data_3MKO # _entry.id 3MKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3MKO RCSB RCSB058664 WWPDB D_1000058664 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3MKO _pdbx_database_status.recvd_initial_deposition_date 2010-04-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Igonet, S.' 1 'Vaney, M.C.' 2 'Rey, F.A.' 3 # _citation.id primary _citation.title 'X-ray structure of the arenavirus glycoprotein GP2 in its postfusion hairpin conformation' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 19967 _citation.page_last 19972 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22123988 _citation.pdbx_database_id_DOI 10.1073/pnas.1108910108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Igonet, S.' 1 primary 'Vaney, M.C.' 2 primary 'Vonhrein, C.' 3 primary 'Bricogne, G.' 4 primary 'Stura, E.A.' 5 primary 'Hengartner, H.' 6 primary 'Eschli, B.' 7 primary 'Rey, F.A.' 8 # _cell.entry_id 3MKO _cell.length_a 52.925 _cell.length_b 52.925 _cell.length_c 191.330 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3MKO _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glycoprotein C' 16121.222 1 ? C316S Ectodomain ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 3 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'URANYL (VI) ION' 270.028 1 ? ? ? ? 5 water nat water 18.015 91 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Arenavirus Glycoprotein 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HHHHHHIEGRDEEFSDMLRLIDYNKAALSKFKQDVESALHVFKTTVNSLISDQLLMRNHLRDLMGVPYCNYSKFWYLEHA KTGETSVPKCWLVTNGSYLNETHFSDQIEQEADNMITEMLRKDYIKRQGSTPLALMD ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHIEGRDEEFSDMLRLIDYNKAALSKFKQDVESALHVFKTTVNSLISDQLLMRNHLRDLMGVPYCNYSKFWYLEHA KTGETSVPKCWLVTNGSYLNETHFSDQIEQEADNMITEMLRKDYIKRQGSTPLALMD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 ILE n 1 8 GLU n 1 9 GLY n 1 10 ARG n 1 11 ASP n 1 12 GLU n 1 13 GLU n 1 14 PHE n 1 15 SER n 1 16 ASP n 1 17 MET n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 ILE n 1 22 ASP n 1 23 TYR n 1 24 ASN n 1 25 LYS n 1 26 ALA n 1 27 ALA n 1 28 LEU n 1 29 SER n 1 30 LYS n 1 31 PHE n 1 32 LYS n 1 33 GLN n 1 34 ASP n 1 35 VAL n 1 36 GLU n 1 37 SER n 1 38 ALA n 1 39 LEU n 1 40 HIS n 1 41 VAL n 1 42 PHE n 1 43 LYS n 1 44 THR n 1 45 THR n 1 46 VAL n 1 47 ASN n 1 48 SER n 1 49 LEU n 1 50 ILE n 1 51 SER n 1 52 ASP n 1 53 GLN n 1 54 LEU n 1 55 LEU n 1 56 MET n 1 57 ARG n 1 58 ASN n 1 59 HIS n 1 60 LEU n 1 61 ARG n 1 62 ASP n 1 63 LEU n 1 64 MET n 1 65 GLY n 1 66 VAL n 1 67 PRO n 1 68 TYR n 1 69 CYS n 1 70 ASN n 1 71 TYR n 1 72 SER n 1 73 LYS n 1 74 PHE n 1 75 TRP n 1 76 TYR n 1 77 LEU n 1 78 GLU n 1 79 HIS n 1 80 ALA n 1 81 LYS n 1 82 THR n 1 83 GLY n 1 84 GLU n 1 85 THR n 1 86 SER n 1 87 VAL n 1 88 PRO n 1 89 LYS n 1 90 CYS n 1 91 TRP n 1 92 LEU n 1 93 VAL n 1 94 THR n 1 95 ASN n 1 96 GLY n 1 97 SER n 1 98 TYR n 1 99 LEU n 1 100 ASN n 1 101 GLU n 1 102 THR n 1 103 HIS n 1 104 PHE n 1 105 SER n 1 106 ASP n 1 107 GLN n 1 108 ILE n 1 109 GLU n 1 110 GLN n 1 111 GLU n 1 112 ALA n 1 113 ASP n 1 114 ASN n 1 115 MET n 1 116 ILE n 1 117 THR n 1 118 GLU n 1 119 MET n 1 120 LEU n 1 121 ARG n 1 122 LYS n 1 123 ASP n 1 124 TYR n 1 125 ILE n 1 126 LYS n 1 127 ARG n 1 128 GLN n 1 129 GLY n 1 130 SER n 1 131 THR n 1 132 PRO n 1 133 LEU n 1 134 ALA n 1 135 LEU n 1 136 MET n 1 137 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lcmv-GP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain WE-HPI _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lymphocytic choriomeningitis virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11623 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta-gami (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-19b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9ICW1_9VIRU _struct_ref.pdbx_db_accession Q9ICW1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DEEFCDMLRLIDYNKAALSKFKQDVESALHVFKTTVNSLISDQLLMRNHLRDLMGVPYCNYSKFWYLEHAKTGETSVPKC WLVTNGSYLNETHFSDQIEQEADNMITEMLRKDYIKRQGSTPLALMD ; _struct_ref.pdbx_align_begin 312 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3MKO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 137 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ICW1 _struct_ref_seq.db_align_beg 312 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 438 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 312 _struct_ref_seq.pdbx_auth_seq_align_end 438 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3MKO HIS A 1 ? UNP Q9ICW1 ? ? 'EXPRESSION TAG' 302 1 1 3MKO HIS A 2 ? UNP Q9ICW1 ? ? 'EXPRESSION TAG' 303 2 1 3MKO HIS A 3 ? UNP Q9ICW1 ? ? 'EXPRESSION TAG' 304 3 1 3MKO HIS A 4 ? UNP Q9ICW1 ? ? 'EXPRESSION TAG' 305 4 1 3MKO HIS A 5 ? UNP Q9ICW1 ? ? 'EXPRESSION TAG' 306 5 1 3MKO HIS A 6 ? UNP Q9ICW1 ? ? 'EXPRESSION TAG' 307 6 1 3MKO ILE A 7 ? UNP Q9ICW1 ? ? 'SEE REMARK 999' 308 7 1 3MKO GLU A 8 ? UNP Q9ICW1 ? ? 'SEE REMARK 999' 309 8 1 3MKO GLY A 9 ? UNP Q9ICW1 ? ? 'SEE REMARK 999' 310 9 1 3MKO ARG A 10 ? UNP Q9ICW1 ? ? 'SEE REMARK 999' 311 10 1 3MKO SER A 15 ? UNP Q9ICW1 CYS 316 'ENGINEERED MUTATION' 316 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IUM non-polymer . 'URANYL (VI) ION' ? 'O2 U 2' 270.028 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3MKO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '15% MPD, 2% PEG 400, 100mM imidazole, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2008-08-02 _diffrn_detector.details 'Dynamically bendable mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'LN2 cooled fixed-exit Si(111) monochromator' _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.3354 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.3354 # _reflns.entry_id 3MKO _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 37.22 _reflns.d_resolution_high 1.8 _reflns.number_obs 13777 _reflns.number_all ? _reflns.percent_possible_obs 89.9 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI 26.9 _reflns.B_iso_Wilson_estimate 23.16 _reflns.pdbx_redundancy 13.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.94 _reflns_shell.percent_possible_all 88.2 _reflns_shell.Rmerge_I_obs 0.463 _reflns_shell.pdbx_Rsym_value 0.463 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1911 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3MKO _refine.ls_number_reflns_obs 13771 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.22 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 87.91 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1900 _refine.ls_R_factor_R_work 0.1883 _refine.ls_R_factor_R_free 0.2222 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.04 _refine.ls_number_reflns_R_free 694 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9454 _refine.correlation_coeff_Fo_to_Fc_free 0.9283 _refine.B_iso_mean 27.68 _refine.aniso_B[1][1] -0.2928 _refine.aniso_B[2][2] -0.2928 _refine.aniso_B[3][3] 0.5856 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;IDEAL-DIST CONTACT TERM CONTACT SETUP. RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=LG1 NA. NUMBER OF ATOMS WITH PROPER CCP4 ATOM TYPE=2314. NUMBER WITH APPROX DEFAULT CCP4 ATOM TYPE=37. NUMBER TREATED BY BAD NON-BONDED CONTACTS=6. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI 0.113 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.112 _refine.pdbx_overall_SU_R_Blow_DPI 0.125 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.120 _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_analyze.entry_id 3MKO _refine_analyze.Luzzati_coordinate_error_obs 0.186 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.125 _refine_analyze.Luzzati_sigma_a_free 0.120 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 854 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 973 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 37.22 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 929 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 0.99 ? 2.00 1259 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 328 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 26 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 129 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 929 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? 5.00 3 'X-RAY DIFFRACTION' SEMIHARMONIC t_omega_torsion 2.75 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 17.37 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 117 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1197 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.94 _refine_ls_shell.number_reflns_R_work 2608 _refine_ls_shell.R_factor_R_work 0.1940 _refine_ls_shell.percent_reflns_obs 87.91 _refine_ls_shell.R_factor_R_free 0.2160 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.71 _refine_ls_shell.number_reflns_R_free 158 _refine_ls_shell.number_reflns_all 2766 _refine_ls_shell.R_factor_all 0.1953 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3MKO _struct.title 'Crystal Structure of the Lymphocytic Choriomeningitis Virus Membrane Fusion Glycoprotein GP2 in its Postfusion Conformation' _struct.pdbx_descriptor 'Glycoprotein C' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3MKO _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'Trimeric coiled-coil, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 12 ? HIS A 59 ? GLU A 313 HIS A 360 1 ? 48 HELX_P HELX_P2 2 LEU A 60 ? MET A 64 ? LEU A 361 MET A 365 5 ? 5 HELX_P HELX_P3 3 SER A 72 ? ALA A 80 ? SER A 373 ALA A 381 1 ? 9 HELX_P HELX_P4 4 ASP A 106 ? LEU A 120 ? ASP A 407 LEU A 421 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 69 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 90 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 370 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 391 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.040 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 88 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 389 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 LYS _struct_mon_prot_cis.pdbx_label_seq_id_2 89 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 LYS _struct_mon_prot_cis.pdbx_auth_seq_id_2 390 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.24 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MPD A 92' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE MPD A 93' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MPD A 94' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 95' AC5 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE IUM A 96' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH G . ? HOH A 50 . ? 1_555 ? 2 AC1 4 ALA A 38 ? ALA A 339 . ? 2_565 ? 3 AC1 4 GLU A 101 ? GLU A 402 . ? 1_555 ? 4 AC1 4 THR A 102 ? THR A 403 . ? 1_555 ? 5 AC2 8 HOH G . ? HOH A 21 . ? 1_555 ? 6 AC2 8 SER A 48 ? SER A 349 . ? 2_565 ? 7 AC2 8 TYR A 71 ? TYR A 372 . ? 1_555 ? 8 AC2 8 SER A 72 ? SER A 373 . ? 1_555 ? 9 AC2 8 LYS A 73 ? LYS A 374 . ? 1_555 ? 10 AC2 8 TYR A 76 ? TYR A 377 . ? 1_555 ? 11 AC2 8 LEU A 92 ? LEU A 393 . ? 1_555 ? 12 AC2 8 SER A 97 ? SER A 398 . ? 1_555 ? 13 AC3 7 LEU A 18 ? LEU A 319 . ? 8_565 ? 14 AC3 7 LEU A 20 ? LEU A 321 . ? 9_455 ? 15 AC3 7 ASP A 22 ? ASP A 323 . ? 8_565 ? 16 AC3 7 ASN A 70 ? ASN A 371 . ? 1_555 ? 17 AC3 7 TYR A 71 ? TYR A 372 . ? 1_555 ? 18 AC3 7 SER A 72 ? SER A 373 . ? 1_555 ? 19 AC3 7 TRP A 75 ? TRP A 376 . ? 1_555 ? 20 AC4 3 ASN A 24 ? ASN A 325 . ? 1_555 ? 21 AC4 3 ASN A 24 ? ASN A 325 . ? 2_565 ? 22 AC4 3 ASN A 24 ? ASN A 325 . ? 3_455 ? 23 AC5 7 HOH G . ? HOH A 87 . ? 1_555 ? 24 AC5 7 HOH G . ? HOH A 87 . ? 3_455 ? 25 AC5 7 ARG A 61 ? ARG A 362 . ? 11_454 ? 26 AC5 7 ARG A 61 ? ARG A 362 . ? 3_455 ? 27 AC5 7 ARG A 61 ? ARG A 362 . ? 12_564 ? 28 AC5 7 ARG A 61 ? ARG A 362 . ? 1_555 ? 29 AC5 7 ARG A 61 ? ARG A 362 . ? 10_554 ? # _database_PDB_matrix.entry_id 3MKO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3MKO _atom_sites.fract_transf_matrix[1][1] 0.018895 _atom_sites.fract_transf_matrix[1][2] 0.010909 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021818 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005227 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S U # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 302 ? ? ? A . n A 1 2 HIS 2 303 ? ? ? A . n A 1 3 HIS 3 304 ? ? ? A . n A 1 4 HIS 4 305 ? ? ? A . n A 1 5 HIS 5 306 ? ? ? A . n A 1 6 HIS 6 307 ? ? ? A . n A 1 7 ILE 7 308 ? ? ? A . n A 1 8 GLU 8 309 ? ? ? A . n A 1 9 GLY 9 310 ? ? ? A . n A 1 10 ARG 10 311 ? ? ? A . n A 1 11 ASP 11 312 ? ? ? A . n A 1 12 GLU 12 313 313 GLU GLU A . n A 1 13 GLU 13 314 314 GLU GLU A . n A 1 14 PHE 14 315 315 PHE PHE A . n A 1 15 SER 15 316 316 SER SER A . n A 1 16 ASP 16 317 317 ASP ASP A . n A 1 17 MET 17 318 318 MET MET A . n A 1 18 LEU 18 319 319 LEU LEU A . n A 1 19 ARG 19 320 320 ARG ARG A . n A 1 20 LEU 20 321 321 LEU LEU A . n A 1 21 ILE 21 322 322 ILE ILE A . n A 1 22 ASP 22 323 323 ASP ASP A . n A 1 23 TYR 23 324 324 TYR TYR A . n A 1 24 ASN 24 325 325 ASN ASN A . n A 1 25 LYS 25 326 326 LYS LYS A . n A 1 26 ALA 26 327 327 ALA ALA A . n A 1 27 ALA 27 328 328 ALA ALA A . n A 1 28 LEU 28 329 329 LEU LEU A . n A 1 29 SER 29 330 330 SER SER A . n A 1 30 LYS 30 331 331 LYS LYS A . n A 1 31 PHE 31 332 332 PHE PHE A . n A 1 32 LYS 32 333 333 LYS LYS A . n A 1 33 GLN 33 334 334 GLN GLN A . n A 1 34 ASP 34 335 335 ASP ASP A . n A 1 35 VAL 35 336 336 VAL VAL A . n A 1 36 GLU 36 337 337 GLU GLU A . n A 1 37 SER 37 338 338 SER SER A . n A 1 38 ALA 38 339 339 ALA ALA A . n A 1 39 LEU 39 340 340 LEU LEU A . n A 1 40 HIS 40 341 341 HIS HIS A . n A 1 41 VAL 41 342 342 VAL VAL A . n A 1 42 PHE 42 343 343 PHE PHE A . n A 1 43 LYS 43 344 344 LYS LYS A . n A 1 44 THR 44 345 345 THR THR A . n A 1 45 THR 45 346 346 THR THR A . n A 1 46 VAL 46 347 347 VAL VAL A . n A 1 47 ASN 47 348 348 ASN ASN A . n A 1 48 SER 48 349 349 SER SER A . n A 1 49 LEU 49 350 350 LEU LEU A . n A 1 50 ILE 50 351 351 ILE ILE A . n A 1 51 SER 51 352 352 SER SER A . n A 1 52 ASP 52 353 353 ASP ASP A . n A 1 53 GLN 53 354 354 GLN GLN A . n A 1 54 LEU 54 355 355 LEU LEU A . n A 1 55 LEU 55 356 356 LEU LEU A . n A 1 56 MET 56 357 357 MET MET A . n A 1 57 ARG 57 358 358 ARG ARG A . n A 1 58 ASN 58 359 359 ASN ASN A . n A 1 59 HIS 59 360 360 HIS HIS A . n A 1 60 LEU 60 361 361 LEU LEU A . n A 1 61 ARG 61 362 362 ARG ARG A . n A 1 62 ASP 62 363 363 ASP ASP A . n A 1 63 LEU 63 364 364 LEU LEU A . n A 1 64 MET 64 365 365 MET MET A . n A 1 65 GLY 65 366 366 GLY GLY A . n A 1 66 VAL 66 367 367 VAL VAL A . n A 1 67 PRO 67 368 368 PRO PRO A . n A 1 68 TYR 68 369 369 TYR TYR A . n A 1 69 CYS 69 370 370 CYS CYS A . n A 1 70 ASN 70 371 371 ASN ASN A . n A 1 71 TYR 71 372 372 TYR TYR A . n A 1 72 SER 72 373 373 SER SER A . n A 1 73 LYS 73 374 374 LYS LYS A . n A 1 74 PHE 74 375 375 PHE PHE A . n A 1 75 TRP 75 376 376 TRP TRP A . n A 1 76 TYR 76 377 377 TYR TYR A . n A 1 77 LEU 77 378 378 LEU LEU A . n A 1 78 GLU 78 379 379 GLU GLU A . n A 1 79 HIS 79 380 380 HIS HIS A . n A 1 80 ALA 80 381 381 ALA ALA A . n A 1 81 LYS 81 382 ? ? ? A . n A 1 82 THR 82 383 ? ? ? A . n A 1 83 GLY 83 384 ? ? ? A . n A 1 84 GLU 84 385 ? ? ? A . n A 1 85 THR 85 386 ? ? ? A . n A 1 86 SER 86 387 ? ? ? A . n A 1 87 VAL 87 388 ? ? ? A . n A 1 88 PRO 88 389 389 PRO PRO A . n A 1 89 LYS 89 390 390 LYS LYS A . n A 1 90 CYS 90 391 391 CYS CYS A . n A 1 91 TRP 91 392 392 TRP TRP A . n A 1 92 LEU 92 393 393 LEU LEU A . n A 1 93 VAL 93 394 394 VAL VAL A . n A 1 94 THR 94 395 395 THR THR A . n A 1 95 ASN 95 396 396 ASN ASN A . n A 1 96 GLY 96 397 397 GLY GLY A . n A 1 97 SER 97 398 398 SER SER A . n A 1 98 TYR 98 399 399 TYR TYR A . n A 1 99 LEU 99 400 400 LEU LEU A . n A 1 100 ASN 100 401 401 ASN ASN A . n A 1 101 GLU 101 402 402 GLU GLU A . n A 1 102 THR 102 403 403 THR THR A . n A 1 103 HIS 103 404 404 HIS HIS A . n A 1 104 PHE 104 405 405 PHE PHE A . n A 1 105 SER 105 406 406 SER SER A . n A 1 106 ASP 106 407 407 ASP ASP A . n A 1 107 GLN 107 408 408 GLN GLN A . n A 1 108 ILE 108 409 409 ILE ILE A . n A 1 109 GLU 109 410 410 GLU GLU A . n A 1 110 GLN 110 411 411 GLN GLN A . n A 1 111 GLU 111 412 412 GLU GLU A . n A 1 112 ALA 112 413 413 ALA ALA A . n A 1 113 ASP 113 414 414 ASP ASP A . n A 1 114 ASN 114 415 415 ASN ASN A . n A 1 115 MET 115 416 416 MET MET A . n A 1 116 ILE 116 417 417 ILE ILE A . n A 1 117 THR 117 418 418 THR THR A . n A 1 118 GLU 118 419 419 GLU GLU A . n A 1 119 MET 119 420 420 MET MET A . n A 1 120 LEU 120 421 421 LEU LEU A . n A 1 121 ARG 121 422 422 ARG ARG A . n A 1 122 LYS 122 423 ? ? ? A . n A 1 123 ASP 123 424 ? ? ? A . n A 1 124 TYR 124 425 ? ? ? A . n A 1 125 ILE 125 426 ? ? ? A . n A 1 126 LYS 126 427 ? ? ? A . n A 1 127 ARG 127 428 ? ? ? A . n A 1 128 GLN 128 429 ? ? ? A . n A 1 129 GLY 129 430 ? ? ? A . n A 1 130 SER 130 431 ? ? ? A . n A 1 131 THR 131 432 ? ? ? A . n A 1 132 PRO 132 433 ? ? ? A . n A 1 133 LEU 133 434 ? ? ? A . n A 1 134 ALA 134 435 ? ? ? A . n A 1 135 LEU 135 436 ? ? ? A . n A 1 136 MET 136 437 ? ? ? A . n A 1 137 ASP 137 438 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD 1 92 92 MPD MPD A . C 2 MPD 1 93 93 MPD MPD A . D 2 MPD 1 94 94 MPD MPD A . E 3 CL 1 95 95 CL CL A . F 4 IUM 1 96 96 IUM IUM A . G 5 HOH 1 1 1 HOH HOH A . G 5 HOH 2 2 2 HOH HOH A . G 5 HOH 3 3 3 HOH HOH A . G 5 HOH 4 4 4 HOH HOH A . G 5 HOH 5 5 5 HOH HOH A . G 5 HOH 6 6 6 HOH HOH A . G 5 HOH 7 7 7 HOH HOH A . G 5 HOH 8 8 8 HOH HOH A . G 5 HOH 9 9 9 HOH HOH A . G 5 HOH 10 10 10 HOH HOH A . G 5 HOH 11 11 11 HOH HOH A . G 5 HOH 12 12 12 HOH HOH A . G 5 HOH 13 13 13 HOH HOH A . G 5 HOH 14 14 14 HOH HOH A . G 5 HOH 15 15 15 HOH HOH A . G 5 HOH 16 16 16 HOH HOH A . G 5 HOH 17 17 17 HOH HOH A . G 5 HOH 18 18 18 HOH HOH A . G 5 HOH 19 19 19 HOH HOH A . G 5 HOH 20 20 20 HOH HOH A . G 5 HOH 21 21 21 HOH HOH A . G 5 HOH 22 22 22 HOH HOH A . G 5 HOH 23 23 23 HOH HOH A . G 5 HOH 24 24 24 HOH HOH A . G 5 HOH 25 25 25 HOH HOH A . G 5 HOH 26 26 26 HOH HOH A . G 5 HOH 27 27 27 HOH HOH A . G 5 HOH 28 28 28 HOH HOH A . G 5 HOH 29 29 29 HOH HOH A . G 5 HOH 30 30 30 HOH HOH A . G 5 HOH 31 31 31 HOH HOH A . G 5 HOH 32 32 32 HOH HOH A . G 5 HOH 33 33 33 HOH HOH A . G 5 HOH 34 34 34 HOH HOH A . G 5 HOH 35 35 35 HOH HOH A . G 5 HOH 36 36 36 HOH HOH A . G 5 HOH 37 37 37 HOH HOH A . G 5 HOH 38 38 38 HOH HOH A . G 5 HOH 39 39 39 HOH HOH A . G 5 HOH 40 40 40 HOH HOH A . G 5 HOH 41 41 41 HOH HOH A . G 5 HOH 42 42 42 HOH HOH A . G 5 HOH 43 43 43 HOH HOH A . G 5 HOH 44 44 44 HOH HOH A . G 5 HOH 45 45 45 HOH HOH A . G 5 HOH 46 46 46 HOH HOH A . G 5 HOH 47 47 47 HOH HOH A . G 5 HOH 48 48 48 HOH HOH A . G 5 HOH 49 49 49 HOH HOH A . G 5 HOH 50 50 50 HOH HOH A . G 5 HOH 51 51 51 HOH HOH A . G 5 HOH 52 52 52 HOH HOH A . G 5 HOH 53 53 53 HOH HOH A . G 5 HOH 54 54 54 HOH HOH A . G 5 HOH 55 55 55 HOH HOH A . G 5 HOH 56 56 56 HOH HOH A . G 5 HOH 57 57 57 HOH HOH A . G 5 HOH 58 58 58 HOH HOH A . G 5 HOH 59 59 59 HOH HOH A . G 5 HOH 60 60 60 HOH HOH A . G 5 HOH 61 61 61 HOH HOH A . G 5 HOH 62 62 62 HOH HOH A . G 5 HOH 63 63 63 HOH HOH A . G 5 HOH 64 64 64 HOH HOH A . G 5 HOH 65 65 65 HOH HOH A . G 5 HOH 66 66 66 HOH HOH A . G 5 HOH 67 67 67 HOH HOH A . G 5 HOH 68 68 68 HOH HOH A . G 5 HOH 69 69 69 HOH HOH A . G 5 HOH 70 70 70 HOH HOH A . G 5 HOH 71 71 71 HOH HOH A . G 5 HOH 72 72 72 HOH HOH A . G 5 HOH 73 73 73 HOH HOH A . G 5 HOH 74 74 74 HOH HOH A . G 5 HOH 75 75 75 HOH HOH A . G 5 HOH 76 76 76 HOH HOH A . G 5 HOH 77 77 77 HOH HOH A . G 5 HOH 78 78 78 HOH HOH A . G 5 HOH 79 79 79 HOH HOH A . G 5 HOH 80 80 80 HOH HOH A . G 5 HOH 81 81 81 HOH HOH A . G 5 HOH 82 82 82 HOH HOH A . G 5 HOH 83 83 83 HOH HOH A . G 5 HOH 84 84 84 HOH HOH A . G 5 HOH 85 85 85 HOH HOH A . G 5 HOH 86 86 86 HOH HOH A . G 5 HOH 87 87 87 HOH HOH A . G 5 HOH 88 88 88 HOH HOH A . G 5 HOH 89 89 89 HOH HOH A . G 5 HOH 90 90 90 HOH HOH A . G 5 HOH 91 91 91 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10830 ? 1 MORE -118 ? 1 'SSA (A^2)' 17410 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 -26.4625000000 0.8660254038 -0.5000000000 0.0000000000 45.8343944953 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5000000000 0.8660254038 0.0000000000 -52.9250000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 95 ? E CL . 2 1 A IUM 96 ? F IUM . 3 1 A HOH 68 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-12-14 4 'Structure model' 1 3 2011-12-28 5 'Structure model' 1 4 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 5 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 5 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 SHARP phasing . ? 2 BUSTER-TNT refinement 2.7.0 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3MKO _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THESE FOUR RESIDUES CORRESPOND TO A PROTEASE (FACTOR XA) CLEAVAGE SITE' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 IUM _pdbx_validate_close_contact.auth_seq_id_1 96 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 87 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.05 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 390 ? ? 134.86 -100.58 2 1 LEU A 421 ? ? -66.91 17.44 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 302 ? A HIS 1 2 1 Y 1 A HIS 303 ? A HIS 2 3 1 Y 1 A HIS 304 ? A HIS 3 4 1 Y 1 A HIS 305 ? A HIS 4 5 1 Y 1 A HIS 306 ? A HIS 5 6 1 Y 1 A HIS 307 ? A HIS 6 7 1 Y 1 A ILE 308 ? A ILE 7 8 1 Y 1 A GLU 309 ? A GLU 8 9 1 Y 1 A GLY 310 ? A GLY 9 10 1 Y 1 A ARG 311 ? A ARG 10 11 1 Y 1 A ASP 312 ? A ASP 11 12 1 Y 1 A LYS 382 ? A LYS 81 13 1 Y 1 A THR 383 ? A THR 82 14 1 Y 1 A GLY 384 ? A GLY 83 15 1 Y 1 A GLU 385 ? A GLU 84 16 1 Y 1 A THR 386 ? A THR 85 17 1 Y 1 A SER 387 ? A SER 86 18 1 Y 1 A VAL 388 ? A VAL 87 19 1 Y 1 A LYS 423 ? A LYS 122 20 1 Y 1 A ASP 424 ? A ASP 123 21 1 Y 1 A TYR 425 ? A TYR 124 22 1 Y 1 A ILE 426 ? A ILE 125 23 1 Y 1 A LYS 427 ? A LYS 126 24 1 Y 1 A ARG 428 ? A ARG 127 25 1 Y 1 A GLN 429 ? A GLN 128 26 1 Y 1 A GLY 430 ? A GLY 129 27 1 Y 1 A SER 431 ? A SER 130 28 1 Y 1 A THR 432 ? A THR 131 29 1 Y 1 A PRO 433 ? A PRO 132 30 1 Y 1 A LEU 434 ? A LEU 133 31 1 Y 1 A ALA 435 ? A ALA 134 32 1 Y 1 A LEU 436 ? A LEU 135 33 1 Y 1 A MET 437 ? A MET 136 34 1 Y 1 A ASP 438 ? A ASP 137 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 'CHLORIDE ION' CL 4 'URANYL (VI) ION' IUM 5 water HOH #