data_3NJ7 # _entry.id 3NJ7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NJ7 pdb_00003nj7 10.2210/pdb3nj7/pdb NDB NA0607 ? ? RCSB RCSB059896 ? ? WWPDB D_1000059896 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3NJ6 _pdbx_database_related.details '0.95 A resolution X-ray structure of (GGCAGCAGCC)2' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NJ7 _pdbx_database_status.recvd_initial_deposition_date 2010-06-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kiliszek, A.' 1 'Kierzek, R.' 2 'Krzyzosiak, W.J.' 3 'Rypniewski, W.' 4 # _citation.id primary _citation.title ;Atomic resolution structure of CAG RNA repeats: structural insights and implications for the trinucleotide repeat expansion diseases. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 38 _citation.page_first 8370 _citation.page_last 8376 _citation.year 2010 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20702420 _citation.pdbx_database_id_DOI 10.1093/nar/gkq700 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kiliszek, A.' 1 ? primary 'Kierzek, R.' 2 ? primary 'Krzyzosiak, W.J.' 3 ? primary 'Rypniewski, W.' 4 ? # _cell.entry_id 3NJ7 _cell.length_a 47.366 _cell.length_b 47.366 _cell.length_c 83.209 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NJ7 _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*CP*AP*GP*CP*AP*GP*CP*C)-3'" 3215.004 6 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 6 ? ? ? ? 3 water nat water 18.015 177 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCAGCAGCC _entity_poly.pdbx_seq_one_letter_code_can GGCAGCAGCC _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 A n 1 5 G n 1 6 C n 1 7 A n 1 8 G n 1 9 C n 1 10 C n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3NJ7 _struct_ref.pdbx_db_accession 3NJ7 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGCAGCAGCC _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NJ7 A 1 ? 10 ? 3NJ7 1 ? 10 ? 1 10 2 1 3NJ7 B 1 ? 10 ? 3NJ7 1 ? 10 ? 1 10 3 1 3NJ7 C 1 ? 10 ? 3NJ7 1 ? 10 ? 1 10 4 1 3NJ7 D 1 ? 10 ? 3NJ7 1 ? 10 ? 1 10 5 1 3NJ7 E 1 ? 10 ? 3NJ7 1 ? 10 ? 1 10 6 1 3NJ7 F 1 ? 10 ? 3NJ7 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 # _exptl.entry_id 3NJ7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 55.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'MgSO4, (NH4)2SO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 303K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2009-02-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.81230 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X13' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X13 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.81230 # _reflns.entry_id 3NJ7 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 18.6 _reflns.d_resolution_high 1.9 _reflns.number_obs 16346 _reflns.number_all 16346 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.105 _reflns.pdbx_netI_over_sigmaI 18.2 _reflns.B_iso_Wilson_estimate 25.7 _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.518 _reflns_shell.meanI_over_sigI_obs 6.2 _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 801 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NJ7 _refine.ls_number_reflns_obs 16234 _refine.ls_number_reflns_all 16234 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.98 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.553 _refine.ls_d_res_high 1.904 _refine.ls_percent_reflns_obs 99.39 _refine.ls_R_factor_obs 0.2136 _refine.ls_R_factor_all 0.2136 _refine.ls_R_factor_R_work 0.2117 _refine.ls_R_factor_R_free 0.2482 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.06 _refine.ls_number_reflns_R_free 821 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.42 _refine.aniso_B[1][1] -0.9073 _refine.aniso_B[2][2] -0.9073 _refine.aniso_B[3][3] 1.8146 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.382 _refine.solvent_model_param_bsol 49.154 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3NJ6 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'TLS refinement' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.21 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3NJ7 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1278 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 177 _refine_hist.number_atoms_total 1485 _refine_hist.d_res_high 1.904 _refine_hist.d_res_low 18.553 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1452 'X-RAY DIFFRACTION' ? f_angle_d 1.372 ? ? 2256 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.419 ? ? 576 'X-RAY DIFFRACTION' ? f_chiral_restr 0.054 ? ? 294 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 60 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.904 2.0229 2580 0.2517 100.00 0.3083 . . 135 . . 2715 . 'X-RAY DIFFRACTION' . 2.0229 2.1788 2593 0.2147 100.00 0.2285 . . 123 . . 2716 . 'X-RAY DIFFRACTION' . 2.1788 2.3977 2562 0.1953 100.00 0.2238 . . 151 . . 2713 . 'X-RAY DIFFRACTION' . 2.3977 2.7437 2589 0.2078 100.00 0.2417 . . 142 . . 2731 . 'X-RAY DIFFRACTION' . 2.7437 3.4531 2552 0.2065 99.00 0.2383 . . 141 . . 2693 . 'X-RAY DIFFRACTION' . 3.4531 18.5538 2537 0.2079 98.00 0.2575 . . 129 . . 2666 . 'X-RAY DIFFRACTION' # _struct.entry_id 3NJ7 _struct.title '1.9 A resolution X-ray structure of (GGCAGCAGCC)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NJ7 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'CAG repeats, poly-Q diseases, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 2 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 2 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 2 B C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 5 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 5 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 5 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 6 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 6 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 6 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 9 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 9 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 9 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 1 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 1 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 1 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 9 N3 ? ? C G 2 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 9 O2 ? ? C G 2 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 9 N4 ? ? C G 2 D C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 3 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 5 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 5 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 5 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 6 D G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 6 D G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 6 D G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 3 N3 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 3 O2 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 3 N4 ? ? C G 8 D C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 9 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 9 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 9 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 10 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 10 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 10 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 10 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 10 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 10 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E G 1 N1 ? ? ? 1_555 F C 10 N3 ? ? E G 1 F C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E G 1 N2 ? ? ? 1_555 F C 10 O2 ? ? E G 1 F C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E G 1 O6 ? ? ? 1_555 F C 10 N4 ? ? E G 1 F C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E G 2 N1 ? ? ? 1_555 F C 9 N3 ? ? E G 2 F C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E G 2 N2 ? ? ? 1_555 F C 9 O2 ? ? E G 2 F C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E G 2 O6 ? ? ? 1_555 F C 9 N4 ? ? E G 2 F C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E C 3 N3 ? ? ? 1_555 F G 8 N1 ? ? E C 3 F G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E C 3 N4 ? ? ? 1_555 F G 8 O6 ? ? E C 3 F G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E C 3 O2 ? ? ? 1_555 F G 8 N2 ? ? E C 3 F G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E G 5 N1 ? ? ? 1_555 F C 6 N3 ? ? E G 5 F C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E G 5 N2 ? ? ? 1_555 F C 6 O2 ? ? E G 5 F C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E G 5 O6 ? ? ? 1_555 F C 6 N4 ? ? E G 5 F C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E C 6 N3 ? ? ? 1_555 F G 5 N1 ? ? E C 6 F G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E C 6 N4 ? ? ? 1_555 F G 5 O6 ? ? E C 6 F G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E C 6 O2 ? ? ? 1_555 F G 5 N2 ? ? E C 6 F G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E G 8 N1 ? ? ? 1_555 F C 3 N3 ? ? E G 8 F C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E G 8 N2 ? ? ? 1_555 F C 3 O2 ? ? E G 8 F C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E G 8 O6 ? ? ? 1_555 F C 3 N4 ? ? E G 8 F C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E C 9 N3 ? ? ? 1_555 F G 2 N1 ? ? E C 9 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E C 9 N4 ? ? ? 1_555 F G 2 O6 ? ? E C 9 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E C 9 O2 ? ? ? 1_555 F G 2 N2 ? ? E C 9 F G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E C 10 N3 ? ? ? 1_555 F G 1 N1 ? ? E C 10 F G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E C 10 N4 ? ? ? 1_555 F G 1 O6 ? ? E C 10 F G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E C 10 O2 ? ? ? 1_555 F G 1 N2 ? ? E C 10 F G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 11 ? 4 'BINDING SITE FOR RESIDUE SO4 A 11' AC2 Software B SO4 11 ? 3 'BINDING SITE FOR RESIDUE SO4 B 11' AC3 Software C SO4 11 ? 3 'BINDING SITE FOR RESIDUE SO4 C 11' AC4 Software D SO4 11 ? 3 'BINDING SITE FOR RESIDUE SO4 D 11' AC5 Software E SO4 11 ? 3 'BINDING SITE FOR RESIDUE SO4 E 11' AC6 Software E SO4 12 ? 2 'BINDING SITE FOR RESIDUE SO4 E 12' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 A A 7 ? A A 7 . ? 1_555 ? 2 AC1 4 HOH M . ? HOH A 64 . ? 1_555 ? 3 AC1 4 HOH M . ? HOH A 183 . ? 1_555 ? 4 AC1 4 A B 4 ? A B 4 . ? 1_555 ? 5 AC2 3 A A 4 ? A A 4 . ? 1_555 ? 6 AC2 3 A B 7 ? A B 7 . ? 1_555 ? 7 AC2 3 HOH N . ? HOH B 110 . ? 1_555 ? 8 AC3 3 A C 7 ? A C 7 . ? 1_555 ? 9 AC3 3 HOH O . ? HOH C 50 . ? 1_555 ? 10 AC3 3 A D 4 ? A D 4 . ? 1_555 ? 11 AC4 3 A C 4 ? A C 4 . ? 1_555 ? 12 AC4 3 A D 7 ? A D 7 . ? 1_555 ? 13 AC4 3 HOH P . ? HOH D 102 . ? 1_555 ? 14 AC5 3 A E 4 ? A E 4 . ? 1_555 ? 15 AC5 3 HOH Q . ? HOH E 159 . ? 1_555 ? 16 AC5 3 A F 7 ? A F 7 . ? 1_555 ? 17 AC6 2 A E 7 ? A E 7 . ? 1_555 ? 18 AC6 2 A F 4 ? A F 4 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NJ7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NJ7 _atom_sites.fract_transf_matrix[1][1] 0.021112 _atom_sites.fract_transf_matrix[1][2] 0.012189 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024378 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012018 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 A 7 7 7 A A A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 C 3 3 3 C C B . n B 1 4 A 4 4 4 A A B . n B 1 5 G 5 5 5 G G B . n B 1 6 C 6 6 6 C C B . n B 1 7 A 7 7 7 A A B . n B 1 8 G 8 8 8 G G B . n B 1 9 C 9 9 9 C C B . n B 1 10 C 10 10 10 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 G 2 2 2 G G C . n C 1 3 C 3 3 3 C C C . n C 1 4 A 4 4 4 A A C . n C 1 5 G 5 5 5 G G C . n C 1 6 C 6 6 6 C C C . n C 1 7 A 7 7 7 A A C . n C 1 8 G 8 8 8 G G C . n C 1 9 C 9 9 9 C C C . n C 1 10 C 10 10 10 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 G 2 2 2 G G D . n D 1 3 C 3 3 3 C C D . n D 1 4 A 4 4 4 A A D . n D 1 5 G 5 5 5 G G D . n D 1 6 C 6 6 6 C C D . n D 1 7 A 7 7 7 A A D . n D 1 8 G 8 8 8 G G D . n D 1 9 C 9 9 9 C C D . n D 1 10 C 10 10 10 C C D . n E 1 1 G 1 1 1 G G E . n E 1 2 G 2 2 2 G G E . n E 1 3 C 3 3 3 C C E . n E 1 4 A 4 4 4 A A E . n E 1 5 G 5 5 5 G G E . n E 1 6 C 6 6 6 C C E . n E 1 7 A 7 7 7 A A E . n E 1 8 G 8 8 8 G G E . n E 1 9 C 9 9 9 C C E . n E 1 10 C 10 10 10 C C E . n F 1 1 G 1 1 1 G G F . n F 1 2 G 2 2 2 G G F . n F 1 3 C 3 3 3 C C F . n F 1 4 A 4 4 4 A A F . n F 1 5 G 5 5 5 G G F . n F 1 6 C 6 6 6 C C F . n F 1 7 A 7 7 7 A A F . n F 1 8 G 8 8 8 G G F . n F 1 9 C 9 9 9 C C F . n F 1 10 C 10 10 10 C C F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 1 11 1 SO4 SO4 A . H 2 SO4 1 11 2 SO4 SO4 B . I 2 SO4 1 11 5 SO4 SO4 C . J 2 SO4 1 11 6 SO4 SO4 D . K 2 SO4 1 11 3 SO4 SO4 E . L 2 SO4 1 12 4 SO4 SO4 E . M 3 HOH 1 12 3 HOH HOH A . M 3 HOH 2 13 5 HOH HOH A . M 3 HOH 3 14 11 HOH HOH A . M 3 HOH 4 21 21 HOH HOH A . M 3 HOH 5 33 33 HOH HOH A . M 3 HOH 6 42 42 HOH HOH A . M 3 HOH 7 46 46 HOH HOH A . M 3 HOH 8 61 61 HOH HOH A . M 3 HOH 9 64 64 HOH HOH A . M 3 HOH 10 65 65 HOH HOH A . M 3 HOH 11 74 74 HOH HOH A . M 3 HOH 12 75 75 HOH HOH A . M 3 HOH 13 78 78 HOH HOH A . M 3 HOH 14 93 93 HOH HOH A . M 3 HOH 15 99 99 HOH HOH A . M 3 HOH 16 106 106 HOH HOH A . M 3 HOH 17 108 108 HOH HOH A . M 3 HOH 18 119 119 HOH HOH A . M 3 HOH 19 121 121 HOH HOH A . M 3 HOH 20 130 130 HOH HOH A . M 3 HOH 21 133 133 HOH HOH A . M 3 HOH 22 137 137 HOH HOH A . M 3 HOH 23 139 139 HOH HOH A . M 3 HOH 24 157 157 HOH HOH A . M 3 HOH 25 167 167 HOH HOH A . M 3 HOH 26 169 169 HOH HOH A . M 3 HOH 27 179 179 HOH HOH A . M 3 HOH 28 181 181 HOH HOH A . M 3 HOH 29 183 183 HOH HOH A . M 3 HOH 30 186 186 HOH HOH A . N 3 HOH 1 12 6 HOH HOH B . N 3 HOH 2 17 17 HOH HOH B . N 3 HOH 3 25 25 HOH HOH B . N 3 HOH 4 28 28 HOH HOH B . N 3 HOH 5 34 34 HOH HOH B . N 3 HOH 6 41 41 HOH HOH B . N 3 HOH 7 49 49 HOH HOH B . N 3 HOH 8 58 58 HOH HOH B . N 3 HOH 9 69 69 HOH HOH B . N 3 HOH 10 71 71 HOH HOH B . N 3 HOH 11 77 77 HOH HOH B . N 3 HOH 12 86 86 HOH HOH B . N 3 HOH 13 98 98 HOH HOH B . N 3 HOH 14 109 109 HOH HOH B . N 3 HOH 15 110 110 HOH HOH B . N 3 HOH 16 114 114 HOH HOH B . N 3 HOH 17 122 122 HOH HOH B . N 3 HOH 18 134 134 HOH HOH B . N 3 HOH 19 135 135 HOH HOH B . N 3 HOH 20 153 153 HOH HOH B . N 3 HOH 21 171 171 HOH HOH B . N 3 HOH 22 177 177 HOH HOH B . N 3 HOH 23 189 189 HOH HOH B . N 3 HOH 24 191 191 HOH HOH B . O 3 HOH 1 12 2 HOH HOH C . O 3 HOH 2 13 13 HOH HOH C . O 3 HOH 3 18 18 HOH HOH C . O 3 HOH 4 22 22 HOH HOH C . O 3 HOH 5 23 23 HOH HOH C . O 3 HOH 6 26 26 HOH HOH C . O 3 HOH 7 27 27 HOH HOH C . O 3 HOH 8 31 31 HOH HOH C . O 3 HOH 9 35 35 HOH HOH C . O 3 HOH 10 36 36 HOH HOH C . O 3 HOH 11 45 45 HOH HOH C . O 3 HOH 12 50 50 HOH HOH C . O 3 HOH 13 54 54 HOH HOH C . O 3 HOH 14 56 56 HOH HOH C . O 3 HOH 15 60 60 HOH HOH C . O 3 HOH 16 62 62 HOH HOH C . O 3 HOH 17 67 67 HOH HOH C . O 3 HOH 18 68 68 HOH HOH C . O 3 HOH 19 76 76 HOH HOH C . O 3 HOH 20 85 85 HOH HOH C . O 3 HOH 21 90 90 HOH HOH C . O 3 HOH 22 92 92 HOH HOH C . O 3 HOH 23 94 94 HOH HOH C . O 3 HOH 24 103 103 HOH HOH C . O 3 HOH 25 111 111 HOH HOH C . O 3 HOH 26 113 113 HOH HOH C . O 3 HOH 27 123 123 HOH HOH C . O 3 HOH 28 125 125 HOH HOH C . O 3 HOH 29 126 126 HOH HOH C . O 3 HOH 30 128 128 HOH HOH C . O 3 HOH 31 143 143 HOH HOH C . O 3 HOH 32 150 150 HOH HOH C . O 3 HOH 33 152 152 HOH HOH C . O 3 HOH 34 160 160 HOH HOH C . O 3 HOH 35 168 168 HOH HOH C . O 3 HOH 36 174 174 HOH HOH C . O 3 HOH 37 192 192 HOH HOH C . P 3 HOH 1 12 1 HOH HOH D . P 3 HOH 2 13 4 HOH HOH D . P 3 HOH 3 14 14 HOH HOH D . P 3 HOH 4 15 10 HOH HOH D . P 3 HOH 5 19 19 HOH HOH D . P 3 HOH 6 32 32 HOH HOH D . P 3 HOH 7 37 37 HOH HOH D . P 3 HOH 8 43 43 HOH HOH D . P 3 HOH 9 44 44 HOH HOH D . P 3 HOH 10 47 47 HOH HOH D . P 3 HOH 11 52 52 HOH HOH D . P 3 HOH 12 53 53 HOH HOH D . P 3 HOH 13 55 55 HOH HOH D . P 3 HOH 14 59 59 HOH HOH D . P 3 HOH 15 63 63 HOH HOH D . P 3 HOH 16 66 66 HOH HOH D . P 3 HOH 17 70 70 HOH HOH D . P 3 HOH 18 73 73 HOH HOH D . P 3 HOH 19 81 81 HOH HOH D . P 3 HOH 20 87 87 HOH HOH D . P 3 HOH 21 88 88 HOH HOH D . P 3 HOH 22 96 96 HOH HOH D . P 3 HOH 23 100 100 HOH HOH D . P 3 HOH 24 102 102 HOH HOH D . P 3 HOH 25 104 104 HOH HOH D . P 3 HOH 26 112 112 HOH HOH D . P 3 HOH 27 115 115 HOH HOH D . P 3 HOH 28 117 117 HOH HOH D . P 3 HOH 29 120 120 HOH HOH D . P 3 HOH 30 127 127 HOH HOH D . P 3 HOH 31 129 129 HOH HOH D . P 3 HOH 32 131 131 HOH HOH D . P 3 HOH 33 138 138 HOH HOH D . P 3 HOH 34 141 141 HOH HOH D . P 3 HOH 35 145 145 HOH HOH D . P 3 HOH 36 170 170 HOH HOH D . P 3 HOH 37 178 178 HOH HOH D . P 3 HOH 38 180 180 HOH HOH D . P 3 HOH 39 190 190 HOH HOH D . Q 3 HOH 1 13 7 HOH HOH E . Q 3 HOH 2 16 16 HOH HOH E . Q 3 HOH 3 24 24 HOH HOH E . Q 3 HOH 4 29 29 HOH HOH E . Q 3 HOH 5 38 38 HOH HOH E . Q 3 HOH 6 39 39 HOH HOH E . Q 3 HOH 7 40 40 HOH HOH E . Q 3 HOH 8 79 79 HOH HOH E . Q 3 HOH 9 82 82 HOH HOH E . Q 3 HOH 10 83 83 HOH HOH E . Q 3 HOH 11 84 84 HOH HOH E . Q 3 HOH 12 97 97 HOH HOH E . Q 3 HOH 13 105 105 HOH HOH E . Q 3 HOH 14 107 107 HOH HOH E . Q 3 HOH 15 116 116 HOH HOH E . Q 3 HOH 16 142 142 HOH HOH E . Q 3 HOH 17 147 147 HOH HOH E . Q 3 HOH 18 148 148 HOH HOH E . Q 3 HOH 19 159 159 HOH HOH E . Q 3 HOH 20 173 173 HOH HOH E . Q 3 HOH 21 176 176 HOH HOH E . Q 3 HOH 22 188 188 HOH HOH E . Q 3 HOH 23 193 193 HOH HOH E . R 3 HOH 1 11 8 HOH HOH F . R 3 HOH 2 12 12 HOH HOH F . R 3 HOH 3 13 9 HOH HOH F . R 3 HOH 4 15 15 HOH HOH F . R 3 HOH 5 20 20 HOH HOH F . R 3 HOH 6 30 30 HOH HOH F . R 3 HOH 7 48 48 HOH HOH F . R 3 HOH 8 57 57 HOH HOH F . R 3 HOH 9 80 80 HOH HOH F . R 3 HOH 10 89 89 HOH HOH F . R 3 HOH 11 91 91 HOH HOH F . R 3 HOH 12 95 95 HOH HOH F . R 3 HOH 13 101 101 HOH HOH F . R 3 HOH 14 118 118 HOH HOH F . R 3 HOH 15 136 136 HOH HOH F . R 3 HOH 16 146 146 HOH HOH F . R 3 HOH 17 149 149 HOH HOH F . R 3 HOH 18 151 151 HOH HOH F . R 3 HOH 19 156 156 HOH HOH F . R 3 HOH 20 163 163 HOH HOH F . R 3 HOH 21 166 166 HOH HOH F . R 3 HOH 22 172 172 HOH HOH F . R 3 HOH 23 175 175 HOH HOH F . R 3 HOH 24 194 194 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H,M,N 2 1 C,D,I,J,O,P 3 1 E,F,K,L,Q,R # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 990 ? 1 MORE -3 ? 1 'SSA (A^2)' 3930 ? 2 'ABSA (A^2)' 980 ? 2 MORE -4 ? 2 'SSA (A^2)' 3930 ? 3 'ABSA (A^2)' 990 ? 3 MORE -4 ? 3 'SSA (A^2)' 3920 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' diffrn_source 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 19.9554 -15.2386 4.6906 0.3265 0.1995 0.1226 0.0940 0.0148 -0.0284 0.8218 1.5973 3.2157 -0.4260 2.4797 -3.8418 0.1395 0.0208 0.0101 -0.2612 -0.0108 -0.0299 0.2549 0.1850 -0.1289 'X-RAY DIFFRACTION' 2 ? refined 19.8963 -11.0863 8.1419 0.2468 0.2053 0.1658 -0.0249 -0.0001 -0.0168 0.1905 2.5950 2.0244 0.4880 -1.1298 -3.0952 0.1736 -0.0243 -0.0685 -0.1359 0.0337 0.1991 0.1528 0.1169 -0.1659 'X-RAY DIFFRACTION' 3 ? refined 3.4883 -1.8458 -9.2346 0.2478 0.1970 0.1923 -0.0432 0.0115 0.0009 0.0207 1.0620 0.7891 0.8934 1.1386 1.8878 0.0739 0.0250 0.0198 0.0141 0.0669 -0.0426 -0.0032 -0.1159 -0.1164 'X-RAY DIFFRACTION' 4 ? refined -0.1566 -3.9472 -5.7561 0.1737 0.2394 0.1900 -0.0067 0.0111 0.0098 1.8372 -0.3515 0.9512 0.0537 2.2851 0.4988 0.1000 -0.0963 0.0021 -0.0066 0.0126 0.0040 -0.0447 -0.0923 -0.0895 'X-RAY DIFFRACTION' 5 ? refined 4.1274 -29.3325 4.6051 0.2868 0.2181 0.1639 -0.0473 0.0074 0.0278 1.1019 1.3989 1.9958 0.7950 1.7638 3.1805 0.0330 -0.0917 -0.0798 -0.0045 0.0832 0.0604 -0.0038 -0.2390 -0.1011 'X-RAY DIFFRACTION' 6 ? refined 0.4997 -31.3587 8.0489 0.1892 0.3686 0.1864 0.0064 0.0095 0.0280 1.6562 -0.3371 3.0154 0.1640 3.7716 -0.0266 0.0746 -0.2699 -0.0050 -0.0039 0.0705 -0.0201 -0.1289 -0.3980 -0.1546 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 10 'chain A' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 1 B 10 'chain B' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 1 C 10 'chain C' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 1 D 10 'chain D' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 E 1 E 10 'chain E' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 F 1 F 10 'chain F' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.5_2)' ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_bond.auth_asym_id_1 E _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C5'" _pdbx_validate_rmsd_bond.auth_asym_id_2 E _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 5 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.365 _pdbx_validate_rmsd_bond.bond_target_value 1.420 _pdbx_validate_rmsd_bond.bond_deviation -0.055 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 5 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 95.79 _pdbx_validate_rmsd_angle.angle_target_value 102.60 _pdbx_validate_rmsd_angle.angle_deviation -6.81 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 SO4 S S N N 114 SO4 O1 O N N 115 SO4 O2 O N N 116 SO4 O3 O N N 117 SO4 O4 O N N 118 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SO4 S O1 doub N N 118 SO4 S O2 doub N N 119 SO4 S O3 sing N N 120 SO4 S O4 sing N N 121 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3NJ7 'a-form double helix' 3NJ7 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 10 1_555 -0.331 -0.265 -0.054 -4.462 -0.546 -1.985 1 A_G1:C10_B A 1 ? B 10 ? 19 1 1 A G 2 1_555 B C 9 1_555 -0.403 -0.168 -0.177 -2.659 -8.666 -1.967 2 A_G2:C9_B A 2 ? B 9 ? 19 1 1 A C 3 1_555 B G 8 1_555 0.323 -0.222 0.208 -3.251 -7.373 1.054 3 A_C3:G8_B A 3 ? B 8 ? 19 1 1 A G 5 1_555 B C 6 1_555 -0.186 -0.036 -0.106 0.465 -3.269 4.819 4 A_G5:C6_B A 5 ? B 6 ? 19 1 1 A C 6 1_555 B G 5 1_555 0.147 -0.151 -0.152 -2.000 -6.683 -0.169 5 A_C6:G5_B A 6 ? B 5 ? 19 1 1 A G 8 1_555 B C 3 1_555 -0.352 -0.172 0.021 3.984 -8.436 1.492 6 A_G8:C3_B A 8 ? B 3 ? 19 1 1 A C 9 1_555 B G 2 1_555 0.141 -0.144 -0.169 6.266 -10.158 -4.338 7 A_C9:G2_B A 9 ? B 2 ? 19 1 1 A C 10 1_555 B G 1 1_555 0.314 -0.171 -0.034 5.729 -5.582 -0.507 8 A_C10:G1_B A 10 ? B 1 ? 19 1 1 C G 1 1_555 D C 10 1_555 -0.329 -0.097 0.011 -4.592 -2.766 -0.828 9 C_G1:C10_D C 1 ? D 10 ? 19 1 1 C G 2 1_555 D C 9 1_555 -0.424 -0.118 -0.209 -4.992 -9.132 0.554 10 C_G2:C9_D C 2 ? D 9 ? 19 1 1 C C 3 1_555 D G 8 1_555 0.217 -0.134 0.070 -3.016 -9.560 -0.794 11 C_C3:G8_D C 3 ? D 8 ? 19 1 1 C G 5 1_555 D C 6 1_555 -0.227 -0.123 -0.048 2.417 -3.484 2.133 12 C_G5:C6_D C 5 ? D 6 ? 19 1 1 C C 6 1_555 D G 5 1_555 0.233 -0.039 -0.037 -2.294 -3.827 3.952 13 C_C6:G5_D C 6 ? D 5 ? 19 1 1 C G 8 1_555 D C 3 1_555 -0.231 -0.166 -0.033 1.597 -9.627 -0.179 14 C_G8:C3_D C 8 ? D 3 ? 19 1 1 C C 9 1_555 D G 2 1_555 0.468 -0.032 -0.247 6.167 -11.412 1.129 15 C_C9:G2_D C 9 ? D 2 ? 19 1 1 C C 10 1_555 D G 1 1_555 0.404 -0.076 -0.057 5.439 -2.604 -0.342 16 C_C10:G1_D C 10 ? D 1 ? 19 1 1 E G 1 1_555 F C 10 1_555 -0.240 -0.172 0.036 -6.549 -4.128 0.165 17 E_G1:C10_F E 1 ? F 10 ? 19 1 1 E G 2 1_555 F C 9 1_555 -0.221 -0.190 -0.201 -7.631 -11.555 -3.646 18 E_G2:C9_F E 2 ? F 9 ? 19 1 1 E C 3 1_555 F G 8 1_555 0.340 -0.161 -0.053 -4.116 -9.376 1.578 19 E_C3:G8_F E 3 ? F 8 ? 19 1 1 E G 5 1_555 F C 6 1_555 -0.206 -0.222 -0.090 3.206 -5.850 0.820 20 E_G5:C6_F E 5 ? F 6 ? 19 1 1 E C 6 1_555 F G 5 1_555 0.271 -0.022 -0.120 1.205 -4.633 4.528 21 E_C6:G5_F E 6 ? F 5 ? 19 1 1 E G 8 1_555 F C 3 1_555 -0.257 -0.180 0.125 1.051 -7.406 1.422 22 E_G8:C3_F E 8 ? F 3 ? 19 1 1 E C 9 1_555 F G 2 1_555 0.410 -0.062 -0.222 4.376 -8.732 -1.053 23 E_C9:G2_F E 9 ? F 2 ? 19 1 1 E C 10 1_555 F G 1 1_555 0.302 -0.258 -0.143 6.168 -1.885 -1.734 24 E_C10:G1_F E 10 ? F 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 10 1_555 A G 2 1_555 B C 9 1_555 -0.543 -2.131 3.294 -0.779 4.324 30.226 -4.874 0.881 2.980 8.238 1.483 30.536 1 AA_G1G2:C9C10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A G 2 1_555 B C 9 1_555 A C 3 1_555 B G 8 1_555 -0.136 -1.741 3.335 -3.582 6.077 33.734 -3.864 -0.315 2.983 10.331 6.089 34.443 2 AA_G2C3:G8C9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A G 5 1_555 B C 6 1_555 A C 6 1_555 B G 5 1_555 -0.256 -2.421 3.424 0.785 0.726 28.261 -5.129 0.713 3.354 1.487 -1.607 28.281 3 AA_G5C6:G5C6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A G 8 1_555 B C 3 1_555 A C 9 1_555 B G 2 1_555 -0.293 -1.435 3.255 1.201 6.598 33.791 -3.404 0.673 2.919 11.213 -2.041 34.431 4 AA_G8C9:G2C3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A C 9 1_555 B G 2 1_555 A C 10 1_555 B G 1 1_555 0.739 -1.833 3.308 1.835 5.465 33.475 -3.991 -0.979 3.015 9.401 -3.156 33.953 5 AA_C9C10:G1G2_BB A 9 ? B 2 ? A 10 ? B 1 ? 1 C G 1 1_555 D C 10 1_555 C G 2 1_555 D C 9 1_555 -0.562 -1.861 3.330 -0.140 3.312 31.856 -3.964 0.994 3.128 6.014 0.255 32.024 6 CC_G1G2:C9C10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C G 2 1_555 D C 9 1_555 C C 3 1_555 D G 8 1_555 -0.017 -1.404 3.225 -2.430 7.437 34.341 -3.367 -0.313 2.862 12.397 4.050 35.194 7 CC_G2C3:G8C9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C G 5 1_555 D C 6 1_555 C C 6 1_555 D G 5 1_555 0.071 -2.537 3.422 0.221 1.926 31.885 -4.968 -0.088 3.267 3.502 -0.402 31.942 8 CC_G5C6:G5C6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C G 8 1_555 D C 3 1_555 C C 9 1_555 D G 2 1_555 0.020 -1.292 3.172 1.957 7.063 34.474 -3.114 0.238 2.856 11.752 -3.256 35.222 9 CC_G8C9:G2C3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 C C 9 1_555 D G 2 1_555 C C 10 1_555 D G 1 1_555 0.520 -1.852 3.344 -0.194 4.344 32.043 -4.084 -0.968 3.070 7.824 0.349 32.329 10 CC_C9C10:G1G2_DD C 9 ? D 2 ? C 10 ? D 1 ? 1 E G 1 1_555 F C 10 1_555 E G 2 1_555 F C 9 1_555 -0.790 -1.791 3.338 -0.725 4.266 33.238 -3.800 1.253 3.107 7.418 1.260 33.510 11 EE_G1G2:C9C10_FF E 1 ? F 10 ? E 2 ? F 9 ? 1 E G 2 1_555 F C 9 1_555 E C 3 1_555 F G 8 1_555 0.290 -1.424 3.226 -0.729 6.897 33.908 -3.398 -0.594 2.883 11.674 1.233 34.590 12 EE_G2C3:G8C9_FF E 2 ? F 9 ? E 3 ? F 8 ? 1 E G 5 1_555 F C 6 1_555 E C 6 1_555 F G 5 1_555 0.233 -2.435 3.410 0.460 0.341 28.611 -5.006 -0.363 3.384 0.690 -0.932 28.617 13 EE_G5C6:G5C6_FF E 5 ? F 6 ? E 6 ? F 5 ? 1 E G 8 1_555 F C 3 1_555 E C 9 1_555 F G 2 1_555 0.145 -1.691 3.221 2.903 6.225 33.574 -3.794 0.183 2.873 10.639 -4.962 34.250 14 EE_G8C9:G2C3_FF E 8 ? F 3 ? E 9 ? F 2 ? 1 E C 9 1_555 F G 2 1_555 E C 10 1_555 F G 1 1_555 0.509 -2.100 3.300 0.807 4.502 30.454 -4.804 -0.807 2.979 8.509 -1.526 30.787 15 EE_C9C10:G1G2_FF E 9 ? F 2 ? E 10 ? F 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3NJ6 _pdbx_initial_refinement_model.details ? #