS 864 ? 1_555 108.6 ? 9 SG ? B CYS 11 ? B CYS 813 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 62 ? B CYS 864 ? 1_555 108.7 ? 10 SG ? B CYS 8 ? B CYS 810 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 67 ? B CYS 869 ? 1_555 102.0 ? 11 SG ? B CYS 11 ? B CYS 813 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 67 ? B CYS 869 ? 1_555 113.6 ? 12 SG ? B CYS 62 ? B CYS 864 ? 1_555 ZN ? F ZN . ? B ZN 2 ? 1_555 SG ? B CYS 67 ? B CYS 869 ? 1_555 111.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-13 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_conn_angle 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.value' 8 3 'Structure model' '_struct_conn.pdbx_dist_value' 9 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 10 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 17 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 3 'Structure model' '_struct_ref_seq_dif.details' 24 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 847 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O2B _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 ATP _pdbx_validate_close_contact.auth_seq_id_2 1 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C ATP 1 ? ? "O3'" C ATP 1 ? ? P C U 2 ? ? 106.58 119.70 -13.12 1.20 Y 2 1 "C3'" D ATP 1 ? ? "O3'" D ATP 1 ? ? P D U 2 ? ? 104.78 119.70 -14.92 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 818 ? ? -179.37 -171.10 2 1 GLU A 828 ? ? 58.73 -1.80 3 1 SER A 854 ? ? 36.29 -116.67 4 1 LYS A 858 ? ? -52.77 104.09 5 1 GLN A 867 ? ? -25.52 -91.38 6 1 CYS A 869 ? ? -99.81 -76.53 7 1 LYS A 880 ? ? 17.55 -101.53 8 1 CYS B 818 ? ? -167.49 -168.47 9 1 GLU B 827 ? ? 46.03 27.64 10 1 SER B 829 ? ? -151.25 5.18 11 1 LYS B 849 ? ? -117.55 69.00 12 1 PHE B 853 ? ? -122.23 -151.69 13 1 GLN B 867 ? ? 0.22 -67.59 14 1 LYS B 880 ? ? 55.72 -124.09 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 ATP PG P N N 111 ATP O1G O N N 112 ATP O2G O N N 113 ATP O3G O N N 114 ATP PB P N R 115 ATP O1B O N N 116 ATP O2B O N N 117 ATP O3B O N N 118 ATP PA P N R 119 ATP O1A O N N 120 ATP O2A O N N 121 ATP O3A O N N 122 ATP "O5'" O N N 123 ATP "C5'" C N N 124 ATP "C4'" C N R 125 ATP "O4'" O N N 126 ATP "C3'" C N S 127 ATP "O3'" O N N 128 ATP "C2'" C N R 129 ATP "O2'" O N N 130 ATP "C1'" C N R 131 ATP N9 N Y N 132 ATP C8 C Y N 133 ATP N7 N Y N 134 ATP C5 C Y N 135 ATP C6 C Y N 136 ATP N6 N N N 137 ATP N1 N Y N 138 ATP C2 C Y N 139 ATP N3 N Y N 140 ATP C4 C Y N 141 ATP HOG2 H N N 142 ATP HOG3 H N N 143 ATP HOB2 H N N 144 ATP HOA2 H N N 145 ATP "H5'1" H N N 146 ATP "H5'2" H N N 147 ATP "H4'" H N N 148 ATP "H3'" H N N 149 ATP "HO3'" H N N 150 ATP "H2'" H N N 151 ATP "HO2'" H N N 152 ATP "H1'" H N N 153 ATP H8 H N N 154 ATP HN61 H N N 155 ATP HN62 H N N 156 ATP H2 H N N 157 CYS N N N N 158 CYS CA C N R 159 CYS C C N N 160 CYS O O N N 161 CYS CB C N N 162 CYS SG S N N 163 CYS OXT O N N 164 CYS H H N N 165 CYS H2 H N N 166 CYS HA H N N 167 CYS HB2 H N N 168 CYS HB3 H N N 169 CYS HG H N N 170 CYS HXT H N N 171 GLN N N N N 172 GLN CA C N S 173 GLN C C N N 174 GLN O O N N 175 GLN CB C N N 176 GLN CG C N N 177 GLN CD C N N 178 GLN OE1 O N N 179 GLN NE2 N N N 180 GLN OXT O N N 181 GLN H H N N 182 GLN H2 H N N 183 GLN HA H N N 184 GLN HB2 H N N 185 GLN HB3 H N N 186 GLN HG2 H N N 187 GLN HG3 H N N 188 GLN HE21 H N N 189 GLN HE22 H N N 190 GLN HXT H N N 191 GLU N N N N 192 GLU CA C N S 193 GLU C C N N 194 GLU O O N N 195 GLU CB C N N 196 GLU CG C N N 197 GLU CD C N N 198 GLU OE1 O N N 199 GLU OE2 O N N 200 GLU OXT O N N 201 GLU H H N N 202 GLU H2 H N N 203 GLU HA H N N 204 GLU HB2 H N N 205 GLU HB3 H N N 206 GLU HG2 H N N 207 GLU HG3 H N N 208 GLU HE2 H N N 209 GLU HXT H N N 210 GLY N N N N 211 GLY CA C N N 212 GLY C C N N 213 GLY O O N N 214 GLY OXT O N N 215 GLY H H N N 216 GLY H2 H N N 217 GLY HA2 H N N 218 GLY HA3 H N N 219 GLY HXT H N N 220 HIS N N N N 221 HIS CA C N S 222 HIS C C N N 223 HIS O O N N 224 HIS CB C N N 225 HIS CG C Y N 226 HIS ND1 N Y N 227 HIS CD2 C Y N 228 HIS CE1 C Y N 229 HIS NE2 N Y N 230 HIS OXT O N N 231 HIS H H N N 232 HIS H2 H N N 233 HIS HA H N N 234 HIS HB2 H N N 235 HIS HB3 H N N 236 HIS HD1 H N N 237 HIS HD2 H N N 238 HIS HE1 H N N 239 HIS HE2 H N N 240 HIS HXT H N N 241 ILE N N N N 242 ILE CA C N S 243 ILE C C N N 244 ILE O O N N 245 ILE CB C N S 246 ILE CG1 C N N 247 ILE CG2 C N N 248 ILE CD1 C N N 249 ILE OXT O N N 250 ILE H H N N 251 ILE H2 H N N 252 ILE HA H N N 253 ILE HB H N N 254 ILE HG12 H N N 255 ILE HG13 H N N 256 ILE HG21 H N N 257 ILE HG22 H N N 258 ILE HG23 H N N 259 ILE HD11 H N N 260 ILE HD12 H N N 261 ILE HD13 H N N 262 ILE HXT H N N 263 LEU N N N N 264 LEU CA C N S 265 LEU C C N N 266 LEU O O N N 267 LEU CB C N N 268 LEU CG C N N 269 LEU CD1 C N N 270 LEU CD2 C N N 271 LEU OXT O N N 272 LEU H H N N 273 LEU H2 H N N 274 LEU HA H N N 275 LEU HB2 H N N 276 LEU HB3 H N N 277 LEU HG H N N 278 LEU HD11 H N N 279 LEU HD12 H N N 280 LEU HD13 H N N 281 LEU HD21 H N N 282 LEU HD22 H N N 283 LEU HD23 H N N 284 LEU HXT H N N 285 LYS N N N N 286 LYS CA C N S 287 LYS C C N N 288 LYS O O N N 289 LYS CB C N N 290 LYS CG C N N 291 LYS CD C N N 292 LYS CE C N N 293 LYS NZ N N N 294 LYS OXT O N N 295 LYS H H N N 296 LYS H2 H N N 297 LYS HA H N N 298 LYS HB2 H N N 299 LYS HB3 H N N 300 LYS HG2 H N N 301 LYS HG3 H N N 302 LYS HD2 H N N 303 LYS HD3 H N N 304 LYS HE2 H N N 305 LYS HE3 H N N 306 LYS HZ1 H N N 307 LYS HZ2 H N N 308 LYS HZ3 H N N 309 LYS HXT H N N 310 MET N N N N 311 MET CA C N S 312 MET C C N N 313 MET O O N N 314 MET CB C N N 315 MET CG C N N 316 MET SD S N N 317 MET CE C N N 318 MET OXT O N N 319 MET H H N N 320 MET H2 H N N 321 MET HA H N N 322 MET HB2 H N N 323 MET HB3 H N N 324 MET HG2 H N N 325 MET HG3 H N N 326 MET HE1 H N N 327 MET HE2 H N N 328 MET HE3 H N N 329 MET HXT H N N 330 PHE N N N N 331 PHE CA C N S 332 PHE C C N N 333 PHE O O N N 334 PHE CB C N N 335 PHE CG C Y N 336 PHE CD1 C Y N 337 PHE CD2 C Y N 338 PHE CE1 C Y N 339 PHE CE2 C Y N 340 PHE CZ C Y N 341 PHE OXT O N N 342 PHE H H N N 343 PHE H2 H N N 344 PHE HA H N N 345 PHE HB2 H N N 346 PHE HB3 H N N 347 PHE HD1 H N N 348 PHE HD2 H N N 349 PHE HE1 H N N 350 PHE HE2 H N N 351 PHE HZ H N N 352 PHE HXT H N N 353 PRO N N N N 354 PRO CA C N S 355 PRO C C N N 356 PRO O O N N 357 PRO CB C N N 358 PRO CG C N N 359 PRO CD C N N 360 PRO OXT O N N 361 PRO H H N N 362 PRO HA H N N 363 PRO HB2 H N N 364 PRO HB3 H N N 365 PRO HG2 H N N 366 PRO HG3 H N N 367 PRO HD2 H N N 368 PRO HD3 H N N 369 PRO HXT H N N 370 SER N N N N 371 SER CA C N S 372 SER C C N N 373 SER O O N N 374 SER CB C N N 375 SER OG O N N 376 SER OXT O N N 377 SER H H N N 378 SER H2 H N N 379 SER HA H N N 380 SER HB2 H N N 381 SER HB3 H N N 382 SER HG H N N 383 SER HXT H N N 384 THR N N N N 385 THR CA C N S 386 THR C C N N 387 THR O O N N 388 THR CB C N R 389 THR OG1 O N N 390 THR CG2 C N N 391 THR OXT O N N 392 THR H H N N 393 THR H2 H N N 394 THR HA H N N 395 THR HB H N N 396 THR HG1 H N N 397 THR HG21 H N N 398 THR HG22 H N N 399 THR HG23 H N N 400 THR HXT H N N 401 TRP N N N N 402 TRP CA C N S 403 TRP C C N N 404 TRP O O N N 405 TRP CB C N N 406 TRP CG C Y N 407 TRP CD1 C Y N 408 TRP CD2 C Y N 409 TRP NE1 N Y N 410 TRP CE2 C Y N 411 TRP CE3 C Y N 412 TRP CZ2 C Y N 413 TRP CZ3 C Y N 414 TRP CH2 C Y N 415 TRP OXT O N N 416 TRP H H N N 417 TRP H2 H N N 418 TRP HA H N N 419 TRP HB2 H N N 420 TRP HB3 H N N 421 TRP HD1 H N N 422 TRP HE1 H N N 423 TRP HE3 H N N 424 TRP HZ2 H N N 425 TRP HZ3 H N N 426 TRP HH2 H N N 427 TRP HXT H N N 428 TYR N N N N 429 TYR CA C N S 430 TYR C C N N 431 TYR O O N N 432 TYR CB C N N 433 TYR CG C Y N 434 TYR CD1 C Y N 435 TYR CD2 C Y N 436 TYR CE1 C Y N 437 TYR CE2 C Y N 438 TYR CZ C Y N 439 TYR OH O N N 440 TYR OXT O N N 441 TYR H H N N 442 TYR H2 H N N 443 TYR HA H N N 444 TYR HB2 H N N 445 TYR HB3 H N N 446 TYR HD1 H N N 447 TYR HD2 H N N 448 TYR HE1 H N N 449 TYR HE2 H N N 450 TYR HH H N N 451 TYR HXT H N N 452 U OP3 O N N 453 U P P N N 454 U OP1 O N N 455 U OP2 O N N 456 U "O5'" O N N 457 U "C5'" C N N 458 U "C4'" C N R 459 U "O4'" O N N 460 U "C3'" C N S 461 U "O3'" O N N 462 U "C2'" C N R 463 U "O2'" O N N 464 U "C1'" C N R 465 U N1 N N N 466 U C2 C N N 467 U O2 O N N 468 U N3 N N N 469 U C4 C N N 470 U O4 O N N 471 U C5 C N N 472 U C6 C N N 473 U HOP3 H N N 474 U HOP2 H N N 475 U "H5'" H N N 476 U "H5''" H N N 477 U "H4'" H N N 478 U "H3'" H N N 479 U "HO3'" H N N 480 U "H2'" H N N 481 U "HO2'" H N N 482 U "H1'" H N N 483 U H3 H N N 484 U H5 H N N 485 U H6 H N N 486 VAL N N N N 487 VAL CA C N S 488 VAL C C N N 489 VAL O O N N 490 VAL CB C N N 491 VAL CG1 C N N 492 VAL CG2 C N N 493 VAL OXT O N N 494 VAL H H N N 495 VAL H2 H N N 496 VAL HA H N N 497 VAL HB H N N 498 VAL HG11 H N N 499 VAL HG12 H N N 500 VAL HG13 H N N 501 VAL HG21 H N N 502 VAL HG22 H N N 503 VAL HG23 H N N 504 VAL HXT H N N 505 ZN ZN ZN N N 506 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 ATP PG O1G doub N N 109 ATP PG O2G sing N N 110 ATP PG O3G sing N N 111 ATP PG O3B sing N N 112 ATP O2G HOG2 sing N N 113 ATP O3G HOG3 sing N N 114 ATP PB O1B doub N N 115 ATP PB O2B sing N N 116 ATP PB O3B sing N N 117 ATP PB O3A sing N N 118 ATP O2B HOB2 sing N N 119 ATP PA O1A doub N N 120 ATP PA O2A sing N N 121 ATP PA O3A sing N N 122 ATP PA "O5'" sing N N 123 ATP O2A HOA2 sing N N 124 ATP "O5'" "C5'" sing N N 125 ATP "C5'" "C4'" sing N N 126 ATP "C5'" "H5'1" sing N N 127 ATP "C5'" "H5'2" sing N N 128 ATP "C4'" "O4'" sing N N 129 ATP "C4'" "C3'" sing N N 130 ATP "C4'" "H4'" sing N N 131 ATP "O4'" "C1'" sing N N 132 ATP "C3'" "O3'" sing N N 133 ATP "C3'" "C2'" sing N N 134 ATP "C3'" "H3'" sing N N 135 ATP "O3'" "HO3'" sing N N 136 ATP "C2'" "O2'" sing N N 137 ATP "C2'" "C1'" sing N N 138 ATP "C2'" "H2'" sing N N 139 ATP "O2'" "HO2'" sing N N 140 ATP "C1'" N9 sing N N 141 ATP "C1'" "H1'" sing N N 142 ATP N9 C8 sing Y N 143 ATP N9 C4 sing Y N 144 ATP C8 N7 doub Y N 145 ATP C8 H8 sing N N 146 ATP N7 C5 sing Y N 147 ATP C5 C6 sing Y N 148 ATP C5 C4 doub Y N 149 ATP C6 N6 sing N N 150 ATP C6 N1 doub Y N 151 ATP N6 HN61 sing N N 152 ATP N6 HN62 sing N N 153 ATP N1 C2 sing Y N 154 ATP C2 N3 doub Y N 155 ATP C2 H2 sing N N 156 ATP N3 C4 sing Y N 157 CYS N CA sing N N 158 CYS N H sing N N 159 CYS N H2 sing N N 160 CYS CA C sing N N 161 CYS CA CB sing N N 162 CYS CA HA sing N N 163 CYS C O doub N N 164 CYS C OXT sing N N 165 CYS CB SG sing N N 166 CYS CB HB2 sing N N 167 CYS CB HB3 sing N N 168 CYS SG HG sing N N 169 CYS OXT HXT sing N N 170 GLN N CA sing N N 171 GLN N H sing N N 172 GLN N H2 sing N N 173 GLN CA C sing N N 174 GLN CA CB sing N N 175 GLN CA HA sing N N 176 GLN C O doub N N 177 GLN C OXT sing N N 178 GLN CB CG sing N N 179 GLN CB HB2 sing N N 180 GLN CB HB3 sing N N 181 GLN CG CD sing N N 182 GLN CG HG2 sing N N 183 GLN CG HG3 sing N N 184 GLN CD OE1 doub N N 185 GLN CD NE2 sing N N 186 GLN NE2 HE21 sing N N 187 GLN NE2 HE22 sing N N 188 GLN OXT HXT sing N N 189 GLU N CA sing N N 190 GLU N H sing N N 191 GLU N H2 sing N N 192 GLU CA C sing N N 193 GLU CA CB sing N N 194 GLU CA HA sing N N 195 GLU C O doub N N 196 GLU C OXT sing N N 197 GLU CB CG sing N N 198 GLU CB HB2 sing N N 199 GLU CB HB3 sing N N 200 GLU CG CD sing N N 201 GLU CG HG2 sing N N 202 GLU CG HG3 sing N N 203 GLU CD OE1 doub N N 204 GLU CD OE2 sing N N 205 GLU OE2 HE2 sing N N 206 GLU OXT HXT sing N N 207 GLY N CA sing N N 208 GLY N H sing N N 209 GLY N H2 sing N N 210 GLY CA C sing N N 211 GLY CA HA2 sing N N 212 GLY CA HA3 sing N N 213 GLY C O doub N N 214 GLY C OXT sing N N 215 GLY OXT HXT sing N N 216 HIS N CA sing N N 217 HIS N H sing N N 218 HIS N H2 sing N N 219 HIS CA C sing N N 220 HIS CA CB sing N N 221 HIS CA HA sing N N 222 HIS C O doub N N 223 HIS C OXT sing N N 224 HIS CB CG sing N N 225 HIS CB HB2 sing N N 226 HIS CB HB3 sing N N 227 HIS CG ND1 sing Y N 228 HIS CG CD2 doub Y N 229 HIS ND1 CE1 doub Y N 230 HIS ND1 HD1 sing N N 231 HIS CD2 NE2 sing Y N 232 HIS CD2 HD2 sing N N 233 HIS CE1 NE2 sing Y N 234 HIS CE1 HE1 sing N N 235 HIS NE2 HE2 sing N N 236 HIS OXT HXT sing N N 237 ILE N CA sing N N 238 ILE N H sing N N 239 ILE N H2 sing N N 240 ILE CA C sing N N 241 ILE CA CB sing N N 242 ILE CA HA sing N N 243 ILE C O doub N N 244 ILE C OXT sing N N 245 ILE CB CG1 sing N N 246 ILE CB CG2 sing N N 247 ILE CB HB sing N N 248 ILE CG1 CD1 sing N N 249 ILE CG1 HG12 sing N N 250 ILE CG1 HG13 sing N N 251 ILE CG2 HG21 sing N N 252 ILE CG2 HG22 sing N N 253 ILE CG2 HG23 sing N N 254 ILE CD1 HD11 sing N N 255 ILE CD1 HD12 sing N N 256 ILE CD1 HD13 sing N N 257 ILE OXT HXT sing N N 258 LEU N CA sing N N 259 LEU N H sing N N 260 LEU N H2 sing N N 261 LEU CA C sing N N 262 LEU CA CB sing N N 263 LEU CA HA sing N N 264 LEU C O doub N N 265 LEU C OXT sing N N 266 LEU CB CG sing N N 267 LEU CB HB2 sing N N 268 LEU CB HB3 sing N N 269 LEU CG CD1 sing N N 270 LEU CG CD2 sing N N 271 LEU CG HG sing N N 272 LEU CD1 HD11 sing N N 273 LEU CD1 HD12 sing N N 274 LEU CD1 HD13 sing N N 275 LEU CD2 HD21 sing N N 276 LEU CD2 HD22 sing N N 277 LEU CD2 HD23 sing N N 278 LEU OXT HXT sing N N 279 LYS N CA sing N N 280 LYS N H sing N N 281 LYS N H2 sing N N 282 LYS CA C sing N N 283 LYS CA CB sing N N 284 LYS CA HA sing N N 285 LYS C O doub N N 286 LYS C OXT sing N N 287 LYS CB CG sing N N 288 LYS CB HB2 sing N N 289 LYS CB HB3 sing N N 290 LYS CG CD sing N N 291 LYS CG HG2 sing N N 292 LYS CG HG3 sing N N 293 LYS CD CE sing N N 294 LYS CD HD2 sing N N 295 LYS CD HD3 sing N N 296 LYS CE NZ sing N N 297 LYS CE HE2 sing N N 298 LYS CE HE3 sing N N 299 LYS NZ HZ1 sing N N 300 LYS NZ HZ2 sing N N 301 LYS NZ HZ3 sing N N 302 LYS OXT HXT sing N N 303 MET N CA sing N N 304 MET N H sing N N 305 MET N H2 sing N N 306 MET CA C sing N N 307 MET CA CB sing N N 308 MET CA HA sing N N 309 MET C O doub N N 310 MET C OXT sing N N 311 MET CB CG sing N N 312 MET CB HB2 sing N N 313 MET CB HB3 sing N N 314 MET CG SD sing N N 315 MET CG HG2 sing N N 316 MET CG HG3 sing N N 317 MET SD CE sing N N 318 MET CE HE1 sing N N 319 MET CE HE2 sing N N 320 MET CE HE3 sing N N 321 MET OXT HXT sing N N 322 PHE N CA sing N N 323 PHE N H sing N N 324 PHE N H2 sing N N 325 PHE CA C sing N N 326 PHE CA CB sing N N 327 PHE CA HA sing N N 328 PHE C O doub N N 329 PHE C OXT sing N N 330 PHE CB CG sing N N 331 PHE CB HB2 sing N N 332 PHE CB HB3 sing N N 333 PHE CG CD1 doub Y N 334 PHE CG CD2 sing Y N 335 PHE CD1 CE1 sing Y N 336 PHE CD1 HD1 sing N N 337 PHE CD2 CE2 doub Y N 338 PHE CD2 HD2 sing N N 339 PHE CE1 CZ doub Y N 340 PHE CE1 HE1 sing N N 341 PHE CE2 CZ sing Y N 342 PHE CE2 HE2 sing N N 343 PHE CZ HZ sing N N 344 PHE OXT HXT sing N N 345 PRO N CA sing N N 346 PRO N CD sing N N 347 PRO N H sing N N 348 PRO CA C sing N N 349 PRO CA CB sing N N 350 PRO CA HA sing N N 351 PRO C O doub N N 352 PRO C OXT sing N N 353 PRO CB CG sing N N 354 PRO CB HB2 sing N N 355 PRO CB HB3 sing N N 356 PRO CG CD sing N N 357 PRO CG HG2 sing N N 358 PRO CG HG3 sing N N 359 PRO CD HD2 sing N N 360 PRO CD HD3 sing N N 361 PRO OXT HXT sing N N 362 SER N CA sing N N 363 SER N H sing N N 364 SER N H2 sing N N 365 SER CA C sing N N 366 SER CA CB sing N N 367 SER CA HA sing N N 368 SER C O doub N N 369 SER C OXT sing N N 370 SER CB OG sing N N 371 SER CB HB2 sing N N 372 SER CB HB3 sing N N 373 SER OG HG sing N N 374 SER OXT HXT sing N N 375 THR N CA sing N N 376 THR N H sing N N 377 THR N H2 sing N N 378 THR CA C sing N N 379 THR CA CB sing N N 380 THR CA HA sing N N 381 THR C O doub N N 382 THR C OXT sing N N 383 THR CB OG1 sing N N 384 THR CB CG2 sing N N 385 THR CB HB sing N N 386 THR OG1 HG1 sing N N 387 THR CG2 HG21 sing N N 388 THR CG2 HG22 sing N N 389 THR CG2 HG23 sing N N 390 THR OXT HXT sing N N 391 TRP N CA sing N N 392 TRP N H sing N N 393 TRP N H2 sing N N 394 TRP CA C sing N N 395 TRP CA CB sing N N 396 TRP CA HA sing N N 397 TRP C O doub N N 398 TRP C OXT sing N N 399 TRP CB CG sing N N 400 TRP CB HB2 sing N N 401 TRP CB HB3 sing N N 402 TRP CG CD1 doub Y N 403 TRP CG CD2 sing Y N 404 TRP CD1 NE1 sing Y N 405 TRP CD1 HD1 sing N N 406 TRP CD2 CE2 doub Y N 407 TRP CD2 CE3 sing Y N 408 TRP NE1 CE2 sing Y N 409 TRP NE1 HE1 sing N N 410 TRP CE2 CZ2 sing Y N 411 TRP CE3 CZ3 doub Y N 412 TRP CE3 HE3 sing N N 413 TRP CZ2 CH2 doub Y N 414 TRP CZ2 HZ2 sing N N 415 TRP CZ3 CH2 sing Y N 416 TRP CZ3 HZ3 sing N N 417 TRP CH2 HH2 sing N N 418 TRP OXT HXT sing N N 419 TYR N CA sing N N 420 TYR N H sing N N 421 TYR N H2 sing N N 422 TYR CA C sing N N 423 TYR CA CB sing N N 424 TYR CA HA sing N N 425 TYR C O doub N N 426 TYR C OXT sing N N 427 TYR CB CG sing N N 428 TYR CB HB2 sing N N 429 TYR CB HB3 sing N N 430 TYR CG CD1 doub Y N 431 TYR CG CD2 sing Y N 432 TYR CD1 CE1 sing Y N 433 TYR CD1 HD1 sing N N 434 TYR CD2 CE2 doub Y N 435 TYR CD2 HD2 sing N N 436 TYR CE1 CZ doub Y N 437 TYR CE1 HE1 sing N N 438 TYR CE2 CZ sing Y N 439 TYR CE2 HE2 sing N N 440 TYR CZ OH sing N N 441 TYR OH HH sing N N 442 TYR OXT HXT sing N N 443 U OP3 P sing N N 444 U OP3 HOP3 sing N N 445 U P OP1 doub N N 446 U P OP2 sing N N 447 U P "O5'" sing N N 448 U OP2 HOP2 sing N N 449 U "O5'" "C5'" sing N N 450 U "C5'" "C4'" sing N N 451 U "C5'" "H5'" sing N N 452 U "C5'" "H5''" sing N N 453 U "C4'" "O4'" sing N N 454 U "C4'" "C3'" sing N N 455 U "C4'" "H4'" sing N N 456 U "O4'" "C1'" sing N N 457 U "C3'" "O3'" sing N N 458 U "C3'" "C2'" sing N N 459 U "C3'" "H3'" sing N N 460 U "O3'" "HO3'" sing N N 461 U "C2'" "O2'" sing N N 462 U "C2'" "C1'" sing N N 463 U "C2'" "H2'" sing N N 464 U "O2'" "HO2'" sing N N 465 U "C1'" N1 sing N N 466 U "C1'" "H1'" sing N N 467 U N1 C2 sing N N 468 U N1 C6 sing N N 469 U C2 O2 doub N N 470 U C2 N3 sing N N 471 U N3 C4 sing N N 472 U N3 H3 sing N N 473 U C4 O4 doub N N 474 U C4 C5 sing N N 475 U C5 C6 doub N N 476 U C5 H5 sing N N 477 U C6 H6 sing N N 478 VAL N CA sing N N 479 VAL N H sing N N 480 VAL N H2 sing N N 481 VAL CA C sing N N 482 VAL CA CB sing N N 483 VAL CA HA sing N N 484 VAL C O doub N N 485 VAL C OXT sing N N 486 VAL CB CG1 sing N N 487 VAL CB CG2 sing N N 488 VAL CB HB sing N N 489 VAL CG1 HG11 sing N N 490 VAL CG1 HG12 sing N N 491 VAL CG1 HG13 sing N N 492 VAL CG2 HG21 sing N N 493 VAL CG2 HG22 sing N N 494 VAL CG2 HG23 sing N N 495 VAL OXT HXT sing N N 496 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3LRR 'double helix' 3LRR 'a-form double helix' 3LRR 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C ATP 1 1_555 D U 12 1_555 0.209 0.196 -0.072 -8.632 -9.560 6.729 1 C_ATP1:U12_D C 1 ? D 12 ? 20 1 1 C U 2 1_555 D A 11 1_555 -0.638 -0.067 0.824 1.949 -15.977 12.827 2 C_U2:A11_D C 2 ? D 11 ? ? 1 1 C A 3 1_555 D U 10 1_555 0.503 -0.024 0.634 11.205 -20.913 7.257 3 C_A3:U10_D C 3 ? D 10 ? 20 1 1 C U 4 1_555 D A 9 1_555 0.402 0.100 -0.027 6.318 -14.339 6.623 4 C_U4:A9_D C 4 ? D 9 ? 20 1 1 C A 5 1_555 D U 8 1_555 1.007 0.308 -0.137 -12.991 -10.388 4.122 5 C_A5:U8_D C 5 ? D 8 ? ? ? 1 C U 6 1_555 D A 7 1_555 -0.001 -0.072 -0.350 10.360 -17.241 6.945 6 C_U6:A7_D C 6 ? D 7 ? 20 1 1 C A 7 1_555 D U 6 1_555 0.133 -0.154 -0.255 -3.014 -7.046 -0.215 7 C_A7:U6_D C 7 ? D 6 ? 20 1 1 C A 9 1_555 D U 4 1_555 0.908 0.426 0.193 -6.883 -7.824 5.782 8 C_A9:U4_D C 9 ? D 4 ? ? ? 1 C U 10 1_555 D A 3 1_555 0.597 -0.059 0.578 -12.540 -1.523 1.858 9 C_U10:A3_D C 10 ? D 3 ? 20 1 1 C A 11 1_555 D U 2 1_555 -0.360 -0.096 0.691 -2.825 -13.980 11.722 10 C_A11:U2_D C 11 ? D 2 ? 20 1 1 C U 12 1_555 D ATP 1 1_555 -0.112 0.494 -0.353 15.057 -2.853 2.171 11 C_U12:ATP1_D C 12 ? D 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C ATP 1 1_555 D U 12 1_555 C U 2 1_555 D A 11 1_555 0.435 -0.870 2.861 -5.192 6.816 33.661 -2.336 -1.399 2.549 11.540 8.789 34.703 1 CC_ATP1U2:A11U12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 C U 2 1_555 D A 11 1_555 C A 3 1_555 D U 10 1_555 0.672 -1.786 2.638 4.287 9.272 31.254 -4.342 -0.642 2.108 16.662 -7.704 32.841 2 CC_U2A3:U10A11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C A 3 1_555 D U 10 1_555 C U 4 1_555 D A 9 1_555 0.389 -1.228 3.389 7.438 -3.934 37.903 -1.336 0.383 3.506 -5.967 -11.281 38.792 3 CC_A3U4:A9U10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C U 4 1_555 D A 9 1_555 C A 5 1_555 D U 8 1_555 0.495 -1.514 3.663 6.389 14.844 34.406 -4.321 0.094 2.841 23.553 -10.138 37.908 4 CC_U4A5:U8A9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 C A 5 1_555 D U 8 1_555 C U 6 1_555 D A 7 1_555 0.141 -1.130 2.698 3.566 5.106 28.037 -3.195 0.355 2.457 10.378 -7.248 28.707 5 CC_A5U6:A7U8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C U 6 1_555 D A 7 1_555 C A 7 1_555 D U 6 1_555 -0.346 -1.807 3.598 -3.772 10.780 29.749 -5.295 -0.069 2.811 20.089 7.029 31.820 6 CC_U6A7:U6A7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C A 7 1_555 D U 6 1_555 C A 9 1_555 D U 4 1_555 -0.506 -2.595 6.443 -8.374 7.969 67.601 -2.884 -0.158 6.160 7.109 7.471 68.466 7 CC_A7A9:U4U6_DD C 7 ? D 6 ? C 9 ? D 4 ? 1 C A 9 1_555 D U 4 1_555 C U 10 1_555 D A 3 1_555 -0.985 -2.076 3.405 -5.706 0.621 28.986 -4.212 0.643 3.486 1.225 11.261 29.537 8 CC_A9U10:A3U4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 C U 10 1_555 D A 3 1_555 C A 11 1_555 D U 2 1_555 0.070 -1.912 2.737 -2.437 9.282 28.116 -5.190 -0.520 2.004 18.438 4.841 29.677 9 CC_U10A11:U2A3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 C A 11 1_555 D U 2 1_555 C U 12 1_555 D ATP 1 1_555 -0.534 -0.871 2.874 6.379 3.796 36.581 -1.790 1.555 2.646 5.973 -10.036 37.301 10 CC_A11U12:ATP1U2_DD C 11 ? D 2 ? C 12 ? D 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2QFB _pdbx_initial_refinement_model.details 'Free RIG-I CTD, pdb ID. 2QFB chain A' #